Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values
KCNAB2	8514	broad.mit.edu	37	1	6145300	6145300	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:6145300A>G	uc009vlv.1	+	7	453	c.318A>G	c.(316-318)AAA>AAG	p.K106K	KCNAB2_uc001alv.1_Silent_p.K106K|KCNAB2_uc001alw.1_Silent_p.K92K|KCNAB2_uc001alx.1_Silent_p.K106K|KCNAB2_uc001aly.1_Silent_p.K139K|KCNAB2_uc009vlw.1_Silent_p.K39K|KCNAB2_uc001alu.2_Silent_p.K106K	NM_003636	NP_003627	Q13303	KCAB2_HUMAN	potassium voltage-gated channel, shaker-related	106						cytoplasm|integral to membrane|juxtaparanode region of axon	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity				0	Ovarian(185;0.0634)	all_cancers(23;5.85e-39)|all_epithelial(116;4.88e-22)|all_lung(118;4.21e-08)|Lung NSC(185;9.77e-07)|all_hematologic(16;2.78e-06)|all_neural(13;3.18e-06)|Acute lymphoblastic leukemia(12;0.000272)|Breast(487;0.000496)|Renal(390;0.0007)|Colorectal(325;0.00106)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0393)|Medulloblastoma(700;0.211)		Epithelial(90;6.9e-37)|GBM - Glioblastoma multiforme(13;8.8e-31)|OV - Ovarian serous cystadenocarcinoma(86;1.45e-19)|Colorectal(212;2.46e-07)|COAD - Colon adenocarcinoma(227;2.07e-05)|Kidney(185;7.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00131)|BRCA - Breast invasive adenocarcinoma(365;0.00133)|STAD - Stomach adenocarcinoma(132;0.00391)|READ - Rectum adenocarcinoma(331;0.0649)		TTAAGAAGAAAGGATGGAGGT	0.557000												
CASZ1	54897	broad.mit.edu	37	1	10713858	10713858	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:10713858A>G	uc001aro.2	-	11	2576	c.2256T>C	c.(2254-2256)GCT>GCC	p.A752A	CASZ1_uc001arp.1_Silent_p.A752A|CASZ1_uc009vmx.2_Silent_p.A776A	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	752					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		CAGTGGCGGCAGCCAGGGACG	0.667000												
MTOR	2475	broad.mit.edu	37	1	11298633	11298633	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:11298633A>C	uc001asd.2	-	12	1949	c.1828T>G	c.(1828-1830)TTC>GTC	p.F610V		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	610					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						CTGTTCAGGAAATGATCCGCA	0.542000												
MTOR	2475	broad.mit.edu	37	1	11303171	11303171	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:11303171T>G	uc001asd.2	-	9	1533	c.1412A>C	c.(1411-1413)AAG>ACG	p.K471T		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	471					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						AGGTGCTTACTTATGGGCGAA	0.512000												
MAD2L2	10459	broad.mit.edu	37	1	11736991	11736991	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:11736991T>C	uc001asp.2	-	5	434	c.246A>G	c.(244-246)AAA>AAG	p.K82K	MAD2L2_uc009vnc.2_Silent_p.K82K|MAD2L2_uc001asq.3_Silent_p.K82K	NM_006341	NP_006332	Q9UI95	MD2L2_HUMAN	MAD2 homolog	82	Mediates interaction with REV1 and REV3L and homodimerization.|HORMA.				cell division|DNA damage response, signal transduction resulting in transcription|double-strand break repair|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of mitotic anaphase-promoting complex activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription, DNA-dependent|regulation of cell growth|transcription, DNA-dependent	cytoplasm|nucleoplasm|spindle|zeta DNA polymerase complex	JUN kinase binding				0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.04e-06)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|Kidney(185;0.000733)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCACCACCACTTTCTCCACAT	0.582000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage				
VPS13D	55187	broad.mit.edu	37	1	12313878	12313878	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:12313878T>G	uc001atv.2	+	7	805	c.664T>G	c.(664-666)TTA>GTA	p.L222V	VPS13D_uc001atw.2_Missense_Mutation_p.L222V	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	222					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TCAGATGGAGTTACAGGTACG	0.488000												
NBPF1	55672	broad.mit.edu	37	1	16918430	16918430	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:16918430T>C	uc009vos.1	-	7	975	c.87A>G	c.(85-87)GCA>GCG	p.A29A	NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	29						cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GTTTGTTCTCTGCCAGCTGGG	0.478000												
PADI4	23569	broad.mit.edu	37	1	17666206	17666206	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:17666206A>G	uc001baj.2	+	6	578	c.550A>G	c.(550-552)ACC>GCC	p.T184A	PADI4_uc009vpc.2_Missense_Mutation_p.T184A	NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	184					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	GTCGCTGATGACCCTGAGCAC	0.577000												
LIN28A	79727	broad.mit.edu	37	1	26752823	26752823	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:26752823C>T	uc001bmj.2	+	4	618	c.504C>T	c.(502-504)AGC>AGT	p.S168S	LIN28A_uc001bmi.1_RNA	NM_024674	NP_078950	Q9H9Z2	LN28A_HUMAN	lin-28 homolog	168	CCHC-type 2.				miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing|stem cell maintenance	cytoplasmic mRNA processing body|nucleolus|stress granule	DNA binding|zinc ion binding			central_nervous_system(1)	1						AGAGCATCAGCCATATGGTAG	0.532000												
ARID1A	8289	broad.mit.edu	37	1	27105610	27105610	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:27105610C>T	uc001bmv.1	+	20	5594	c.5221C>T	c.(5221-5223)CAG>TAG	p.Q1741*	ARID1A_uc001bmu.1_Nonsense_Mutation_p.Q1524*|ARID1A_uc001bmx.1_Nonsense_Mutation_p.Q587*|ARID1A_uc009vsm.1_Nonsense_Mutation_p.Q69*|ARID1A_uc009vsn.1_5'UTR	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1741					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		TGACCCAGGACAGAGAACGCT	0.493000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC							
FGR	2268	broad.mit.edu	37	1	27949577	27949577	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:27949577T>A	uc001boj.2	-	2	451	c.305A>T	c.(304-306)GAG>GTG	p.E102V	FGR_uc001bok.2_Missense_Mutation_p.E102V|FGR_uc001bol.2_Missense_Mutation_p.E102V|FGR_uc001bom.2_Missense_Mutation_p.E102V	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	102	SH3.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GTGGAACTTCTCGCCCTTGGT	0.408000												
ZSCAN20	7579	broad.mit.edu	37	1	33956645	33956645	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:33956645A>C	uc001bxj.3	+	6	954	c.787A>C	c.(787-789)AGT>CGT	p.S263R	ZSCAN20_uc001bxk.2_Missense_Mutation_p.S209R|ZSCAN20_uc009vui.2_Missense_Mutation_p.S263R	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	263					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				TTCAAAACCAAGTAATACCTC	0.423000												
ZMYM6	9204	broad.mit.edu	37	1	35453121	35453121	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:35453121A>C	uc001byh.2	-	16	3790	c.3562T>G	c.(3562-3564)TTT>GTT	p.F1188V	uc001byd.3_5'Flank|uc001bye.2_5'Flank|ZMYM6_uc001byf.1_Intron|ZMYM6_uc010oht.1_Missense_Mutation_p.F1091V	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	1188					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				AGGTGCTCAAAAATAATCCTT	0.299000												
ZMYM4	9202	broad.mit.edu	37	1	35847321	35847321	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:35847321A>G	uc001byt.2	+	9	1611	c.1531A>G	c.(1531-1533)AAG>GAG	p.K511E	ZMYM4_uc009vuu.2_Missense_Mutation_p.K479E|ZMYM4_uc001byu.2_Missense_Mutation_p.K187E|ZMYM4_uc009vuv.2_Missense_Mutation_p.K250E	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	511	MYM-type 4.				multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ACAGTCTAAGAAGTTTTGTAG	0.418000												
TEKT2	27285	broad.mit.edu	37	1	36552352	36552352	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:36552352A>C	uc001bzr.2	+	5	663	c.536A>C	c.(535-537)AAA>ACA	p.K179T	TEKT2_uc001bzs.2_Missense_Mutation_p.K85T|ADPRHL2_uc001bzt.2_5'Flank|ADPRHL2_uc001bzu.2_5'Flank	NM_014466	NP_055281	Q9UIF3	TEKT2_HUMAN	tektin 2	179					cell projection organization|microtubule cytoskeleton organization	actin cytoskeleton|cilium axoneme|flagellar axoneme|focal adhesion|microtubule|nucleolus					0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CATCGGGGCAAAATGGAGACA	0.567000												
GRIK3	2899	broad.mit.edu	37	1	37337949	37337949	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:37337949A>G	uc001caz.2	-	4	707	c.572T>C	c.(571-573)CTC>CCC	p.L191P	GRIK3_uc001cba.1_Missense_Mutation_p.L191P	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	191	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GGCCATGATGAGCTCCTGCAG	0.572000												
INPP5B	3633	broad.mit.edu	37	1	38328033	38328033	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:38328033T>G	uc001ccg.1	-	24	2790	c.2696A>C	c.(2695-2697)AAG>ACG	p.K899T	INPP5B_uc009vvk.1_3'UTR|MTF1_uc001cce.1_5'Flank|MTF1_uc009vvj.1_5'Flank|INPP5B_uc001ccf.1_Missense_Mutation_p.K735T	NM_005540	NP_005531	P32019	I5P2_HUMAN	inositol polyphosphate-5-phosphatase, 75kDa	979	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to membrane|microtubule cytoskeleton	GTPase activator activity|inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			urinary_tract(1)	1	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				TTGAGCCTTCTTCTTCTCTGT	0.438000												
PABPC4	8761	broad.mit.edu	37	1	40035289	40035289	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:40035289T>C	uc010oiv.1	-	5	1614	c.716A>G	c.(715-717)GAA>GGA	p.E239G	PABPC4_uc001cdl.2_Missense_Mutation_p.E239G|PABPC4_uc001cdm.2_Missense_Mutation_p.E239G|SNORA55_uc001cdo.1_5'Flank	NM_003819	NP_003810	Q13310	PABP4_HUMAN	poly A binding protein, cytoplasmic 4 isoform 2	239	RRM 3.				blood coagulation|RNA catabolic process|RNA processing|translation	cytoplasm|ribonucleoprotein complex	nucleotide binding|poly(A) RNA binding|poly(U) RNA binding|protein binding				0	Lung NSC(20;1.55e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.89e-18)|Epithelial(16;6.17e-17)|all cancers(16;1.18e-15)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CTCGTGTTTTTCGTAACTCAC	0.438000												
TMCO2	127391	broad.mit.edu	37	1	40717105	40717105	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:40717105T>G	uc001cfe.2	+	2	481	c.388T>G	c.(388-390)TTG>GTG	p.L130V		NM_001008740	NP_001008740	Q7Z6W1	TMCO2_HUMAN	transmembrane and coiled-coil domains 2	130	Potential.					integral to membrane				ovary(1)	1	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			AGAGAAAATTTTGAAAAAACT	0.408000												
ZNF684	127396	broad.mit.edu	37	1	41012365	41012365	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:41012365A>C	uc001cft.1	+	5	621	c.370A>C	c.(370-372)AGT>CGT	p.S124R		NM_152373	NP_689586	Q5T5D7	ZN684_HUMAN	zinc finger protein 684	124					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.42e-18)			TATGAGCACAAGTCTTAATCC	0.303000												
HIVEP3	59269	broad.mit.edu	37	1	42048511	42048511	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:42048511T>G	uc001cgz.3	-	4	3171	c.1958A>C	c.(1957-1959)AAG>ACG	p.K653T	HIVEP3_uc001cha.3_Missense_Mutation_p.K653T|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	653	C2H2-type 3; degenerate.|No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				ATCCCTTTTCTTGTACCGAGC	0.458000												
KIAA0467	23334	broad.mit.edu	37	1	43906924	43906924	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:43906924A>C	uc001cjk.1	+	38	5149	c.4687A>C	c.(4687-4689)ACT>CCT	p.T1563P		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2462						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCCCAAAACAACTGATGACAT	0.577000												
EIF2B3	8891	broad.mit.edu	37	1	45392349	45392349	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:45392349C>T	uc001cmt.1	-	5	644	c.517G>A	c.(517-519)GAA>AAA	p.E173K	EIF2B3_uc001cmu.1_Missense_Mutation_p.E173K|EIF2B3_uc001cmv.1_Missense_Mutation_p.E173K|EIF2B3_uc001cmw.2_Missense_Mutation_p.E173K	NM_020365	NP_065098	Q9NR50	EI2BG_HUMAN	eukaryotic translation initiation factor 2B,	173					negative regulation of translational initiation in response to stress|oligodendrocyte development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	nucleotidyltransferase activity|protein binding|translation initiation factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					AAGTCTGCTTCATTAGCCATG	0.413000												
EIF2B3	8891	broad.mit.edu	37	1	45392393	45392393	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:45392393A>C	uc001cmt.1	-	5	600	c.473T>G	c.(472-474)ATT>AGT	p.I158S	EIF2B3_uc001cmu.1_Missense_Mutation_p.I158S|EIF2B3_uc001cmv.1_Missense_Mutation_p.I158S|EIF2B3_uc001cmw.2_Missense_Mutation_p.I158S	NM_020365	NP_065098	Q9NR50	EI2BG_HUMAN	eukaryotic translation initiation factor 2B,	158					negative regulation of translational initiation in response to stress|oligodendrocyte development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	nucleotidyltransferase activity|protein binding|translation initiation factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GTCCACTCCAATGAAGTCACG	0.443000												
HECTD3	79654	broad.mit.edu	37	1	45470426	45470426	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:45470426T>A	uc009vxk.2	-	16	2086	c.1988A>T	c.(1987-1989)AAG>ATG	p.K663M	HECTD3_uc001cmx.3_Missense_Mutation_p.K12M|HECTD3_uc001cmy.3_Missense_Mutation_p.K273M|HECTD3_uc010olh.1_Missense_Mutation_p.K379M	NM_024602	NP_078878	Q5T447	HECD3_HUMAN	HECT domain containing 3	663	HECT.				proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	ubiquitin-protein ligase activity				0	Acute lymphoblastic leukemia(166;0.155)					CTTCCCAAACTTGAACTCAAA	0.517000												
CYP4Z1	199974	broad.mit.edu	37	1	47534415	47534415	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:47534415A>C	uc001cqu.1	+	2	302	c.299A>C	c.(298-300)AAG>ACG	p.K100T		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	100	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						GACTATGCCAAGATTCTCCTG	0.488000												
DMRTA2	63950	broad.mit.edu	37	1	50884941	50884941	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:50884941T>G	uc010ona.1	-	2	1121	c.1025A>C	c.(1024-1026)GAC>GCC	p.D342A	DMRTA2_uc010onb.1_Missense_Mutation_p.D342A	NM_032110	NP_115486	Q96SC8	DMTA2_HUMAN	DMRT-like family A2	342	Gly-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0						CTGCACCACGTCGCCGCCGCA	0.726000												
ZFYVE9	9372	broad.mit.edu	37	1	52703680	52703680	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:52703680T>C	uc001cto.2	+	4	763	c.591T>C	c.(589-591)TTT>TTC	p.F197F	ZFYVE9_uc001ctn.2_Silent_p.F197F|ZFYVE9_uc001ctp.2_Silent_p.F197F	NM_004799	NP_004790	O95405	ZFYV9_HUMAN	zinc finger, FYVE domain containing 9 isoform 3	197					endocytosis|SMAD protein complex assembly|SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	early endosome membrane	metal ion binding|protein binding|receptor activity|serine-type peptidase activity			ovary(2)|lung(2)|central_nervous_system(2)|skin(2)	8						AATTTAGTTTTAGTATAAATG	0.333000												
SCP2	6342	broad.mit.edu	37	1	53493736	53493736	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:53493736T>C	uc001cur.1	+	13	1452	c.1331T>C	c.(1330-1332)CTT>CCT	p.L444P	SCP2_uc001cus.1_RNA|SCP2_uc010ono.1_Missense_Mutation_p.L363P|SCP2_uc010onp.1_Missense_Mutation_p.L420P|SCP2_uc009vzi.1_Missense_Mutation_p.L400P|SCP2_uc010onq.1_Missense_Mutation_p.L40P|SCP2_uc001cut.1_Missense_Mutation_p.L37P|SCP2_uc001cuu.1_Missense_Mutation_p.L40P	NM_002979	NP_002970	P22307	NLTP_HUMAN	sterol carrier protein 2 isoform 1 proprotein	444	SCP2.				bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|lipid transport	mitochondrion|nucleus|peroxisomal matrix	propanoyl-CoA C-acyltransferase activity|propionyl-CoA C2-trimethyltridecanoyltransferase activity|protein binding|sterol binding			breast(1)	1						GAGAAGAAACTTGAAGAGGTA	0.408000												
C1orf177	163747	broad.mit.edu	37	1	55279516	55279516	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:55279516C>T	uc001cyb.3	+	7	846	c.792C>T	c.(790-792)TTC>TTT	p.F264F	C1orf177_uc001cya.3_Silent_p.F264F	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	264											0						TGATGAATTTCAAGAGCTTTG	0.413000												
PRKAA2	5563	broad.mit.edu	37	1	57173228	57173228	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:57173228A>T	uc001cyk.3	+	9	1572	c.1501A>T	c.(1501-1503)AGT>TGT	p.S501C		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	501					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						ACCAAGATCAAGTTTTGATTC	0.493000												
CYP2J2	1573	broad.mit.edu	37	1	60381714	60381714	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:60381714A>C	uc001czq.2	-	2	274	c.269T>G	c.(268-270)CTT>CGT	p.L90R		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	90					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					GCCAGTAATAAGAACTGCAGA	0.403000												
KANK4	163782	broad.mit.edu	37	1	62733982	62733982	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:62733982T>C	uc001dah.3	-	5	2585	c.2208A>G	c.(2206-2208)GAA>GAG	p.E736E	KANK4_uc001dai.3_Silent_p.E108E|KANK4_uc001dag.3_Silent_p.E92E	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	736										ovary(3)|skin(2)|lung(1)	6						AGTGGGGGACTTCTTCCCCAG	0.567000												
EFCAB7	84455	broad.mit.edu	37	1	64036736	64036736	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:64036736A>C	uc001dbf.2	+	13	2046	c.1752A>C	c.(1750-1752)AAA>AAC	p.K584N		NM_032437	NP_115813	A8K855	EFCB7_HUMAN	EF-hand calcium binding domain 7	584							calcium ion binding				0						AGCTAAGTAAAAACTGCATAA	0.299000												
SGIP1	84251	broad.mit.edu	37	1	67142729	67142729	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:67142729T>G	uc001dcr.2	+	13	906	c.689T>G	c.(688-690)ATT>AGT	p.I230S	SGIP1_uc010opd.1_5'UTR|SGIP1_uc001dcs.2_5'UTR|SGIP1_uc001dct.2_5'UTR|uc010ope.1_5'Flank|SGIP1_uc009wat.2_5'UTR	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	230	Pro-rich.				positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						GGCCAACCAATTAATCCAAGC	0.398000												
DIRAS3	9077	broad.mit.edu	37	1	68512291	68512291	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:68512291T>C	uc001ded.2	-	2	985	c.690A>G	c.(688-690)TGA>TGG	p.*230W	uc001deb.1_Intron|uc001dec.1_Intron	NM_004675	NP_004666	O95661	DIRA3_HUMAN	DIRAS family, GTP-binding RAS-like 3	230					regulation of cyclin-dependent protein kinase activity|regulation of gene expression by genetic imprinting|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			skin(1)	1						GGCCCAGGGCTCACATGATTA	0.483000												
RPE65	6121	broad.mit.edu	37	1	68912456	68912456	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:68912456A>C	uc001dei.1	-	3	236	c.182T>G	c.(181-183)TTT>TGT	p.F61C		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	61					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						TTGCCCATCAAACAGGTGGTA	0.522000												
LRRIQ3	127255	broad.mit.edu	37	1	74621506	74621506	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:74621506A>T	uc001dfy.3	-	4	810	c.618T>A	c.(616-618)ACT>ACA	p.T206T	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	206										ovary(2)	2						TAATTTTTGAAGTAATATGTT	0.244000												
LPHN2	23266	broad.mit.edu	37	1	82445580	82445580	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:82445580T>G	uc001dit.3	+	17	3179	c.2998T>G	c.(2998-3000)TTG>GTG	p.L1000V	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.L1000V|LPHN2_uc001div.2_Missense_Mutation_p.L1000V|LPHN2_uc009wcd.2_Missense_Mutation_p.L1000V|LPHN2_uc001diw.2_Missense_Mutation_p.L584V|LPHN2_uc009wce.1_Missense_Mutation_p.L86V	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1013	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		GGTGATCACATTGTGCAAAAT	0.294000												
TTLL7	79739	broad.mit.edu	37	1	84387044	84387044	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:84387044T>G	uc001djc.2	-	11	1572	c.1176A>C	c.(1174-1176)CAA>CAC	p.Q392H	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	392					cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		CCTCAGCTTTTTGTTTGGCCA	0.428000												
TTLL7	79739	broad.mit.edu	37	1	84412957	84412957	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:84412957T>A	uc001djc.2	-	6	752	c.356A>T	c.(355-357)AAG>ATG	p.K119M	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_Intron|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	119	TTL.				cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		AGGCCGAGACTTGATCATTCT	0.328000												
MCOLN3	55283	broad.mit.edu	37	1	85486830	85486830	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:85486830A>C	uc001dkp.2	-	12	1543	c.1450T>G	c.(1450-1452)TCA>GCA	p.S484A	MCOLN3_uc001dko.2_Missense_Mutation_p.S103A|MCOLN3_uc001dkq.2_Missense_Mutation_p.S428A	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	484	Helical; (Potential).					integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		CTGATGAATGAGTAGAGGTAA	0.338000												
SYDE2	84144	broad.mit.edu	37	1	85648753	85648753	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:85648753T>C	uc009wcm.2	-	3	1621	c.1572A>G	c.(1570-1572)CGA>CGG	p.R524R	SYDE2_uc001dku.3_Silent_p.R524R	NM_032184	NP_115560	Q5VT97	SYDE2_HUMAN	synapse defective 1, Rho GTPase, homolog 2	524					activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|central_nervous_system(1)	2				all cancers(265;0.0126)|Epithelial(280;0.0336)		TCCTCACAGTTCGTGGAGATT	0.358000												
BARHL2	343472	broad.mit.edu	37	1	91178170	91178170	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:91178170T>C	uc001dns.2	-	3	905	c.863A>G	c.(862-864)AAG>AGG	p.K288R		NM_020063	NP_064447	Q9NY43	BARH2_HUMAN	BarH-like homeobox 2	288	Homeobox.					nucleus	sequence-specific DNA binding			ovary(1)	1		all_lung(203;0.0263)|Lung SC(238;0.128)		all cancers(265;0.000897)|Epithelial(280;0.00516)|OV - Ovarian serous cystadenocarcinoma(397;0.211)		TGTCTGCCGCTTCCACTTGGT	0.622000												
CCDC18	343099	broad.mit.edu	37	1	93667544	93667544	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:93667544A>C	uc001dpq.2	+	7	1316	c.1148A>C	c.(1147-1149)AAG>ACG	p.K383T		NM_206886	NP_996769	Q5T9S5	CCD18_HUMAN	sarcoma antigen NY-SAR-41	265	Potential.									ovary(2)|breast(2)|pancreas(1)	5		all_lung(203;0.00196)|Lung NSC(277;0.00903)|Melanoma(281;0.099)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00166)|GBM - Glioblastoma multiforme(16;0.00551)|Epithelial(280;0.0967)		AAACTGGAAAAGGTAAAAGGC	0.333000												
F3	2152	broad.mit.edu	37	1	94998735	94998735	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:94998735T>G	uc001dqr.2	-	4	681	c.502A>C	c.(502-504)AGG>CGG	p.R168R	F3_uc001dqp.2_RNA|F3_uc001dqq.2_RNA|F3_uc001dqs.2_Silent_p.R168R	NM_001993	NP_001984	P13726	TF_HUMAN	coagulation factor III precursor	168	Extracellular (Potential).				activation of caspase activity|activation of plasma proteins involved in acute inflammatory response|anti-apoptosis|blood coagulation, extrinsic pathway|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of protein kinase B signaling cascade	extracellular matrix|extracellular space|integral to membrane	cell surface binding|phospholipid binding|protease binding			central_nervous_system(1)	1		all_lung(203;0.00106)|Lung NSC(277;0.00475)		all cancers(265;0.0232)|Epithelial(280;0.121)	Coagulation factor VIIa(DB00036)	GTGTTGTTCCTTCTGACTAAA	0.398000												
LPPR4	9890	broad.mit.edu	37	1	99771358	99771358	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:99771358A>G	uc001dse.2	+	7	1190	c.1084A>G	c.(1084-1086)AAT>GAT	p.N362D	LPPR4_uc010oue.1_Missense_Mutation_p.N304D	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	362							phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		ATCTGCTAAAAATGGTAGCAG	0.458000												
GPSM2	29899	broad.mit.edu	37	1	109444457	109444457	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:109444457A>C	uc010ovc.1	+	8	1339	c.843A>C	c.(841-843)GAA>GAC	p.E281D	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Missense_Mutation_p.E281D|GPSM2_uc010ove.1_Missense_Mutation_p.E281D	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	281					G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		GAGCTGTAGAAGCACAGTCTT	0.373000												
KCNA10	3744	broad.mit.edu	37	1	111060063	111060063	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:111060063A>G	uc001dzt.1	-	1	1735	c.1347T>C	c.(1345-1347)ATT>ATC	p.I449I		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	449	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		CAGGGAGGGCAATGGTGAGGA	0.522000												
ST7L	54879	broad.mit.edu	37	1	113120988	113120988	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:113120988T>G	uc001ecd.2	-	10	1426	c.1121A>C	c.(1120-1122)AAG>ACG	p.K374T	ST7L_uc009wgh.2_RNA|ST7L_uc001ecc.2_Missense_Mutation_p.K191T|ST7L_uc010owg.1_Missense_Mutation_p.K309T|ST7L_uc010owh.1_Missense_Mutation_p.K168T|ST7L_uc001ece.2_Missense_Mutation_p.K374T|ST7L_uc001ecf.2_Missense_Mutation_p.K357T|ST7L_uc001ecg.2_RNA|ST7L_uc010owi.1_Missense_Mutation_p.K309T|ST7L_uc001ech.2_Missense_Mutation_p.K357T|ST7L_uc001eci.2_Missense_Mutation_p.K374T|ST7L_uc009wgi.1_RNA|ST7L_uc010owj.1_Missense_Mutation_p.K357T	NM_017744	NP_060214	Q8TDW4	ST7L_HUMAN	suppression of tumorigenicity 7-like isoform 1	374					negative regulation of cell growth	integral to membrane	binding				0	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGTCCTTGTCTTCAACAGTGC	0.343000												
SYCP1	6847	broad.mit.edu	37	1	115418757	115418757	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:115418757A>C	uc001efr.2	+	10	934	c.725A>C	c.(724-726)AAG>ACG	p.K242T	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.K242T|SYCP1_uc009wgw.2_Missense_Mutation_p.K242T	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	242	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ATGCATTTTAAGTGTAGGTAT	0.274000												
PTGFRN	5738	broad.mit.edu	37	1	117509665	117509665	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:117509665A>G	uc001egv.1	+	6	1909	c.1772A>G	c.(1771-1773)AAG>AGG	p.K591R		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	591	Ig-like C2-type 5.|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		ATGGCTGAGAAGCCTGTCGGC	0.473000												
SPAG17	200162	broad.mit.edu	37	1	118571009	118571009	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:118571009T>G	uc001ehk.2	-	26	3686	c.3618A>C	c.(3616-3618)GAA>GAC	p.E1206D		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1206						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CTGGTTCTACTTCTTCTTCCT	0.413000												
SPAG17	200162	broad.mit.edu	37	1	118629317	118629317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:118629317C>T	uc001ehk.2	-	12	1656	c.1588G>A	c.(1588-1590)GCC>ACC	p.A530T		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	530						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TTCTTGTGGGCGTGTGCATCA	0.393000												
PDE4DIP	9659	broad.mit.edu	37	1	144922549	144922549	+	Silent	SNP	G	G	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:144922549G>C	uc001elw.3	-	7	1149	c.858C>G	c.(856-858)CTC>CTG	p.L286L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.L352L|PDE4DIP_uc001emc.1_Silent_p.L286L|PDE4DIP_uc001emd.1_Silent_p.L286L|PDE4DIP_uc001emb.1_Silent_p.L449L|PDE4DIP_uc001eme.1_5'Flank|PDE4DIP_uc001emf.1_Silent_p.L73L	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	286	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GAGTTTCCTTGAGGTTCTGAA	0.383000			T	PDGFRB	MPD							
PDE4DIP	9659	broad.mit.edu	37	1	144952201	144952201	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:144952201T>G	uc001elw.3	-	4	809	c.518A>C	c.(517-519)AAG>ACG	p.K173T	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.K239T|PDE4DIP_uc001emc.1_Missense_Mutation_p.K173T|PDE4DIP_uc001emd.1_Missense_Mutation_p.K173T|PDE4DIP_uc001emg.1_Missense_Mutation_p.K173T|PDE4DIP_uc001emh.2_Missense_Mutation_p.K310T	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	173	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		AGGCACCTACTTGTCCCTCTG	0.522000			T	PDGFRB	MPD							
TXNIP	10628	broad.mit.edu	37	1	145441019	145441019	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:145441019A>T	uc001enn.3	+	7	1447	c.1106A>T	c.(1105-1107)GAG>GTG	p.E369V	NBPF10_uc001emp.3_Intron|TXNIP_uc001enm.1_Intron|TXNIP_uc010oys.1_Missense_Mutation_p.E314V	NM_006472	NP_006463	Q9H3M7	TXNIP_HUMAN	thioredoxin interacting protein	369					cell cycle|keratinocyte differentiation|transcription, DNA-dependent		ubiquitin protein ligase binding			ovary(2)	2	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TATGCCCCTGAGTTCAAGTTC	0.443000												
NBPF15	284565	broad.mit.edu	37	1	148594490	148594490	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:148594490A>C	uc001esc.2	+	19	2352	c.1863A>C	c.(1861-1863)CAA>CAC	p.Q621H		NM_173638	NP_775909	Q8N660	NBPFF_HUMAN	hypothetical protein LOC284565	621	NBPF 6.					cytoplasm					0	all_hematologic(923;0.032)					ACTTTGAACAACCTGACTCAT	0.448000												
PLEKHO1	51177	broad.mit.edu	37	1	150128276	150128276	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:150128276A>C	uc001ett.2	+	3	472	c.194A>C	c.(193-195)AAT>ACT	p.N65T	PLEKHO1_uc001etr.2_5'UTR|PLEKHO1_uc001ets.2_5'UTR|PLEKHO1_uc001etu.2_5'UTR	NM_016274	NP_057358	Q53GL0	PKHO1_HUMAN	pleckstrin homology domain containing, family O	65	PH.					cytoplasm|nucleus|plasma membrane				lung(1)	1	Lung NSC(24;7.78e-28)|Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			GATGAGAAAAATATTCAAGAG	0.433000												
RPRD2	23248	broad.mit.edu	37	1	150443335	150443335	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:150443335T>C	uc009wlr.2	+	11	2112	c.1911T>C	c.(1909-1911)ACT>ACC	p.T637T	RPRD2_uc010pcc.1_Silent_p.T611T|RPRD2_uc001eup.3_Silent_p.T611T	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	637	Ser-rich.						protein binding			ovary(1)	1						CCCACAATACTAGCCCTGCTG	0.522000												
POGZ	23126	broad.mit.edu	37	1	151384138	151384138	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:151384138T>G	uc001eyd.1	-	12	2195	c.1889A>C	c.(1888-1890)AAT>ACT	p.N630T	POGZ_uc001eye.1_Missense_Mutation_p.N577T|POGZ_uc010pdb.1_Missense_Mutation_p.N621T|POGZ_uc001eyf.1_Missense_Mutation_p.N586T|POGZ_uc010pdc.1_Missense_Mutation_p.N568T|POGZ_uc009wmv.1_Missense_Mutation_p.N535T|POGZ_uc010pdd.1_Missense_Mutation_p.N121T	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	630	C2H2-type 6.				cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TGCATTGCCATTTTTGAAGAC	0.438000												
TCHHL1	126637	broad.mit.edu	37	1	152059288	152059288	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:152059288T>G	uc001ezo.1	-	3	935	c.870A>C	c.(868-870)GAA>GAC	p.E290D		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	290							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			GTAGGGGTGGTTCTTGTATAT	0.443000												
FLG	2312	broad.mit.edu	37	1	152278844	152278844	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:152278844T>A	uc001ezu.1	-	3	8554	c.8518A>T	c.(8518-8520)ACA>TCA	p.T2840S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2840	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTACGTGTTGTTCTGCTTGCA	0.562000									Ichthyosis			
FLG	2312	broad.mit.edu	37	1	152281847	152281847	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:152281847A>G	uc001ezu.1	-	3	5551	c.5515T>C	c.(5515-5517)TCA>CCA	p.S1839P		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1839	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGAGACCCTGAGTGTCCAGAA	0.547000									Ichthyosis			
FLG	2312	broad.mit.edu	37	1	152283117	152283117	+	Silent	SNP	T	T	C	rs150981235		TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:152283117T>C	uc001ezu.1	-	3	4281	c.4245A>G	c.(4243-4245)CAA>CAG	p.Q1415Q	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1415	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGGGCCCAGCTTGTCCGTGGG	0.562000									Ichthyosis			
SPRR2D	6703	broad.mit.edu	37	1	153012624	153012624	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:153012624A>C	uc001fbb.2	-	2	259	c.199T>G	c.(199-201)TGT>GGT	p.C67G	SPRR2D_uc009wnz.2_RNA	NM_006945	NP_008876	P22532	SPR2D_HUMAN	small proline-rich protein 2D	67					keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TTGGGTGGACACTTTGGCTGG	0.542000												
ADAR	103	broad.mit.edu	37	1	154561054	154561054	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:154561054T>C	uc001ffh.2	-	10	3058	c.2858A>G	c.(2857-2859)AAG>AGG	p.K953R	ADAR_uc001ffj.2_Missense_Mutation_p.K908R|ADAR_uc001ffi.2_Missense_Mutation_p.K927R|ADAR_uc001ffk.2_Missense_Mutation_p.K658R	NM_001111	NP_001102	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific isoform a	953	A to I editase.				adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		TGACACAGTCTTTTTTATTTG	0.443000												
ASH1L	55870	broad.mit.edu	37	1	155448496	155448496	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:155448496A>C	uc009wqq.2	-	3	4645	c.4165T>G	c.(4165-4167)TCA>GCA	p.S1389A	ASH1L_uc001fkt.2_Missense_Mutation_p.S1389A|ASH1L_uc009wqr.1_Missense_Mutation_p.S1389A	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1389	Pro-rich.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			GTAAGGGGTGAAGGAGAGTAA	0.468000												
ASH1L	55870	broad.mit.edu	37	1	155450488	155450488	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:155450488T>C	uc009wqq.2	-	3	2653	c.2173A>G	c.(2173-2175)AGA>GGA	p.R725G	ASH1L_uc001fkt.2_Missense_Mutation_p.R725G|ASH1L_uc009wqr.1_Missense_Mutation_p.R725G	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	725					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			CATGTGCTTCTTGCCACCACT	0.403000												
CCDC19	25790	broad.mit.edu	37	1	159842746	159842746	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:159842746A>G	uc001fui.2	-	11	1583	c.1565T>C	c.(1564-1566)CTT>CCT	p.L522P	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Missense_Mutation_p.L437P|CCDC19_uc001ful.2_Missense_Mutation_p.L437P	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	522	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			CAGCTCTTCAAGCTTTTTCCT	0.567000												
CASQ1	844	broad.mit.edu	37	1	160168757	160168757	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:160168757T>G	uc010pja.1	+	9	1155	c.898T>G	c.(898-900)TTA>GTA	p.L300V		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	300						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TTTCGAGTTCTTAGAGACTCT	0.507000												
OLFML2B	25903	broad.mit.edu	37	1	161969998	161969998	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:161969998A>C	uc001gbu.2	-	5	1278	c.854T>G	c.(853-855)CTG>CGG	p.L285R	OLFML2B_uc010pkq.1_Missense_Mutation_p.L286R	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	285										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			CCGGCCTCTCAGGTGGACCTG	0.597000												
LRRC52	440699	broad.mit.edu	37	1	165532984	165532984	+	Missense_Mutation	SNP	G	G	A	rs150359687	byFrequency	TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:165532984G>A	uc001gde.2	+	2	921	c.865G>A	c.(865-867)GGG>AGG	p.G289R	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	289	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					GGACGAGGCCGGGACTAGGGT	0.567000												
ADCY10	55811	broad.mit.edu	37	1	167823637	167823637	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:167823637T>C	uc001ger.2	-	18	2560	c.2262A>G	c.(2260-2262)CAA>CAG	p.Q754Q	ADCY10_uc009wvk.2_Silent_p.Q662Q|ADCY10_uc010plj.1_Silent_p.Q601Q|ADCY10_uc009wvl.2_Silent_p.Q753Q	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	754					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						CAGACTCCGTTTGTTGGAAAA	0.433000												
XCL1	6375	broad.mit.edu	37	1	168550314	168550314	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:168550314A>G	uc001gfo.1	+	3	221	c.201A>G	c.(199-201)AAA>AAG	p.K67K		NM_002995	NP_002986	P47992	XCL1_HUMAN	chemokine (C motif) ligand 1	67					CD4-positive, alpha-beta T cell proliferation|CD8-positive, alpha-beta T cell proliferation|cell-cell signaling|cellular response to interleukin-4|cellular response to transforming growth factor beta stimulus|immunoglobulin production in mucosal tissue|lymphocyte chemotaxis|negative regulation of interferon-gamma production|negative regulation of interleukin-2 production|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of T cell cytokine production|negative regulation of T-helper 1 cell activation|negative regulation of transcription, DNA-dependent|neutrophil chemotaxis|positive regulation of activated T cell proliferation|positive regulation of B cell chemotaxis|positive regulation of granzyme A production|positive regulation of granzyme B production|positive regulation of interleukin-10 production|positive regulation of natural killer cell chemotaxis|positive regulation of neutrophil chemotaxis|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of T cell chemotaxis|positive regulation of T cell cytokine production|positive regulation of T cell mediated cytotoxicity|positive regulation of thymocyte migration|positive regulation of transforming growth factor-beta production|regulation of inflammatory response|release of sequestered calcium ion into cytosol|response to virus|T-helper 1 cell cytokine production|T-helper 2 cell cytokine production	extracellular space	chemokine activity|protein homodimerization activity				0	all_hematologic(923;0.208)					GTGGCCTAAAAGTCTGTGCTG	0.478000												
F5	2153	broad.mit.edu	37	1	169510764	169510764	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:169510764T>C	uc001ggg.1	-	13	3709	c.3564A>G	c.(3562-3564)CCA>CCG	p.P1188P		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1188	2-1.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GGCTGAGGTCTGGAGAGATGA	0.502000												
F5	2153	broad.mit.edu	37	1	169511737	169511737	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:169511737T>G	uc001ggg.1	-	13	2736	c.2591A>C	c.(2590-2592)AAG>ACG	p.K864T		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	864	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCCCTTATGCTTAGCATGTTC	0.443000												
FMO3	2328	broad.mit.edu	37	1	171086467	171086467	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:171086467A>C	uc001ghi.2	+	9	1595	c.1484A>C	c.(1483-1485)AAA>ACA	p.K495T	FMO3_uc001ghh.2_Missense_Mutation_p.K495T|FMO3_uc010pmb.1_Missense_Mutation_p.K475T|FMO3_uc010pmc.1_Missense_Mutation_p.K432T	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	495					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CGGTCGTTGAAACCCATGCAG	0.517000												
SLC9A11	284525	broad.mit.edu	37	1	173503803	173503803	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:173503803A>G	uc001giz.2	-	16	2217	c.1794T>C	c.(1792-1794)ACT>ACC	p.T598T	SLC9A11_uc009wwe.2_Silent_p.T156T|SLC9A11_uc010pmq.1_Intron	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	598					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						GAAATATAAAAGTCAGAAATG	0.254000												
ANGPTL1	9068	broad.mit.edu	37	1	178834562	178834562	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:178834562T>G	uc001gma.2	-	3	826	c.350A>C	c.(349-351)AAG>ACG	p.K117T	RALGPS2_uc001gly.1_Intron|RALGPS2_uc001glz.2_Intron|RALGPS2_uc010pnb.1_Intron|ANGPTL1_uc001gmb.2_Missense_Mutation_p.K117T|ANGPTL1_uc010pnc.1_Missense_Mutation_p.K39T	NM_004673	NP_004664	O95841	ANGL1_HUMAN	angiopoietin-like 1 precursor	117	Potential.					extracellular space	receptor binding				0						TCTCAGCAGCTTTACCTCATT	0.423000												
ABL2	27	broad.mit.edu	37	1	179089374	179089374	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:179089374T>G	uc001gmj.3	-	6	1283	c.996A>C	c.(994-996)GAA>GAC	p.E332D	ABL2_uc010pnf.1_Missense_Mutation_p.E332D|ABL2_uc010png.1_Missense_Mutation_p.E311D|ABL2_uc010pnh.1_Missense_Mutation_p.E311D|ABL2_uc009wxe.2_Missense_Mutation_p.E311D|ABL2_uc001gmg.3_Missense_Mutation_p.E317D|ABL2_uc001gmi.3_Missense_Mutation_p.E317D|ABL2_uc001gmh.3_Missense_Mutation_p.E296D|ABL2_uc010pne.1_Missense_Mutation_p.E296D|ABL2_uc009wxf.1_Missense_Mutation_p.E317D|ABL2_uc001gmk.2_Missense_Mutation_p.E296D	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	332	Protein kinase.				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	TTACTGCAGCTTCTTTCAGGA	0.393000			T	ETV6	AML							
ABL2	27	broad.mit.edu	37	1	179095648	179095648	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:179095648T>C	uc001gmj.3	-	4	838	c.551A>G	c.(550-552)GAG>GGG	p.E184G	ABL2_uc010pnf.1_Missense_Mutation_p.E184G|ABL2_uc010png.1_Missense_Mutation_p.E163G|ABL2_uc010pnh.1_Missense_Mutation_p.E163G|ABL2_uc009wxe.2_Missense_Mutation_p.E163G|ABL2_uc001gmg.3_Missense_Mutation_p.E169G|ABL2_uc001gmi.3_Missense_Mutation_p.E169G|ABL2_uc001gmh.3_Missense_Mutation_p.E148G|ABL2_uc010pne.1_Missense_Mutation_p.E148G|ABL2_uc009wxf.1_Missense_Mutation_p.E169G|ABL2_uc001gmk.2_Missense_Mutation_p.E148G	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	184	SH2.				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	GAGCAGATACTCAGCTGCACT	0.557000			T	ETV6	AML							
SOAT1	6646	broad.mit.edu	37	1	179304702	179304702	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:179304702T>C	uc001gml.2	+	4	302	c.239T>C	c.(238-240)CTC>CCC	p.L80P	SOAT1_uc010pni.1_Missense_Mutation_p.L15P|SOAT1_uc001gmm.2_Missense_Mutation_p.L22P|SOAT1_uc010pnj.1_5'UTR|SOAT1_uc010pnk.1_Missense_Mutation_p.L15P	NM_003101	NP_003092	P35610	SOAT1_HUMAN	sterol O-acyltransferase 1	80					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|cholesterol storage|macrophage derived foam cell differentiation|positive regulation of amyloid precursor protein biosynthetic process|very-low-density lipoprotein particle assembly	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			central_nervous_system(1)|skin(1)	2					Ezetimibe(DB00973)|Hesperetin(DB01094)	GTGACCAATCTCATTGAAAAG	0.358000												
GLUL	2752	broad.mit.edu	37	1	182355421	182355421	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:182355421A>G	uc001gpa.1	-	4	657	c.445T>C	c.(445-447)TGG>CGG	p.W149R	GLUL_uc010pnt.1_5'Flank|GLUL_uc001gpb.1_Missense_Mutation_p.W149R|GLUL_uc001gpc.1_Missense_Mutation_p.W149R|GLUL_uc001gpd.1_Missense_Mutation_p.W149R	NM_001033056	NP_001028228	P15104	GLNA_HUMAN	glutamine synthetase	149					cell proliferation|glutamine biosynthetic process|neurotransmitter uptake	cytosol|Golgi apparatus|mitochondrion	ATP binding|glutamate decarboxylase activity|glutamate-ammonia ligase activity|identical protein binding				0					Asparaginase(DB00023)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)|L-Methionine(DB00134)	TTGGAAGGCCAACCAAAGGGG	0.562000												
RGS16	6004	broad.mit.edu	37	1	182572397	182572397	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:182572397T>C	uc001gpl.3	-	2	276	c.122A>G	c.(121-123)AAG>AGG	p.K41R	RGS16_uc010pnv.1_Missense_Mutation_p.K41R	NM_002928	NP_002919	O15492	RGS16_HUMAN	regulator of G-protein signalling 16	41					negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity			ovary(1)	1						CCACTCGAACTTGCCAGTACT	0.512000												
DHX9	1660	broad.mit.edu	37	1	182829162	182829162	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:182829162A>C	uc001gpr.2	+	12	1338	c.1175A>C	c.(1174-1176)AAA>ACA	p.K392T	DHX9_uc001gps.2_Missense_Mutation_p.K178T	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	392					CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						CCTGTGAAGAAATTTGAAAGT	0.418000												
PTGS2	5743	broad.mit.edu	37	1	186643498	186643498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:186643498G>A	uc001gsb.2	-	10	1939	c.1802C>T	c.(1801-1803)TCG>TTG	p.S601L	PTGS2_uc009wyo.2_Missense_Mutation_p.S448L	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	601					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	CAGTTCAGTCGAACGTTCTTT	0.313000												
LHX9	56956	broad.mit.edu	37	1	197890706	197890706	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:197890706A>C	uc001guk.1	+	3	1087	c.650A>C	c.(649-651)AAC>ACC	p.N217T	LHX9_uc001gui.1_Missense_Mutation_p.N208T|LHX9_uc001guj.1_Missense_Mutation_p.N223T	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	217					motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						CCTTACTTCAACGGTACGGGC	0.637000												
CAMSAP1L1	23271	broad.mit.edu	37	1	200822487	200822487	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:200822487A>C	uc001gvl.2	+	14	3990	c.3720A>C	c.(3718-3720)AAA>AAC	p.K1240N	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.K1229N|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.K1213N	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	1240						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TGAGGCGGAAACAACTGAAAC	0.368000												
LAD1	3898	broad.mit.edu	37	1	201355652	201355652	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:201355652C>T	uc001gwm.2	-	3	1072	c.837G>A	c.(835-837)CCG>CCA	p.P279P	LAD1_uc009wzu.1_Silent_p.P301P	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	279						basement membrane	structural molecule activity				0						TCTTTGGGGCCGGCTTAGCAT	0.637000												
NAV1	89796	broad.mit.edu	37	1	201751840	201751840	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:201751840A>T	uc001gwu.2	+	6	2547	c.2200A>T	c.(2200-2202)ACA>TCA	p.T734S	NAV1_uc001gwv.1_Missense_Mutation_p.T242S|NAV1_uc001gww.1_Missense_Mutation_p.T343S|NAV1_uc001gwx.2_Missense_Mutation_p.T343S|NAV1_uc001gwy.1_Missense_Mutation_p.T115S	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	734	Potential.				cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						TGTCAATCAGACAGATCGGGA	0.557000												
LGR6	59352	broad.mit.edu	37	1	202287259	202287259	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:202287259T>A	uc001gxu.2	+	18	1828	c.1828T>A	c.(1828-1830)TTG>ATG	p.L610M	LGR6_uc001gxv.2_Missense_Mutation_p.L558M|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Missense_Mutation_p.L471M	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	610	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						CGCCAACACCTTGACTGGCAT	0.627000												
PRELP	5549	broad.mit.edu	37	1	203452402	203452402	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:203452402T>C	uc001gzs.2	+	2	290	c.90T>C	c.(88-90)ACT>ACC	p.T30T	PRELP_uc001gzt.2_Silent_p.T30T	NM_002725	NP_002716	P51888	PRELP_HUMAN	proline arginine-rich end leucine-rich repeat	30					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent			ovary(1)|central_nervous_system(1)|pancreas(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.109)			GACCCGGGACTGGGCCCGGGC	0.652000												
LAX1	54900	broad.mit.edu	37	1	203741246	203741246	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:203741246T>A	uc001haa.2	+	4	771	c.361T>A	c.(361-363)TCC>ACC	p.S121T	LAX1_uc010pql.1_Missense_Mutation_p.S105T|LAX1_uc001hab.2_Missense_Mutation_p.S45T	NM_017773	NP_060243	Q8IWV1	LAX1_HUMAN	lymphocyte transmembrane adaptor 1 isoform a	121	Cytoplasmic (Potential).				B cell activation|immune response|inactivation of MAPK activity|intracellular signal transduction|negative regulation of T cell activation	Golgi apparatus|integral to membrane|plasma membrane	protein kinase binding|SH2 domain binding			central_nervous_system(2)	2	all_cancers(21;0.0915)		BRCA - Breast invasive adenocarcinoma(75;0.109)			GAGCCTCCTCTCCAGAAATTC	0.493000												
LRRN2	10446	broad.mit.edu	37	1	204587213	204587213	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:204587213A>G	uc001hbe.1	-	3	2296	c.1908T>C	c.(1906-1908)GCT>GCC	p.A636A	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Silent_p.A636A|LRRN2_uc009xbf.1_Silent_p.A636A|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	636	Helical; (Potential).				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			GGACAGCGAGAGCCAGGATGG	0.647000												
CR1	1378	broad.mit.edu	37	1	207780607	207780607	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:207780607T>G	uc001hfy.2	+	28	4612	c.4472T>G	c.(4471-4473)ATT>AGT	p.I1491S	CR1_uc009xcl.1_Missense_Mutation_p.I1041S|CR1_uc001hfx.2_Missense_Mutation_p.I1941S	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1491	Extracellular (Potential).|Sushi 23.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TTTCGACTCATTGGTTCCCCA	0.338000												
INTS7	25896	broad.mit.edu	37	1	212161319	212161319	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:212161319A>G	uc001hiw.1	-	8	1011	c.906T>C	c.(904-906)ACT>ACC	p.T302T	INTS7_uc009xdb.1_Silent_p.T302T|INTS7_uc001hix.1_Silent_p.T178T|INTS7_uc001hiy.1_Silent_p.T302T|INTS7_uc010pta.1_Silent_p.T253T	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	302					snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		TGTCATAAGGAGTCTGGAGGG	0.393000												
USH2A	7399	broad.mit.edu	37	1	216595645	216595645	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:216595645A>C	uc001hku.1	-	2	421	c.34T>G	c.(34-36)TTC>GTC	p.F12V	USH2A_uc001hkv.2_Missense_Mutation_p.F12V	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	12					maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGAAACAAGAAGCCAGAGCCC	0.423000										HNSCC(13;0.011)		
MOSC1	64757	broad.mit.edu	37	1	220970082	220970082	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:220970082T>G	uc001hms.2	+	3	795	c.547T>G	c.(547-549)TTC>GTC	p.F183V	MOSC1_uc001hmt.2_Missense_Mutation_p.F183V	NM_022746	NP_073583	Q5VT66	MOSC1_HUMAN	MOCO sulphurase C-terminal domain containing 1	183							molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.0358)		CCTGGTGCACTTCGAGCCTCA	0.592000												
MOSC1	64757	broad.mit.edu	37	1	220978447	220978447	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:220978447T>C	uc001hms.2	+	5	1055	c.807T>C	c.(805-807)GCT>GCC	p.A269A	MOSC1_uc001hmt.2_Silent_p.A286A	NM_022746	NP_073583	Q5VT66	MOSC1_HUMAN	MOCO sulphurase C-terminal domain containing 1	269	MOSC.						molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.0358)		GGGTGATGGCTTGTTCCAGGT	0.532000												
MIA3	375056	broad.mit.edu	37	1	222806483	222806483	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:222806483T>C	uc001hnl.2	+	6	3378	c.3369T>C	c.(3367-3369)ATT>ATC	p.I1123I	MIA3_uc009xea.1_Silent_p.I959I	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	1123	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		TGGATGCTATTGATGCAAACA	0.383000												
LIN9	286826	broad.mit.edu	37	1	226455692	226455692	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:226455692A>C	uc001hqa.2	-	8	1140	c.830T>G	c.(829-831)CTT>CGT	p.L277R	LIN9_uc001hqb.2_Missense_Mutation_p.L242R|LIN9_uc001hqc.2_Missense_Mutation_p.L209R|LIN9_uc009xel.1_Missense_Mutation_p.L242R	NM_173083	NP_775106	Q5TKA1	LIN9_HUMAN	lin-9 homolog	261	Sufficient for interaction with RB1.				cell cycle|DNA replication	nucleoplasm					0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.131)		ATGGGTTCCAAGCCCTGTCCT	0.358000												
URB2	9816	broad.mit.edu	37	1	229771360	229771360	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:229771360T>C	uc001hts.1	+	4	1136	c.1000T>C	c.(1000-1002)TGC>CGC	p.C334R	URB2_uc009xfd.1_Missense_Mutation_p.C334R	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	334						nucleolus				central_nervous_system(2)|ovary(1)	3						GTTGTTTGGCTGCTTGAAGAT	0.488000												
URB2	9816	broad.mit.edu	37	1	229773272	229773272	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:229773272T>G	uc001hts.1	+	4	3048	c.2912T>G	c.(2911-2913)TTT>TGT	p.F971C	URB2_uc009xfd.1_Missense_Mutation_p.F971C	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	971						nucleolus				central_nervous_system(2)|ovary(1)	3						AGTGATATTTTTGAGGTTGTA	0.443000												
PGBD5	79605	broad.mit.edu	37	1	230486768	230486768	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:230486768T>C	uc010pwb.1	-	3	623	c.623A>G	c.(622-624)AAG>AGG	p.K208R	PGBD5_uc001htv.2_Missense_Mutation_p.K307R	NM_024554	NP_078830	Q8N414	PGBD5_HUMAN	piggyBac transposable element derived 5	208						integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(184;0.0397)	Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;0.201)		CTTTTTCCTCTTTCGCAGCTC	0.557000												
SIPA1L2	57568	broad.mit.edu	37	1	232581415	232581415	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:232581415A>G	uc001hvg.2	-	9	3371	c.3213T>C	c.(3211-3213)ACT>ACC	p.T1071T	SIPA1L2_uc001hvf.2_Silent_p.T145T	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1071					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GCAGGGCAGGAGTGGGCACCC	0.652000												
PCNXL2	80003	broad.mit.edu	37	1	233136103	233136103	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:233136103T>C	uc001hvl.2	-	30	5511	c.5276A>G	c.(5275-5277)GAG>GGG	p.E1759G	PCNXL2_uc001hvk.1_Missense_Mutation_p.E411G|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1759						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GACCTTGTACTCGTCGGCACC	0.612000												
SLC35F3	148641	broad.mit.edu	37	1	234452387	234452387	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:234452387A>C	uc001hwa.1	+	4	889	c.661A>C	c.(661-663)ATG>CTG	p.M221L	SLC35F3_uc001hvy.1_Missense_Mutation_p.M290L	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	221	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			CATTGTGATGATGACCTACGC	0.592000												
TARBP1	6894	broad.mit.edu	37	1	234541725	234541725	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:234541725T>G	uc001hwd.2	-	24	3913	c.3913A>C	c.(3913-3915)AGT>CGT	p.S1305R		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	1305					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			TCTTCAACACTTAACACTTTA	0.443000												
LYST	1130	broad.mit.edu	37	1	235884124	235884124	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:235884124T>A	uc001hxj.2	-	40	9572	c.9397A>T	c.(9397-9399)AAT>TAT	p.N3133Y	LYST_uc001hxi.2_Missense_Mutation_p.N357Y	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	3133	BEACH.				defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TACCATAAATTTGTCAGAGCG	0.373000									Chediak-Higashi_syndrome			
LYST	1130	broad.mit.edu	37	1	235993568	235993568	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:235993568T>G	uc001hxj.2	-	3	325	c.150A>C	c.(148-150)CGA>CGC	p.R50R	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Silent_p.R50R|LYST_uc001hxm.2_RNA|LYST_uc001hxn.1_Silent_p.R50R	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	50					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			ATAGAAATCCTCGACCATGGA	0.418000									Chediak-Higashi_syndrome			
ACTN2	88	broad.mit.edu	37	1	236906233	236906233	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:236906233A>G	uc001hyf.2	+	11	1349	c.1145A>G	c.(1144-1146)GAG>GGG	p.E382G	ACTN2_uc001hyg.2_Missense_Mutation_p.E174G|ACTN2_uc009xgi.1_Missense_Mutation_p.E382G|ACTN2_uc010pxu.1_Missense_Mutation_p.E71G|ACTN2_uc001hyh.2_Missense_Mutation_p.E70G	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	382	Spectrin 1.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			GAGCAGGCTGAGAAGGGTTAC	0.542000												
ACTN2	88	broad.mit.edu	37	1	236914899	236914899	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:236914899A>T	uc001hyf.2	+	15	1990	c.1786A>T	c.(1786-1788)AGC>TGC	p.S596C	ACTN2_uc001hyg.2_Missense_Mutation_p.S388C|ACTN2_uc009xgi.1_Missense_Mutation_p.S596C|ACTN2_uc010pxu.1_Missense_Mutation_p.S285C|ACTN2_uc001hyh.2_Missense_Mutation_p.S284C	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	596	Spectrin 3.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			AATCAGCTCAAGCAACCCGTA	0.602000												
RYR2	6262	broad.mit.edu	37	1	237754244	237754244	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:237754244A>T	uc001hyl.1	+	31	4232	c.4112A>T	c.(4111-4113)AAC>ATC	p.N1371I		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1371	Cytoplasmic (By similarity).|B30.2/SPRY 3.|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CCAGAGTTTAACAACCACAAA	0.403000												
RYR2	6262	broad.mit.edu	37	1	237777619	237777619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:237777619G>A	uc001hyl.1	+	37	5311	c.5191G>A	c.(5191-5193)GAG>AAG	p.E1731K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1731	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CCCCATGACGGAGGAGACGAA	0.552000												
RYR2	6262	broad.mit.edu	37	1	237806735	237806735	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:237806735A>T	uc001hyl.1	+	48	7450	c.7330A>T	c.(7330-7332)ACA>TCA	p.T2444S		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2444	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCAGATGCCAACAATAGCCAA	0.448000												
CHRM3	1131	broad.mit.edu	37	1	240071166	240071166	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:240071166T>A	uc001hyp.2	+	5	1194	c.415T>A	c.(415-417)TTG>ATG	p.L139M		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	139	Extracellular (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	CTTAGGGAACTTGGCCTGTGA	0.473000												
ADSS	159	broad.mit.edu	37	1	244587330	244587330	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:244587330A>C	uc001iaj.2	-	6	800	c.506T>G	c.(505-507)GTT>GGT	p.V169G	ADSS_uc009xgr.1_RNA	NM_001126	NP_001117	P30520	PURA2_HUMAN	adenylosuccinate synthase	169					AMP biosynthetic process|immune system process|purine base metabolic process	cytosol|plasma membrane	adenylosuccinate synthase activity|GTP binding|magnesium ion binding|phosphate binding			ovary(2)|kidney(1)	3	all_cancers(71;2.17e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)	all_cancers(173;0.0896)|all_epithelial(177;0.172)	all cancers(7;9.71e-08)|GBM - Glioblastoma multiforme(7;1.28e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.0014)		L-Aspartic Acid(DB00128)	GGACGAATAAACTGGGCCAAT	0.423000												
C1orf101	257044	broad.mit.edu	37	1	244724442	244724442	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:244724442T>G	uc001iam.2	+	10	1561	c.1502T>G	c.(1501-1503)TTC>TGC	p.F501C	C1orf101_uc001iak.1_Missense_Mutation_p.F55C|C1orf101_uc001ial.2_Missense_Mutation_p.F501C|C1orf101_uc010pym.1_Missense_Mutation_p.F350C|C1orf101_uc010pyn.1_Missense_Mutation_p.F434C	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	501	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			CATGAAGTTTTCATAGGTAAG	0.338000												
NLRP3	114548	broad.mit.edu	37	1	247588114	247588114	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:247588114A>G	uc001icr.2	+	5	1507	c.1369A>G	c.(1369-1371)AGC>GGC	p.S457G	NLRP3_uc001ics.2_Missense_Mutation_p.S457G|NLRP3_uc001icu.2_Missense_Mutation_p.S457G|NLRP3_uc001icw.2_Missense_Mutation_p.S457G|NLRP3_uc001icv.2_Missense_Mutation_p.S457G|NLRP3_uc010pyw.1_Missense_Mutation_p.S455G|NLRP3_uc001ict.1_Missense_Mutation_p.S455G	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	457	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CCGGGGAGGGAGCCAGGAGCA	0.597000												
OR11L1	391189	broad.mit.edu	37	1	248004777	248004777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:248004777C>T	uc001idn.1	-	1	422	c.422G>A	c.(421-423)TGT>TAT	p.C141Y		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	141	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CAACCTGGCACAGAGCCCACG	0.592000												
OR2M5	127059	broad.mit.edu	37	1	248308778	248308778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:248308778C>T	uc010pze.1	+	1	329	c.329C>T	c.(328-330)TCC>TTC	p.S110F		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			CTGCTTGGCTCCGAATGCTTT	0.443000												
OR2M4	26245	broad.mit.edu	37	1	248402855	248402855	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:248402855T>C	uc010pzh.1	+	1	625	c.625T>C	c.(625-627)TTT>CTT	p.F209L		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AATGCTAATCTTTCCAGTTTC	0.448000												
OR2G6	391211	broad.mit.edu	37	1	248685651	248685651	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:248685651A>G	uc001ien.1	+	1	704	c.704A>G	c.(703-705)CAA>CGA	p.Q235R		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCGGGCCGCCAAAAGGCCTTT	0.463000												
FBXO18	84893	broad.mit.edu	37	10	5957404	5957404	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:5957404A>C	uc001iis.2	+	9	1530	c.1435A>C	c.(1435-1437)AAG>CAG	p.K479Q	FBXO18_uc001iir.2_Missense_Mutation_p.K405Q|FBXO18_uc009xig.2_Missense_Mutation_p.K405Q|FBXO18_uc001iit.2_Missense_Mutation_p.K530Q	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	479					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						GTATGCAGAGAAGTGGTCTCA	0.547000												
PRKCQ	5588	broad.mit.edu	37	10	6540451	6540451	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:6540451T>C	uc001ijj.1	-	5	524	c.449A>G	c.(448-450)AAG>AGG	p.K150R	PRKCQ_uc009xim.1_Missense_Mutation_p.K150R|PRKCQ_uc001iji.1_Missense_Mutation_p.K183R|PRKCQ_uc009xin.1_Missense_Mutation_p.K114R|PRKCQ_uc010qax.1_Missense_Mutation_p.K25R	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	150					axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						CTTTGCCTGCTTGATGGCACC	0.517000												
UPF2	26019	broad.mit.edu	37	10	12046600	12046600	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:12046600A>T	uc001ila.2	-	4	1907	c.1433T>A	c.(1432-1434)GTC>GAC	p.V478D	UPF2_uc001ilb.2_Missense_Mutation_p.V478D|UPF2_uc001ilc.2_Missense_Mutation_p.V478D|UPF2_uc009xiz.1_Missense_Mutation_p.V478D	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	478					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				GATGGCTGGGACAAAAGCCTT	0.348000												
RSU1	6251	broad.mit.edu	37	10	16635430	16635430	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:16635430T>G	uc001iok.2	-	8	1099	c.797A>C	c.(796-798)AAG>ACG	p.K266T	RSU1_uc001iol.2_Missense_Mutation_p.K266T|RSU1_uc001iom.2_Missense_Mutation_p.K213T	NM_152724	NP_689937	Q15404	RSU1_HUMAN	ras suppressor protein 1 isoform 2	266					cell junction assembly|signal transduction	cytosol	protein binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(1;7.54e-08)		CCGGCTGATCTTTTTCGATTT	0.493000												
CUBN	8029	broad.mit.edu	37	10	17113591	17113591	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:17113591T>G	uc001ioo.2	-	19	2511	c.2459A>C	c.(2458-2460)GAA>GCA	p.E820A		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	820	CUB 4.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TCCAGTTAATTCATCCCCGCA	0.413000												
GPR158	57512	broad.mit.edu	37	10	25887698	25887698	+	Missense_Mutation	SNP	C	C	A	rs149957388	byFrequency	TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:25887698C>A	uc001isj.2	+	11	3203	c.3143C>A	c.(3142-3144)TCT>TAT	p.S1048Y	GPR158_uc001isk.2_Missense_Mutation_p.S423Y	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	1048	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						AAGGAGAAATCTCACCACAAG	0.458000												
GAD2	2572	broad.mit.edu	37	10	26559570	26559570	+	Missense_Mutation	SNP	G	G	A	rs2839678		TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:26559570G>A	uc001isp.2	+	10	1480	c.977G>A	c.(976-978)GGG>GAG	p.G326E	GAD2_uc001isq.2_Missense_Mutation_p.G326E	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	326					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	TTCGCACAGGGGTTTGTTCCT	0.463000												
WAC	51322	broad.mit.edu	37	10	28899749	28899749	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:28899749A>C	uc001iuf.2	+	9	1372	c.1287A>C	c.(1285-1287)CAA>CAC	p.Q429H	WAC_uc001iud.2_Missense_Mutation_p.Q384H|WAC_uc001iue.2_Missense_Mutation_p.Q119H|WAC_uc001iug.2_Missense_Mutation_p.Q326H|WAC_uc001iuh.2_Missense_Mutation_p.Q381H	NM_016628	NP_057712	Q9BTA9	WAC_HUMAN	WW domain-containing adapter with a coiled-coil	429					cell cycle checkpoint|histone H2B conserved C-terminal lysine ubiquitination|histone monoubiquitination|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nuclear speck	chromatin binding|RNA polymerase II core binding			large_intestine(1)|ovary(1)	2						TCTCTACACAAGGTATTCTTA	0.338000												
KIF5B	3799	broad.mit.edu	37	10	32317437	32317437	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:32317437T>C	uc001iwe.3	-	15	2114	c.1644A>G	c.(1642-1644)AAA>AAG	p.K548K		NM_004521	NP_004512	P33176	KINH_HUMAN	kinesin family member 5B	548					stress granule disassembly|vesicle transport along microtubule	kinesin complex|microtubule|perinuclear region of cytoplasm|vesicle	ATP binding|microtubule binding|microtubule motor activity		KIF5B/ALK(4)	lung(4)|ovary(1)	5		Prostate(175;0.0137)				CTGCTCGTTTTTTCTGGTGGT	0.353000												
FZD8	8325	broad.mit.edu	37	10	35930201	35930201	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:35930201T>C	uc001iyz.1	-	1	162	c.157A>G	c.(157-159)ATG>GTG	p.M53V		NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor	53	FZ.|Extracellular (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						TGATTGGGCATGTAGGTGTAG	0.627000												
BMS1	9790	broad.mit.edu	37	10	43312891	43312891	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:43312891A>G	uc001jaj.2	+	15	2887	c.2529A>G	c.(2527-2529)GGA>GGG	p.G843G		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	843					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						ATGATGAAGGAGAAAGCACAT	0.393000												
OR13A1	79290	broad.mit.edu	37	10	45799853	45799853	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:45799853C>T	uc001jcc.1	-	4	327	c.18G>A	c.(16-18)GAG>GAA	p.E6E	OR13A1_uc001jcd.1_Silent_p.E2E	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCAGGTGACTCTCCATCCACA	0.522000												
RBP3	5949	broad.mit.edu	37	10	48385883	48385883	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:48385883T>G	uc001jez.2	-	2	3323	c.3209A>C	c.(3208-3210)AAG>ACG	p.K1070T		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	1070	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GTGCATGATCTTCTTCCAGAT	0.567000												
ERCC6	2074	broad.mit.edu	37	10	50678232	50678232	+	Missense_Mutation	SNP	T	T	G	rs35756610	byFrequency	TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:50678232T>G	uc001jhs.3	-	18	3928	c.3774A>C	c.(3772-3774)AAA>AAC	p.K1258N	ERCC6_uc009xod.2_Missense_Mutation_p.K418N|ERCC6_uc010qgr.1_Missense_Mutation_p.K628N|ERCC6_uc001jhr.3_Missense_Mutation_p.K626N	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	1258					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						GATTACCTGATTTTTTGAAAA	0.408000								Direct_reversal_of_damage|NER				
RHOBTB1	9886	broad.mit.edu	37	10	62648482	62648482	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:62648482T>A	uc001jli.2	-	7	1382	c.944A>T	c.(943-945)AAG>ATG	p.K315M	RHOBTB1_uc001jlh.2_Missense_Mutation_p.K315M|RHOBTB1_uc001jlj.2_Missense_Mutation_p.K315M|RHOBTB1_uc001jlk.2_Missense_Mutation_p.K315M|RHOBTB1_uc009xpe.1_Missense_Mutation_p.K253M|RHOBTB1_uc001jll.2_Missense_Mutation_p.K65M	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	315	BTB 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					TCTGCTCTGCTTCTCTTTCTC	0.493000												
LRRTM3	347731	broad.mit.edu	37	10	68687062	68687062	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:68687062A>T	uc001jmz.1	+	2	938	c.388A>T	c.(388-390)AGA>TGA	p.R130*	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Nonsense_Mutation_p.R130*	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	130	LRR 3.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CAATACCTTCAGACCTGTGAC	0.398000												
HERC4	26091	broad.mit.edu	37	10	69748461	69748461	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:69748461A>C	uc001jng.3	-	15	2076	c.1765T>G	c.(1765-1767)TTT>GTT	p.F589V	HERC4_uc009xpq.2_Missense_Mutation_p.F130V|HERC4_uc001jnf.3_RNA|HERC4_uc001jnh.3_Missense_Mutation_p.F589V|HERC4_uc009xpr.2_Missense_Mutation_p.F589V|HERC4_uc001jni.3_Missense_Mutation_p.F333V|HERC4_uc001jnj.2_Missense_Mutation_p.F589V	NM_022079	NP_071362	Q5GLZ8	HERC4_HUMAN	hect domain and RLD 4 isoform a	589					cell differentiation|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|spermatogenesis	cytosol	ubiquitin-protein ligase activity			ovary(1)|breast(1)|skin(1)	3						GTATGAAGAAAACTGTTGAAA	0.333000												
RUFY2	55680	broad.mit.edu	37	10	70139223	70139223	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:70139223T>G	uc001job.2	-	12	1595	c.1268A>C	c.(1267-1269)AAA>ACA	p.K423T	RUFY2_uc001jnz.1_RNA|RUFY2_uc001joa.2_5'Flank|RUFY2_uc001joc.2_Missense_Mutation_p.K354T|RUFY2_uc010qiw.1_Missense_Mutation_p.K330T|RUFY2_uc001jod.1_Missense_Mutation_p.K388T	NM_017987	NP_060457	Q8WXA3	RUFY2_HUMAN	RUN and FYVE domain-containing 2 isoform a	437	Potential.					nucleus	metal ion binding			ovary(1)	1						TTTATTGGTTTTTTCTTCTAG	0.264000												
CDH23	64072	broad.mit.edu	37	10	73548718	73548718	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:73548718T>G	uc001jrx.3	+	43	6219	c.5842T>G	c.(5842-5844)TTC>GTC	p.F1948V		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1948	Cadherin 18.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GCTTCTGATCTTCCTTTCTGA	0.562000												
AP3M1	26985	broad.mit.edu	37	10	75884219	75884219	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:75884219T>G	uc001jwf.2	-	8	1505	c.1075A>C	c.(1075-1077)AAT>CAT	p.N359H	AP3M1_uc001jwg.2_Missense_Mutation_p.N359H|AP3M1_uc001jwh.2_Missense_Mutation_p.N359H|AP3M1_uc010qla.1_Missense_Mutation_p.N305H	NM_207012	NP_996895	Q9Y2T2	AP3M1_HUMAN	adaptor-related protein complex 3, mu 1 subunit	359	MHD.				protein targeting to lysosome|vesicle-mediated transport	clathrin adaptor complex|Golgi apparatus|lysosome	protein binding				0	Prostate(51;0.0112)					GACTGTAAATTTACCAGTCCT	0.388000												
KCNMA1	3778	broad.mit.edu	37	10	78943197	78943197	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:78943197A>C	uc001jxn.2	-	5	967	c.790T>G	c.(790-792)TTA>GTA	p.L264V	KCNMA1_uc001jxj.2_Missense_Mutation_p.L264V|KCNMA1_uc001jxk.1_5'UTR|KCNMA1_uc009xrt.1_Missense_Mutation_p.L84V|KCNMA1_uc001jxo.2_Missense_Mutation_p.L264V|KCNMA1_uc001jxm.2_Missense_Mutation_p.L264V|KCNMA1_uc001jxq.2_Missense_Mutation_p.L264V	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	264	Extracellular (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	CTTCTGTTTAAGTACACAGAC	0.498000												
MINPP1	9562	broad.mit.edu	37	10	89272956	89272956	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:89272956T>A	uc001keu.2	+	3	1361	c.911T>A	c.(910-912)GTT>GAT	p.V304D	MINPP1_uc009xtf.1_Intron|MINPP1_uc001kev.2_Intron	NM_004897	NP_004888	Q9UNW1	MINP1_HUMAN	multiple inositol polyphosphate histidine	304					bone mineralization|polyphosphate metabolic process	endoplasmic reticulum lumen	acid phosphatase activity|bisphosphoglycerate 3-phosphatase activity|multiple inositol-polyphosphate phosphatase activity|phosphohistidine phosphatase activity			urinary_tract(1)	1		Colorectal(252;0.122)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00123)		TGGTGTGATGTTTTTGACATA	0.313000												
LIPJ	142910	broad.mit.edu	37	10	90356123	90356123	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:90356123T>G	uc001kff.2	+	7	840	c.526T>G	c.(526-528)TTA>GTA	p.L176V		NM_001010939	NP_001010939	Q5W064	LIPJ_HUMAN	lipase, family member J	176					lipid catabolic process		hydrolase activity			ovary(1)	1		all_cancers(4;2.79e-10)|Prostate(4;1.68e-15)|all_epithelial(4;1.43e-09)|Colorectal(252;0.0381)|Breast(4;0.141)|Melanoma(5;0.2)|all_hematologic(4;0.222)		Colorectal(12;1.02e-05)|COAD - Colon adenocarcinoma(12;1.54e-05)		CACAAAGTACTTAAAAAGTCC	0.259000												
LIPF	8513	broad.mit.edu	37	10	90428495	90428495	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:90428495T>A	uc001kfg.1	+	4	570	c.404T>A	c.(403-405)GTT>GAT	p.V135D	LIPF_uc009xtk.2_Missense_Mutation_p.V135D|LIPF_uc001kfh.1_Missense_Mutation_p.V112D|LIPF_uc010qmt.1_Missense_Mutation_p.V145D|LIPF_uc010qmu.1_Missense_Mutation_p.V102D	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	135					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		CCAGATTCAGTTGAATTCTGG	0.428000												
HTR7	3363	broad.mit.edu	37	10	92508893	92508893	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:92508893A>G	uc001kha.2	-	2	1241	c.998T>C	c.(997-999)GTC>GCC	p.V333A	HTR7_uc001kgz.2_Missense_Mutation_p.V333A|HTR7_uc001khb.2_Missense_Mutation_p.V333A	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	333	Helical; Name=6; (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	AAAGGCCCCGACGATGATCCC	0.537000												
BTAF1	9044	broad.mit.edu	37	10	93741866	93741866	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:93741866A>T	uc001khr.2	+	17	2030	c.1932A>T	c.(1930-1932)CAA>CAT	p.Q644H	BTAF1_uc001khs.1_Missense_Mutation_p.Q314H|BTAF1_uc001kht.1_Missense_Mutation_p.Q82H	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	644					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				AGGTGCGCCAAGGCCAAAGCC	0.423000												
GPR120	338557	broad.mit.edu	37	10	95326534	95326534	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:95326534A>C	uc010qnt.1	+	1	113	c.57A>C	c.(55-57)CAA>CAC	p.Q19H	GPR120_uc010qnu.1_Missense_Mutation_p.Q19H	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	19	Extracellular (Potential).				negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				GCCTGGAGCAAGCCAACCGCA	0.687000												
C10orf129	142827	broad.mit.edu	37	10	96971666	96971666	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:96971666T>G	uc001kke.2	+	6	912	c.787T>G	c.(787-789)TTG>GTG	p.L263V	C10orf129_uc009xuu.1_Missense_Mutation_p.L173V	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	263					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		AACAGATGTCTTGTGGAGTCT	0.473000												
TM9SF3	56889	broad.mit.edu	37	10	98303924	98303924	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:98303924A>C	uc001kmm.3	-	9	1311	c.1094T>G	c.(1093-1095)CTT>CGT	p.L365R	TM9SF3_uc010qot.1_Missense_Mutation_p.L365R|TM9SF3_uc001kmn.1_Missense_Mutation_p.L134R	NM_020123	NP_064508	Q9HD45	TM9S3_HUMAN	transmembrane 9 superfamily member 3 precursor	365	Helical; (Potential).					integral to membrane	binding				0		Colorectal(252;0.158)		Epithelial(162;1.84e-09)|all cancers(201;2.84e-08)		AGCTGGGATAAGGAATGCCCC	0.363000												
SLIT1	6585	broad.mit.edu	37	10	98806540	98806540	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:98806540T>C	uc001kmw.2	-	18	1976	c.1724A>G	c.(1723-1725)AAC>AGC	p.N575S	SLIT1_uc009xvh.1_Missense_Mutation_p.N585S	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	575	LRR 13.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		TGACACCTTGTTGTTGCTCAG	0.607000												
DNMBP	23268	broad.mit.edu	37	10	101715673	101715673	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:101715673T>C	uc001kqj.2	-	4	1650	c.1558A>G	c.(1558-1560)AGA>GGA	p.R520G	NCRNA00093_uc001kqk.1_Intron	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	520					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		ATCTCCAATCTCTCTGAGATG	0.502000												
SEC31B	25956	broad.mit.edu	37	10	102267705	102267705	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:102267705T>A	uc001krc.1	-	6	701	c.599A>T	c.(598-600)AAG>ATG	p.K200M	SEC31B_uc010qpo.1_Missense_Mutation_p.K199M|SEC31B_uc001krd.1_Translation_Start_Site|SEC31B_uc001krf.1_Translation_Start_Site|SEC31B_uc001kre.1_Translation_Start_Site|SEC31B_uc001krg.1_Translation_Start_Site|SEC31B_uc010qpp.1_Missense_Mutation_p.K203M|SEC31B_uc009xwn.1_Missense_Mutation_p.K200M|SEC31B_uc009xwo.1_Missense_Mutation_p.K200M|SEC31B_uc010qpq.1_Missense_Mutation_p.K43M|SEC31B_uc010qpr.1_RNA	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	200	WD 3.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		AGGTTCATTCTTCCTGAGATC	0.532000												
LZTS2	84445	broad.mit.edu	37	10	102762461	102762461	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:102762461T>G	uc001ksj.2	+	2	235	c.166T>G	c.(166-168)TTC>GTC	p.F56V	LZTS2_uc010qpw.1_Missense_Mutation_p.F56V|LZTS2_uc001ksk.2_Missense_Mutation_p.F56V|LZTS2_uc001ksl.2_Missense_Mutation_p.F56V|LZTS2_uc001ksm.2_RNA	NM_032429	NP_115805	Q9BRK4	LZTS2_HUMAN	leucine zipper, putative tumor suppressor 2	56	Required for centrosomal localization (By similarity).				cell division|mitosis|Wnt receptor signaling pathway	membrane|microtubule|microtubule organizing center				ovary(2)|large_intestine(1)|breast(1)	4				Epithelial(162;7.3e-09)|all cancers(201;3.72e-07)		GCCCACCTTCTTCCGCCAGCA	0.677000												
KCNIP2	30819	broad.mit.edu	37	10	103588422	103588422	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:103588422T>G	uc001kub.2	-	5	732	c.380A>C	c.(379-381)AAC>ACC	p.N127T	KCNIP2_uc010qqg.1_Missense_Mutation_p.N71T|KCNIP2_uc001ktx.2_RNA|KCNIP2_uc001kty.2_Missense_Mutation_p.T49P|KCNIP2_uc001ktz.2_Missense_Mutation_p.N82T|KCNIP2_uc009xwu.2_Missense_Mutation_p.N77T|KCNIP2_uc009xwv.2_Missense_Mutation_p.N77T|KCNIP2_uc001kuc.2_Missense_Mutation_p.N142T|KCNIP2_uc001kue.2_Missense_Mutation_p.N109T|KCNIP2_uc001kud.2_Missense_Mutation_p.N84T|KCNIP2_uc001kuf.2_Missense_Mutation_p.N77T|KCNIP2_uc001kua.2_Missense_Mutation_p.N58T|KCNIP2_uc009xww.2_RNA|KCNIP2_uc010qqh.1_Missense_Mutation_p.N82T|KCNIP2_uc010qqi.1_Missense_Mutation_p.N77T	NM_173191	NP_775283	Q9NS61	KCIP2_HUMAN	Kv channel interacting protein 2 isoform 2	127	EF-hand 1; degenerate.				clustering of voltage-gated potassium channels|detection of calcium ion|muscle contraction|regulation of heart contraction|signal transduction|synaptic transmission	cytoplasm|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|calcium ion binding|ER retention sequence binding|identical protein binding|protein N-terminus binding				0		Colorectal(252;0.122)		Epithelial(162;4.93e-09)|all cancers(201;2.63e-07)		CTGCTTGAAGTTCTCCTCATT	0.562000												
PSD	5662	broad.mit.edu	37	10	104164360	104164360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:104164360C>T	uc001kvg.1	-	15	3207	c.2680G>A	c.(2680-2682)GCT>ACT	p.A894T	PSD_uc001kve.1_Missense_Mutation_p.A102T|PSD_uc001kvf.1_Missense_Mutation_p.A263T|PSD_uc001kvh.1_Missense_Mutation_p.A515T|PSD_uc009xxd.1_Missense_Mutation_p.A894T	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	894					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		CGGGTGGCAGCGCTGGGCAGG	0.567000												
SFXN2	118980	broad.mit.edu	37	10	104492639	104492639	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:104492639A>C	uc001kwb.2	+	9	911	c.745A>C	c.(745-747)AGG>CGG	p.R249R	SFXN2_uc001kwc.2_RNA|SFXN2_uc001kwd.2_RNA	NM_178858	NP_849189	Q96NB2	SFXN2_HUMAN	sideroflexin 2	249	Helical; (Potential).				iron ion homeostasis	integral to membrane	cation transmembrane transporter activity				0		Colorectal(252;0.207)		Epithelial(162;4.53e-09)|all cancers(201;1.2e-07)|BRCA - Breast invasive adenocarcinoma(275;0.218)		CATCATGGAAAGGCTTGAGAA	0.547000												
CYP17A1	1586	broad.mit.edu	37	10	104597033	104597033	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:104597033T>A	uc001kwg.2	-	1	258	c.86A>T	c.(85-87)AAG>ATG	p.K29M		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	29					androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	CAGGAGGCTCTTGGGGTACTT	0.572000												
PDCD11	22984	broad.mit.edu	37	10	105202143	105202143	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:105202143T>C	uc001kwy.1	+	32	4968	c.4881T>C	c.(4879-4881)GCT>GCC	p.A1627A		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	1627	HAT 1.				mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		AGTACATGGCTTTCCACCTGC	0.612000												
GSTO2	119391	broad.mit.edu	37	10	106058929	106058929	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:106058929A>T	uc001kyb.2	+	7	1247	c.619A>T	c.(619-621)ATG>TTG	p.M207L	GSTO2_uc010qqx.1_Missense_Mutation_p.M173L|GSTO2_uc001kyc.2_Missense_Mutation_p.M179L|GSTO2_uc010qqy.1_Missense_Mutation_p.H109L	NM_183239	NP_899062	Q9H4Y5	GSTO2_HUMAN	glutathione S-transferase omega 2	207	GST C-terminal.				water-soluble vitamin metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.178)		Epithelial(162;1.14e-09)|all cancers(201;3.89e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0155)	Glutathione(DB00143)	GATATCAGCCATGAAGTGGGA	0.517000												
SORCS3	22986	broad.mit.edu	37	10	106970996	106970996	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:106970996T>G	uc001kyi.1	+	17	2590	c.2363T>G	c.(2362-2364)CTT>CGT	p.L788R	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	788	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CAAAGCTACCTTAACAGCACT	0.463000												
DUSP5	1847	broad.mit.edu	37	10	112257917	112257917	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:112257917A>G	uc001kzd.2	+	1	293	c.38A>G	c.(37-39)AAG>AGG	p.K13R		NM_004419	NP_004410	Q16690	DUS5_HUMAN	dual specificity phosphatase 5	13					endoderm formation|inactivation of MAPK activity	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1		Breast(234;0.0848)		Epithelial(162;0.000276)|all cancers(201;0.00465)|BRCA - Breast invasive adenocarcinoma(275;0.12)		CAGCTGCGCAAGATGCTCCGC	0.532000												
DUSP5	1847	broad.mit.edu	37	10	112257929	112257929	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:112257929A>G	uc001kzd.2	+	1	305	c.50A>G	c.(49-51)AAG>AGG	p.K17R		NM_004419	NP_004410	Q16690	DUS5_HUMAN	dual specificity phosphatase 5	17					endoderm formation|inactivation of MAPK activity	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1		Breast(234;0.0848)		Epithelial(162;0.000276)|all cancers(201;0.00465)|BRCA - Breast invasive adenocarcinoma(275;0.12)		ATGCTCCGCAAGGAGGCGGCG	0.522000												
ADRA2A	150	broad.mit.edu	37	10	112838854	112838854	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:112838854A>G	uc001kzo.2	+	1	2065	c.1100A>G	c.(1099-1101)GAG>GGG	p.E367G		NM_000681	NP_000672	P08913	ADA2A_HUMAN	alpha-2A-adrenergic receptor	352	Cytoplasmic (By similarity).			PRRGPGATGIGTPAAGPGEERVGAAKASRWRGR -> RGAG RGRRGSGRRLQGRGRSASGLPRRRAGAGG (in Ref. 1; AAA51664 and 2; AAA51665).	actin cytoskeleton organization|activation of MAPK activity by adrenergic receptor signaling pathway|activation of phospholipase C activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cellular component movement|cellular response to hormone stimulus|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|glucose homeostasis|inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway|intestinal absorption|negative regulation of adrenergic receptor signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cAMP biosynthetic process|negative regulation of epinephrine secretion|negative regulation of insulin secretion involved in cellular response to glucose stimulus|negative regulation of lipid catabolic process|negative regulation of norepinephrine secretion|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cytokine production|positive regulation of membrane protein ectodomain proteolysis|positive regulation of potassium ion transport|positive regulation of wound healing|Rho protein signal transduction	basolateral plasma membrane|cytoplasm|integral to plasma membrane|receptor complex	alpha-1B adrenergic receptor binding|alpha-2C adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|heterotrimeric G-protein binding|norepinephrine binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|thioesterase binding				0		Breast(234;0.0735)|Lung NSC(174;0.238)		Epithelial(162;0.000316)|all cancers(201;0.00501)|BRCA - Breast invasive adenocarcinoma(275;0.118)	Amitriptyline(DB00321)|Amphetamine(DB00182)|Apraclonidine(DB00964)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Brimonidine(DB00484)|Clonidine(DB00575)|Debrisoquin(DB04840)|Dexmedetomidine(DB00633)|Dipivefrin(DB00449)|Epinastine(DB00751)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanabenz(DB00629)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Lofexidine(DB04948)|Methyldopa(DB00968)|Mianserin(DB06148)|Mirtazapine(DB00370)|Norepinephrine(DB00368)|Oxymetazoline(DB00935)|Phentolamine(DB00692)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Tizanidine(DB00697)|Trazodone(DB00656)|Yohimbine(DB01392)	CCGGGGGAGGAGCGCGTCGGG	0.652000												
TDRD1	56165	broad.mit.edu	37	10	115959054	115959054	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:115959054T>G	uc001lbg.1	+	4	660	c.507T>G	c.(505-507)ACT>ACG	p.T169T	TDRD1_uc001lbf.2_Silent_p.T160T|TDRD1_uc001lbh.1_Silent_p.T160T|TDRD1_uc001lbi.1_Silent_p.T160T	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	169					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		GGTCCACAACTTGCCATCGCT	0.403000												
AFAP1L2	84632	broad.mit.edu	37	10	116055820	116055820	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:116055820T>A	uc001lbn.2	-	19	2739	c.2438A>T	c.(2437-2439)GAG>GTG	p.E813V	AFAP1L2_uc001lbo.2_Missense_Mutation_p.E809V|AFAP1L2_uc010qse.1_Missense_Mutation_p.E866V|AFAP1L2_uc001lbp.2_Missense_Mutation_p.E837V|AFAP1L2_uc001lbm.2_Missense_Mutation_p.E252V|AFAP1L2_uc010qsd.1_Missense_Mutation_p.E375V|AFAP1L2_uc001lbq.1_3'UTR	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	813					inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		TCCTTTCTTCTCCCATTCCTA	0.403000												
PNLIP	5406	broad.mit.edu	37	10	118320982	118320982	+	Splice_Site	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:118320982A>G	uc001lcm.2	+	12	1213	c.1170_splice	c.e12-2	p.K390_splice		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor						lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	TTAAATCCTTAGGGGCACTCT	0.244000												
ZRANB1	54764	broad.mit.edu	37	10	126631424	126631424	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:126631424A>G	uc001lic.2	+	1	733	c.362A>G	c.(361-363)CAG>CGG	p.Q121R	ZRANB1_uc010qug.1_Missense_Mutation_p.Q147R	NM_017580	NP_060050	Q9UGI0	ZRAN1_HUMAN	zinc finger, RAN-binding domain containing 1	121					positive regulation of Wnt receptor signaling pathway|protein K63-linked deubiquitination|Wnt receptor signaling pathway	aggresome|centrosome|intermediate filament cytoskeleton|nucleolus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(145;0.0132)|Lung NSC(174;0.0193)|all_neural(114;0.116)|Colorectal(57;0.172)		Colorectal(40;0.113)|COAD - Colon adenocarcinoma(40;0.119)		GAATCTCCTCAGTCCTCAGGA	0.453000												
C10orf137	26098	broad.mit.edu	37	10	127412388	127412388	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:127412388A>C	uc001liq.1	+	4	686	c.393A>C	c.(391-393)AAA>AAC	p.K131N	C10orf137_uc001lin.2_Missense_Mutation_p.K131N|C10orf137_uc001lio.1_Missense_Mutation_p.K131N|C10orf137_uc001lip.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	131					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				AGAACATAAAAAAACTCCTGA	0.328000												
C10orf90	118611	broad.mit.edu	37	10	128202463	128202463	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:128202463T>G	uc001ljq.2	-	2	189	c.68A>C	c.(67-69)AAA>ACA	p.K23T	C10orf90_uc010qum.1_Missense_Mutation_p.K120T|C10orf90_uc009yao.2_Missense_Mutation_p.K120T|C10orf90_uc001ljs.1_5'UTR	NM_001004298	NP_001004298	Q96M02	CJ090_HUMAN	hypothetical protein LOC118611	23										ovary(1)|skin(1)	2		all_epithelial(44;4.51e-05)|all_lung(145;0.0068)|Lung NSC(174;0.0105)|Colorectal(57;0.0848)|all_neural(114;0.0936)|Breast(234;0.203)		COAD - Colon adenocarcinoma(40;0.0442)|Colorectal(40;0.0479)		CTGGAGATTTTTAAGGGCAAT	0.353000												
BNIP3	664	broad.mit.edu	37	10	133787304	133787304	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:133787304A>C	uc001lkv.1	-	2	316	c.190T>G	c.(190-192)TGT>GGT	p.C64G	BNIP3_uc010qut.1_Missense_Mutation_p.C64G	NM_004052	NP_004043	Q12983	BNIP3_HUMAN	BCL2/adenovirus E1B 19kD-interacting protein 3	64					cellular response to cobalt ion|cellular response to hypoxia|cellular response to mechanical stimulus|chromatin remodeling|defense response to virus|DNA fragmentation involved in apoptotic nuclear change|induction of apoptosis|interspecies interaction between organisms|mitochondrial fragmentation involved in apoptosis|negative regulation of membrane potential|negative regulation of mitochondrial fusion|negative regulation of survival gene product expression|neuron apoptosis|positive regulation of mitochondrial fission|positive regulation of protein complex disassembly|positive regulation of release of cytochrome c from mitochondria|reactive oxygen species metabolic process|regulation of mitochondrial membrane permeability	dendrite|integral to mitochondrial outer membrane|nuclear envelope|nucleoplasm	GTPase binding|protein heterodimerization activity|protein homodimerization activity			lung(1)|skin(1)	2		all_cancers(35;4e-11)|all_epithelial(44;5.07e-08)|Ovarian(717;2.61e-05)|Lung NSC(174;0.00237)|all_lung(145;0.00354)|Breast(234;0.023)|all_neural(114;0.0299)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)		Epithelial(32;1.59e-12)|all cancers(32;3.75e-11)|OV - Ovarian serous cystadenocarcinoma(35;2.57e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		TACCTGTCACAGTGAGAGCTC	0.512000												
NKX6-2	84504	broad.mit.edu	37	10	134598505	134598505	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:134598505T>G	uc001llr.2	-	3	834	c.749A>C	c.(748-750)AAG>ACG	p.K250T		NM_177400	NP_796374	Q9C056	NKX62_HUMAN	NK6 transcription factor related, locus 2	250						nucleus	sequence-specific DNA binding transcription factor activity				0		all_cancers(35;2.79e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0584)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;4.06e-05)|Epithelial(32;5.53e-05)|all cancers(32;5.99e-05)		CCGCGTGATCTTCTCGTCGTC	0.682000												
NUP98	4928	broad.mit.edu	37	11	3712682	3712682	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:3712682A>C	uc001lyh.2	-	28	4640	c.4349T>G	c.(4348-4350)CTT>CGT	p.L1450R	NUP98_uc001lyi.2_Missense_Mutation_p.L1450R|NUP98_uc001lyg.2_Missense_Mutation_p.L415R	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	1467					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		ATACGAAGGAAGTGGGGAGCA	0.423000			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML							
OR51A4	401666	broad.mit.edu	37	11	4967444	4967444	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:4967444T>C	uc010qys.1	-	1	887	c.887A>G	c.(886-888)AAA>AGA	p.K296R		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTGTTTAGTTTTTACACAATA	0.398000												
OR51L1	119682	broad.mit.edu	37	11	5020534	5020534	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:5020534A>G	uc010qyu.1	+	1	322	c.322A>G	c.(322-324)ACA>GCA	p.T108A		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTTCATCCACACATTCACATT	0.517000												
OR51L1	119682	broad.mit.edu	37	11	5021063	5021063	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:5021063T>C	uc010qyu.1	+	1	851	c.851T>C	c.(850-852)CTT>CCT	p.L284P		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATCTACCTTCTTCTTCCCCCA	0.448000												
OR51V1	283111	broad.mit.edu	37	11	5220987	5220987	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:5220987A>G	uc010qyz.1	-	1	944	c.944T>C	c.(943-945)CTC>CCC	p.L315P		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	315	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGAGAAAAGAGTCTAAGCAT	0.343000												
OR51Q1	390061	broad.mit.edu	37	11	5444107	5444107	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:5444107A>C	uc010qzd.1	+	1	677	c.677A>C	c.(676-678)AAT>ACT	p.N226T	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATTCTGAAAAATATCTTGGGC	0.488000												
OR51I2	390064	broad.mit.edu	37	11	5475026	5475026	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:5475026T>G	uc010qzf.1	+	1	308	c.308T>G	c.(307-309)CTT>CGT	p.L103R	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGATGTTTCTTATTCACTTC	0.488000												
OR52E6	390078	broad.mit.edu	37	11	5862229	5862229	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:5862229A>C	uc010qzq.1	-	1	899	c.899T>G	c.(898-900)ATT>AGT	p.I300S	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTCTCCCTAATATGTTTGGT	0.433000												
OR56A4	120793	broad.mit.edu	37	11	6024227	6024227	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:6024227A>T	uc010qzv.1	-	1	152	c.152T>A	c.(151-153)CTT>CAT	p.L51H		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	200	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCCATGTAAAGTTTCCTGAT	0.468000												
OR10A4	283297	broad.mit.edu	37	11	6898191	6898191	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:6898191T>A	uc010rat.1	+	1	313	c.313T>A	c.(313-315)TTC>ATC	p.F105I		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GATGTATTTCTTCTTCTTTTT	0.517000												
NLRP14	338323	broad.mit.edu	37	11	7060994	7060994	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:7060994A>C	uc001mfb.1	+	3	662	c.339A>C	c.(337-339)CAA>CAC	p.Q113H		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	113					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GAGAGACACAAGAAGATCAGG	0.473000												
SYT9	143425	broad.mit.edu	37	11	7439233	7439233	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:7439233A>G	uc001mfe.2	+	5	1448	c.1211A>G	c.(1210-1212)AAG>AGG	p.K404R	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	404	Cytoplasmic (Potential).|C2 2.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		AGACGACTGAAGAAGAGGAAA	0.463000												
OLFML1	283298	broad.mit.edu	37	11	7509423	7509423	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:7509423A>T	uc001mfi.2	+	2	547	c.195A>T	c.(193-195)AAA>AAT	p.K65N	uc001mff.1_Intron|OLFML1_uc001mfh.1_Missense_Mutation_p.K65N|OLFML1_uc010raz.1_Intron|OLFML1_uc010rba.1_Missense_Mutation_p.K65N	NM_198474	NP_940876	Q6UWY5	OLFL1_HUMAN	olfactomedin-like 1 precursor	65						extracellular region				ovary(2)	2				Epithelial(150;6.96e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		AGTTCTCAAAAAATATATCTG	0.423000												
DENND5A	23258	broad.mit.edu	37	11	9225542	9225542	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:9225542T>C	uc001mhl.2	-	4	869	c.614A>G	c.(613-615)AAG>AGG	p.K205R	DENND5A_uc010rbw.1_Missense_Mutation_p.K205R|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	205	DENN.									liver(1)	1						GCAGATGCACTTAGAGACGTA	0.547000												
IPO7	10527	broad.mit.edu	37	11	9446534	9446534	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:9446534A>T	uc001mho.2	+	11	1357	c.1215A>T	c.(1213-1215)AAA>AAT	p.K405N		NM_006391	NP_006382	O95373	IPO7_HUMAN	importin 7	405					interspecies interaction between organisms|signal transduction	Golgi apparatus|nuclear pore|soluble fraction	protein transporter activity|Ran GTPase binding|small GTPase regulator activity			lung(1)|breast(1)	2				all cancers(16;8.29e-09)|Epithelial(150;4.76e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0217)		GTAAGAGGAAAGAGGTAGGCT	0.303000												
ZNF143	7702	broad.mit.edu	37	11	9522759	9522759	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:9522759A>C	uc001mhr.2	+	11	1207	c.1089A>C	c.(1087-1089)GGA>GGC	p.G363G	ZNF143_uc009yfu.2_Silent_p.G362G|ZNF143_uc010rby.1_Silent_p.G332G	NM_003442	NP_003433	P52747	ZN143_HUMAN	zinc finger protein 143	363	C2H2-type 5.				regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding|zinc ion binding				0				all cancers(16;4.12e-09)|Epithelial(150;2.29e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0212)		CAGAGCCAGGATGTGGGAGGG	0.438000												
MRVI1	10335	broad.mit.edu	37	11	10622466	10622466	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:10622466A>T	uc010rcc.1	-	15	2402	c.2016T>A	c.(2014-2016)TCT>TCA	p.S672S	MRVI1_uc001miw.2_Silent_p.S663S|MRVI1_uc010rcb.1_Silent_p.S664S|MRVI1_uc009ygb.1_Silent_p.S357S|MRVI1_uc001mix.2_Silent_p.S357S|MRVI1_uc001miz.2_Silent_p.S581S|MRVI1_uc009ygc.1_Silent_p.S581S|MRVI1_uc010rcd.1_Silent_p.S466S|MRVI1_uc009ygd.1_Silent_p.S357S|MRVI1_uc010rce.1_RNA	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	645					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		GGTCCTTACCAGAGGGGCCAC	0.507000												
ARNTL	406	broad.mit.edu	37	11	13388329	13388329	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:13388329A>T	uc001mkr.2	+	11	1078	c.670A>T	c.(670-672)ACT>TCT	p.T224S	ARNTL_uc001mko.2_Missense_Mutation_p.T181S|ARNTL_uc001mkp.2_Missense_Mutation_p.T224S|ARNTL_uc001mkq.2_Missense_Mutation_p.T224S|ARNTL_uc001mks.2_Missense_Mutation_p.T181S|ARNTL_uc001mkt.2_Missense_Mutation_p.T224S|ARNTL_uc001mku.2_RNA|ARNTL_uc009ygm.1_Missense_Mutation_p.T181S|ARNTL_uc001mkv.1_Missense_Mutation_p.T181S|ARNTL_uc001mkw.2_Missense_Mutation_p.T181S|ARNTL_uc001mkx.2_Missense_Mutation_p.T222S	NM_001178	NP_001169	O00327	BMAL1_HUMAN	aryl hydrocarbon receptor nuclear	224					circadian rhythm|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	aryl hydrocarbon receptor binding|DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0				Epithelial(150;0.0243)		AGATGCAAAAAGTGAGTACCA	0.557000												
NAV2	89797	broad.mit.edu	37	11	19955499	19955499	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:19955499A>T	uc010rdm.1	+	8	2139	c.1778A>T	c.(1777-1779)AAA>ATA	p.K593I	NAV2_uc001mpp.2_Missense_Mutation_p.K506I|NAV2_uc001mpr.3_Missense_Mutation_p.K570I	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	593						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						CCAGGAATGAAAAGCATGCCC	0.597000												
SLC17A6	57084	broad.mit.edu	37	11	22396414	22396414	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:22396414A>T	uc001mqk.2	+	9	1568	c.1155A>T	c.(1153-1155)AGA>AGT	p.R385S		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	385	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						CGACAGTGAGAAAGATCATGA	0.368000												
SLC5A12	159963	broad.mit.edu	37	11	26725161	26725161	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:26725161A>C	uc001mra.2	-	6	1051	c.738T>G	c.(736-738)ACT>ACG	p.T246T	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Silent_p.T246T	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	246	Helical; (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						GCCAAGTAAAAGTTCCTCCCA	0.413000												
BDNF	627	broad.mit.edu	37	11	27679542	27679542	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:27679542A>C	uc010rdu.1	-	2	1421	c.570T>G	c.(568-570)GGT>GGG	p.G190G	BDNFOS_uc001mrm.2_Intron|BDNFOS_uc009yij.2_Intron|BDNFOS_uc009yik.2_Intron|BDNFOS_uc009yil.2_Intron|BDNFOS_uc001mrp.2_Intron|BDNFOS_uc009yim.2_Intron|BDNFOS_uc009yin.2_Intron|BDNFOS_uc009yio.2_Intron|BDNFOS_uc009yip.2_Intron|BDNFOS_uc001mrn.2_Intron|BDNFOS_uc009yiq.2_Intron|BDNFOS_uc001mro.2_Intron|BDNFOS_uc009yir.2_Intron|BDNFOS_uc009yis.2_Intron|BDNFOS_uc009yit.2_Intron|BDNFOS_uc009yiu.2_Intron|BDNFOS_uc009yiv.2_Intron|BDNFOS_uc009yiw.2_Intron|BDNFOS_uc009yix.2_Intron|BDNFOS_uc009yiy.2_Intron|BDNFOS_uc009yiz.2_Intron|BDNFOS_uc001mrq.3_Intron|BDNFOS_uc001mrr.3_Intron|BDNFOS_uc009yja.2_Intron|BDNFOS_uc009yjb.2_Intron|BDNF_uc010rdv.1_Silent_p.G190G|BDNF_uc001mrt.2_Silent_p.G205G|BDNF_uc010rdw.1_Silent_p.G190G|BDNF_uc009yjd.2_Silent_p.G190G|BDNF_uc001mru.2_Silent_p.G190G|BDNF_uc010rdx.1_Silent_p.G190G|BDNF_uc010rdy.1_Silent_p.G190G|BDNF_uc009yjg.2_Silent_p.G190G|BDNF_uc009yje.2_Silent_p.G272G|BDNF_uc009yjf.2_Silent_p.G219G|BDNF_uc001mrv.2_Silent_p.G190G|BDNF_uc001mrw.3_Silent_p.G190G|BDNF_uc001mrx.2_Silent_p.G190G|BDNF_uc001mry.3_Silent_p.G190G|BDNF_uc001mrz.3_Silent_p.G190G|BDNF_uc001msa.2_Silent_p.G198G	NM_001143816	NP_001137288	P23560	BDNF_HUMAN	brain-derived neurotrophic factor isoform a	190						extracellular region	growth factor activity				0						CTTTTGTGTAACCCATGGGAT	0.517000												
BDNF	627	broad.mit.edu	37	11	27679792	27679792	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:27679792A>G	uc010rdu.1	-	2	1171	c.320T>C	c.(319-321)CTC>CCC	p.L107P	BDNFOS_uc001mrm.2_RNA|BDNFOS_uc009yij.2_RNA|BDNFOS_uc009yik.2_RNA|BDNFOS_uc009yil.2_RNA|BDNFOS_uc001mrp.2_RNA|BDNFOS_uc009yim.2_RNA|BDNFOS_uc009yin.2_RNA|BDNFOS_uc009yio.2_RNA|BDNFOS_uc009yip.2_RNA|BDNFOS_uc001mrn.2_RNA|BDNFOS_uc009yiq.2_RNA|BDNFOS_uc001mro.2_RNA|BDNFOS_uc009yir.2_RNA|BDNFOS_uc009yis.2_Intron|BDNFOS_uc009yit.2_RNA|BDNFOS_uc009yiu.2_RNA|BDNFOS_uc009yiv.2_RNA|BDNFOS_uc009yiw.2_RNA|BDNFOS_uc009yix.2_RNA|BDNFOS_uc009yiy.2_RNA|BDNFOS_uc009yiz.2_RNA|BDNFOS_uc001mrq.3_RNA|BDNFOS_uc001mrr.3_RNA|BDNFOS_uc009yja.2_RNA|BDNFOS_uc009yjb.2_RNA|BDNF_uc010rdv.1_Missense_Mutation_p.L107P|BDNF_uc001mrt.2_Missense_Mutation_p.L122P|BDNF_uc010rdw.1_Missense_Mutation_p.L107P|BDNF_uc009yjd.2_Missense_Mutation_p.L107P|BDNF_uc001mru.2_Missense_Mutation_p.L107P|BDNF_uc010rdx.1_Missense_Mutation_p.L107P|BDNF_uc010rdy.1_Missense_Mutation_p.L107P|BDNF_uc009yjg.2_Missense_Mutation_p.L107P|BDNF_uc009yje.2_Missense_Mutation_p.L189P|BDNF_uc009yjf.2_Missense_Mutation_p.L136P|BDNF_uc001mrv.2_Missense_Mutation_p.L107P|BDNF_uc001mrw.3_Missense_Mutation_p.L107P|BDNF_uc001mrx.2_Missense_Mutation_p.L107P|BDNF_uc001mry.3_Missense_Mutation_p.L107P|BDNF_uc001mrz.3_Missense_Mutation_p.L107P|BDNF_uc001msa.2_Missense_Mutation_p.L115P	NM_001143816	NP_001137288	P23560	BDNF_HUMAN	brain-derived neurotrophic factor isoform a	107						extracellular region	growth factor activity				0						CAGCAGAAAGAGAAGAGGAGG	0.532000												
PAMR1	25891	broad.mit.edu	37	11	35547122	35547122	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:35547122A>G	uc001mwg.2	-	1	55	c.12T>C	c.(10-12)GGT>GGC	p.G4G	PAMR1_uc001mwf.2_Silent_p.G4G|PAMR1_uc010rew.1_Silent_p.G4G|PAMR1_uc010rex.1_Intron	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	4					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						GCGTCCAGCAACCCAGCTCCA	0.637000												
SYT13	57586	broad.mit.edu	37	11	45265838	45265838	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:45265838T>G	uc001myq.2	-	6	1172	c.1046A>C	c.(1045-1047)AAG>ACG	p.K349T	SYT13_uc009yku.1_Missense_Mutation_p.K205T	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	349	C2 2.|Cytoplasmic (Potential).					transport vesicle				ovary(1)	1						GATCTTGTGCTTAGCTCGTTT	0.557000												
AGBL2	79841	broad.mit.edu	37	11	47689161	47689161	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:47689161T>G	uc001ngg.2	-	15	2402	c.2302A>C	c.(2302-2304)AAT>CAT	p.N768H	AGBL2_uc001ngf.2_RNA|AGBL2_uc010rhq.1_Missense_Mutation_p.N730H	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	768					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						TGCATCAAATTTTTTTTCTGA	0.353000												
OR5D13	390142	broad.mit.edu	37	11	55541717	55541717	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:55541717T>G	uc010ril.1	+	1	804	c.804T>G	c.(802-804)ACT>ACG	p.T268T		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				ATCCTAAAACTTCTAGCCTCA	0.438000												
OR5D16	390144	broad.mit.edu	37	11	55606614	55606614	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:55606614C>T	uc010rio.1	+	1	387	c.387C>T	c.(385-387)TGC>TGT	p.C129C		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				TGGCCATTTGCAATCCTCTGC	0.463000												
SPRYD5	84767	broad.mit.edu	37	11	55658772	55658772	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:55658772T>C	uc010rip.1	+	7	1115	c.1023T>C	c.(1021-1023)TAT>TAC	p.Y341Y	SPRYD5_uc010riq.1_Silent_p.Y198Y	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	341	B30.2/SPRY.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				CTGGCAAATATTATTGGGAGG	0.428000												
OR5M11	219487	broad.mit.edu	37	11	56309940	56309940	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:56309940T>G	uc010rjl.1	-	1	794	c.794A>C	c.(793-795)AAG>ACG	p.K265T		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTCAACAGTCTTATCTGTTGG	0.418000												
OR1S2	219958	broad.mit.edu	37	11	57971212	57971212	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:57971212A>C	uc010rkb.1	-	1	442	c.442T>G	c.(442-444)TTC>GTC	p.F148V		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	148	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GCCCGCATGAAAGTTGTATAG	0.463000												
OR4D10	390197	broad.mit.edu	37	11	59244981	59244981	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:59244981T>G	uc001nnz.1	+	1	79	c.79T>G	c.(79-81)TTA>GTA	p.L27V		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						GAGCTTAGTCTTATTTCTTTT	0.433000												
PATL1	219988	broad.mit.edu	37	11	59410351	59410351	+	Splice_Site	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:59410351A>G	uc001noe.3	-	16	2192	c.2049_splice	c.e16+1	p.K683_splice		NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog						cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						GGGCAAGATCACCTTGTTCTG	0.433000												
MS4A7	58475	broad.mit.edu	37	11	60152695	60152695	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:60152695T>C	uc001npe.2	+	3	427	c.282T>C	c.(280-282)TGT>TGC	p.C94C	MS4A7_uc001npf.2_Silent_p.C94C|MS4A7_uc001npg.2_Intron|MS4A7_uc001nph.2_Intron|MS4A14_uc001npi.2_Intron|MS4A7_uc009ymx.1_Intron	NM_206939	NP_996822	Q9GZW8	MS4A7_HUMAN	membrane-spanning 4-domains, subfamily A, member	94	Helical; (Potential).					integral to membrane	receptor activity			ovary(1)|central_nervous_system(1)	2						GAGCTCTGTGTGTGAGTAGAA	0.498000												
AHNAK	79026	broad.mit.edu	37	11	62286461	62286461	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:62286461A>C	uc001ntl.2	-	5	15728	c.15428T>G	c.(15427-15429)GTC>GGC	p.V5143G	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	5143					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TGGCATCTTGACCTTGGGAGC	0.522000												
SLC22A9	114571	broad.mit.edu	37	11	63175638	63175638	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:63175638T>C	uc001nww.2	+	8	1611	c.1343T>C	c.(1342-1344)CTT>CCT	p.L448P	SLC22A9_uc001nwx.2_Intron	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	448	Helical; (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						GCGTCTGCTCTTGCCAATACC	0.478000												
SLC22A9	114571	broad.mit.edu	37	11	63177296	63177296	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:63177296A>C	uc001nww.2	+	10	1892	c.1624A>C	c.(1624-1626)AAG>CAG	p.K542Q	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	542	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						CAGAGAACCAAAGCAAGAGGA	0.423000												
RTN3	10313	broad.mit.edu	37	11	63487765	63487765	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:63487765A>C	uc001nxq.2	+	3	1978	c.1791A>C	c.(1789-1791)GAA>GAC	p.E597D	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Missense_Mutation_p.E578D|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Missense_Mutation_p.E485D|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	597					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						ATGTGAGTGAAGTTGCTCCTG	0.408000												
CATSPER1	117144	broad.mit.edu	37	11	65792743	65792743	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:65792743T>C	uc001ogt.2	-	1	1246	c.1108A>G	c.(1108-1110)ATC>GTC	p.I370V		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	370	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						CGTGAGCGGATTGTGCTGGAG	0.552000												
B3GNT1	11041	broad.mit.edu	37	11	66113626	66113626	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:66113626T>G	uc001ohr.2	-	2	1287	c.1142A>C	c.(1141-1143)AAG>ACG	p.K381T	BRMS1_uc001ohp.1_5'Flank|BRMS1_uc001oho.1_5'Flank	NM_006876	NP_006867	O43505	B3GN1_HUMAN	UDP-GlcNAc:betaGal	381	Lumenal (Potential).				poly-N-acetyllactosamine biosynthetic process	integral to Golgi membrane	N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity				0						GGGATGGAACTTCAACGCTTC	0.502000												
CTSF	8722	broad.mit.edu	37	11	66333365	66333365	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:66333365T>A	uc001oip.2	-	7	991	c.901A>T	c.(901-903)ACA>TCA	p.T301S		NM_003793	NP_003784	Q9UBX1	CATF_HUMAN	cathepsin F precursor	301					proteolysis	lysosome	cysteine-type endopeptidase activity				0						ACATTGCCTGTGACTGAGAAG	0.612000												
ALDH3B1	221	broad.mit.edu	37	11	67789236	67789236	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:67789236T>G	uc010rpy.1	+	8	961	c.845T>G	c.(844-846)CTG>CGG	p.L282R	ALDH3B1_uc001omz.2_Missense_Mutation_p.L282R|ALDH3B1_uc001ona.2_Missense_Mutation_p.L245R|ALDH3B1_uc001onb.2_RNA	NM_001161473	NP_001154945	P43353	AL3B1_HUMAN	aldehyde dehydrogenase 3B1 isoform a	282					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase				0					NADH(DB00157)	TCCCCAAACCTGGGCCGCATC	0.627000											OREG0021141	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
CTTN	2017	broad.mit.edu	37	11	70279801	70279801	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:70279801T>C	uc001opv.3	+	17	1699	c.1493T>C	c.(1492-1494)GTC>GCC	p.V498A	CTTN_uc001opu.2_Missense_Mutation_p.V461A|CTTN_uc001opw.3_Missense_Mutation_p.V461A|CTTN_uc010rqm.1_Missense_Mutation_p.V182A|CTTN_uc001opx.2_Missense_Mutation_p.V182A	NM_005231	NP_005222	Q14247	SRC8_HUMAN	cortactin isoform a	498	SH3.					cell cortex|cytoskeleton|lamellipodium|ruffle|soluble fraction	protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(2;4.34e-41)|LUSC - Lung squamous cell carcinoma(11;1.51e-13)|STAD - Stomach adenocarcinoma(18;0.0513)	Lung(977;0.0234)|LUSC - Lung squamous cell carcinoma(976;0.133)		ATCACAGCCGTCGCCCTGTAC	0.547000												
KRTAP5-9	3846	broad.mit.edu	37	11	71260091	71260091	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:71260091T>G	uc001oqs.1	+	1	626	c.388T>G	c.(388-390)TGC>GGC	p.C130G		NM_005553	NP_005544	P26371	KRA59_HUMAN	keratin associated protein 5-9	130	8 X 4 AA repeats of C-C-X-P.|6.				epidermis development	keratin filament					0						CCAATCCAGCTGCTGCAAGCC	0.627000												
FOLR3	2352	broad.mit.edu	37	11	71850819	71850819	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:71850819T>G	uc001ory.1	+	5	858	c.808T>G	c.(808-810)TTC>GTC	p.F270V	FOLR3_uc001orx.1_Missense_Mutation_p.F228V			P41439	FOLR3_HUMAN	SubName: Full=FOLR3 protein; Flags: Fragment;	226					folic acid transport	extracellular region|extrinsic to membrane|membrane fraction	folic acid binding|receptor activity				0					Folic Acid(DB00158)	GGTGGCCAAGTTCTATGCTGC	0.547000												
C2CD3	26005	broad.mit.edu	37	11	73785595	73785595	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:73785595A>C	uc001ouu.2	-	24	4881	c.4654T>G	c.(4654-4656)TTG>GTG	p.L1552V	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1552						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					TGAACTCGCAAGGCAGCTCCT	0.502000												
P4HA3	283208	broad.mit.edu	37	11	73996867	73996867	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:73996867A>G	uc001ouz.2	-	7	1140	c.1097T>C	c.(1096-1098)CTT>CCT	p.L366P	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Missense_Mutation_p.L366P	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	366						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					TGGTTCTGCAAGTTCTCTAAT	0.498000												
PGM2L1	283209	broad.mit.edu	37	11	74058298	74058298	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:74058298T>C	uc001ovb.1	-	7	1130	c.834A>G	c.(832-834)AAA>AAG	p.K278K		NM_173582	NP_775853	Q6PCE3	PGM2L_HUMAN	phosphoglucomutase 2-like 1	278					glucose 1-phosphate metabolic process	cytosol	glucose-1,6-bisphosphate synthase activity|phosphoglucomutase activity			ovary(1)	1	Breast(11;3.32e-06)					AACCAAACACTTTAAAAGCCA	0.403000												
NEU3	10825	broad.mit.edu	37	11	74717517	74717517	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:74717517A>G	uc001ovw.2	+	3	1522	c.1366A>G	c.(1366-1368)AGC>GGC	p.S456G	NEU3_uc001ovv.2_Missense_Mutation_p.S446G|NEU3_uc010rrl.1_Missense_Mutation_p.S347G|uc010rrm.1_5'Flank|uc001ovx.1_5'Flank	NM_006656	NP_006647	A8K327	A8K327_HUMAN	sialidase 3	456										ovary(2)	2						TAGGAACCCAAGCCAATTCAA	0.483000												
MYO7A	4647	broad.mit.edu	37	11	76917198	76917198	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:76917198A>T	uc001oyb.2	+	41	5965	c.5693A>T	c.(5692-5694)AAG>ATG	p.K1898M	MYO7A_uc001oyc.2_Missense_Mutation_p.K1860M|MYO7A_uc001oye.2_RNA	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1898					actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						ATCCAGCACAAGACCACCCAG	0.542000												
CLNS1A	1207	broad.mit.edu	37	11	77336835	77336835	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:77336835T>G	uc001oyk.2	-	3	383	c.291A>C	c.(289-291)GAA>GAC	p.E97D	CLNS1A_uc001oyl.2_Intron	NM_001293	NP_001284	P54105	ICLN_HUMAN	chloride channel, nucleotide-sensitive, 1A	97					blood circulation|cell volume homeostasis|chloride transport|ncRNA metabolic process|spliceosomal snRNP assembly	cytoskeleton|cytosol|nucleus|plasma membrane	protein binding			ovary(1)	1	all_cancers(14;5.43e-17)|all_epithelial(13;1.78e-19)		Epithelial(5;1.02e-48)|BRCA - Breast invasive adenocarcinoma(5;1.4e-30)			CTTCCTCTTCTTCATCAGCAA	0.308000												
ODZ4	26011	broad.mit.edu	37	11	78380755	78380755	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:78380755A>G	uc001ozl.3	-	32	7098	c.6635T>C	c.(6634-6636)CTC>CCC	p.L2212P	ODZ4_uc001ozk.3_Missense_Mutation_p.L437P|ODZ4_uc009yvb.1_Missense_Mutation_p.L796P	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2212	Extracellular (Potential).|YD 18.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GTAGCGCCAGAGTGGCTTGTC	0.557000												
ODZ4	26011	broad.mit.edu	37	11	78381295	78381295	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:78381295A>C	uc001ozl.3	-	32	6558	c.6095T>G	c.(6094-6096)TTC>TGC	p.F2032C	ODZ4_uc001ozk.3_Missense_Mutation_p.F257C|ODZ4_uc009yvb.1_Missense_Mutation_p.F616C	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2032	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GTCATAGGTGAAACTGACCTT	0.537000												
ODZ4	26011	broad.mit.edu	37	11	78413446	78413446	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:78413446A>C	uc001ozl.3	-	28	4675	c.4212T>G	c.(4210-4212)GTT>GTG	p.V1404V	ODZ4_uc009yvb.1_5'UTR	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1404	Extracellular (Potential).|NHL 4.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ACTCCAGGTGAACCTGACAAT	0.418000												
CCDC81	60494	broad.mit.edu	37	11	86111788	86111788	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:86111788T>A	uc001pbx.1	+	7	1254	c.826T>A	c.(826-828)TTG>ATG	p.L276M	CCDC81_uc001pbw.1_Missense_Mutation_p.L186M|CCDC81_uc010rtq.1_Missense_Mutation_p.L59M|CCDC81_uc001pby.1_Missense_Mutation_p.L59M	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	276										skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				AAATGTCAGCTTGCTGGAAAA	0.368000												
FAT3	120114	broad.mit.edu	37	11	92088050	92088050	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:92088050T>G	uc001pdj.3	+	1	2789	c.2772T>G	c.(2770-2772)GTT>GTG	p.V924V		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	924	Cadherin 8.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CTCTTAAAGTTTTTTTAGATG	0.443000										TCGA Ovarian(4;0.039)		
PIWIL4	143689	broad.mit.edu	37	11	94308224	94308224	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:94308224A>C	uc001pfa.2	+	3	437	c.226A>C	c.(226-228)AAC>CAC	p.N76H	PIWIL4_uc010rue.1_RNA|PIWIL4_uc009ywk.1_RNA	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	76					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				AGGTGTGAAAAACAAACAGGA	0.343000												
SESN3	143686	broad.mit.edu	37	11	94918633	94918633	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:94918633A>C	uc001pfk.1	-	5	771	c.549T>G	c.(547-549)AAT>AAG	p.N183K	SESN3_uc010rug.1_Missense_Mutation_p.N44K|SESN3_uc001pfl.2_Missense_Mutation_p.N183K	NM_144665	NP_653266	P58005	SESN3_HUMAN	sestrin 3	183					cell cycle arrest	nucleus					0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)		BRCA - Breast invasive adenocarcinoma(274;0.234)		GAGACCAATTATTTTCTCCAG	0.363000												
TRPC6	7225	broad.mit.edu	37	11	101375353	101375353	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:101375353T>G	uc001pgk.3	-	2	772	c.347A>C	c.(346-348)AAG>ACG	p.K116T	TRPC6_uc009ywy.2_Missense_Mutation_p.K116T|TRPC6_uc009ywz.1_Missense_Mutation_p.K116T	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	116	Cytoplasmic (Potential).|ANK 1.				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		TTCTAACATCTTCCGCACCAC	0.468000												
C11orf70	85016	broad.mit.edu	37	11	101953825	101953825	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:101953825T>G	uc001pgp.2	+	7	727	c.699T>G	c.(697-699)CCT>CCG	p.P233P	C11orf70_uc001pgq.2_Silent_p.P195P	NM_032930	NP_116319	Q9BRQ4	CK070_HUMAN	hypothetical protein LOC85016	233										skin(1)	1	all_epithelial(12;0.0137)	Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.0137)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0335)		TGTGCTATCCTTCAGCAAAGA	0.279000												
MMP27	64066	broad.mit.edu	37	11	102573756	102573756	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:102573756T>G	uc001phd.1	-	3	458	c.435A>C	c.(433-435)AAA>AAC	p.K145N		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	145					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		TCTTGGTGAATTTTAGTGGAG	0.403000												
MMP12	4321	broad.mit.edu	37	11	102742578	102742578	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:102742578A>T	uc001phk.2	-	3	500	c.455T>A	c.(454-456)ATT>AAT	p.I152N		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	152					positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	GCCTGTGTTAATCTTGCTGAA	0.413000												
DYNC2H1	79659	broad.mit.edu	37	11	103058252	103058252	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:103058252A>C	uc001pho.2	+	43	7221	c.7077A>C	c.(7075-7077)AAA>AAC	p.K2359N	DYNC2H1_uc001phn.1_Missense_Mutation_p.K2359N|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2359	AAA 3 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TGTACTTAAAAGATATCAACC	0.383000												
CARD17	440068	broad.mit.edu	37	11	104971470	104971470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:104971470C>T	uc001pir.1	-	2	61	c.44G>A	c.(43-45)CGT>CAT	p.R15H	CASP1_uc010rve.1_Intron|CASP1_uc010rvf.1_Intron|CASP1_uc010rvg.1_Intron|CASP1_uc010rvh.1_Intron|CASP1_uc010rvi.1_Intron	NM_001007232	NP_001007233	Q5XLA6	CAR17_HUMAN	caspase recruitment domain family, member 17	15	CARD.				proteolysis|regulation of apoptosis	cytoplasm	cysteine-type endopeptidase activity|cysteine-type endopeptidase inhibitor activity			ovary(1)	1						GCCCACTGAACGGATAAACTG	0.428000												
EXPH5	23086	broad.mit.edu	37	11	108380425	108380425	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:108380425T>C	uc001pkk.2	-	6	5920	c.5809A>G	c.(5809-5811)AGC>GGC	p.S1937G	EXPH5_uc010rvy.1_Missense_Mutation_p.S1749G|EXPH5_uc010rvz.1_Missense_Mutation_p.S1781G|EXPH5_uc010rwa.1_Missense_Mutation_p.S1861G	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1937					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		GAATTTGAGCTTAATGACTCT	0.438000												
DDX10	1662	broad.mit.edu	37	11	108559688	108559688	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:108559688T>G	uc001pkm.2	+	7	939	c.874T>G	c.(874-876)TAC>GAC	p.Y292D	DDX10_uc001pkl.1_Missense_Mutation_p.Y292D	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	292	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		GGAACAGAACTACATAGTCTG	0.373000			T	NUP98	AML*							
LAYN	143903	broad.mit.edu	37	11	111431129	111431129	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:111431129A>C	uc001plr.1	+	8	1431	c.1095A>C	c.(1093-1095)CAA>CAC	p.Q365H	LAYN_uc001plp.1_Missense_Mutation_p.Q357H|LAYN_uc001plq.1_3'UTR|LAYN_uc001pls.1_3'UTR|LAYN_uc010rwg.1_Missense_Mutation_p.Q212H|LAYN_uc010rwh.1_Missense_Mutation_p.Q213H	NM_178834	NP_849156	Q6UX15	LAYN_HUMAN	layilin	365	Cytoplasmic (Potential).|3 X 5 AA repeats of E-S-G-X-V.|Interaction with NF2 (By similarity).|2 X 4 AA repeats of N-X-I-Y.|Interaction with TLN1 (By similarity).					cell surface|integral to membrane|ruffle	hyaluronic acid binding|sugar binding				0		all_cancers(61;9.06e-10)|all_epithelial(67;1.34e-05)|Melanoma(852;1.74e-05)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.086)		Epithelial(105;1.5e-06)|BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|all cancers(92;2.45e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0476)		CCCCAGACCAAATGGGGAGGA	0.408000												
DIXDC1	85458	broad.mit.edu	37	11	111856042	111856042	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:111856042A>C	uc001pml.2	+	9	1302	c.1005A>C	c.(1003-1005)CAA>CAC	p.Q335H	DIXDC1_uc001pmm.2_Missense_Mutation_p.Q124H|DIXDC1_uc001pmn.2_Missense_Mutation_p.Q41H	NM_001037954	NP_001033043	Q155Q3	DIXC1_HUMAN	DIX domain containing 1 isoform a	335	Potential.				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytosol|focal adhesion	actin binding|gamma-tubulin binding|signal transducer activity			ovary(1)	1		all_cancers(61;7.58e-15)|all_epithelial(67;5.42e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;2.99e-07)|BRCA - Breast invasive adenocarcinoma(274;6.72e-07)|all cancers(92;6.25e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0548)		CCGAGGAACAACTGGTGAGCT	0.343000												
FAM55A	120400	broad.mit.edu	37	11	114392898	114392898	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:114392898T>G	uc001ppa.2	-	6	1427	c.1010A>C	c.(1009-1011)AAC>ACC	p.N337T	FAM55A_uc010rxd.1_Missense_Mutation_p.N186T	NM_152315	NP_689528	Q8N323	FA55A_HUMAN	hypothetical protein LOC120400	479						extracellular region					0		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;3.02e-06)|Epithelial(105;0.000144)|all cancers(92;0.00106)		CTCCCTGATGTTTTCTGTCTT	0.413000												
APOA1	335	broad.mit.edu	37	11	116706799	116706799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:116706799G>A	uc001ppu.1	-	4	608	c.529C>T	c.(529-531)CGC>TGC	p.R177C	APOA1_uc001ppv.1_Missense_Mutation_p.R177C	NM_000039	NP_000030	P02647	APOA1_HUMAN	apolipoprotein A-I preproprotein	177	6.|10 X approximate tandem repeats.				Cdc42 protein signal transduction|cholesterol efflux|cholesterol homeostasis|cholesterol import|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|negative regulation of cytokine secretion involved in immune response|negative regulation of interleukin-1 beta secretion|negative regulation of very-low-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|phospholipid efflux|platelet activation|platelet degranulation|positive regulation of cholesterol esterification|positive regulation of hydrolase activity|protein stabilization|reverse cholesterol transport	endocytic vesicle|endoplasmic reticulum lumen|plasma membrane|spherical high-density lipoprotein particle|stored secretory granule|very-low-density lipoprotein particle	apolipoprotein A-I receptor binding|beta-amyloid binding|cholesterol binding|cholesterol transporter activity|enzyme binding|high-density lipoprotein particle receptor binding|identical protein binding|phosphatidylcholine-sterol O-acyltransferase activator activity|phospholipid binding				0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.59e-05)|all cancers(92;0.000162)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		ACATGGGCGCGCGCGCGGTCG	0.716000												
SIDT2	51092	broad.mit.edu	37	11	117060709	117060709	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:117060709C>T	uc001pqh.1	+	16	1502	c.1461C>T	c.(1459-1461)AAC>AAT	p.N487N	SIDT2_uc010rxe.1_Silent_p.N487N|SIDT2_uc001pqg.2_Silent_p.N508N|SIDT2_uc001pqi.1_Silent_p.N484N|SIDT2_uc001pqj.1_5'Flank	NM_001040455	NP_001035545	Q8NBJ9	SIDT2_HUMAN	SID1 transmembrane family, member 2 precursor	487	Extracellular (Potential).					integral to membrane|lysosomal membrane					0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000219)|all cancers(92;0.00144)		GCTACTACAACTTCCTCTGCG	0.622000												
DSCAML1	57453	broad.mit.edu	37	11	117389449	117389449	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:117389449G>A	uc001prh.1	-	7	1424	c.1422C>T	c.(1420-1422)TTC>TTT	p.F474F	DSCAML1_uc001pri.1_Silent_p.F278F	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	414	Extracellular (Potential).|Ig-like C2-type 5.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CCTTCTCGCTGAAGGACGAGA	0.682000												
DSCAML1	57453	broad.mit.edu	37	11	117391952	117391952	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:117391952T>A	uc001prh.1	-	6	1288	c.1286A>T	c.(1285-1287)GAG>GTG	p.E429V	DSCAML1_uc001pri.1_Missense_Mutation_p.E233V	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	369	Extracellular (Potential).|Ig-like C2-type 4.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GAGCAGCGTCTCGTTGCTGAG	0.637000												
TBCEL	219899	broad.mit.edu	37	11	120957516	120957516	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:120957516A>C	uc009zay.2	+	8	1064	c.986A>C	c.(985-987)AAG>ACG	p.K329T	TBCEL_uc001pxo.2_Missense_Mutation_p.K329T|TBCEL_uc001pxp.2_Missense_Mutation_p.K185T|TBCEL_uc001pxq.2_RNA	NM_001130047	NP_001123519	Q5QJ74	TBCEL_HUMAN	tubulin folding cofactor E-like	329						cytoplasm|cytoskeleton				skin(1)	1		Breast(109;0.00526)|Medulloblastoma(222;0.0523)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;5.89e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.121)		AAATATGGGAAGTTGGAGCCT	0.433000												
TECTA	7007	broad.mit.edu	37	11	121039448	121039448	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:121039448A>G	uc010rzo.1	+	19	5813	c.5813A>G	c.(5812-5814)AAA>AGA	p.K1938R		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1938	ZP.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GCTCTCTACAAAAACGCCTCC	0.458000												
OR6T1	219874	broad.mit.edu	37	11	123814347	123814347	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:123814347A>G	uc010sab.1	-	1	199	c.199T>C	c.(199-201)TCC>CCC	p.S67P		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TCCAGGAAGGAGAAATTCCGC	0.493000												
SLC37A2	219855	broad.mit.edu	37	11	124952150	124952150	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:124952150A>G	uc001qbn.2	+	10	1147	c.896A>G	c.(895-897)GAG>GGG	p.E299G	SLC37A2_uc010sau.1_Missense_Mutation_p.E299G|SLC37A2_uc010sav.1_5'Flank|SLC37A2_uc001qbp.2_5'Flank	NM_001145290	NP_001138762	Q8TED4	SPX2_HUMAN	solute carrier family 37 (glycerol-3-phosphate	299					carbohydrate transport|transmembrane transport	integral to membrane				ovary(2)	2	all_hematologic(175;0.215)	Breast(109;0.012)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.152)|all_lung(97;0.159)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0384)		GGCGTGGTCGAGTTCTCTCTG	0.468000												
HYLS1	219844	broad.mit.edu	37	11	125769999	125769999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:125769999C>T	uc009zbv.2	+	4	1270	c.736C>T	c.(736-738)CTT>TTT	p.L246F	HYLS1_uc001qcx.3_Missense_Mutation_p.L246F|PUS3_uc001qcy.2_Intron	NM_145014	NP_659451	Q96M11	HYLS1_HUMAN	hydrolethalus syndrome 1	246						centrosome|nucleus				upper_aerodigestive_tract(1)	1	all_hematologic(175;0.177)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.131)|all_lung(97;0.139)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0446)		AGAGCAGATGCTTTGTCGAGC	0.468000												
ARHGAP32	9743	broad.mit.edu	37	11	128842931	128842931	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:128842931T>C	uc009zcp.2	-	21	3428	c.3428A>G	c.(3427-3429)CAC>CGC	p.H1143R	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Missense_Mutation_p.H102R|ARHGAP32_uc001qez.2_Missense_Mutation_p.H794R	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1143					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						GTCTACTTGGTGATGTTGCTC	0.463000												
BARX2	8538	broad.mit.edu	37	11	129321257	129321257	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:129321257A>C	uc001qfc.3	+	4	850	c.800A>C	c.(799-801)GAG>GCG	p.E267A		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	267											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		CCGCCCCAGGAGTTGCCAATA	0.567000												
TMEM45B	120224	broad.mit.edu	37	11	129727278	129727278	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:129727278T>G	uc001qfe.1	+	5	702	c.641T>G	c.(640-642)TTC>TGC	p.F214C	TMEM45B_uc001qff.1_Missense_Mutation_p.F214C	NM_138788	NP_620143	Q96B21	TM45B_HUMAN	transmembrane protein 45B	214	Helical; (Potential).					integral to membrane					0	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.012)|Lung(977;0.179)|LUSC - Lung squamous cell carcinoma(976;0.189)		AACCTCATGTTCATCACCATG	0.493000												
ZBTB44	29068	broad.mit.edu	37	11	130131610	130131610	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:130131610A>C	uc001qga.2	-	2	553	c.159T>G	c.(157-159)AGT>AGG	p.S53R	ZBTB44_uc001qgb.3_Missense_Mutation_p.S53R|ZBTB44_uc001qfx.2_RNA|ZBTB44_uc001qgc.1_Missense_Mutation_p.S53R|ZBTB44_uc001qfz.2_Missense_Mutation_p.S53R	NM_014155	NP_054874	Q8NCP5	ZBT44_HUMAN	zinc finger and BTB domain containing 44	53	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0192)|Lung(977;0.235)		GAAAGAAATCACTGCAAGCTG	0.428000												
NCAPD3	23310	broad.mit.edu	37	11	134026966	134026966	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:134026966T>C	uc001qhd.1	-	32	4805	c.4199A>G	c.(4198-4200)GAG>GGG	p.E1400G	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA|NCAPD3_uc001qhc.1_Missense_Mutation_p.E350G	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	1400					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		GCCATTCGACTCTTGCTCCAA	0.498000												
KDM5A	5927	broad.mit.edu	37	12	461399	461399	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:461399T>C	uc001qif.1	-	9	1484	c.1121A>G	c.(1120-1122)AAG>AGG	p.K374R	KDM5A_uc001qie.1_Missense_Mutation_p.K374R|KDM5A_uc010sdn.1_Missense_Mutation_p.K333R|KDM5A_uc010sdo.1_Intron	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	374					chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						ATAATCAGACTTAAAATTATC	0.413000			T 	NUP98	AML							
WNK1	65125	broad.mit.edu	37	12	1005569	1005569	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:1005569A>T	uc001qio.3	+	24	6423	c.5916A>T	c.(5914-5916)AAA>AAT	p.K1972N	WNK1_uc001qip.3_Missense_Mutation_p.K1724N|WNK1_uc001qir.3_Missense_Mutation_p.K1145N	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1972					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			ACACAAAGAAAGAAGGACCAG	0.448000												
ADIPOR2	79602	broad.mit.edu	37	12	1893087	1893087	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:1893087T>G	uc001qjm.2	+	7	1077	c.880T>G	c.(880-882)TTG>GTG	p.L294V	ADIPOR2_uc001qjn.2_Missense_Mutation_p.L294V	NM_024551	NP_078827	Q86V24	ADR2_HUMAN	adiponectin receptor 2	294	Helical; Name=5; (Potential).				fatty acid oxidation|hormone-mediated signaling pathway	integral to membrane	hormone binding|receptor activity				0	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000382)			CATTCCTACCTTGCACTATGT	0.507000												
ITFG2	55846	broad.mit.edu	37	12	2930009	2930009	+	Silent	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:2930009T>A	uc001qlb.1	+	6	730	c.666T>A	c.(664-666)CCT>CCA	p.P222P	ITFG2_uc010seb.1_Silent_p.P45P|ITFG2_uc010sec.1_RNA	NM_018463	NP_060933	Q969R8	ITFG2_HUMAN	integrin alpha FG-GAP repeat containing 2	222											0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			GGTCCCCTCCTGCCTCTGAAG	0.582000												
GALNT8	26290	broad.mit.edu	37	12	4874640	4874640	+	Silent	SNP	G	G	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:4874640G>C	uc001qne.1	+	10	1781	c.1689G>C	c.(1687-1689)GCG>GCC	p.A563A		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	563	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						CTGGCAAGGCGGAGAAGCCCA	0.463000												
VWF	7450	broad.mit.edu	37	12	6103171	6103171	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:6103171T>A	uc001qnn.1	-	37	6705	c.6455A>T	c.(6454-6456)AAG>ATG	p.K2152M	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2152	VWFD 4.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	AGCCAGGACCTTGTGGCATTC	0.597000												
VWF	7450	broad.mit.edu	37	12	6125799	6125799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:6125799C>T	uc001qnn.1	-	30	5444	c.5194G>A	c.(5194-5196)GTG>ATG	p.V1732M	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1732	VWFA 3; main binding site for collagens type I and III.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TACTGCAGCACTGACACCTGA	0.527000												
VWF	7450	broad.mit.edu	37	12	6128379	6128379	+	Missense_Mutation	SNP	T	T	C	rs63749069		TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:6128379T>C	uc001qnn.1	-	28	4455	c.4205A>G	c.(4204-4206)CAG>CGG	p.Q1402R	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1402	VWFA 1; binding site for platelet glycoprotein Ib.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CTTCAGGCCCTGGACGTAGCG	0.607000												
CD163L1	283316	broad.mit.edu	37	12	7531781	7531781	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:7531781T>G	uc001qsy.2	-	9	2190	c.2164A>C	c.(2164-2166)AAC>CAC	p.N722H	CD163L1_uc010sge.1_Missense_Mutation_p.N732H	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	722	SRCR 7.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TCAGCAATGTTCATTCCCCAG	0.493000												
CLEC4C	170482	broad.mit.edu	37	12	7894101	7894101	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:7894101T>G	uc001qtg.1	-	3	325	c.151A>C	c.(151-153)ACT>CCT	p.T51P	CLEC4C_uc001qth.1_Missense_Mutation_p.T51P|CLEC4C_uc001qti.1_Missense_Mutation_p.T20P	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	51	Extracellular (Potential).				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		CTCTTGACAGTTTTGCTATAC	0.403000												
PZP	5858	broad.mit.edu	37	12	9318719	9318719	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:9318719A>C	uc001qvl.2	-	18	2216	c.2187T>G	c.(2185-2187)AGT>AGG	p.S729R	PZP_uc009zgl.2_Missense_Mutation_p.S598R|PZP_uc010sgo.1_RNA|PZP_uc009zgm.1_Missense_Mutation_p.S61R	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						CTGGCCCTGAACTTTGTTCAT	0.413000												
TAS2R50	259296	broad.mit.edu	37	12	11139032	11139032	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:11139032T>C	uc001qzl.2	-	1	480	c.428A>G	c.(427-429)CAT>CGT	p.H143R	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176890	NP_795371	P59544	T2R50_HUMAN	taste receptor, type 2, member 50	143	Helical; Name=4; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(2)	2						CACAAGAAGATGACAAACCAA	0.373000												
DUSP16	80824	broad.mit.edu	37	12	12640054	12640054	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:12640054A>C	uc001rao.1	-	5	1231	c.599T>G	c.(598-600)TTT>TGT	p.F200C	DUSP16_uc001ran.1_Missense_Mutation_p.F52C	NM_030640	NP_085143	Q9BY84	DUS16_HUMAN	dual specificity phosphatase 16	200					inactivation of MAPK activity|MAPK export from nucleus|MAPK phosphatase export from nucleus, leptomycin B sensitive	cytoplasmic membrane-bounded vesicle|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		Prostate(47;0.0687)		BRCA - Breast invasive adenocarcinoma(232;0.0203)		CTCGGGGATAAAGTCAGGCTT	0.433000												
GPR19	2842	broad.mit.edu	37	12	12814254	12814254	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:12814254T>G	uc001rar.3	-	2	1322	c.1129A>C	c.(1129-1131)ATC>CTC	p.I377L	GPR19_uc001raq.2_Missense_Mutation_p.I377L	NM_006143	NP_006134	Q15760	GPR19_HUMAN	G protein-coupled receptor 19	377	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(47;0.0802)		BRCA - Breast invasive adenocarcinoma(232;0.048)		ATGGAAGGGATTTCTGAAATG	0.398000												
GPR19	2842	broad.mit.edu	37	12	12814276	12814276	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:12814276T>G	uc001rar.3	-	2	1300	c.1107A>C	c.(1105-1107)AAA>AAC	p.K369N	GPR19_uc001raq.2_Missense_Mutation_p.K369N	NM_006143	NP_006134	Q15760	GPR19_HUMAN	G protein-coupled receptor 19	369	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(47;0.0802)		BRCA - Breast invasive adenocarcinoma(232;0.048)		CAACGTAGTTTTTTTTGGCCA	0.393000												
ATF7IP	55729	broad.mit.edu	37	12	14649259	14649259	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:14649259A>C	uc001rbw.2	+	14	3533	c.3375A>C	c.(3373-3375)CGA>CGC	p.R1125R	ATF7IP_uc001rbx.2_Silent_p.R1124R|ATF7IP_uc001rby.3_Silent_p.R1125R|ATF7IP_uc001rca.2_Silent_p.R1125R	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	1125					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						TGCATCACCGACCACCACAAG	0.388000												
PLBD1	79887	broad.mit.edu	37	12	14706297	14706297	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:14706297T>G	uc001rcc.1	-	2	326	c.165A>C	c.(163-165)CAA>CAC	p.Q55H		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	55					lipid catabolic process	extracellular region	hydrolase activity				0						CATTTTTGACTTGTACTGTCT	0.433000												
STRAP	11171	broad.mit.edu	37	12	16055855	16055855	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:16055855A>C	uc001rdc.3	+	10	1350	c.996A>C	c.(994-996)GAA>GAC	p.E332D	STRAP_uc010shw.1_Missense_Mutation_p.E345D|STRAP_uc001rdd.3_Missense_Mutation_p.E238D	NM_007178	NP_009109	Q9Y3F4	STRAP_HUMAN	serine/threonine kinase receptor associated	332				E -> A (in Ref. 6; AAV38848).	mRNA processing|RNA splicing	cell junction|mitochondrion|spliceosomal complex	identical protein binding			skin(1)	1		Hepatocellular(102;0.121)				TTATAGAAGAAATTGCTTCAG	0.308000												
PLEKHA5	54477	broad.mit.edu	37	12	19501386	19501386	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:19501386A>C	uc001reb.2	+	19	2540	c.2454A>C	c.(2452-2454)GAA>GAC	p.E818D	PLEKHA5_uc010sie.1_Missense_Mutation_p.E979D|PLEKHA5_uc001rea.2_Missense_Mutation_p.E876D|PLEKHA5_uc009zin.2_Missense_Mutation_p.E576D|PLEKHA5_uc010sif.1_Missense_Mutation_p.E807D|PLEKHA5_uc010sig.1_Missense_Mutation_p.E800D|PLEKHA5_uc010sih.1_Missense_Mutation_p.E773D|PLEKHA5_uc001rec.1_Missense_Mutation_p.E627D|PLEKHA5_uc009zio.2_Intron	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A	818							1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					CAGTGGCAGAAGTTGATGAAT	0.353000												
RECQL	5965	broad.mit.edu	37	12	21628511	21628511	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:21628511C>T	uc001rex.2	-	11	1455	c.1107G>A	c.(1105-1107)GTG>GTA	p.V369V	RECQL_uc001rey.2_Silent_p.V369V	NM_032941	NP_116559	P46063	RECQ1_HUMAN	RecQ protein-like	369	Helicase C-terminal.				DNA recombination|DNA repair|DNA replication	nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|DNA strand annealing activity|protein binding			ovary(1)|lung(1)	2						CAACAGTTGCCACTACTACCT	0.308000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function				
ITPR2	3709	broad.mit.edu	37	12	26640027	26640027	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:26640027A>G	uc001rhg.2	-	40	5945	c.5528T>C	c.(5527-5529)TTG>TCG	p.L1843S	ITPR2_uc009zjg.1_5'UTR	NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1843	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					AGATGTCATCAATTCATTGTC	0.368000												
FGD4	121512	broad.mit.edu	37	12	32778593	32778593	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:32778593T>C	uc001rkz.2	+	14	2118	c.1641T>C	c.(1639-1641)GCT>GCC	p.A547A	FGD4_uc001rlc.2_Silent_p.A632A|FGD4_uc001rky.2_Silent_p.A299A|FGD4_uc001rla.2_Silent_p.A203A|FGD4_uc010ske.1_Silent_p.A659A|FGD4_uc001rlb.1_RNA	NM_139241	NP_640334	Q96M96	FGD4_HUMAN	FYVE, RhoGEF and PH domain containing 4	547					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|filopodium|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)					TTTAGACTGCTGAGCTAGGGA	0.338000												
FGD4	121512	broad.mit.edu	37	12	32778598	32778598	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:32778598T>C	uc001rkz.2	+	14	2123	c.1646T>C	c.(1645-1647)CTA>CCA	p.L549P	FGD4_uc001rlc.2_Missense_Mutation_p.L634P|FGD4_uc001rky.2_Missense_Mutation_p.L301P|FGD4_uc001rla.2_Missense_Mutation_p.L205P|FGD4_uc010ske.1_Missense_Mutation_p.L661P|FGD4_uc001rlb.1_RNA	NM_139241	NP_640334	Q96M96	FGD4_HUMAN	FYVE, RhoGEF and PH domain containing 4	549					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|filopodium|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)					ACTGCTGAGCTAGGGAAAAGA	0.333000												
CNTN1	1272	broad.mit.edu	37	12	41327555	41327555	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:41327555A>C	uc001rmm.1	+	9	973	c.860A>C	c.(859-861)GAG>GCG	p.E287A	CNTN1_uc009zjy.1_Missense_Mutation_p.E287A|CNTN1_uc001rmn.1_Missense_Mutation_p.E276A|CNTN1_uc001rmo.2_Missense_Mutation_p.E287A	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	287	Ig-like C2-type 3.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				AGCACTGCTGAGATTAGCACC	0.408000												
CNTN1	1272	broad.mit.edu	37	12	41421690	41421690	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:41421690A>C	uc001rmm.1	+	22	2855	c.2742A>C	c.(2740-2742)TCA>TCC	p.S914S	CNTN1_uc001rmn.1_Silent_p.S903S	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	914	Fibronectin type-III 4.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				TCATCAGTTCAGTAAGGTCTG	0.398000												
TWF1	5756	broad.mit.edu	37	12	44191514	44191514	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:44191514C>T	uc001rob.2	-	7	757	c.729G>A	c.(727-729)CAG>CAA	p.Q243Q	TWF1_uc001rnz.2_Silent_p.Q104Q|TWF1_uc001roa.2_Silent_p.Q236Q|TWF1_uc001roc.2_Silent_p.Q104Q	NM_002822	NP_002813	Q12792	TWF1_HUMAN	twinfilin 1	202	ADF-H 2.					actin cytoskeleton|cytoplasm	actin binding|protein tyrosine kinase activity			stomach(1)	1	all_cancers(12;0.00125)	Lung NSC(34;0.0804)|all_lung(34;0.181)		GBM - Glioblastoma multiforme(48;0.0474)		CTCTTACCAACTGCACATAGT	0.333000												
HDAC7	51564	broad.mit.edu	37	12	48183070	48183070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:48183070C>T	uc010slo.1	-	19	2404	c.2209G>A	c.(2209-2211)GCC>ACC	p.A737T	HDAC7_uc009zku.2_RNA|HDAC7_uc001rqe.2_Missense_Mutation_p.A171T|HDAC7_uc001rqj.3_Missense_Mutation_p.A700T|HDAC7_uc001rqk.3_Missense_Mutation_p.A720T|HDAC7_uc010slp.1_5'Flank	NM_015401	NP_056216	Q8WUI4	HDAC7_HUMAN	histone deacetylase 7 isoform a	698	Histone deacetylase.				negative regulation of interleukin-2 production|negative regulation of osteoblast differentiation|positive regulation of cell migration involved in sprouting angiogenesis|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.137)		ATCTTGCTGGCCTTGCTCTGC	0.582000												
OR10AD1	121275	broad.mit.edu	37	12	48596600	48596600	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:48596600A>C	uc001rrl.1	-	1	476	c.476T>G	c.(475-477)TTT>TGT	p.F159C		NM_001004134	NP_001004134	Q8NGE0	O10AD_HUMAN	olfactory receptor, family 10, subfamily AD,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATACTCGAGAAAGATGCCATT	0.502000												
OR10AD1	121275	broad.mit.edu	37	12	48597066	48597066	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:48597066T>C	uc001rrl.1	-	1	10	c.10A>G	c.(10-12)AAT>GAT	p.N4D		NM_001004134	NP_001004134	Q8NGE0	O10AD_HUMAN	olfactory receptor, family 10, subfamily AD,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATGCTGCCATTCCTTAGCATC	0.522000												
MLL2	8085	broad.mit.edu	37	12	49444192	49444192	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:49444192T>G	uc001rta.3	-	11	3179	c.3179A>C	c.(3178-3180)AAG>ACG	p.K1060T		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1060	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CCCCACTACCTTCCCTATGGG	0.577000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)		
FMNL3	91010	broad.mit.edu	37	12	50050607	50050607	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:50050607T>G	uc001ruv.1	-	8	1024	c.790A>C	c.(790-792)AGG>CGG	p.R264R	FMNL3_uc001ruw.1_Silent_p.R213R|FMNL3_uc001ruu.1_Silent_p.R114R	NM_175736	NP_783863	Q8IVF7	FMNL3_HUMAN	formin-like 3 isoform 1	264	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			breast(2)|pancreas(2)	4						GGAACTCACCTTGGATTCTTG	0.522000												
RACGAP1	29127	broad.mit.edu	37	12	50388012	50388012	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:50388012T>C	uc001rvt.2	-	14	1551	c.1241A>G	c.(1240-1242)GAT>GGT	p.D414G	RACGAP1_uc009zlm.1_Missense_Mutation_p.D414G|RACGAP1_uc001rvs.2_Missense_Mutation_p.D414G|RACGAP1_uc001rvu.2_Missense_Mutation_p.D414G	NM_013277	NP_037409	Q9H0H5	RGAP1_HUMAN	Rac GTPase activating protein 1	414	Rho-GAP.				blood coagulation|cytokinesis, actomyosin contractile ring assembly|cytokinesis, initiation of separation|embryo development|microtubule-based movement|neuroblast proliferation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|spermatogenesis|sulfate transport	acrosomal vesicle|cytosol|microtubule|midbody|nucleus|spindle	alpha-tubulin binding|beta-tubulin binding|gamma-tubulin binding|GTPase activator activity|metal ion binding			kidney(1)	1						AGCATGGATATCATCCACTTT	0.453000												
KRT6A	3853	broad.mit.edu	37	12	52884661	52884661	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:52884661A>G	uc001sam.2	-	4	1102	c.893T>C	c.(892-894)CTG>CCG	p.L298P		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	298	Coil 1B.|Rod.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		CAAGGCTCTCAGGAAGTTGAT	0.493000												
AAAS	8086	broad.mit.edu	37	12	53702131	53702131	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:53702131A>G	uc001scr.3	-	13	1347	c.1184T>C	c.(1183-1185)CTT>CCT	p.L395P	AAAS_uc001scs.3_Missense_Mutation_p.L362P	NM_015665	NP_056480	Q9NRG9	AAAS_HUMAN	achalasia, adrenocortical insufficiency,	395					carbohydrate metabolic process|glucose transport|nucleocytoplasmic transport|regulation of glucose transport|regulation of nucleocytoplasmic transport|transmembrane transport|viral reproduction	nuclear pore				ovary(1)	1						CTCTCCCCCAAGCCTGTGGGT	0.582000												
HOXC11	3227	broad.mit.edu	37	12	54369034	54369034	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:54369034T>C	uc001sem.2	+	2	868	c.752T>C	c.(751-753)TTT>TCT	p.F251S		NM_014212	NP_055027	O43248	HXC11_HUMAN	homeobox C11	251	Homeobox.				endoderm development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GAGCGAGAGTTTTTCTTCAAC	0.552000			T	NUP98	AML							
NCKAP1L	3071	broad.mit.edu	37	12	54902229	54902229	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:54902229A>C	uc001sgc.3	+	5	499	c.420A>C	c.(418-420)TCA>TCC	p.S140S	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Silent_p.S90S	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	140					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CTTACACCTCAGTCATTTTAC	0.443000												
PDE1B	5153	broad.mit.edu	37	12	54970356	54970356	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:54970356T>G	uc001sgd.1	+	14	1544	c.1378T>G	c.(1378-1380)TTT>GTT	p.F460V	PDE1B_uc010soz.1_Missense_Mutation_p.F323V|PDE1B_uc010spa.1_Missense_Mutation_p.F419V|PDE1B_uc001sgf.2_Missense_Mutation_p.F323V|PDE1B_uc001sge.2_Missense_Mutation_p.F440V|PDE1B_uc009znq.2_Missense_Mutation_p.F256V	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	460	Catalytic (By similarity).				activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						TGCTTCTAGCTTTCAGTGGCG	0.572000												
OR9K2	441639	broad.mit.edu	37	12	55524397	55524397	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:55524397T>G	uc010spe.1	+	1	845	c.845T>G	c.(844-846)TTT>TGT	p.F282C		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	282	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						GCTGTCTTTTTTATGTATCTC	0.443000												
OR10A7	121364	broad.mit.edu	37	12	55615481	55615481	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:55615481A>C	uc010spf.1	+	1	673	c.673A>C	c.(673-675)ATT>CTT	p.I225L		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						TATCATAACAATTCTGAGGAT	0.463000												
OR6C68	403284	broad.mit.edu	37	12	55886425	55886425	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:55886425A>C	uc010spo.1	+	1	279	c.279A>C	c.(277-279)AAA>AAC	p.K93N		NM_001005519	NP_001005519	A6NDL8	O6C68_HUMAN	olfactory receptor, family 6, subfamily C,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTGGGAACAAAATAATAACGT	0.338000												
PPM1H	57460	broad.mit.edu	37	12	63113967	63113967	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:63113967A>G	uc001srk.3	-	6	1206	c.1057T>C	c.(1057-1059)TTT>CTT	p.F353L		NM_020700	NP_065751	Q9ULR3	PPM1H_HUMAN	protein phosphatase 1H (PP2C domain containing)	353	PP2C-like.						phosphoprotein phosphatase activity			lung(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;0.000443)|BRCA - Breast invasive adenocarcinoma(9;0.209)	GBM - Glioblastoma multiforme(28;0.0126)		GTCATATTAAAGTCCCTGTAG	0.463000												
RAB21	23011	broad.mit.edu	37	12	72167766	72167766	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:72167766A>G	uc001swt.2	+	4	607	c.355A>G	c.(355-357)AAA>GAA	p.K119E		NM_014999	NP_055814	Q9UL25	RAB21_HUMAN	RAB21, member RAS oncogene family	119					protein transport|small GTPase mediated signal transduction	cleavage furrow|cytoplasmic vesicle membrane|early endosome membrane|endoplasmic reticulum membrane|Golgi membrane	GDP binding|GTP binding|GTPase activity|protein binding				0						AGAATTACGGAAAATGTTGGG	0.299000												
KCNC2	3747	broad.mit.edu	37	12	75601557	75601557	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:75601557C>T	uc001sxg.1	-	2	751	c.207G>A	c.(205-207)CCG>CCA	p.P69P	KCNC2_uc009zry.2_Silent_p.P69P|KCNC2_uc001sxe.2_Silent_p.P69P|KCNC2_uc001sxf.2_Silent_p.P69P|KCNC2_uc010stw.1_Silent_p.P69P	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	69	Gly/Pro-rich (insert).|Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						CGggggacagcgggggcgctc	0.527000												
LIN7A	8825	broad.mit.edu	37	12	81283052	81283052	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:81283052T>G	uc001szj.1	-	2	372	c.179A>C	c.(178-180)GAG>GCG	p.E60A	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	60	L27.				exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						TGTACAAAACTCACTCTGAAG	0.368000												
EEA1	8411	broad.mit.edu	37	12	93226309	93226309	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:93226309T>G	uc001tck.2	-	11	1498	c.1233A>C	c.(1231-1233)CAA>CAC	p.Q411H		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	411	Gln/Glu/Lys-rich.|Potential.				early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						CACTTTGGAGTTGTAACCCAT	0.363000												
PLXNC1	10154	broad.mit.edu	37	12	94692436	94692436	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:94692436T>G	uc001tdc.2	+	27	4352	c.4103T>G	c.(4102-4104)CTT>CGT	p.L1368R	PLXNC1_uc010sut.1_Missense_Mutation_p.L415R|PLXNC1_uc009zsv.2_Missense_Mutation_p.L107R	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1368	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						CTTGAAAAACTTTTTAGAAGC	0.348000												
APAF1	317	broad.mit.edu	37	12	99042569	99042569	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:99042569T>G	uc001tfz.2	+	3	881	c.304T>G	c.(304-306)TCA>GCA	p.S102A	APAF1_uc001tfy.2_Intron|APAF1_uc001tga.2_Intron|APAF1_uc001tgb.2_Missense_Mutation_p.S102A|APAF1_uc001tgc.2_Missense_Mutation_p.S102A	NM_181861	NP_863651	O14727	APAF_HUMAN	apoptotic peptidase activating factor 1 isoform	102					activation of caspase activity by cytochrome c|defense response|induction of apoptosis by intracellular signals|nervous system development	cytosol|Golgi apparatus|nucleus	ATP binding|caspase activator activity|protein binding			ovary(2)|lung(1)	3					Adenosine triphosphate(DB00171)	TGGTAAAGATTCAGTTAGTGG	0.363000												
ARL1	400	broad.mit.edu	37	12	101790343	101790343	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:101790343T>C	uc001tib.2	-	5	498	c.349A>G	c.(349-351)AGA>GGA	p.R117G	ARL1_uc010svn.1_Missense_Mutation_p.R71G|ARL1_uc010svo.1_Intron|ARL1_uc001tic.2_Missense_Mutation_p.R117G	NM_001177	NP_001168	P40616	ARL1_HUMAN	ADP-ribosylation factor-like 1	117					small GTPase mediated signal transduction	Golgi membrane	enzyme activator activity|GTP binding|GTPase activity|metal ion binding|protein binding			central_nervous_system(1)	1		Lung NSC(355;2.1e-05)|Breast(359;0.00015)|Myeloproliferative disorder(1001;0.163)		GBM - Glioblastoma multiforme(134;1.67e-09)|BRCA - Breast invasive adenocarcinoma(302;0.0125)		ATGGCTTTTCTCAGCTCTTCT	0.353000												
GNPTAB	79158	broad.mit.edu	37	12	102174027	102174027	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:102174027T>C	uc001tit.2	-	7	853	c.674A>G	c.(673-675)CAA>CGA	p.Q225R	GNPTAB_uc001tiu.1_Missense_Mutation_p.Q225R|GNPTAB_uc001tiv.3_Missense_Mutation_p.Q88R	NM_024312	NP_077288	Q3T906	GNPTA_HUMAN	N-acetylglucosamine-1-phosphate transferase	225					cell differentiation	Golgi membrane|integral to membrane|nucleus	metal ion binding|transcription factor binding|UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity			ovary(1)|skin(1)	2						AGCCAAATCTTGCATTAGCAC	0.368000												
C12orf48	55010	broad.mit.edu	37	12	102572378	102572378	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:102572378T>C	uc001tjf.2	+	8	1126	c.1014T>C	c.(1012-1014)TCT>TCC	p.S338S	C12orf48_uc001tjg.2_Silent_p.S257S|C12orf48_uc010swa.1_Silent_p.S415S|C12orf48_uc001tjh.2_Silent_p.S257S|C12orf48_uc010swb.1_Intron|C12orf48_uc009zuc.2_Intron|C12orf48_uc001tjj.2_Silent_p.S53S|C12orf48_uc001tjk.2_Intron|C12orf48_uc009zud.2_Intron	NM_017915	NP_060385	Q9NWS1	PR1BP_HUMAN	hypothetical protein LOC55010	338					response to DNA damage stimulus	cytoplasm|nucleus	DNA binding				0						AGCCAAAATCTCATGCCATAA	0.403000												
ASCL1	429	broad.mit.edu	37	12	103352261	103352261	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:103352261A>G	uc001tjr.3	+	1	810	c.239A>G	c.(238-240)AAG>AGG	p.K80R		NM_004316	NP_004307	P50553	ASCL1_HUMAN	achaete-scute complex homolog 1	80					cerebral cortex GABAergic interneuron differentiation|negative regulation of apoptosis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|noradrenergic neuron fate commitment|Notch signaling pathway|positive regulation of neuron differentiation|positive regulation of transcription from RNA polymerase II promoter|response to retinoic acid|sympathetic nervous system development	nucleus	bHLH transcription factor binding|E-box binding|sequence-specific DNA binding transcription factor activity|transcription factor binding transcription factor activity				0						GGCGGTCACAAGTCAGCGCCC	0.517000												
ACACB	32	broad.mit.edu	37	12	109577503	109577503	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:109577503A>G	uc001tob.2	+	2	412	c.293A>G	c.(292-294)AAG>AGG	p.K98R	ACACB_uc001toc.2_Missense_Mutation_p.K98R	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	98					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	TCCCACCAGAAGCCCCCAAGA	0.617000												
ACACB	32	broad.mit.edu	37	12	109644623	109644623	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:109644623A>T	uc001tob.2	+	20	3141	c.3022A>T	c.(3022-3024)AGT>TGT	p.S1008C	ACACB_uc001toc.2_Missense_Mutation_p.S1008C	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1008					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	CAACGTCATGAGTGGCTTTTG	0.547000												
UBE3B	89910	broad.mit.edu	37	12	109959331	109959331	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:109959331A>C	uc001top.2	+	21	2942	c.2339A>C	c.(2338-2340)AAG>ACG	p.K780T	UBE3B_uc001toq.2_Missense_Mutation_p.K780T|UBE3B_uc001tos.2_Missense_Mutation_p.K207T|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Missense_Mutation_p.K780T	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	780	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						TTTGTGGGGAAGATGCTGGGG	0.458000												
MVK	4598	broad.mit.edu	37	12	110028611	110028611	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:110028611A>C	uc001toy.3	+	8	897	c.713A>C	c.(712-714)AAA>ACA	p.K238T	MVK_uc009zvk.2_Missense_Mutation_p.K238T|MVK_uc010sxr.1_Missense_Mutation_p.K186T|MVK_uc001toz.3_Missense_Mutation_p.K44T|MVK_uc001tpc.3_Intron	NM_001114185	NP_001107657	Q03426	KIME_HUMAN	mevalonate kinase	238					cholesterol biosynthetic process|isoprenoid biosynthetic process	cytosol|peroxisome	ATP binding|identical protein binding|mevalonate kinase activity				0						ACCAACACCAAAGTCCCTCGC	0.587000												
C12orf49	79794	broad.mit.edu	37	12	117160952	117160952	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:117160952A>C	uc001tvz.1	-	2	326	c.188T>G	c.(187-189)TTT>TGT	p.F63C	C12orf49_uc009zwm.1_Intron	NM_024738	NP_079014	Q9H741	CL049_HUMAN	hypothetical protein LOC79794 precursor	63						extracellular region				ovary(1)	1	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0281)		GCCCAAGTTAAACTGCACTTT	0.517000												
NOS1	4842	broad.mit.edu	37	12	117696841	117696841	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:117696841T>C	uc001twm.1	-	15	3148	c.2462A>G	c.(2461-2463)GAG>GGG	p.E821G	NOS1_uc001twn.1_5'Flank	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	821	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CTCCCCATTCTCAGGGGGATC	0.488000												
WSB2	55884	broad.mit.edu	37	12	118476183	118476183	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:118476183A>C	uc001twr.2	-	5	668	c.570T>G	c.(568-570)ATT>ATG	p.I190M	WSB2_uc010sza.1_Intron|WSB2_uc010szb.1_Translation_Start_Site|WSB2_uc009zws.1_Missense_Mutation_p.I190M	NM_018639	NP_061109	Q9NYS7	WSB2_HUMAN	WD SOCS-box protein 2	190	WD 2.				intracellular signal transduction					ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ATAACACTTGAATCTGTTTAC	0.537000												
CIT	11113	broad.mit.edu	37	12	120214531	120214531	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:120214531A>C	uc001txi.1	-	14	1834	c.1781T>G	c.(1780-1782)CTT>CGT	p.L594R	CIT_uc001txh.1_Missense_Mutation_p.L128R|CIT_uc001txj.1_Missense_Mutation_p.L594R	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	594	Potential.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		TTCAGCAGCAAGCCGAGACTC	0.463000												
GCN1L1	10985	broad.mit.edu	37	12	120602204	120602204	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:120602204A>C	uc001txo.2	-	18	1797	c.1784T>G	c.(1783-1785)CTT>CGT	p.L595R		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	595					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AAAGCCCCCAAGAGAGGACAG	0.622000												
RSRC2	65117	broad.mit.edu	37	12	122990116	122990116	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:122990116A>G	uc001ucr.2	-	10	1409	c.1263T>C	c.(1261-1263)GGT>GGC	p.G421G	RSRC2_uc001uco.2_Silent_p.G190G|RSRC2_uc001ucp.2_Silent_p.G362G|RSRC2_uc001ucq.2_Silent_p.G189G|RSRC2_uc001ucs.2_Silent_p.G190G|RSRC2_uc001uct.2_Silent_p.G373G|RSRC2_uc001ucu.2_Silent_p.G422G	NM_023012	NP_075388	Q7L4I2	RSRC2_HUMAN	arginine/serine-rich coiled-coil 2 isoform a	421										ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.14e-05)|Epithelial(86;0.000183)|BRCA - Breast invasive adenocarcinoma(302;0.201)		TGAAACCCAAACCCATTCCTC	0.398000												
DNAH10	196385	broad.mit.edu	37	12	124359938	124359938	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr12:124359938A>G	uc001uft.3	+	46	7770	c.7745A>G	c.(7744-7746)GAC>GGC	p.D2582G		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2582	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AATGAAGTTGACCCAAGATTT	0.453000												
CRYL1	51084	broad.mit.edu	37	13	20978777	20978777	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:20978777G>A	uc001une.2	-	7	922	c.843C>T	c.(841-843)AAC>AAT	p.N281N	CRYL1_uc001unf.2_Silent_p.N259N|CRYL1_uc001ung.2_Silent_p.N259N	NM_015974	NP_057058	Q9Y2S2	CRYL1_HUMAN	lambda-crystallin	281					fatty acid metabolic process	cytosol	3-hydroxyacyl-CoA dehydrogenase activity|L-gulonate 3-dehydrogenase activity|NAD+ binding|protein homodimerization activity				0		all_cancers(29;2.27e-23)|all_epithelial(30;1.69e-19)|all_lung(29;8.29e-18)|Lung SC(185;0.0262)|Ovarian(182;0.0827)|Hepatocellular(188;0.244)		all cancers(112;6.6e-05)|Epithelial(112;0.00178)|OV - Ovarian serous cystadenocarcinoma(117;0.0169)|Lung(94;0.0215)|GBM - Glioblastoma multiforme(144;0.0402)|LUSC - Lung squamous cell carcinoma(192;0.061)		TACATACCTGGTTAACCTTCT	0.522000												
XPO4	64328	broad.mit.edu	37	13	21383284	21383284	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:21383284T>G	uc001unq.3	-	11	1467	c.1431A>C	c.(1429-1431)CAA>CAC	p.Q477H		NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	477					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		CACTGGCCAGTTGATCAGAAA	0.433000												
SACS	26278	broad.mit.edu	37	13	23907309	23907309	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:23907309A>C	uc001uon.2	-	10	11295	c.10706T>G	c.(10705-10707)CTT>CGT	p.L3569R	SACS_uc001uoo.2_Missense_Mutation_p.L3422R|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3569					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		GGGTTTTATAAGTTGTTCCAA	0.308000												
SACS	26278	broad.mit.edu	37	13	23909096	23909096	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:23909096A>C	uc001uon.2	-	10	9508	c.8919T>G	c.(8917-8919)GAT>GAG	p.D2973E	SACS_uc001uoo.2_Missense_Mutation_p.D2826E|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2973					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		GACAATATAAATCTGGCTGTA	0.383000												
SACS	26278	broad.mit.edu	37	13	23910752	23910752	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:23910752A>C	uc001uon.2	-	10	7852	c.7263T>G	c.(7261-7263)TTT>TTG	p.F2421L	SACS_uc001uoo.2_Missense_Mutation_p.F2274L|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2421					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		GGCAAAGCTGAAAATTCTCTT	0.368000												
MTUS2	23281	broad.mit.edu	37	13	29600662	29600662	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:29600662T>C	uc001usl.3	+	1	1915	c.1857T>C	c.(1855-1857)CCT>CCC	p.P619P		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	609						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						AGGACACACCTTCCTCGCAGG	0.517000												
FAM48A	55578	broad.mit.edu	37	13	37607715	37607715	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:37607715A>C	uc001uwg.2	-	10	826	c.578T>G	c.(577-579)CTT>CGT	p.L193R	FAM48A_uc010abt.2_Missense_Mutation_p.L194R|FAM48A_uc001uwh.2_Missense_Mutation_p.L194R|FAM48A_uc001uwi.2_Missense_Mutation_p.L193R|FAM48A_uc001uwj.2_Missense_Mutation_p.L194R|FAM48A_uc001uwk.2_Missense_Mutation_p.L193R|FAM48A_uc010tes.1_Missense_Mutation_p.L181R|FAM48A_uc001uwl.1_Missense_Mutation_p.L193R	NM_001014286	NP_001014308	Q8NEM7	FA48A_HUMAN	family with sequence similarity 48, member A	193					autophagy|gastrulation	SAGA-type complex	protein binding				0		Lung NSC(96;2.09e-06)|Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.0959)		all cancers(112;6.06e-07)|Epithelial(112;1.87e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00794)|BRCA - Breast invasive adenocarcinoma(63;0.0128)|GBM - Glioblastoma multiforme(144;0.0477)		CTCAAGCAAAAGTTTGTCTTC	0.383000												
FREM2	341640	broad.mit.edu	37	13	39265757	39265757	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:39265757A>C	uc001uwv.2	+	1	4585	c.4276A>C	c.(4276-4278)AGT>CGT	p.S1426R		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1426	Extracellular (Potential).|CSPG 10.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TGATGTGATAAGTAAGGGAGT	0.398000												
KIAA0564	23078	broad.mit.edu	37	13	42144716	42144716	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:42144716T>G	uc001uyj.2	-	44	5567	c.5497A>C	c.(5497-5499)AAT>CAT	p.N1833H		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1833	VWFA.					extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		CGTGACAGATTTGCATCACTC	0.413000												
FNDC3A	22862	broad.mit.edu	37	13	49748662	49748662	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:49748662T>G	uc001vcm.2	+	12	1627	c.1322T>G	c.(1321-1323)TTC>TGC	p.F441C	FNDC3A_uc001vcn.2_Missense_Mutation_p.F441C|FNDC3A_uc001vco.2_RNA|FNDC3A_uc001vcp.1_Missense_Mutation_p.F367C|FNDC3A_uc001vcq.2_Missense_Mutation_p.F385C	NM_001079673	NP_001073141	Q9Y2H6	FND3A_HUMAN	fibronectin type III domain containing 3A	441	Fibronectin type-III 2.					Golgi membrane|integral to membrane				lung(2)	2		all_lung(13;7.44e-08)|Lung NSC(96;4.08e-06)|Breast(56;0.000111)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.94e-09)		GGCTGTAAATTCAGACTATCG	0.323000												
PCDH8	5100	broad.mit.edu	37	13	53421176	53421176	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:53421176T>C	uc001vhi.2	-	1	1599	c.1396A>G	c.(1396-1398)ACG>GCG	p.T466A	PCDH8_uc001vhj.2_Missense_Mutation_p.T466A	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	466	Extracellular (Potential).|Cadherin 4.				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		GCCACCAGCGTCAAGTTGTAC	0.711000												
DIAPH3	81624	broad.mit.edu	37	13	60544997	60544997	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:60544997T>G	uc001vht.2	-	16	2167	c.1948A>C	c.(1948-1950)AAT>CAT	p.N650H	DIAPH3_uc001vhu.2_Missense_Mutation_p.N387H|DIAPH3_uc001vhv.2_Missense_Mutation_p.N228H	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	650	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		TTTAACCAATTCAATCTTCTC	0.299000												
PCDH9	5101	broad.mit.edu	37	13	67801672	67801672	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:67801672T>C	uc001vik.2	-	2	1593	c.901A>G	c.(901-903)AGA>GGA	p.R301G	PCDH9_uc001vil.2_Missense_Mutation_p.R301G|PCDH9_uc010thl.1_Missense_Mutation_p.R301G|PCDH9_uc001vin.3_Missense_Mutation_p.R301G	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	301	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		GCAAAGAGTCTTTTGGTTGCA	0.458000												
PIBF1	10464	broad.mit.edu	37	13	73372083	73372083	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:73372083A>C	uc001vjc.2	+	5	896	c.591A>C	c.(589-591)GAA>GAC	p.E197D	PIBF1_uc001vja.1_Missense_Mutation_p.E197D|PIBF1_uc010aeo.1_RNA|PIBF1_uc001vjb.2_Missense_Mutation_p.E197D|PIBF1_uc010aep.2_Intron	NM_006346	NP_006337	Q8WXW3	PIBF1_HUMAN	progesterone-induced blocking factor 1	197						centrosome				ovary(1)|breast(1)	2		Prostate(6;0.00191)|Breast(118;0.0736)|Acute lymphoblastic leukemia(28;0.0865)		GBM - Glioblastoma multiforme(99;0.000664)		TAAGAAAGGAAATCTGTGAAC	0.299000												
PIBF1	10464	broad.mit.edu	37	13	73396078	73396078	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:73396078A>G	uc001vjc.2	+	6	1069	c.764A>G	c.(763-765)CAG>CGG	p.Q255R	PIBF1_uc001vja.1_Missense_Mutation_p.Q255R|PIBF1_uc010aeo.1_RNA|PIBF1_uc001vjb.2_Missense_Mutation_p.Q255R|PIBF1_uc010aep.2_Intron	NM_006346	NP_006337	Q8WXW3	PIBF1_HUMAN	progesterone-induced blocking factor 1	255						centrosome				ovary(1)|breast(1)	2		Prostate(6;0.00191)|Breast(118;0.0736)|Acute lymphoblastic leukemia(28;0.0865)		GBM - Glioblastoma multiforme(99;0.000664)		CAGTTAATTCAGCAAGGTGAC	0.303000												
MYCBP2	23077	broad.mit.edu	37	13	77635873	77635873	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:77635873T>G	uc001vkf.2	-	76	12804	c.12713A>C	c.(12712-12714)AAT>ACT	p.N4238T	MYCBP2_uc010aev.2_Missense_Mutation_p.N3642T|MYCBP2_uc001vke.2_Missense_Mutation_p.N855T	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	4238					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TCCACAGACATTGCATAAAAT	0.378000												
MYCBP2	23077	broad.mit.edu	37	13	77759309	77759309	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:77759309A>G	uc001vkf.2	-	33	4625	c.4534T>C	c.(4534-4536)TTT>CTT	p.F1512L	MYCBP2_uc010aev.2_Missense_Mutation_p.F916L	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	1512					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		AAAGAATGAAAGCAGGCAGTG	0.398000												
DOCK9	23348	broad.mit.edu	37	13	99452705	99452705	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:99452705T>G	uc001vnt.2	-	52	5853	c.5798A>C	c.(5797-5799)AAG>ACG	p.K1933T	DOCK9_uc001vnw.2_Missense_Mutation_p.K1932T|DOCK9_uc001vnq.2_Missense_Mutation_p.K480T|DOCK9_uc001vnr.2_Missense_Mutation_p.K562T|DOCK9_uc010tin.1_Missense_Mutation_p.K551T|DOCK9_uc001vns.2_Missense_Mutation_p.K468T|DOCK9_uc010tio.1_Missense_Mutation_p.K588T|DOCK9_uc010tip.1_Missense_Mutation_p.K629T	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	1933	DHR-2.				blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					AGGGATGCGCTTCTTCACATA	0.517000												
MYO16	23026	broad.mit.edu	37	13	109704747	109704747	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:109704747A>C	uc001vqt.1	+	25	3032	c.2906A>C	c.(2905-2907)AAG>ACG	p.K969T	MYO16_uc010agk.1_Missense_Mutation_p.K991T|MYO16_uc001vqu.1_Missense_Mutation_p.K769T|MYO16_uc010tjh.1_Missense_Mutation_p.K481T	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	969	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CGAGGACATAAGTCTGCCCTG	0.368000												
MYO16	23026	broad.mit.edu	37	13	109704765	109704765	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:109704765A>C	uc001vqt.1	+	25	3050	c.2924A>C	c.(2923-2925)AAG>ACG	p.K975T	MYO16_uc010agk.1_Missense_Mutation_p.K997T|MYO16_uc001vqu.1_Missense_Mutation_p.K775T|MYO16_uc010tjh.1_Missense_Mutation_p.K487T	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	975	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CTGCTCAGTAAGAAAATGACA	0.343000												
ATP11A	23250	broad.mit.edu	37	13	113487306	113487306	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr13:113487306G>A	uc001vsi.3	+	14	1616	c.1528G>A	c.(1528-1530)GAC>AAC	p.D510N	ATP11A_uc001vsj.3_Missense_Mutation_p.D510N|ATP11A_uc001vsm.1_Missense_Mutation_p.D386N	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	510	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				ATCCTCGCCCGACGAGGTGGC	0.632000												
OR4K5	79317	broad.mit.edu	37	14	20389223	20389223	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:20389223T>C	uc010tkw.1	+	1	458	c.458T>C	c.(457-459)TTG>TCG	p.L153S		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTGTGAGCTTGGTGCACACA	0.433000												
RNASE10	338879	broad.mit.edu	37	14	20979222	20979222	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:20979222A>C	uc010tlj.1	+	1	592	c.592A>C	c.(592-594)AAA>CAA	p.K198Q	RNASE10_uc001vxp.2_Missense_Mutation_p.K226Q	NM_001012975	NP_001012993	Q5GAN6	RNS10_HUMAN	ribonuclease, RNase A family, 10 (non-active)	198						extracellular region	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00123)		Epithelial(56;1.81e-07)|all cancers(55;1.86e-06)	GBM - Glioblastoma multiforme(265;0.022)|READ - Rectum adenocarcinoma(17;0.191)		TTCTGTTATAAAAAAGCACAT	0.338000												
MYH6	4624	broad.mit.edu	37	14	23853762	23853762	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:23853762T>G	uc001wjv.2	-	36	5521	c.5454A>C	c.(5452-5454)GAA>GAC	p.E1818D		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1818	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GCACCCGCGCTTCCAGCTTCT	0.632000												
RNF31	55072	broad.mit.edu	37	14	24627108	24627108	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:24627108A>T	uc001wmn.1	+	17	2978	c.2729A>T	c.(2728-2730)AAA>ATA	p.K910I	RNF31_uc001wml.1_Missense_Mutation_p.K759I|RNF31_uc010alg.1_Missense_Mutation_p.K669I|RNF31_uc001wmo.1_Missense_Mutation_p.K377I|RNF31_uc001wmp.2_RNA|RNF31_uc010alh.1_Missense_Mutation_p.K94I	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	910	IBR-type 2.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		TTCTGCCAGAAATGTCCAGAG	0.597000												
TSSK4	283629	broad.mit.edu	37	14	24675723	24675723	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:24675723A>C	uc001wng.2	+	2	402	c.234A>C	c.(232-234)AAA>AAC	p.K78N	TM9SF1_uc010tob.1_Intron|TSSK4_uc001wne.2_Missense_Mutation_p.K2N|TSSK4_uc001wnf.2_5'UTR|TSSK4_uc001wnh.2_Missense_Mutation_p.K78N	NM_174944	NP_777604	Q6SA08	TSSK4_HUMAN	testis-specific serine kinase 4	78	Protein kinase.				cell differentiation|multicellular organismal development|positive regulation of CREB transcription factor activity|spermatogenesis		ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity				0				GBM - Glioblastoma multiforme(265;0.018)		AGGTAATGAAAGTCTTGCGGC	0.522000												
HECTD1	25831	broad.mit.edu	37	14	31575893	31575893	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:31575893A>G	uc001wrc.1	-	38	7674	c.7185T>C	c.(7183-7185)AAT>AAC	p.N2395N	HECTD1_uc001wra.1_Silent_p.N521N|HECTD1_uc001wrb.1_Silent_p.N521N	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	2395	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		AACCTGATGGATTCTTCAGCA	0.363000												
HEATR5A	25938	broad.mit.edu	37	14	31771644	31771644	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:31771644T>A	uc001wrf.3	-	27	4519	c.4442A>T	c.(4441-4443)CAG>CTG	p.Q1481L	HEATR5A_uc010ami.2_Intron	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	1768							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		CGAAGATAACTGGCCCCCAGG	0.468000												
ARHGAP5	394	broad.mit.edu	37	14	32560921	32560921	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:32560921T>C	uc001wrl.2	+	2	1285	c.1046T>C	c.(1045-1047)CTT>CCT	p.L349P	ARHGAP5_uc001wrm.2_Missense_Mutation_p.L349P|ARHGAP5_uc001wrn.2_Missense_Mutation_p.L349P|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	349					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		TTTAACACTCTTTTGCCAAAT	0.313000												
NPAS3	64067	broad.mit.edu	37	14	34269204	34269204	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:34269204A>G	uc001wru.2	+	12	1755	c.1691A>G	c.(1690-1692)GAG>GGG	p.E564G	NPAS3_uc001wrs.2_Missense_Mutation_p.E551G|NPAS3_uc001wrt.2_Missense_Mutation_p.E532G|NPAS3_uc001wrv.2_Missense_Mutation_p.E534G	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	564					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		GTGGAGAGCGAGTCGGACCTG	0.667000												
MDGA2	161357	broad.mit.edu	37	14	47426820	47426820	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:47426820A>C	uc001wwj.3	-	9	1835	c.1639T>G	c.(1639-1641)TTG>GTG	p.L547V	MDGA2_uc001wwi.3_Missense_Mutation_p.L318V|MDGA2_uc010ani.2_Missense_Mutation_p.L107V	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	547	Ig-like 6.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						CGGATTTCCAAGAATGCTGGT	0.448000												
ATP5S	27109	broad.mit.edu	37	14	50790684	50790684	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:50790684A>C	uc001wxw.1	+	4	1075	c.383A>C	c.(382-384)AAA>ACA	p.K128T	ATP5S_uc001wxx.1_Intron|ATP5S_uc010ant.1_Missense_Mutation_p.K100T	NM_001003803	NP_001003803	Q99766	ATP5S_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	128					ATP biosynthetic process	mitochondrial inner membrane|proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity			ovary(1)|skin(1)	2	all_epithelial(31;0.000636)|Breast(41;0.0102)			OV - Ovarian serous cystadenocarcinoma(311;0.0685)		CATGTTGAAAAAATAAGGCTG	0.289000												
TXNDC16	57544	broad.mit.edu	37	14	52981657	52981657	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:52981657C>T	uc001wzs.2	-	8	995	c.546G>A	c.(544-546)GTG>GTA	p.V182V	TXNDC16_uc010tqu.1_Silent_p.V177V|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	182					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					TAGTCCCATACACAAAAGCGG	0.358000												
JKAMP	51528	broad.mit.edu	37	14	59965516	59965516	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:59965516A>C	uc001xei.3	+	5	1074	c.572A>C	c.(571-573)AAG>ACG	p.K191T	JKAMP_uc001xef.3_Missense_Mutation_p.K177T|JKAMP_uc001xeh.3_Missense_Mutation_p.K171T|JKAMP_uc001xeg.3_Missense_Mutation_p.K185T|JKAMP_uc010try.1_Missense_Mutation_p.K114T|JKAMP_uc001xej.3_Missense_Mutation_p.K114T	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	192	Cytoplasmic (Potential).				ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						CTTCTGGTGAAGAAGATTGCA	0.358000												
ESR2	2100	broad.mit.edu	37	14	64716368	64716368	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:64716368A>G	uc001xha.1	-	7	1589	c.1121T>C	c.(1120-1122)CTG>CCG	p.L374P	ESR2_uc001xgu.2_Missense_Mutation_p.L374P|ESR2_uc001xgv.2_Missense_Mutation_p.L374P|ESR2_uc001xgw.2_RNA|ESR2_uc001xgx.2_Missense_Mutation_p.L374P|ESR2_uc001xgy.1_Missense_Mutation_p.L374P|ESR2_uc001xgz.1_Missense_Mutation_p.L374P|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Intron|ESR2_uc010aqd.1_Intron	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	374	Steroid-binding.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	AAAGATTTCCAGAATTCCTTC	0.388000												
SPTB	6710	broad.mit.edu	37	14	65252275	65252275	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:65252275A>C	uc001xht.2	-	17	3889	c.3835T>G	c.(3835-3837)TTC>GTC	p.F1279V	SPTB_uc001xhr.2_Missense_Mutation_p.F1279V|SPTB_uc001xhs.2_Missense_Mutation_p.F1279V|SPTB_uc001xhu.2_Missense_Mutation_p.F1279V	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1279	Spectrin 10.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TTCTGGAGGAAGTTCTGTAGC	0.537000												
SLC8A3	6547	broad.mit.edu	37	14	70515511	70515511	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:70515511A>C	uc001xly.2	-	7	3134	c.2380T>G	c.(2380-2382)TTC>GTC	p.F794V	SLC8A3_uc001xlu.2_Missense_Mutation_p.F151V|SLC8A3_uc001xlv.2_Missense_Mutation_p.F165V|SLC8A3_uc001xlw.2_Missense_Mutation_p.F791V|SLC8A3_uc001xlx.2_Missense_Mutation_p.F792V|SLC8A3_uc001xlz.2_Missense_Mutation_p.F788V|SLC8A3_uc010ara.2_RNA|SLC8A3_uc001xma.2_Missense_Mutation_p.F151V	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	794	Helical; (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		AATGCCACGAAAACAACAGCT	0.512000												
SIPA1L1	26037	broad.mit.edu	37	14	72117215	72117215	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:72117215T>G	uc001xms.2	+	5	2330	c.1982T>G	c.(1981-1983)CTT>CGT	p.L661R	SIPA1L1_uc001xmt.2_Missense_Mutation_p.L661R|SIPA1L1_uc001xmu.2_Missense_Mutation_p.L661R|SIPA1L1_uc001xmv.2_Missense_Mutation_p.L661R|SIPA1L1_uc010ttm.1_Missense_Mutation_p.L136R	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	661	Rap-GAP.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CGAGCACAGCTTGATACCAAA	0.428000												
SIPA1L1	26037	broad.mit.edu	37	14	72139141	72139141	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:72139141A>C	uc001xms.2	+	9	3254	c.2906A>C	c.(2905-2907)AAC>ACC	p.N969T	SIPA1L1_uc001xmt.2_Missense_Mutation_p.N969T|SIPA1L1_uc001xmu.2_Missense_Mutation_p.N969T|SIPA1L1_uc001xmv.2_Missense_Mutation_p.N969T|SIPA1L1_uc010ttm.1_Missense_Mutation_p.N444T	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	969	PDZ.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		TTCCATGTCAACTATGAGGGC	0.527000												
YLPM1	56252	broad.mit.edu	37	14	75283360	75283360	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:75283360A>G	uc001xqj.3	+	13	5776	c.5652A>G	c.(5650-5652)AAA>AAG	p.K1884K	YLPM1_uc001xql.3_RNA|YLPM1_uc001xqm.1_Silent_p.K367K	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1689					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		AAGAAGAAAAAGATCCAGATT	0.363000												
C14orf156	81892	broad.mit.edu	37	14	78183895	78183895	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:78183895A>G	uc001xue.3	+	4	351	c.321A>G	c.(319-321)AAA>AAG	p.K107K		NM_031210	NP_112487	Q9GZT3	SLIRP_HUMAN	SRA stem-loop-interacting RNA-binding protein	107					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	nucleotide binding|RNA binding				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0276)		ATGAAAAGAAAGATTTTTGAG	0.353000												
ATG2B	55102	broad.mit.edu	37	14	96783531	96783531	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:96783531A>C	uc001yfi.2	-	20	3526	c.3161T>G	c.(3160-3162)GTT>GGT	p.V1054G		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	1054										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		ATTCAGAAGAACTGAGAGAAA	0.343000												
AHNAK2	113146	broad.mit.edu	37	14	105415198	105415198	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr14:105415198T>A	uc010axc.1	-	7	6710	c.6590A>T	c.(6589-6591)AAG>ATG	p.K2197M	AHNAK2_uc001ypx.2_Missense_Mutation_p.K2097M	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2197						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GTCAGTGGTCTTGAGGTCCCC	0.642000												
HERC2	8924	broad.mit.edu	37	15	28478297	28478297	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:28478297T>C	uc001zbj.2	-	30	4776	c.4670A>G	c.(4669-4671)AAG>AGG	p.K1557R		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1557					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CTTACCTCTCTTTTTCCTTCG	0.378000												
TRPM1	4308	broad.mit.edu	37	15	31330353	31330353	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:31330353A>C	uc001zfm.2	-	18	2395	c.2267T>G	c.(2266-2268)CTT>CGT	p.L756R	TRPM1_uc010azy.2_Missense_Mutation_p.L663R|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	756	Helical; (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		GGGGGGTAGAAGAATCCCCAT	0.348000												
BUB1B	701	broad.mit.edu	37	15	40498573	40498573	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:40498573A>C	uc001zkx.3	+	15	2135	c.1923A>C	c.(1921-1923)GAA>GAC	p.E641D	BUB1B_uc010ucl.1_Missense_Mutation_p.E509D	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	641					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		TGTTACCGGAAGAAGATCTAG	0.463000			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome			
RPUSD2	27079	broad.mit.edu	37	15	40866189	40866189	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:40866189A>G	uc001zmd.1	+	3	1367	c.1367A>G	c.(1366-1368)GAG>GGG	p.E456G		NM_152260	NP_689473	Q8IZ73	RUSD2_HUMAN	RNA pseudouridylate synthase domain containing	456					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			skin(1)	1		all_cancers(109;2.74e-14)|all_epithelial(112;1.64e-11)|Lung NSC(122;6.69e-09)|all_lung(180;1.22e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.1e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0786)		GACCTGGAAGAGTTGGCTGCA	0.567000												
DNAJC17	55192	broad.mit.edu	37	15	41066632	41066632	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:41066632A>G	uc001zms.1	-	9	614	c.603T>C	c.(601-603)TAT>TAC	p.Y201Y	DNAJC17_uc010bbz.1_RNA|DNAJC17_uc010bca.1_RNA|DNAJC17_uc010bcb.1_RNA	NM_018163	NP_060633	Q9NVM6	DJC17_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 17	201	RRM.				protein folding		heat shock protein binding|nucleotide binding|RNA binding|unfolded protein binding				0		all_cancers(109;4.16e-14)|all_epithelial(112;9.68e-12)|Lung NSC(122;3.19e-09)|all_lung(180;6.45e-08)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		GAACCTCACCATACTGTGGGG	0.572000												
MGA	23269	broad.mit.edu	37	15	42053967	42053967	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:42053967C>T	uc010ucy.1	+	21	7610	c.7429C>T	c.(7429-7431)CAG>TAG	p.Q2477*	MGA_uc010ucz.1_Nonsense_Mutation_p.Q2268*|MGA_uc010uda.1_Nonsense_Mutation_p.Q1093*	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2438						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		ACTAACAGATCAGGCAGACAA	0.363000												
PLA2G4E	123745	broad.mit.edu	37	15	42281732	42281732	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:42281732G>T	uc001zow.1	-	14	1517	c.1517C>A	c.(1516-1518)CCC>CAC	p.P506H	PLA2G4E_uc010udc.1_5'UTR|PLA2G4E_uc001zov.1_Missense_Mutation_p.P159H	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	523	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		CACCTCGTAGGGGGAGAACTC	0.652000											OREG0023079	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
TP53BP1	7158	broad.mit.edu	37	15	43748755	43748755	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:43748755A>T	uc001zrs.2	-	12	2184	c.2036T>A	c.(2035-2037)CTC>CAC	p.L679H	TP53BP1_uc010udp.1_Missense_Mutation_p.L679H|TP53BP1_uc001zrq.3_Missense_Mutation_p.L684H|TP53BP1_uc001zrr.3_Missense_Mutation_p.L684H|TP53BP1_uc010udq.1_Missense_Mutation_p.L684H	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	679					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		TTCTTCTTTGAGTTCCTCTCC	0.443000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes				
DUOX1	53905	broad.mit.edu	37	15	45448048	45448048	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:45448048T>G	uc001zus.1	+	29	3969	c.3623T>G	c.(3622-3624)TTT>TGT	p.F1208C	DUOX1_uc001zut.1_Missense_Mutation_p.F1208C|DUOX1_uc010bee.1_Missense_Mutation_p.F588C	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	1208	Helical; (Potential).|Interaction with TXNDC11 (By similarity).|Ferric oxidoreductase.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		ATGTATGTCTTTGCCTCCCAC	0.562000												
SQRDL	58472	broad.mit.edu	37	15	45954208	45954208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:45954208C>T	uc001zvt.2	+	4	479	c.290C>T	c.(289-291)TCC>TTC	p.S97F	SQRDL_uc001zvu.2_Missense_Mutation_p.S97F|SQRDL_uc001zvv.2_Missense_Mutation_p.S97F	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	97							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		AAACAATTGTCCTCATCTGGT	0.443000												
SEMA6D	80031	broad.mit.edu	37	15	48056380	48056380	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:48056380T>G	uc010bek.2	+	11	1335	c.975T>G	c.(973-975)GGT>GGG	p.G325G	SEMA6D_uc001zvw.2_Silent_p.G325G|SEMA6D_uc001zvx.1_Silent_p.G325G|SEMA6D_uc001zvy.2_Silent_p.G325G|SEMA6D_uc001zvz.2_Silent_p.G325G|SEMA6D_uc001zwa.2_Silent_p.G325G|SEMA6D_uc001zwb.2_Silent_p.G325G|SEMA6D_uc001zwc.2_Silent_p.G325G	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	325	Sema.|Extracellular (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		GCATCCCTGGTTCTGCTGTCT	0.458000												
SLC27A2	11001	broad.mit.edu	37	15	50519317	50519317	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:50519317T>A	uc001zxw.2	+	7	1631	c.1399T>A	c.(1399-1401)TTA>ATA	p.L467I	SLC27A2_uc010bes.2_Missense_Mutation_p.L414I|SLC27A2_uc001zxx.2_Missense_Mutation_p.L232I	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	467	Cytoplasmic (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		TGGAGATCTCTTAATGGTTGA	0.393000												
HDC	3067	broad.mit.edu	37	15	50546770	50546770	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:50546770T>C	uc001zxz.2	-	5	639	c.533A>G	c.(532-534)GAG>GGG	p.E178G	HDC_uc001zxy.2_5'Flank|HDC_uc010uff.1_Missense_Mutation_p.E178G|HDC_uc010bet.1_Missense_Mutation_p.E99G|HDC_uc010beu.1_Missense_Mutation_p.E178G	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	178					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	TAGGCAGGACTCATCAGCATC	0.557000												
CYP19A1	1588	broad.mit.edu	37	15	51507411	51507411	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:51507411T>C	uc001zyz.3	-	9	1128	c.877A>G	c.(877-879)AGA>GGA	p.R293G	CYP19A1_uc001zza.3_Missense_Mutation_p.R293G|CYP19A1_uc001zzb.2_Missense_Mutation_p.R293G	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	293					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	ACATTCTCTCTTGTCAGGTCA	0.418000												
DMXL2	23312	broad.mit.edu	37	15	51772992	51772992	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:51772992T>C	uc002abf.2	-	24	6536	c.6311A>G	c.(6310-6312)AAA>AGA	p.K2104R	DMXL2_uc002abd.2_Missense_Mutation_p.K174R|DMXL2_uc010ufy.1_Missense_Mutation_p.K2104R|DMXL2_uc010bfa.2_Missense_Mutation_p.K1468R	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2104						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ACTCTCTACTTTGGAATATGT	0.373000												
DMXL2	23312	broad.mit.edu	37	15	51783905	51783905	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:51783905T>G	uc002abf.2	-	20	5048	c.4823A>C	c.(4822-4824)GAG>GCG	p.E1608A	DMXL2_uc010ufy.1_Missense_Mutation_p.E1608A|DMXL2_uc010bfa.2_Missense_Mutation_p.E972A	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1608						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TTCTTCAGCCTCAGAATGAAA	0.393000												
MYO5A	4644	broad.mit.edu	37	15	52725446	52725446	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:52725446A>G	uc002aby.2	-	2	308	c.64T>C	c.(64-66)TGG>CGG	p.W22R	MYO5A_uc002abx.3_Missense_Mutation_p.W22R|MYO5A_uc010uge.1_5'UTR	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	22	Myosin head-like.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		GCTGACTTCCAGACTTCCTCT	0.378000												
UNC13C	440279	broad.mit.edu	37	15	54305506	54305506	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:54305506A>C	uc002ack.2	+	1	406	c.406A>C	c.(406-408)AGT>CGT	p.S136R		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	136					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TGAACTAAGGAGTAGCACAGA	0.443000												
PIGB	9488	broad.mit.edu	37	15	55612587	55612587	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:55612587T>G	uc002act.2	+	2	594	c.278T>G	c.(277-279)GTT>GGT	p.V93G	uc002acs.2_5'Flank|PIGB_uc010ugg.1_Intron	NM_004855	NP_004846	Q92521	PIGB_HUMAN	phosphatidylinositol glycan, class B	93					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	integral to membrane|intrinsic to endoplasmic reticulum membrane	glycolipid mannosyltransferase activity				0				all cancers(107;0.0255)		TCTCTTGAAGTTTCACATCAC	0.328000												
ZNF280D	54816	broad.mit.edu	37	15	56981564	56981564	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:56981564A>C	uc002adu.2	-	8	821	c.604T>G	c.(604-606)TCC>GCC	p.S202A	ZNF280D_uc002adv.2_Missense_Mutation_p.S189A|ZNF280D_uc010bfq.2_Missense_Mutation_p.S202A|ZNF280D_uc002adw.1_Missense_Mutation_p.S230A|ZNF280D_uc010bfr.1_RNA	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	202					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		ACAGCTGAGGAATTTGCTCCA	0.358000												
RNF111	54778	broad.mit.edu	37	15	59373169	59373169	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:59373169T>C	uc002afv.2	+	8	2262	c.1983T>C	c.(1981-1983)GCT>GCC	p.A661A	RNF111_uc002afs.2_Silent_p.A661A|RNF111_uc002aft.2_Silent_p.A661A|RNF111_uc002afu.2_Silent_p.A660A|RNF111_uc002afw.2_Silent_p.A661A|RNF111_uc002afx.2_Silent_p.A187A	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	661	Pro-rich.				multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		ATCATCAAGCTTCTGCCTGCC	0.438000												
MYO1E	4643	broad.mit.edu	37	15	59500962	59500962	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:59500962T>C	uc002aga.2	-	14	1820	c.1448A>G	c.(1447-1449)CAG>CGG	p.Q483R		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	483	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		CTGAAGTTTCTGGAGCAGCGT	0.517000												
MYO1E	4643	broad.mit.edu	37	15	59553637	59553637	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:59553637A>C	uc002aga.2	-	3	591	c.219T>G	c.(217-219)ATT>ATG	p.I73M		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	73	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		GGTACATTTCAATTTCCTTTT	0.363000												
USP3	9960	broad.mit.edu	37	15	63882994	63882994	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:63882994A>G	uc002amf.2	+	15	1661	c.1532A>G	c.(1531-1533)CAC>CGC	p.H511R	USP3_uc002amg.2_Missense_Mutation_p.H426R|USP3_uc002amh.2_Missense_Mutation_p.H489R|USP3_uc010uij.1_Missense_Mutation_p.H467R|USP3_uc010uik.1_Missense_Mutation_p.H262R|USP3_uc010bgs.2_Missense_Mutation_p.H494R|USP3_uc002ami.2_Missense_Mutation_p.H342R|uc002amj.2_Intron|uc002amk.2_Intron|uc002aml.2_Intron	NM_006537	NP_006528	Q9Y6I4	UBP3_HUMAN	ubiquitin thiolesterase 3	511					DNA repair|histone deubiquitination|mitotic cell cycle|regulation of protein stability|ubiquitin-dependent protein catabolic process	nuclear chromatin	histone binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(80;0.0187)		TACGTGGAACACCAGGCCAAA	0.458000												
LARP6	55323	broad.mit.edu	37	15	71124941	71124941	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:71124941T>C	uc002ass.2	-	3	997	c.926A>G	c.(925-927)GAG>GGG	p.E309G		NM_018357	NP_060827	Q9BRS8	LARP6_HUMAN	La ribonucleoprotein domain family, member 6	309					RNA processing	Golgi apparatus|nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0						CGCAGTGGGCTCCTCGTCATG	0.493000												
SEMA7A	8482	broad.mit.edu	37	15	74704005	74704005	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:74704005A>G	uc002axv.2	-	12	1509	c.1469T>C	c.(1468-1470)CTG>CCG	p.L490P	SEMA7A_uc010ulk.1_Missense_Mutation_p.L325P|SEMA7A_uc010ull.1_Missense_Mutation_p.L476P	NM_003612	NP_003603	O75326	SEM7A_HUMAN	semaphorin 7A isoform 1 preproprotein	490	Sema.				axon guidance|immune response|inflammatory response|integrin-mediated signaling pathway|positive regulation of axon extension|positive regulation of ERK1 and ERK2 cascade|positive regulation of macrophage cytokine production|regulation of inflammatory response	anchored to membrane|external side of plasma membrane	receptor activity			breast(1)|central_nervous_system(1)	2						ACACAGGTCCAGGGGCACCTG	0.647000												
PTPN9	5780	broad.mit.edu	37	15	75798030	75798030	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:75798030A>T	uc002bal.2	-	7	1462	c.954T>A	c.(952-954)ACT>ACA	p.T318T		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	318	Tyrosine-protein phosphatase.					cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						AACAGTGGAAAGTGCCAACAG	0.483000												
C15orf27	123591	broad.mit.edu	37	15	76449088	76449088	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:76449088A>C	uc002bbq.2	+	4	526	c.371A>C	c.(370-372)AAG>ACG	p.K124T	C15orf27_uc010bkp.2_Intron|C15orf27_uc002bbr.2_Intron	NM_152335	NP_689548	Q2M3C6	CO027_HUMAN	hypothetical protein LOC123591	124						integral to membrane					0						ATAGATATAAAGCTTCTCCAG	0.428000												
SCAPER	49855	broad.mit.edu	37	15	76673782	76673782	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:76673782T>C	uc002bby.2	-	27	3701	c.3642A>G	c.(3640-3642)CAA>CAG	p.Q1214Q	SCAPER_uc010bkr.2_Silent_p.Q522Q|SCAPER_uc002bbx.2_Silent_p.Q968Q|SCAPER_uc002bbz.1_Silent_p.Q1085Q	NM_020843	NP_065894	Q9BY12	SCAPE_HUMAN	S-phase cyclin A-associated protein in the ER	1213						endoplasmic reticulum|nucleus	zinc ion binding			large_intestine(1)|lung(1)|ovary(1)	3						GAATGGCCACTTGGATGGTAT	0.448000												
ACSBG1	23205	broad.mit.edu	37	15	78486286	78486286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:78486286G>A	uc002bdh.2	-	4	586	c.530C>T	c.(529-531)ACA>ATA	p.T177I	ACSBG1_uc010umw.1_Missense_Mutation_p.T173I|ACSBG1_uc010umx.1_Intron|ACSBG1_uc010umy.1_Missense_Mutation_p.T70I	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin	177					long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						TGCAAATACTGTGCCCACTGC	0.637000												
RASGRF1	5923	broad.mit.edu	37	15	79350698	79350698	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:79350698T>G	uc002beq.2	-	3	884	c.509A>C	c.(508-510)GAG>GCG	p.E170A	RASGRF1_uc002bep.2_Missense_Mutation_p.E170A|RASGRF1_uc010blm.1_Missense_Mutation_p.E92A|RASGRF1_uc002ber.3_Missense_Mutation_p.E170A	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	170					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CCGCTCGATCTCGATCTCCCC	0.612000												
IL16	3603	broad.mit.edu	37	15	81592241	81592241	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:81592241A>C	uc002bgh.3	+	14	2950	c.2574A>C	c.(2572-2574)GGA>GGC	p.G858G	IL16_uc010blq.1_Silent_p.G812G|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Silent_p.G900G|IL16_uc002bgg.2_Silent_p.G858G|IL16_uc002bgi.1_Silent_p.G248G|IL16_uc002bgj.2_Silent_p.G352G|IL16_uc002bgk.2_Silent_p.G157G|IL16_uc002bgl.1_Silent_p.G157G|IL16_uc010unq.1_Silent_p.G157G	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	858					immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						CTGACAAAGGAGCCCAGAGAC	0.512000												
FSD2	123722	broad.mit.edu	37	15	83447586	83447586	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:83447586T>G	uc002bjd.2	-	6	1210	c.1043A>C	c.(1042-1044)GAG>GCG	p.E348A	FSD2_uc010uol.1_Missense_Mutation_p.E348A|FSD2_uc010uom.1_Missense_Mutation_p.E348A	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	348										central_nervous_system(1)	1						GTCTTCAAACTCAGGCTGTGC	0.483000												
ZNF592	9640	broad.mit.edu	37	15	85326908	85326908	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:85326908C>T	uc002bld.2	+	4	1338	c.1002C>T	c.(1000-1002)AGC>AGT	p.S334S	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	334					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GTCCCCGGAGCCCTCTGGAGG	0.557000												
ALPK3	57538	broad.mit.edu	37	15	85383097	85383097	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:85383097T>G	uc002ble.2	+	5	1360	c.1193T>G	c.(1192-1194)ATC>AGC	p.I398S		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	398					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CTGCGCGAGATCGAGCAGAGC	0.637000												
ALPK3	57538	broad.mit.edu	37	15	85411511	85411511	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:85411511A>G	uc002ble.2	+	14	5715	c.5548A>G	c.(5548-5550)AAA>GAA	p.K1850E	ALPK3_uc010upc.1_Missense_Mutation_p.K151E	NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1850					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TGCTGGCAGGAAAGGCTCCCA	0.632000												
PDE8A	5151	broad.mit.edu	37	15	85656658	85656658	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:85656658A>T	uc002blh.2	+	13	1354	c.1165A>T	c.(1165-1167)ATT>TTT	p.I389F	PDE8A_uc002bli.2_Missense_Mutation_p.I343F|PDE8A_uc010bnc.2_Missense_Mutation_p.I142F|PDE8A_uc010bnd.2_Missense_Mutation_p.I142F|PDE8A_uc002blj.2_Missense_Mutation_p.I9F|PDE8A_uc002blk.2_Missense_Mutation_p.I9F	NM_002605	NP_002596	O60658	PDE8A_HUMAN	phosphodiesterase 8A isoform 1	389					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(223;0.227)		BRCA - Breast invasive adenocarcinoma(143;0.0608)			TTCCATGACAATTGAGGCGCC	0.502000												
DET1	55070	broad.mit.edu	37	15	89074106	89074106	+	Silent	SNP	C	C	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:89074106C>G	uc002bmr.2	-	2	983	c.831G>C	c.(829-831)CGG>CGC	p.R277R	DET1_uc002bmp.3_RNA|DET1_uc010bnk.2_RNA|DET1_uc002bmq.2_Silent_p.R288R	NM_001144074	NP_001137546	Q7L5Y6	DET1_HUMAN	de-etiolated 1 isoform 2	277						nucleus				lung(1)|pancreas(1)	2	Lung NSC(78;0.105)|all_lung(78;0.182)		BRCA - Breast invasive adenocarcinoma(143;0.188)			TCTGACTGTCCCGCTGTACCT	0.522000												
IQGAP1	8826	broad.mit.edu	37	15	91009655	91009655	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:91009655A>C	uc002bpl.1	+	17	2123	c.2022A>C	c.(2020-2022)AAA>AAC	p.K674N		NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	674					energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			CCAAGAAGAAAAAACTGGCAG	0.463000												
BLM	641	broad.mit.edu	37	15	91358410	91358410	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:91358410T>C	uc002bpr.2	+	22	4252	c.4155T>C	c.(4153-4155)ACT>ACC	p.T1385T	BLM_uc010uqh.1_Silent_p.T1385T|BLM_uc010uqi.1_Silent_p.T1010T|BLM_uc010bnx.2_Silent_p.T1254T|BLM_uc002bpt.2_Silent_p.T360T	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	1385					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			CCTCACATACTTCTCAAGCGA	0.423000			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome			
C15orf32	145858	broad.mit.edu	37	15	93015408	93015408	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:93015408A>G	uc002brc.1	+	1	502	c.30A>G	c.(28-30)TCA>TCG	p.S10S	C15orf32_uc010bod.1_RNA	NM_153040	NP_694585	Q32M92	CO032_HUMAN	hypothetical protein LOC145858	10										ovary(1)	1	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0493)|OV - Ovarian serous cystadenocarcinoma(32;0.125)			TGGATGCTTCAAAGGAAGACT	0.338000												
SPATA8	145946	broad.mit.edu	37	15	97326897	97326897	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:97326897T>C	uc002bue.2	+	1	222	c.12T>C	c.(10-12)GCT>GCC	p.A4A	uc010uro.1_5'Flank|uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	4										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			TGGCCCCGGCTGGGATGTCAG	0.577000												
IGF1R	3480	broad.mit.edu	37	15	99192862	99192862	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:99192862T>A	uc002bul.2	+	1	102	c.52T>A	c.(52-54)TTT>ATT	p.F18I	IGF1R_uc010urq.1_Missense_Mutation_p.F18I|IGF1R_uc010bon.2_Missense_Mutation_p.F18I	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	18					anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	GGGGCTCCTGTTTCTCTCCGC	0.572000												
TTC23	64927	broad.mit.edu	37	15	99696485	99696485	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:99696485C>T	uc002bur.2	-	11	1542	c.1011G>A	c.(1009-1011)CTG>CTA	p.L337L	TTC23_uc002bus.2_Silent_p.L337L|TTC23_uc002but.2_Silent_p.L337L|TTC23_uc002buu.2_Silent_p.L337L|TTC23_uc002buv.2_Silent_p.L337L|TTC23_uc002bux.2_Silent_p.L337L|TTC23_uc002buw.2_Silent_p.L337L|TTC23_uc010boq.2_RNA|TTC23_uc002buy.2_Silent_p.L337L|TTC23_uc010bor.2_Silent_p.L337L|TTC23_uc002buz.2_Silent_p.L337L	NM_022905	NP_075056	Q5W5X9	TTC23_HUMAN	tetratricopeptide repeat domain 23	337							binding				0	all_cancers(4;1.49e-13)|Lung NSC(78;0.000545)|all_lung(78;0.00121)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		all cancers(5;8.11e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00215)			GGGACTCTCTCAGGATCGAGG	0.502000												
LRRK1	79705	broad.mit.edu	37	15	101609038	101609038	+	Silent	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr15:101609038T>A	uc002bwr.2	+	34	6352	c.6033T>A	c.(6031-6033)ACT>ACA	p.T2011T	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bws.2_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	2011					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AGGCTTGCACTCGCAAGAGAA	0.617000												
NUBP2	10101	broad.mit.edu	37	16	1836884	1836884	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:1836884T>C	uc002cmw.3	+	3	351	c.262T>C	c.(262-264)TCG>CCG	p.S88P	NUBP2_uc002cmx.3_Intron|NUBP2_uc010brx.2_Missense_Mutation_p.S28P	NM_012225	NP_036357	Q9Y5Y2	NUBP2_HUMAN	nucleotide binding protein 2 (MinD homolog, E.	88						microtubule organizing center|nucleus	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|protein binding				0						GCAGAGCATCTCGCTCATGTC	0.697000												
RPL3L	6123	broad.mit.edu	37	16	1995925	1995925	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:1995925A>C	uc002cnh.2	-	8	1005	c.958T>G	c.(958-960)TTC>GTC	p.F320V	SEPX1_uc010uvs.1_5'Flank	NM_005061	NP_005052	Q92901	RL3L_HUMAN	ribosomal protein L3-like	320					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	RNA binding|structural constituent of ribosome				0						TAGTGGGGGAAGCCACCCTGC	0.597000												
ZSCAN10	84891	broad.mit.edu	37	16	3140576	3140576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:3140576G>A	uc002ctv.1	-	5	782	c.694C>T	c.(694-696)CCC>TCC	p.P232S	ZSCAN10_uc002cty.1_5'UTR|ZSCAN10_uc002ctw.1_Missense_Mutation_p.P150S|ZSCAN10_uc002ctx.1_Missense_Mutation_p.P160S	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	232					negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GCTAAGATGGGAGTGGGCCAG	0.607000												
C16orf71	146562	broad.mit.edu	37	16	4787904	4787904	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:4787904A>C	uc002cxn.2	+	3	695	c.233A>C	c.(232-234)AAG>ACG	p.K78T		NM_139170	NP_631909	Q8IYS4	CP071_HUMAN	hypothetical protein LOC146562	78										central_nervous_system(1)	1						GATGGCGACAAGTCCAGGGCC	0.557000												
PPL	5493	broad.mit.edu	37	16	4951037	4951037	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:4951037T>G	uc002cyd.1	-	5	582	c.492A>C	c.(490-492)CAA>CAC	p.Q164H		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	164					keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						GCTCCTCCACTTGGTGGTCCA	0.617000												
GRIN2A	2903	broad.mit.edu	37	16	10274067	10274067	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:10274067T>G	uc002czo.3	-	2	750	c.202A>C	c.(202-204)AAC>CAC	p.N68H	GRIN2A_uc010uym.1_Missense_Mutation_p.N68H|GRIN2A_uc002czr.3_Missense_Mutation_p.N68H|GRIN2A_uc010buk.2_Missense_Mutation_p.N68H	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	68	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCTACCACGTTCACGTCCAGG	0.637000												
CLEC16A	23274	broad.mit.edu	37	16	11217681	11217681	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:11217681A>C	uc002dao.2	+	21	2581	c.2351A>C	c.(2350-2352)AAG>ACG	p.K784T	CLEC16A_uc002dan.3_Missense_Mutation_p.K766T|CLEC16A_uc002dap.2_5'Flank	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	784										ovary(1)|central_nervous_system(1)	2						CCCCATTCCAAGCCCTTCCCC	0.617000												
GPR139	124274	broad.mit.edu	37	16	20043272	20043272	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:20043272A>C	uc002dgu.1	-	2	1009	c.847T>G	c.(847-849)TTC>GTC	p.F283V	GPR139_uc010vaw.1_Missense_Mutation_p.F190V	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	283	Helical; Name=7; (Potential).					integral to membrane|plasma membrane				ovary(2)	2						CAGTAGAGGAAGAAGTTGATG	0.537000												
NDUFAB1	4706	broad.mit.edu	37	16	23593647	23593647	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:23593647T>G	uc002dlw.2	-	4	457	c.429A>C	c.(427-429)GAA>GAC	p.E143D		NM_005003	NP_004994	O14561	ACPM_HUMAN	NADH dehydrogenase (ubiquinone) 1, alpha/beta	143					fatty acid biosynthetic process|mitochondrial electron transport, NADH to ubiquinone	mitochondrial matrix|mitochondrial respiratory chain complex I	acyl carrier activity|calcium ion binding|cofactor binding|fatty acid binding|NADH dehydrogenase (ubiquinone) activity|phosphopantetheine binding				0				GBM - Glioblastoma multiforme(48;0.0339)	NADH(DB00157)	AATCTACAATTTCTTGTGGAC	0.289000												
C16orf82	162083	broad.mit.edu	37	16	27078600	27078600	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:27078600A>C	uc010vcm.1	+	1	382	c.284A>C	c.(283-285)AAG>ACG	p.K95T		NM_001145545	NP_001139017	Q7Z2V1	TNT_HUMAN	hypothetical protein LOC162083	158											0						GCAGGGGACAAGGAGGGCAGC	0.647000												
ITGAL	3683	broad.mit.edu	37	16	30495458	30495458	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:30495458G>A	uc002dyi.3	+	9	1056	c.880G>A	c.(880-882)GAG>AAG	p.E294K	ITGAL_uc010veu.1_RNA|ITGAL_uc002dyj.3_Missense_Mutation_p.E211K|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	294	VWFA.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	TCAGACCAAGGAGAGTCAGGA	0.443000												
PRR14	78994	broad.mit.edu	37	16	30667596	30667596	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:30667596A>C	uc002dyy.2	+	12	1980	c.1722A>C	c.(1720-1722)GAA>GAC	p.E574D	PRR14_uc002dyz.2_Missense_Mutation_p.E419D|PRR14_uc002dza.2_Missense_Mutation_p.E574D	NM_024031	NP_076936	Q9BWN1	PRR14_HUMAN	proline rich 14	574											0			Colorectal(24;0.103)			TCCTGGAGGAAGAAACAGTAG	0.592000												
SRCAP	10847	broad.mit.edu	37	16	30733499	30733499	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:30733499A>T	uc002dze.1	+	22	3983	c.3598A>T	c.(3598-3600)AAT>TAT	p.N1200Y	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.N1057Y|SRCAP_uc010bzz.1_Missense_Mutation_p.N770Y	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1200	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TCCAGTGGCTAATGCAGGGGG	0.572000												
ORAI3	93129	broad.mit.edu	37	16	30964606	30964606	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:30964606T>G	uc002eac.2	+	2	535	c.329T>G	c.(328-330)CTC>CGC	p.L110R		NM_152288	NP_689501	Q9BRQ5	ORAI3_HUMAN	ORAI calcium release-activated calcium modulator	110	Helical; (Potential).					integral to membrane	protein binding				0						GCTGTGCACCTCTTTGCACTC	0.602000											OREG0023742	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
ITGAD	3681	broad.mit.edu	37	16	31405555	31405555	+	Splice_Site	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:31405555A>G	uc002ebv.1	+	2	81	c.32_splice	c.e2-2	p.V11_splice	ITGAD_uc010vfl.1_Splice_Site_p.V11_splice|ITGAD_uc010cap.1_Splice_Site_p.V11_splice	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor						cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						AATATTCCTCAGTCCTGGCTT	0.483000												
CYLD	1540	broad.mit.edu	37	16	50830253	50830253	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:50830253A>T	uc002egp.1	+	19	3120	c.2705A>T	c.(2704-2706)AAC>ATC	p.N902I	CYLD_uc002egq.1_Missense_Mutation_p.N899I|CYLD_uc002egr.1_Missense_Mutation_p.N899I	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	902					cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				AATGGCTTCAACATTCCTCAA	0.458000			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial			
CCDC135	84229	broad.mit.edu	37	16	57760158	57760158	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:57760158A>C	uc002emi.2	+	13	2026	c.1937A>C	c.(1936-1938)AAG>ACG	p.K646T	CCDC135_uc002emj.2_Missense_Mutation_p.K646T|CCDC135_uc002emk.2_Missense_Mutation_p.K581T	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	646						cytoplasm				central_nervous_system(1)	1						AAAGGCAACAAGATCATCATG	0.652000												
C16orf57	79650	broad.mit.edu	37	16	58048232	58048232	+	Splice_Site	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:58048232T>A	uc002emz.2	+	4	586	c.503_splice	c.e4+2	p.R168_splice	C16orf57_uc010vib.1_Intron	NM_024598	NP_078874	Q9BQ65	CP057_HUMAN	hypothetical protein LOC79650												0						GAAAACCAGGTGGGTCCTCCC	0.378000												
CSNK2A2	1459	broad.mit.edu	37	16	58201605	58201605	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:58201605A>G	uc002enc.2	-	7	750	c.608T>C	c.(607-609)CTC>CCC	p.L203P		NM_001896	NP_001887	P19784	CSK22_HUMAN	casein kinase 2, alpha prime polypeptide	203	Protein kinase.				axon guidance|Wnt receptor signaling pathway	cytosol|nucleus	ATP binding|protein N-terminus binding|protein serine/threonine kinase activity			central_nervous_system(1)	1						GTCCACGAGGAGCTCTGGTCC	0.443000												
NFATC3	4775	broad.mit.edu	37	16	68156367	68156367	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:68156367C>T	uc002evo.1	+	2	791	c.581C>T	c.(580-582)TCA>TTA	p.S194L	NFATC3_uc010vkl.1_5'UTR|NFATC3_uc010vkm.1_5'UTR|NFATC3_uc010vkn.1_5'UTR|NFATC3_uc010vko.1_5'UTR|NFATC3_uc010vkp.1_5'UTR|NFATC3_uc010vkq.1_5'UTR|NFATC3_uc002evl.2_Intron|NFATC3_uc002evk.2_Missense_Mutation_p.S194L|NFATC3_uc002evm.1_Missense_Mutation_p.S194L|NFATC3_uc002evn.1_Missense_Mutation_p.S194L|NFATC3_uc010vkr.1_5'UTR|NFATC3_uc010vks.1_5'UTR|NFATC3_uc010vkt.1_5'UTR|NFATC3_uc010vku.1_5'UTR|NFATC3_uc010vkv.1_5'UTR|NFATC3_uc010vkw.1_5'UTR|NFATC3_uc010vkx.1_5'UTR|NFATC3_uc010vky.1_5'UTR|NFATC3_uc010vkz.1_5'UTR|NFATC3_uc010vla.1_5'UTR|NFATC3_uc010vlb.1_5'UTR|NFATC3_uc010vlc.1_5'UTR	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	194					inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		GATGTGGACTCAGAGTTGAAT	0.493000												
NFATC3	4775	broad.mit.edu	37	16	68225203	68225203	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:68225203T>G	uc002evo.1	+	9	2841	c.2631T>G	c.(2629-2631)CCT>CCG	p.P877P	NFATC3_uc010vkl.1_Silent_p.P398P|NFATC3_uc010vkm.1_Silent_p.P398P|NFATC3_uc010vkn.1_Silent_p.P398P|NFATC3_uc010vko.1_Silent_p.P398P|NFATC3_uc010vkp.1_Silent_p.P398P|NFATC3_uc010vkq.1_Silent_p.P398P|NFATC3_uc002evl.2_Silent_p.P398P|NFATC3_uc002evk.2_Silent_p.P877P|NFATC3_uc002evm.1_Silent_p.P877P|NFATC3_uc002evn.1_Silent_p.P877P|NFATC3_uc010vkr.1_Silent_p.P398P|NFATC3_uc010vks.1_Silent_p.P398P|NFATC3_uc010vkt.1_Silent_p.P398P|NFATC3_uc010vku.1_Silent_p.P398P|NFATC3_uc010vkv.1_Silent_p.P398P|NFATC3_uc010vkw.1_Silent_p.P398P|NFATC3_uc010vkx.1_Silent_p.P398P|NFATC3_uc010vky.1_Silent_p.P398P|NFATC3_uc010vkz.1_Silent_p.P398P|NFATC3_uc010vla.1_Silent_p.P398P|NFATC3_uc010vlb.1_Silent_p.P398P|NFATC3_uc010vlc.1_Silent_p.P398P	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	877					inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		ATACCCTGCCTCATCTGCAAT	0.443000												
HYDIN	54768	broad.mit.edu	37	16	71008176	71008176	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:71008176T>G	uc002ezr.2	-	33	5062	c.4934A>C	c.(4933-4935)AAG>ACG	p.K1645T		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1646										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGGTAGATTCTTTACACGATC	0.418000												
FTSJD1	55783	broad.mit.edu	37	16	71317997	71317997	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:71317997A>G	uc010cga.2	-	3	2233	c.1827T>C	c.(1825-1827)ACT>ACC	p.T609T	FTSJD1_uc002ezy.3_Silent_p.T609T|FTSJD1_uc002ezz.3_Silent_p.T609T	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	609						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						AACAGCTAAAAGTTGTGAGTT	0.418000												
TAT	6898	broad.mit.edu	37	16	71610309	71610309	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:71610309A>G	uc002fap.2	-	2	109	c.10T>C	c.(10-12)TAC>CAC	p.Y4H	TAT_uc002faq.2_Missense_Mutation_p.Y4H|TAT_uc002far.2_Missense_Mutation_p.Y4H	NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	4					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	TGAATCATGTATGGGTCCATC	0.507000												
LDHD	197257	broad.mit.edu	37	16	75147704	75147704	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:75147704C>T	uc002fdm.2	-	7	1010	c.963G>A	c.(961-963)GCG>GCA	p.A321A	LDHD_uc002fdn.2_Silent_p.A298A	NM_153486	NP_705690	Q86WU2	LDHD_HUMAN	D-lactate dehydrogenase isoform 1 precursor	321							D-lactate dehydrogenase (cytochrome) activity|flavin adenine dinucleotide binding|protein binding				0						AGAGTGTGGGCGCCACTAAGC	0.607000												
KARS	3735	broad.mit.edu	37	16	75664405	75664405	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:75664405A>C	uc002feq.2	-	11	1388	c.1340T>G	c.(1339-1341)CTT>CGT	p.L447R	KARS_uc002fer.2_Missense_Mutation_p.L475R|KARS_uc002fes.2_Missense_Mutation_p.L291R	NM_005548	NP_005539	Q15046	SYK_HUMAN	lysyl-tRNA synthetase isoform 2	447					interspecies interaction between organisms|lysyl-tRNA aminoacylation|tRNA processing	cytosol|extracellular region|mitochondrial matrix|nucleus|plasma membrane|soluble fraction	ATP binding|lysine-tRNA ligase activity|metal ion binding|tRNA binding			ovary(2)	2					L-Lysine(DB00123)	CTCCCCAACAAGCTTAATGAG	0.423000												
CNTNAP4	85445	broad.mit.edu	37	16	76486611	76486611	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:76486611A>T	uc002feu.1	+	10	1663	c.1278A>T	c.(1276-1278)GGA>GGT	p.G426G	CNTNAP4_uc002fev.1_Silent_p.G290G|CNTNAP4_uc010chb.1_Silent_p.G353G|CNTNAP4_uc002fex.1_Silent_p.G429G|CNTNAP4_uc002few.2_Silent_p.G401G	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	426	Extracellular (Potential).|Laminin G-like 2.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TGAGTGATGGAAAACTTAAGT	0.433000												
PLCG2	5336	broad.mit.edu	37	16	81953163	81953163	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:81953163T>C	uc002fgt.2	+	20	2281	c.2129T>C	c.(2128-2130)TTT>TCT	p.F710S	PLCG2_uc010chg.1_Missense_Mutation_p.F710S	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	710	SH2 2.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						TCCGCCTATTTTGAGAGTCTG	0.577000												
SDR42E1	93517	broad.mit.edu	37	16	82033269	82033269	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:82033269T>G	uc002fgu.2	-	3	757	c.629A>C	c.(628-630)AAG>ACG	p.K210T		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	210					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GTAGACAAACTTGAACAGACC	0.542000												
ZCCHC14	23174	broad.mit.edu	37	16	87446364	87446364	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:87446364T>C	uc002fjz.1	-	12	1579	c.1552A>G	c.(1552-1554)AGA>GGA	p.R518G	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_Missense_Mutation_p.R294G	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	518					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		GCGCTCCCTCTTTCCGGCTTG	0.547000												
SMYD4	114826	broad.mit.edu	37	17	1704257	1704257	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:1704257T>A	uc002ftm.3	-	5	599	c.431A>T	c.(430-432)AAG>ATG	p.K144M	SMYD4_uc002ftn.1_Translation_Start_Site	NM_052928	NP_443160	Q8IYR2	SMYD4_HUMAN	SET and MYND domain containing 4	144							zinc ion binding			skin(3)|kidney(2)	5						TAACATAATCTTGGGTTGCAA	0.473000												
SPATA22	84690	broad.mit.edu	37	17	3352328	3352328	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:3352328T>A	uc002fvm.2	-	6	682	c.445A>T	c.(445-447)AGT>TGT	p.S149C	SPATA22_uc010vrg.1_Missense_Mutation_p.S133C|SPATA22_uc010vrf.1_Missense_Mutation_p.S149C|SPATA22_uc002fvn.2_Missense_Mutation_p.S149C|SPATA22_uc002fvo.2_Missense_Mutation_p.S149C|SPATA22_uc002fvp.2_Missense_Mutation_p.S149C|SPATA22_uc010ckf.2_Missense_Mutation_p.S106C	NM_032598	NP_115987	Q8NHS9	SPT22_HUMAN	spermatogenesis associated 22	149											0						GCTCCCGAACTCACTGGACAA	0.353000												
P2RX5	5026	broad.mit.edu	37	17	3593927	3593927	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:3593927G>A	uc002fwi.2	-	4	692	c.408C>T	c.(406-408)CAC>CAT	p.H136H	P2RX5_uc002fwd.2_RNA|P2RX5_uc002fwh.1_Silent_p.H136H|P2RX5_uc010vrx.1_Silent_p.H76H|P2RX5_uc002fwj.2_Silent_p.H112H|P2RX5_uc002fwk.2_Silent_p.H136H|P2RX5_uc002fwl.2_Silent_p.H112H|P2RX5_uc002fwm.1_Silent_p.H136H	NM_002561	NP_002552	Q93086	P2RX5_HUMAN	purinergic receptor P2X5 isoform A	136	Extracellular (Potential).				nervous system development|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						CTTCCCCAGCGTGGCAGTCGC	0.647000												
ANKFY1	51479	broad.mit.edu	37	17	4074022	4074022	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:4074022C>T	uc002fxq.1	-	23	3311	c.3273G>A	c.(3271-3273)CTG>CTA	p.L1091L	ANKFY1_uc002fxn.2_Silent_p.L1133L|ANKFY1_uc002fxo.2_Silent_p.L1092L|ANKFY1_uc002fxp.2_Silent_p.L1090L|ANKFY1_uc010ckp.2_Silent_p.L1033L	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	1091						endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						GCAGTCGGAACAGGAGCTGCT	0.567000												
KIF1C	10749	broad.mit.edu	37	17	4925494	4925494	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:4925494C>T	uc002gan.1	+	22	2444	c.2118C>T	c.(2116-2118)ACC>ACT	p.T706T		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	706					microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						CGGTCCAGACCATTGTCAAAC	0.637000												
USP6	9098	broad.mit.edu	37	17	5044777	5044777	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:5044777A>C	uc002gau.1	+	23	3786	c.1556A>C	c.(1555-1557)AAA>ACA	p.K519T	USP6_uc002gav.1_Missense_Mutation_p.K519T|USP6_uc010ckz.1_Missense_Mutation_p.K202T	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	519					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						AATAGTAGTAAAATAGATAGA	0.294000			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts							
KIAA0753	9851	broad.mit.edu	37	17	6531699	6531699	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:6531699T>G	uc002gde.3	-	3	815	c.456A>C	c.(454-456)CAA>CAC	p.Q152H	KIAA0753_uc010clo.2_5'UTR|KIAA0753_uc010vte.1_5'UTR	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	152						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		GACAGGCTGCTTGACTCTTTG	0.458000												
TEKT1	83659	broad.mit.edu	37	17	6716238	6716238	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:6716238T>C	uc002gdt.2	-	6	874	c.764A>G	c.(763-765)AAG>AGG	p.K255R	TEKT1_uc010vth.1_Missense_Mutation_p.K109R	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	255					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				ATCACACTGCTTGCGCAGATC	0.542000												
TNK1	8711	broad.mit.edu	37	17	7291747	7291747	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:7291747A>G	uc002ggi.3	+	11	1675	c.1515A>G	c.(1513-1515)TCA>TCG	p.S505S	TNK1_uc002ggj.3_Silent_p.S500S|TNK1_uc010cmf.2_RNA|TNK1_uc002ggk.3_Intron	NM_003985	NP_003976	Q13470	TNK1_HUMAN	tyrosine kinase, non-receptor, 1	505					protein autophosphorylation	membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(122;0.157)				GTCTGGAGTCAGTTCTGTCCC	0.448000												
DNAH2	146754	broad.mit.edu	37	17	7696052	7696052	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:7696052A>C	uc002giu.1	+	46	7237	c.7223A>C	c.(7222-7224)AAC>ACC	p.N2408T		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2408	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TTGGTGGCCAACCAGAATCCC	0.622000												
NTN1	9423	broad.mit.edu	37	17	8926112	8926112	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:8926112A>C	uc002glw.3	+	2	529	c.422A>C	c.(421-423)AAG>ACG	p.K141T		NM_004822	NP_004813	O95631	NET1_HUMAN	netrin 1 precursor	141	Laminin N-terminal.				apoptosis|axon guidance		protein binding				0						CTCGGCAAGAAGTTCGAAGTG	0.612000												
WDR16	146845	broad.mit.edu	37	17	9542013	9542013	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:9542013C>T	uc002gly.2	+	12	1629	c.1560C>T	c.(1558-1560)AGC>AGT	p.S520S	WDR16_uc002glz.2_Silent_p.S452S|WDR16_uc010coc.2_Silent_p.S530S	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	520	WD 9.					cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						TCATCACCAGCGGAACAGACA	0.398000												
MYH8	4626	broad.mit.edu	37	17	10300237	10300237	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:10300237A>C	uc002gmm.2	-	31	4340	c.4245T>G	c.(4243-4245)GCT>GCG	p.A1415A	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1415	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TCTCAAGGGAAGCACATTTGG	0.507000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling			
MYH1	4619	broad.mit.edu	37	17	10415458	10415458	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:10415458T>G	uc002gmo.2	-	13	1293	c.1199A>C	c.(1198-1200)AAA>ACA	p.K400T	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	400	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GCAGAGGGCTTTGAGCAGATC	0.468000												
MYH2	4620	broad.mit.edu	37	17	10428180	10428180	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:10428180T>G	uc010coi.2	-	34	4993	c.4865A>C	c.(4864-4866)AAG>ACG	p.K1622T	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.K1622T|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1622	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTCCATCTTCTTCTTGAGCCT	0.507000												
MYH2	4620	broad.mit.edu	37	17	10428375	10428375	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:10428375A>C	uc010coi.2	-	34	4798	c.4670T>G	c.(4669-4671)CTT>CGT	p.L1557R	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.L1557R|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1557	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TTCATGTTCAAGAGATGCCTT	0.388000												
DNAH9	1770	broad.mit.edu	37	17	11572875	11572875	+	Missense_Mutation	SNP	A	A	C	rs149721373		TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:11572875A>C	uc002gne.2	+	17	3185	c.3117A>C	c.(3115-3117)GAA>GAC	p.E1039D	DNAH9_uc010coo.2_Missense_Mutation_p.E333D	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1039	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CTCCGGAAGAAATTGAAGACC	0.498000												
NCOR1	9611	broad.mit.edu	37	17	15965203	15965203	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:15965203A>T	uc002gpo.2	-	37	5633	c.5393T>A	c.(5392-5394)CTG>CAG	p.L1798Q	NCOR1_uc002gpn.2_Missense_Mutation_p.L1814Q|NCOR1_uc002gpm.2_Missense_Mutation_p.L318Q|NCOR1_uc010vwb.1_Missense_Mutation_p.L382Q|NCOR1_uc010coy.2_Missense_Mutation_p.L706Q|NCOR1_uc010vwc.1_Missense_Mutation_p.L608Q	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1798	Interaction with ETO.|Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		CCCAGCAGGCAGTGGCCTGTA	0.532000												
CCDC144A	9720	broad.mit.edu	37	17	16610808	16610808	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:16610808A>T	uc002gqk.1	+	4	766	c.690A>T	c.(688-690)TCA>TCT	p.S230S	CCDC144A_uc002gql.1_5'UTR	NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	230											0						AGCTGACATCAGAGGAAGAGC	0.328000												
CCDC144A	9720	broad.mit.edu	37	17	16612142	16612142	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:16612142T>G	uc002gqk.1	+	5	847	c.771T>G	c.(769-771)GAT>GAG	p.D257E	CCDC144A_uc002gql.1_Intron|LOC162632_uc010cpj.1_5'Flank	NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	257											0						TGGCTAAGGATTGCGATAGAG	0.383000												
MYO15A	51168	broad.mit.edu	37	17	18044990	18044990	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:18044990A>G	uc010vxh.1	+	22	5893	c.5555A>G	c.(5554-5556)AAG>AGG	p.K1852R		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1852	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GTGGCCCTCAAGCATGACCTG	0.567000											OREG0024223	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
MYO15A	51168	broad.mit.edu	37	17	18054711	18054711	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:18054711T>G	uc010vxh.1	+	39	7995	c.7657T>G	c.(7657-7659)TCA>GCA	p.S2553A	MYO15A_uc010vxi.1_5'Flank|MYO15A_uc010vxj.1_5'Flank|MYO15A_uc010vxk.1_5'Flank	NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	2553	Tail.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GCCCACAGCTTCACCCTCCCC	0.622000												
MFAP4	4239	broad.mit.edu	37	17	19288525	19288525	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:19288525T>A	uc002gvt.2	-	5	432	c.407A>T	c.(406-408)GAG>GTG	p.E136V	MFAP4_uc002gvr.2_RNA|MFAP4_uc002gvs.2_Missense_Mutation_p.E160V	NM_002404	NP_002395	P55083	MFAP4_HUMAN	microfibrillar-associated protein 4 precursor	136	Fibrinogen C-terminal.				cell adhesion|signal transduction	microfibril	receptor binding				0	all_cancers(12;2.87e-05)|all_epithelial(12;0.00114)|Hepatocellular(7;0.00345)|Breast(13;0.206)					CGTGTTGTTCTCAAAGTCCTC	0.572000												
ATAD5	79915	broad.mit.edu	37	17	29185224	29185224	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:29185224T>A	uc002hfs.1	+	9	3185	c.2839T>A	c.(2839-2841)TTG>ATG	p.L947M	ATAD5_uc002hft.1_Missense_Mutation_p.L844M	NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	947					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				AAGAAATCTTTTGCTTGAGGA	0.318000												
CCL1	6346	broad.mit.edu	37	17	32690125	32690125	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:32690125T>G	uc002hid.1	-	1	128	c.56A>C	c.(55-57)GAA>GCA	p.E19A		NM_002981	NP_002972	P22362	CCL1_HUMAN	small inducible cytokine A1 precursor	19					cellular calcium ion homeostasis|chemotaxis|immune response|signal transduction|viral reproduction	extracellular space	chemokine activity				0		Ovarian(249;0.0443)|Breast(31;0.133)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)|BRCA - Breast invasive adenocarcinoma(366;0.155)		GTCCACATCTTCCGGCCACAT	0.572000												
LIG3	3980	broad.mit.edu	37	17	33310344	33310344	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:33310344A>C	uc002hik.1	+	2	428	c.320A>C	c.(319-321)AAA>ACA	p.K107T	LIG3_uc002hii.2_Missense_Mutation_p.K107T|LIG3_uc002hij.2_Missense_Mutation_p.K107T|LIG3_uc010cth.1_Missense_Mutation_p.K116T	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	107	PARP-type.				base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	GGCTGCAAAAAATGCAAGGAA	0.527000								Other_BER_factors				
LYZL6	57151	broad.mit.edu	37	17	34264911	34264911	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:34264911A>G	uc002hkj.1	-	2	299	c.149T>C	c.(148-150)CTG>CCG	p.L50P	LYZL6_uc002hkk.1_Missense_Mutation_p.L50P	NM_020426	NP_065159	O75951	LYZL6_HUMAN	lysozyme-like 6 precursor	50					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CACAAAAGCCAGGCACAGCCC	0.473000												
ACACA	31	broad.mit.edu	37	17	35536243	35536243	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:35536243T>A	uc002hnm.2	-	41	5117	c.4926A>T	c.(4924-4926)CAA>CAT	p.Q1642H	ACACA_uc002hnk.2_Missense_Mutation_p.Q1564H|ACACA_uc002hnl.2_Missense_Mutation_p.Q1584H|ACACA_uc002hnn.2_Missense_Mutation_p.Q1642H|ACACA_uc002hno.2_Missense_Mutation_p.Q1679H|ACACA_uc010cuy.2_Intron	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1642					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	CCAGCTGACCTTGATCATCCA	0.488000												
GPR179	440435	broad.mit.edu	37	17	36486628	36486628	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:36486628A>C	uc002hpz.2	-	11	2845	c.2824T>G	c.(2824-2826)TTG>GTG	p.L942V		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	942	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GACAGGGCCAAGATGGGGGTA	0.527000												
KRT25	147183	broad.mit.edu	37	17	38911503	38911503	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:38911503A>G	uc002hve.2	-	1	82	c.21T>C	c.(19-21)AGT>AGC	p.S7S		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	7	Head.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				TCCTGGATGCACTGGAAAGTC	0.498000												
KRT38	8687	broad.mit.edu	37	17	39593675	39593675	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:39593675T>G	uc002hwq.1	-	7	1783	c.1360A>C	c.(1360-1362)AGC>CGC	p.S454R		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	454	Tail.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				CAGAATCGGCTTCCGGTGGTG	0.587000												
BECN1	8678	broad.mit.edu	37	17	40963766	40963766	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:40963766T>C	uc002ibo.3	-	11	1226	c.1091A>G	c.(1090-1092)AAG>AGG	p.K364R	BECN1_uc010whb.1_Missense_Mutation_p.K277R|BECN1_uc010whc.1_Intron|BECN1_uc002ibn.2_Missense_Mutation_p.K364R	NM_003766	NP_003757	Q14457	BECN1_HUMAN	beclin 1	364					anti-apoptosis|cell cycle|cellular defense response|cytokinesis|response to virus	membrane	protein binding			ovary(1)	1		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0745)		ATGGTCAAACTTGTTGTCCCA	0.498000												
BRCA1	672	broad.mit.edu	37	17	41228549	41228549	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:41228549A>G	uc002icq.2	-	13	4672	c.4440T>C	c.(4438-4440)TCT>TCC	p.S1480S	BRCA1_uc010whp.1_Silent_p.S329S|BRCA1_uc010whl.1_Silent_p.S376S|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Silent_p.S1409S|BRCA1_uc002icu.2_Silent_p.S376S|BRCA1_uc010cyx.2_Silent_p.S1433S|BRCA1_uc002ict.2_Silent_p.S1501S|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Silent_p.S209S|BRCA1_uc002idc.1_Silent_p.S376S|BRCA1_uc010whr.1_Silent_p.S330S	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	1480					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		AACTATCTGCAGACACCTCAA	0.358000			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)		
BRCA1	672	broad.mit.edu	37	17	41243775	41243775	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:41243775T>C	uc002icq.2	-	10	4005	c.3773A>G	c.(3772-3774)GAG>GGG	p.E1258G	BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.E1187G|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Missense_Mutation_p.E1211G|BRCA1_uc002ict.2_Missense_Mutation_p.E1258G|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Missense_Mutation_p.E1258G|BRCA1_uc002ide.1_Missense_Mutation_p.E1089G|BRCA1_uc010cyy.1_Missense_Mutation_p.E1258G|BRCA1_uc010whs.1_Missense_Mutation_p.E1258G|BRCA1_uc010cyz.2_Missense_Mutation_p.E1211G|BRCA1_uc010cza.2_Missense_Mutation_p.E1232G|BRCA1_uc010wht.1_Missense_Mutation_p.E962G	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	1258					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TAATAAATTCTCCTCTGTGTT	0.383000			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)		
GPATCH8	23131	broad.mit.edu	37	17	42477192	42477192	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:42477192T>C	uc002igw.1	-	8	2317	c.2253A>G	c.(2251-2253)CAA>CAG	p.Q751Q	GPATCH8_uc002igv.1_Silent_p.Q673Q|GPATCH8_uc010wiz.1_Silent_p.Q673Q	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	751						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		GGGAGTCATCTTGAGCTCTCC	0.582000												
FZD2	2535	broad.mit.edu	37	17	42636483	42636483	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:42636483T>A	uc002igx.1	+	1	1559	c.1427T>A	c.(1426-1428)GTC>GAC	p.V476D		NM_001466	NP_001457	Q14332	FZD2_HUMAN	frizzled 2 precursor	476	Helical; Name=6; (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|positive regulation of cGMP metabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		GCCACCATCGTCATCGCTTGC	0.637000												
MAPT	4137	broad.mit.edu	37	17	44067437	44067437	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:44067437T>G	uc002ijr.3	+	8	1696	c.1376T>G	c.(1375-1377)CTC>CGC	p.L459R	MAPT_uc010dau.2_Missense_Mutation_p.L459R|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	459					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				GAGATGAAACTCAAGGTAAGG	0.433000												
WNT9B	7484	broad.mit.edu	37	17	44952679	44952679	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:44952679A>T	uc002ikw.1	+	3	584	c.547A>T	c.(547-549)AAC>TAC	p.N183Y	WNT9B_uc002ikx.1_Missense_Mutation_p.N183Y	NM_003396	NP_003387	O14905	WNT9B_HUMAN	wingless-type MMTV integration site family,	183					anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|collecting duct development|cornea development in camera-type eye|endoderm development|establishment of planar polarity involved in nephron morphogenesis|kidney rudiment formation|male genitalia development|mesonephric duct formation|metanephric tubule development|neuron differentiation|palate development|regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|uterus morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway|Wnt receptor signaling pathway, planar cell polarity pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			CAAGAGAGGAAACAAGGACCT	0.632000												
KIF2B	84643	broad.mit.edu	37	17	51901856	51901856	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:51901856A>C	uc002iua.2	+	1	1618	c.1462A>C	c.(1462-1464)AAC>CAC	p.N488H	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	488					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						TTTGGGTCAGAACAAGCCTCA	0.512000												
EPX	8288	broad.mit.edu	37	17	56280628	56280628	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:56280628T>G	uc002ivq.2	+	11	1981	c.1895T>G	c.(1894-1896)CTT>CGT	p.L632R		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	632					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						GTGGGGCCTCTTCTGGCTTGT	0.522000												
LPO	4025	broad.mit.edu	37	17	56345352	56345352	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:56345352T>G	uc002ivt.2	+	13	2452	c.2136T>G	c.(2134-2136)AAT>AAG	p.N712K	LPO_uc010wns.1_Missense_Mutation_p.N653K|LPO_uc010dcp.2_Missense_Mutation_p.N629K|LPO_uc010dcq.2_Missense_Mutation_p.N383K|LPO_uc010dcr.2_Missense_Mutation_p.N275K	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	712					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						CAGTGAAGAATTAGGGGCCCG	0.567000												
PRR11	55771	broad.mit.edu	37	17	57274918	57274918	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:57274918A>T	uc002ixf.1	+	8	950	c.871A>T	c.(871-873)AGT>TGT	p.S291C	PRR11_uc002ixg.1_RNA	NM_018304	NP_060774	Q96HE9	PRR11_HUMAN	proline rich 11	291										ovary(2)	2	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					TCCTGGAAAAAGTCAGATGGA	0.244000												
C17orf71	55181	broad.mit.edu	37	17	57288500	57288500	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:57288500A>T	uc002ixi.2	+	1	1130	c.1088A>T	c.(1087-1089)GAC>GTC	p.D363V		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	363					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					ACTGTGAAGGACCCGGAATCT	0.537000												
TANC2	26115	broad.mit.edu	37	17	61345122	61345122	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:61345122C>T	uc002jal.3	+	7	848	c.825C>T	c.(823-825)GCC>GCT	p.A275A	TANC2_uc010wpe.1_Silent_p.A185A	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	275							binding			ovary(2)	2						CCAGCTCTGCCCACTTGGAAG	0.453000												
ACE	1636	broad.mit.edu	37	17	61571295	61571295	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:61571295A>C	uc002jau.1	+	21	3171	c.3149A>C	c.(3148-3150)AAC>ACC	p.N1050T	ACE_uc002jav.1_Missense_Mutation_p.N476T|ACE_uc010ddv.1_Missense_Mutation_p.N277T|ACE_uc010wpj.1_Missense_Mutation_p.N476T|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.N296T	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1050	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	CATGACATCAACTTTCTGATG	0.572000												
KCNH6	81033	broad.mit.edu	37	17	61607903	61607903	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:61607903G>A	uc002jay.2	+	4	755	c.675G>A	c.(673-675)CAG>CAA	p.Q225Q	KCNH6_uc002jax.1_Silent_p.Q225Q|KCNH6_uc010wpl.1_Silent_p.Q102Q|KCNH6_uc010wpm.1_Silent_p.Q225Q|KCNH6_uc002jaz.1_Silent_p.Q225Q	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	225	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	AGGTCACCCAGGTGCGGGCCT	0.642000												
KCNH6	81033	broad.mit.edu	37	17	61613064	61613064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:61613064G>A	uc002jay.2	+	6	1216	c.1136G>A	c.(1135-1137)CGG>CAG	p.R379Q	KCNH6_uc002jax.1_Missense_Mutation_p.R379Q|KCNH6_uc010wpl.1_Missense_Mutation_p.R256Q|KCNH6_uc010wpm.1_Missense_Mutation_p.R379Q|KCNH6_uc002jaz.1_Missense_Mutation_p.R379Q	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	379	Helical; Voltage-sensor; Name=Segment S4; (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	AAGACAGCGCGGCTGCTGCGG	0.617000												
FTSJ3	117246	broad.mit.edu	37	17	61897227	61897227	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:61897227T>G	uc002jbz.2	-	20	2557	c.2479A>C	c.(2479-2481)AGG>CGG	p.R827R	FTSJ3_uc002jca.2_Silent_p.R827R	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	827					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						TTCTTCATCCTTGAGTCCACC	0.527000												
LRRC37A3	374819	broad.mit.edu	37	17	62893362	62893362	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:62893362T>C	uc002jey.2	-	3	545	c.14A>G	c.(13-15)CAG>CGG	p.Q5R	LRRC37A3_uc010wqg.1_Intron|LRRC37A3_uc010wqf.1_Intron	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	5						integral to membrane					0						TGCCGGGCACTGAGCGGAAGT	0.562000												
CCDC46	201134	broad.mit.edu	37	17	63957711	63957711	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:63957711T>A	uc002jfl.2	-	18	1961	c.1742A>T	c.(1741-1743)AAA>ATA	p.K581I	CCDC46_uc010deo.2_Missense_Mutation_p.K323I|CCDC46_uc002jfm.2_Missense_Mutation_p.K581I|CCDC46_uc010dep.2_Missense_Mutation_p.K539I	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	581	Potential.					centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			CTGCTCCTCTTTTTCCCTAGA	0.443000												
COG1	9382	broad.mit.edu	37	17	71197502	71197502	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:71197502T>G	uc002jjg.2	+	7	1572	c.1536T>G	c.(1534-1536)CCT>CCG	p.P512P	COG1_uc002jjh.2_Silent_p.P512P|COG1_uc002jjf.1_Silent_p.P512P	NM_018714	NP_061184	Q8WTW3	COG1_HUMAN	component of oligomeric golgi complex 1	512					Golgi organization|intra-Golgi vesicle-mediated transport|protein transport	Golgi membrane|Golgi transport complex	protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.197)			CCATCAGCCCTTGTGTACAGA	0.547000												
SDK2	54549	broad.mit.edu	37	17	71398177	71398177	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:71398177T>G	uc010dfm.2	-	19	2588	c.2588A>C	c.(2587-2589)AAG>ACG	p.K863T	SDK2_uc002jjt.3_Missense_Mutation_p.K22T|SDK2_uc010dfn.2_Missense_Mutation_p.K542T	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	863	Fibronectin type-III 3.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						CTCGGTGAACTTCTTCAGGCC	0.617000												
CD300E	342510	broad.mit.edu	37	17	72613331	72613331	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:72613331T>G	uc002jlb.1	-	2	355	c.314A>C	c.(313-315)AAA>ACA	p.K105T		NM_181449	NP_852114	Q496F6	CLM2_HUMAN	CD300e molecule precursor	105	Ig-like V-type.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						TGTCTGAATTTTGCACCAGTA	0.547000												
CYTH1	9267	broad.mit.edu	37	17	76698666	76698666	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:76698666T>G	uc002jvw.2	-	4	262	c.191A>C	c.(190-192)AAA>ACA	p.K64T	CYTH1_uc010wtw.1_Missense_Mutation_p.K5T|CYTH1_uc010wtx.1_Missense_Mutation_p.K5T	NM_017456	NP_059430	Q15438	CYH1_HUMAN	cytohesin 1 isoform 2	64	Potential.				regulation of ARF protein signal transduction|regulation of cell adhesion|vesicle-mediated transport	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						GGCTACCTGTTTGTTCCTCTG	0.388000												
BAIAP2	10458	broad.mit.edu	37	17	79073837	79073837	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:79073837A>G	uc002jzg.2	+	7	707	c.599A>G	c.(598-600)AAG>AGG	p.K200R	BAIAP2_uc002jyz.3_Missense_Mutation_p.K200R|BAIAP2_uc002jza.2_Missense_Mutation_p.K200R|BAIAP2_uc002jzc.2_Missense_Mutation_p.K200R|BAIAP2_uc002jzb.2_5'UTR|BAIAP2_uc002jzd.2_Missense_Mutation_p.K200R|BAIAP2_uc002jzf.2_Missense_Mutation_p.K200R|BAIAP2_uc002jze.2_Missense_Mutation_p.K233R|BAIAP2_uc010wuh.1_Missense_Mutation_p.K122R|BAIAP2_uc002jzh.2_Missense_Mutation_p.K201R|BAIAP2_uc010wui.1_Missense_Mutation_p.K63R	NM_017451	NP_059345	Q9UQB8	BAIP2_HUMAN	BAI1-associated protein 2 isoform 2	200	IMD.				axonogenesis|filopodium assembly|insulin receptor signaling pathway|regulation of actin cytoskeleton organization|response to bacterium	cell junction|cytoskeleton|cytosol|filopodium|nucleus|ruffle	cytoskeletal adaptor activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding				0	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			CTGGTGGAGAAGCAGTGCGCC	0.647000												
ZNF750	79755	broad.mit.edu	37	17	80788538	80788538	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr17:80788538A>C	uc002kga.2	-	3	1963	c.1652T>G	c.(1651-1653)CTC>CGC	p.L551R	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	551						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CGAGAGATTGAGTGGAAGGTC	0.602000												
NDC80	10403	broad.mit.edu	37	18	2577822	2577822	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:2577822T>G	uc002kli.2	+	4	439	c.257T>G	c.(256-258)CTT>CGT	p.L86R		NM_006101	NP_006092	O14777	NDC80_HUMAN	kinetochore associated 2	86	Interaction with the N-terminus of CDCA1.|Nuclear localization.				attachment of spindle microtubules to kinetochore|cell division|establishment of mitotic spindle orientation|mitotic prometaphase|mitotic sister chromatid segregation|mitotic spindle organization|phosphatidylinositol-mediated signaling	condensed nuclear chromosome outer kinetochore|cytosol|Ndc80 complex	protein binding			ovary(1)	1						CCGAGACCACTTAATGACAAA	0.363000												
LAMA1	284217	broad.mit.edu	37	18	6978368	6978368	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:6978368T>C	uc002knm.2	-	43	6111	c.6017A>G	c.(6016-6018)GAC>GGC	p.D2006G	LAMA1_uc010wzj.1_Missense_Mutation_p.D1482G	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2006	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGCTCCCTTGTCTCTTATACC	0.473000												
LRRC30	339291	broad.mit.edu	37	18	7231432	7231432	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:7231432T>G	uc010wzk.1	+	1	296	c.296T>G	c.(295-297)CTG>CGG	p.L99R		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	99	LRR 2.									ovary(1)|liver(1)	2						ATCGTGGTCCTGAACTTGTGC	0.572000												
KIAA0802	23255	broad.mit.edu	37	18	8825346	8825346	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:8825346T>A	uc002knr.2	+	15	3980	c.3838T>A	c.(3838-3840)TTG>ATG	p.L1280M	KIAA0802_uc002knq.2_Missense_Mutation_p.L1239M|KIAA0802_uc002kns.2_Missense_Mutation_p.L620M	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1590											0						GTCCAAGAACTTGAGTGATGA	0.607000												
RALBP1	10928	broad.mit.edu	37	18	9535697	9535697	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:9535697T>G	uc002kob.2	+	10	1953	c.1730T>G	c.(1729-1731)ATT>AGT	p.I577S	RALBP1_uc002koc.2_Missense_Mutation_p.I577S	NM_006788	NP_006779	Q15311	RBP1_HUMAN	ralA binding protein 1	577					chemotaxis|positive regulation of Cdc42 GTPase activity|small GTPase mediated signal transduction|transport	cytosol|membrane	ATPase activity, coupled to movement of substances|Rac GTPase activator activity|Rac GTPase binding|Ral GTPase binding			central_nervous_system(1)	1						AATCAAGCAATTCATGAGGAG	0.557000												
PTPN2	5771	broad.mit.edu	37	18	12817314	12817314	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:12817314A>C	uc002krp.2	-	6	740	c.546T>G	c.(544-546)GAT>GAG	p.D182E	PTPN2_uc002krl.2_Missense_Mutation_p.D182E|PTPN2_uc002krn.2_Missense_Mutation_p.D205E|PTPN2_uc002kro.2_Missense_Mutation_p.D182E|PTPN2_uc002krm.2_Missense_Mutation_p.D182E	NM_002828	NP_002819	P17706	PTN2_HUMAN	protein tyrosine phosphatase, non-receptor type	182	Tyrosine-protein phosphatase.	Substrate (By similarity).			interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway	endoplasmic reticulum|nucleoplasm	protein binding			skin(2)	2		Lung NSC(161;8.94e-06)				GGACTCCAAAATCTGGCCAGG	0.398000												
RBBP8	5932	broad.mit.edu	37	18	20573460	20573460	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:20573460A>T	uc002ktw.2	+	11	2001	c.1670A>T	c.(1669-1671)GAA>GTA	p.E557V	RBBP8_uc002kty.2_Missense_Mutation_p.E557V|RBBP8_uc002ktz.2_Missense_Mutation_p.E557V|RBBP8_uc002kua.2_Missense_Mutation_p.E557V|RBBP8_uc010xap.1_5'Flank|RBBP8_uc002ktx.1_Missense_Mutation_p.E557V	NM_002894	NP_002885	Q99708	COM1_HUMAN	retinoblastoma binding protein 8 isoform a	557					cell cycle checkpoint|DNA double-strand break processing involved in repair via single-strand annealing|meiosis|regulation of transcription from RNA polymerase II promoter	nucleus	damaged DNA binding|protein binding|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)|lung(1)|skin(1)	3	all_cancers(21;4.34e-05)|all_epithelial(16;8.3e-07)|Lung NSC(20;0.0107)|Colorectal(14;0.0202)|all_lung(20;0.0291)|Ovarian(20;0.19)		OV - Ovarian serous cystadenocarcinoma(1;0.00196)			TGTTCACAGGAATGCATCATC	0.448000								Direct_reversal_of_damage|Homologous_recombination				
MAPRE2	10982	broad.mit.edu	37	18	32706943	32706943	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:32706943A>T	uc002kyg.2	+	5	822	c.642A>T	c.(640-642)CCA>CCT	p.P214P	MAPRE2_uc010xcb.1_Silent_p.P171P|MAPRE2_uc010xcc.1_Silent_p.P202P|MAPRE2_uc002kyf.2_Silent_p.P214P|MAPRE2_uc002kyh.2_Silent_p.P161P|MAPRE2_uc010xcd.1_Silent_p.P171P	NM_014268	NP_055083	Q15555	MARE2_HUMAN	microtubule-associated protein, RP/EB family,	214	DCTN1-binding.				cell division|cell proliferation|mitosis|signal transduction	cytoplasm|microtubule	microtubule binding			ovary(1)	1						CAGCTAAACCAGGATCCACAC	0.403000												
KIAA1328	57536	broad.mit.edu	37	18	34740221	34740221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:34740221C>T	uc002kzz.2	+	8	1313	c.1291C>T	c.(1291-1293)CAC>TAC	p.H431Y	KIAA1328_uc002lab.2_Missense_Mutation_p.H183Y|KIAA1328_uc002lac.1_Missense_Mutation_p.H290Y|KIAA1328_uc010dnc.1_RNA	NM_020776	NP_065827	Q86T90	K1328_HUMAN	hypothetical protein LOC57536	431										central_nervous_system(1)	1				COAD - Colon adenocarcinoma(74;0.195)		TATTAAAAAGCACCAAGACCC	0.428000												
WDR7	23335	broad.mit.edu	37	18	54363663	54363663	+	Silent	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:54363663T>A	uc002lgk.1	+	12	1759	c.1548T>A	c.(1546-1548)ACT>ACA	p.T516T	WDR7_uc010dpk.1_Intron|WDR7_uc002lgl.1_Silent_p.T516T	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	516										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		GTGAGATTACTCAACTTCTAG	0.333000												
SEC11C	90701	broad.mit.edu	37	18	56825903	56825903	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:56825903A>C	uc002lht.2	+	6	621	c.565A>C	c.(565-567)AAA>CAA	p.K189Q		NM_033280	NP_150596	Q9BY50	SC11C_HUMAN	SEC11-like 3	189	Lumenal (Potential).				energy reserve metabolic process|regulation of insulin secretion|signal peptide processing	endoplasmic reticulum membrane|integral to membrane|microsome	serine-type peptidase activity				0		Colorectal(73;0.175)				TGTGTTACTAAAACGTGAATC	0.343000												
SERPINB4	6318	broad.mit.edu	37	18	61326731	61326731	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:61326731A>T	uc002ljg.2	-	3	279	c.253T>A	c.(253-255)TTT>ATT	p.F85I	SERPINB3_uc002lji.2_Missense_Mutation_p.F85I|SERPINB3_uc010dqa.2_Missense_Mutation_p.F85I|SERPINB3_uc010dqb.2_Missense_Mutation_p.F85I			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	85					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						AGCTTTTGAAACTGGTGATGA	0.368000												
SERPINB11	89778	broad.mit.edu	37	18	61377558	61377558	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:61377558T>G	uc002ljk.3	+	2	193	c.131T>G	c.(130-132)CTT>CGT	p.L44R	SERPINB11_uc010xes.1_5'UTR|SERPINB11_uc010dqd.2_5'UTR|SERPINB11_uc002ljj.3_5'UTR|SERPINB11_uc010dqe.2_5'UTR|SERPINB11_uc010dqf.2_Missense_Mutation_p.L44R	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	44					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				ATGGTCCTCCTTGGTGCCAGG	0.458000												
SERPINB2	5055	broad.mit.edu	37	18	61564434	61564434	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:61564434A>C	uc010xeu.1	+	5	731	c.398A>C	c.(397-399)AAG>ACG	p.K133T	SERPINB2_uc002ljo.2_Missense_Mutation_p.K133T|SERPINB2_uc010dqh.2_Missense_Mutation_p.K63T|SERPINB2_uc002ljp.1_5'UTR|SERPINB2_uc002ljq.1_5'UTR	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	133					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	TTTGGTGAGAAGTCTGCGAGC	0.418000												
SALL3	27164	broad.mit.edu	37	18	76754796	76754796	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr18:76754796C>T	uc002lmt.2	+	2	2805	c.2805C>T	c.(2803-2805)ACC>ACT	p.T935T	SALL3_uc010dra.2_Silent_p.T542T	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	935					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CGCTCAAGACCGAGAGGCCGG	0.547000												
LMNB2	84823	broad.mit.edu	37	19	2433832	2433832	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:2433832A>G	uc002lvy.2	-	8	1501	c.1414T>C	c.(1414-1416)TCG>CCG	p.S472P	LMNB2_uc002lwa.1_Missense_Mutation_p.S492P	NM_032737	NP_116126	Q03252	LMNB2_HUMAN	lamin B2	472	Tail.					nuclear inner membrane	structural molecule activity			large_intestine(1)|ovary(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCTTGTCCGAGTTGTTCTTG	0.652000												
SGTA	6449	broad.mit.edu	37	19	2767593	2767593	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:2767593C>T	uc002lwi.1	-	3	339	c.192G>A	c.(190-192)GCG>GCA	p.A64A		NM_003021	NP_003012	O43765	SGTA_HUMAN	small glutamine-rich tetratricopeptide	64					interspecies interaction between organisms	cytoplasm	protein binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGTGGCAGCCGCTTCAAATA	0.622000												
ZNF556	80032	broad.mit.edu	37	19	2877903	2877903	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:2877903A>C	uc002lwp.1	+	4	1034	c.947A>C	c.(946-948)AAG>ACG	p.K316T	ZNF556_uc002lwq.2_Missense_Mutation_p.K315T	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	316	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAACCCTATAAGTGTGGAAAA	0.522000												
PIP5K1C	23396	broad.mit.edu	37	19	3653457	3653457	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:3653457T>C	uc002lyj.1	-	7	809	c.752A>G	c.(751-753)AAG>AGG	p.K251R	PIP5K1C_uc010xhq.1_Missense_Mutation_p.K251R|PIP5K1C_uc010xhr.1_Missense_Mutation_p.K251R	NM_012398	NP_036530	O60331	PI51C_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	251	PIPK.				axon guidance	cytosol|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			stomach(2)|skin(2)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.95e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0026)|STAD - Stomach adenocarcinoma(1328;0.183)		GAGGTCGAACTTGAGGTGCAT	0.582000												
MPND	84954	broad.mit.edu	37	19	4345893	4345893	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:4345893A>C	uc002mae.2	+	3	513	c.446A>C	c.(445-447)AAG>ACG	p.K149T	MPND_uc010dtx.2_RNA|MPND_uc002mag.2_Missense_Mutation_p.K149T|MPND_uc002maf.2_Missense_Mutation_p.K149T|MPND_uc002mah.2_Missense_Mutation_p.K37T|MPND_uc002mai.2_Missense_Mutation_p.K37T	NM_032868	NP_116257	Q8N594	MPND_HUMAN	MPN domain containing isoform 1	149							peptidase activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCTCTGTCAAGTACAAAGGC	0.627000												
CHAF1A	10036	broad.mit.edu	37	19	4409730	4409730	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:4409730T>G	uc002mal.2	+	3	1034	c.934T>G	c.(934-936)TTC>GTC	p.F312V		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	312	Binds to CBX1 chromo shadow domain.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		TACCAGTCCCTTCCCCACCTC	0.622000								Chromatin_Structure				
VAV1	7409	broad.mit.edu	37	19	6772985	6772985	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:6772985A>C	uc002mfu.1	+	1	264	c.167A>C	c.(166-168)AAC>ACC	p.N56T	VAV1_uc010xjh.1_Missense_Mutation_p.N56T|VAV1_uc010dva.1_Missense_Mutation_p.N56T	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	56	Leu-rich.|CH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						CATGCCATCAACCTGCGTGAG	0.652000												
ARHGEF18	23370	broad.mit.edu	37	19	7509198	7509198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:7509198G>A	uc002mgi.2	+	4	1158	c.905G>A	c.(904-906)CGC>CAC	p.R302H	ARHGEF18_uc010xjm.1_Missense_Mutation_p.R144H|ARHGEF18_uc002mgh.2_Missense_Mutation_p.R144H|ARHGEF18_uc002mgj.1_5'Flank	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	302	DH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				GCCATTGGCCGCCTCTTCCCA	0.647000												
C19orf59	199675	broad.mit.edu	37	19	7742562	7742562	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:7742562T>G	uc002mhh.1	+	2	159	c.134T>G	c.(133-135)TTC>TGC	p.F45C		NM_174918	NP_777578	Q8IX19	MCEM1_HUMAN	mast cell-expressed membrane protein 1	45	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						ACCTTGGCCTTCAAAAATCAG	0.562000											OREG0025208	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
MUC16	94025	broad.mit.edu	37	19	9063622	9063622	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:9063622A>C	uc002mkp.2	-	3	24028	c.23824T>G	c.(23824-23826)TCA>GCA	p.S7942A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7944	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGAGTGTGAAAATCCTTGA	0.458000												
MUC16	94025	broad.mit.edu	37	19	9073199	9073199	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:9073199T>C	uc002mkp.2	-	3	14451	c.14247A>G	c.(14245-14247)GCA>GCG	p.A4749A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4751	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAAGGACAGGTGCTTGAGAAG	0.473000												
MUC16	94025	broad.mit.edu	37	19	9076652	9076652	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:9076652A>G	uc002mkp.2	-	3	10998	c.10794T>C	c.(10792-10794)ACT>ACC	p.T3598T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3599	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCAAGTTTGAAGTCATGTCTG	0.483000												
OR7D2	162998	broad.mit.edu	37	19	9296924	9296924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:9296924C>T	uc002mkz.1	+	1	655	c.467C>T	c.(466-468)TCC>TTC	p.S156F		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	156	Helical; Name=4; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						GTCATGACATCCCTCCTCCAT	0.468000												
ZNF699	374879	broad.mit.edu	37	19	9406765	9406765	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:9406765T>G	uc002mlc.1	-	5	1315	c.1315A>C	c.(1315-1317)AAA>CAA	p.K439Q		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	439	C2H2-type 9; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTTGATTTTTCACATGTGTA	0.418000												
ZNF560	147741	broad.mit.edu	37	19	9578937	9578937	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:9578937A>G	uc002mlp.1	-	10	896	c.686T>C	c.(685-687)CTT>CCT	p.L229P	ZNF560_uc010dwr.1_Missense_Mutation_p.L123P	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	229					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						GTTGGTCTTAAGGCATGGATG	0.378000												
RGL3	57139	broad.mit.edu	37	19	11515881	11515881	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:11515881A>G	uc002mrp.2	-	9	1191	c.1127T>C	c.(1126-1128)CTT>CCT	p.L376P	RGL3_uc002mrn.2_Missense_Mutation_p.L140P|RGL3_uc002mrm.2_Missense_Mutation_p.L140P|RGL3_uc002mro.2_Missense_Mutation_p.L376P	NM_001035223	NP_001030300	Q3MIN7	RGL3_HUMAN	ral guanine nucleotide dissociation	376	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular		p.S376S(1)		ovary(1)	1						AATCTGCGAAAGTTTCCTGAA	0.542000												
ZNF653	115950	broad.mit.edu	37	19	11597811	11597811	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:11597811T>C	uc002mrz.1	-	5	1387	c.1334A>G	c.(1333-1335)GAG>GGG	p.E445G		NM_138783	NP_620138	Q96CK0	ZN653_HUMAN	zinc finger protein 653	445	Nuclear localization signal (Potential).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTCTCAGGCTCCTTGGGGAT	0.677000												
ZNF441	126068	broad.mit.edu	37	19	11891643	11891643	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:11891643C>T	uc010dyj.2	+	4	1198	c.1004C>T	c.(1003-1005)CCG>CTG	p.P335L	ZNF441_uc002msn.3_Missense_Mutation_p.P291L	NM_152355	NP_689568	Q8N8Z8	ZN441_HUMAN	zinc finger protein 441	335					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GGAGAGAAACCGTATGAATGT	0.418000												
ZNF563	147837	broad.mit.edu	37	19	12429443	12429443	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:12429443T>G	uc002mtp.2	-	4	1634	c.1396A>C	c.(1396-1398)AGA>CGA	p.R466R		NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	466	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTTTCATGTCTTTGACATACA	0.368000												
ZNF442	79973	broad.mit.edu	37	19	12461443	12461443	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:12461443T>G	uc002mtr.1	-	6	1567	c.956A>C	c.(955-957)AAA>ACA	p.K319T	ZNF442_uc010xmk.1_Missense_Mutation_p.K250T	NM_030824	NP_110451	Q9H7R0	ZN442_HUMAN	zinc finger protein 442	319					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(2)|breast(1)|kidney(1)	4						TTCATAGGGTTTCTCTCCAGT	0.423000												
ZNF799	90576	broad.mit.edu	37	19	12502375	12502375	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:12502375T>C	uc010dyt.2	-	4	987	c.837A>G	c.(835-837)AAA>AAG	p.K279K	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	279					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						ATGTATAGGGTTTCTTTCCAG	0.423000												
PRKACA	5566	broad.mit.edu	37	19	14208394	14208394	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:14208394G>C	uc002myc.2	-	7	839	c.639C>G	c.(637-639)AGC>AGG	p.S213R	PRKACA_uc002myb.2_Missense_Mutation_p.S205R|PRKACA_uc010xnm.1_Missense_Mutation_p.S155R|PRKACA_uc002myd.2_Missense_Mutation_p.S155R	NM_002730	NP_002721	P17612	KAPCA_HUMAN	cAMP-dependent protein kinase catalytic subunit	213	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|gluconeogenesis|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|regulation of insulin secretion|transmembrane transport|triglyceride catabolic process|water transport	cAMP-dependent protein kinase complex|centrosome|cytosol|nucleoplasm|plasma membrane	ATP binding|cAMP-dependent protein kinase activity|cAMP-dependent protein kinase inhibitor activity|protein kinase binding			lung(1)	1						CTCCTACTTTGCTCAGGATAA	0.652000												
LPHN1	22859	broad.mit.edu	37	19	14271421	14271421	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:14271421T>G	uc010xnn.1	-	8	1909	c.1613A>C	c.(1612-1614)AAC>ACC	p.N538T	LPHN1_uc010xno.1_Missense_Mutation_p.N533T|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	538	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						GGCCACCTGGTTGACCCAGGG	0.662000												
EMR2	30817	broad.mit.edu	37	19	14857053	14857053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:14857053C>T	uc002mzp.1	-	18	2630	c.2174G>A	c.(2173-2175)CGG>CAG	p.R725Q	EMR2_uc010dzs.1_Missense_Mutation_p.R184Q|EMR2_uc010xnw.1_Missense_Mutation_p.R667Q|EMR2_uc002mzo.1_Missense_Mutation_p.R714Q|EMR2_uc002mzq.1_Missense_Mutation_p.R665Q|EMR2_uc002mzr.1_Missense_Mutation_p.R676Q|EMR2_uc002mzs.1_Missense_Mutation_p.R583Q|EMR2_uc002mzt.1_Missense_Mutation_p.R621Q|EMR2_uc002mzu.1_Missense_Mutation_p.R632Q|EMR2_uc010xnx.1_RNA	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	725	Cytoplasmic (Potential).				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						CCTTGTGTTCCGGAGGGTGGA	0.483000												
SLC1A6	6511	broad.mit.edu	37	19	15061178	15061178	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:15061178G>T	uc002naa.1	-	9	1532	c.1524C>A	c.(1522-1524)AAC>AAA	p.N508K	SLC1A6_uc010dzu.1_Missense_Mutation_p.N430K|SLC1A6_uc010xod.1_Missense_Mutation_p.N444K	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	508					synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	CCCCCAGTACGTTGGTCATTG	0.577000												
OR10H2	26538	broad.mit.edu	37	19	15839343	15839343	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:15839343T>G	uc002nbm.2	+	1	510	c.490T>G	c.(490-492)TTC>GTC	p.F164V		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	164	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					CTCGGCCATTTTCCAACTGAC	0.567000												
CPAMD8	27151	broad.mit.edu	37	19	17088246	17088246	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:17088246C>T	uc002nfb.2	-	15	1863	c.1831G>A	c.(1831-1833)GTC>ATC	p.V611I		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	564						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TTCTCCCTGACGTAGAAGACC	0.592000												
UNC13A	23025	broad.mit.edu	37	19	17728589	17728589	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:17728589A>C	uc002nhd.2	-	40	4744	c.4744T>G	c.(4744-4746)TTG>GTG	p.L1582V		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1494	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						GCATAGCGCAAGGATTGCAGG	0.602000												
GDF15	9518	broad.mit.edu	37	19	18499616	18499616	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:18499616C>T	uc002niv.2	+	2	830	c.798C>T	c.(796-798)CCC>CCT	p.P266P		NM_004864	NP_004855	Q99988	GDF15_HUMAN	growth differentiation factor 15	266					cell-cell signaling|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			central_nervous_system(1)	1						GCCTGAAGCCCGACACGGTGC	0.637000											OREG0025363	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
ZNF93	81931	broad.mit.edu	37	19	20044675	20044675	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:20044675A>C	uc002non.2	+	4	1022	c.911A>C	c.(910-912)AAG>ACG	p.K304T		NM_031218	NP_112495	P35789	ZNF93_HUMAN	zinc finger protein 93	304	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1						ACTAAACATAAGAAAATTCAT	0.363000												
ZNF493	284443	broad.mit.edu	37	19	21606364	21606364	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:21606364T>G	uc002npx.2	+	2	799	c.519T>G	c.(517-519)ACT>ACG	p.T173T	ZNF493_uc002npw.2_Silent_p.T301T|ZNF493_uc002npy.2_Silent_p.T173T	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	173	C2H2-type 6; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATGGCAAAACTTTTAACCAAT	0.333000												
ZNF43	7594	broad.mit.edu	37	19	21990896	21990896	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:21990896T>G	uc002nqj.2	-	4	2073	c.1943A>C	c.(1942-1944)AAA>ACA	p.K648T	ZNF43_uc010ecv.2_Missense_Mutation_p.K642T|ZNF43_uc002nql.2_Missense_Mutation_p.K642T|ZNF43_uc002nqm.2_Missense_Mutation_p.K642T|ZNF43_uc002nqk.2_Missense_Mutation_p.K578T	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	648					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TTTGTAGGGTTTCTCCTCAGT	0.368000												
ZNF681	148213	broad.mit.edu	37	19	23927176	23927176	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:23927176T>G	uc002nrk.3	-	4	1318	c.1176A>C	c.(1174-1176)AAA>AAC	p.K392N	ZNF681_uc002nrl.3_Missense_Mutation_p.K323N|ZNF681_uc002nrj.3_Missense_Mutation_p.K323N	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	392					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				ATTTGTAGGGTTTCTCTCCAG	0.408000												
ARHGAP33	115703	broad.mit.edu	37	19	36275211	36275211	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:36275211A>G	uc002obr.1	+	16	1644	c.1559A>G	c.(1558-1560)GAC>GGC	p.D520G	ARHGAP33_uc002obs.1_Missense_Mutation_p.D520G|ARHGAP33_uc002obt.1_Missense_Mutation_p.D384G|ARHGAP33_uc010eel.2_Missense_Mutation_p.D108G|ARHGAP33_uc002obv.1_Missense_Mutation_p.D108G	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	520					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						GCCGGCCTCGACCCTGCAGGT	0.677000												
APLP1	333	broad.mit.edu	37	19	36362645	36362645	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:36362645T>G	uc002oce.2	+	5	807	c.669T>G	c.(667-669)GTT>GTG	p.V223V	APLP1_uc010xsz.1_Silent_p.V184V|APLP1_uc002ocf.2_Silent_p.V223V|APLP1_uc002ocg.2_Silent_p.V126V|APLP1_uc010xta.1_Silent_p.V217V	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	223	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGACAGCAGTTGGGTGAGTGG	0.637000												
NFKBID	84807	broad.mit.edu	37	19	36387301	36387301	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:36387301A>C	uc002oci.1	-	7	972	c.398T>G	c.(397-399)GTT>GGT	p.V133G	NFKBID_uc002och.1_5'UTR|NFKBID_uc002ocj.1_Missense_Mutation_p.V148G	NM_139239	NP_640332	Q8NI38	IKBD_HUMAN	nuclear factor of kappa light polypeptide gene	133	ANK 3.				inflammatory response	nucleus					0						TACCAAGAGAACTCCTGGGAG	0.602000												
ZFP82	284406	broad.mit.edu	37	19	36884189	36884189	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:36884189T>G	uc002ody.1	-	5	1288	c.1053A>C	c.(1051-1053)CAA>CAC	p.Q351H		NM_133466	NP_597723	Q8N141	ZFP82_HUMAN	zinc finger protein 82 homolog	351	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						GTGTTAGTTGTTGTCGCACTC	0.423000												
ZFP82	284406	broad.mit.edu	37	19	36898797	36898797	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:36898797A>C	uc002ody.1	-	3	363	c.128T>G	c.(127-129)GTC>GGC	p.V43G		NM_133466	NP_597723	Q8N141	ZFP82_HUMAN	zinc finger protein 82 homolog	43	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						ACCCAGTGAGACCAAGTTGCT	0.403000												
ZNF382	84911	broad.mit.edu	37	19	37117974	37117974	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:37117974A>C	uc002oek.2	+	5	1288	c.1175A>C	c.(1174-1176)AAG>ACG	p.K392T	ZNF382_uc010efa.2_Missense_Mutation_p.K343T|ZNF382_uc010efb.2_Missense_Mutation_p.K391T|ZNF382_uc002oel.2_Missense_Mutation_p.K391T	NM_032825	NP_116214	Q96SR6	ZN382_HUMAN	zinc finger protein 382	392	C2H2-type 5.|Required for transcriptional repression activity; probably mediates sequence- specific DNA-binding (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			TTTAGGAAGAAGTCATACCTC	0.473000												
ZNF793	390927	broad.mit.edu	37	19	38028502	38028502	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:38028502T>G	uc010efm.2	+	8	1384	c.942T>G	c.(940-942)AGT>AGG	p.S314R	ZNF793_uc010xts.1_Missense_Mutation_p.S314R|ZNF793_uc010efo.2_Intron	NM_001013659	NP_001013681	Q6ZN11	ZN793_HUMAN	zinc finger protein 793	314	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTGTCTGCAGTGAATGCGGGA	0.448000												
ZNF573	126231	broad.mit.edu	37	19	38230164	38230164	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:38230164A>T	uc002ohe.2	-	4	1249	c.1227T>A	c.(1225-1227)ACT>ACA	p.T409T	ZNF573_uc010efs.2_Silent_p.T322T|ZNF573_uc002ohd.2_Silent_p.T407T|ZNF573_uc002ohf.2_Silent_p.T351T|ZNF573_uc002ohg.2_Silent_p.T321T	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	389					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			GTTTCTCGCCAGTATGAGTTT	0.383000												
ZNF573	126231	broad.mit.edu	37	19	38230495	38230495	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:38230495T>A	uc002ohe.2	-	4	918	c.896A>T	c.(895-897)GAG>GTG	p.E299V	ZNF573_uc010efs.2_Missense_Mutation_p.E212V|ZNF573_uc002ohd.2_Missense_Mutation_p.E297V|ZNF573_uc002ohf.2_Missense_Mutation_p.E241V|ZNF573_uc002ohg.2_Missense_Mutation_p.E211V	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	279					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			GTATGGCTTCTCATCAGTATG	0.403000												
RYR1	6261	broad.mit.edu	37	19	38995497	38995497	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:38995497A>C	uc002oit.2	+	51	8307	c.8177A>C	c.(8176-8178)AAG>ACG	p.K2726T	RYR1_uc002oiu.2_Missense_Mutation_p.K2726T|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2726	5.|Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCAGAGAAAAAGGCCACAGTG	0.597000												
EIF3K	27335	broad.mit.edu	37	19	39123298	39123298	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:39123298A>G	uc002oiz.1	+	6	666	c.479A>G	c.(478-480)GAG>GGG	p.E160G	EIF3K_uc010xuh.1_Missense_Mutation_p.E160G|EIF3K_uc010xui.1_Missense_Mutation_p.E73G	NM_013234	NP_037366	Q9UBQ5	EIF3K_HUMAN	eukaryotic translation initiation factor 3,	160					regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex|nucleus	protein binding|ribosome binding|translation initiation factor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CTGCTGGCCGAGATGCTCGGG	0.602000												
LRFN1	57622	broad.mit.edu	37	19	39805078	39805078	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:39805078A>C	uc002okw.2	-	1	899	c.899T>G	c.(898-900)CTG>CGG	p.L300R		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	300	Ig-like.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			CCGTGTGATCAGCGGGGGCTC	0.706000												
ATP1A3	478	broad.mit.edu	37	19	42479813	42479813	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:42479813T>G	uc002osg.2	-	16	2385	c.2231A>C	c.(2230-2232)AAC>ACC	p.N744T	ATP1A3_uc010xwf.1_Missense_Mutation_p.N755T|ATP1A3_uc010xwg.1_Missense_Mutation_p.N714T|ATP1A3_uc010xwh.1_Missense_Mutation_p.N757T|ATP1A3_uc002osh.2_Missense_Mutation_p.N744T	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	744	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						GGAGGCAAAGTTGTCGTCCAG	0.632000												
ATP1A3	478	broad.mit.edu	37	19	42480634	42480634	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:42480634G>A	uc002osg.2	-	15	2182	c.2028C>T	c.(2026-2028)ACC>ACT	p.T676T	ATP1A3_uc010xwf.1_Silent_p.T687T|ATP1A3_uc010xwg.1_Silent_p.T646T|ATP1A3_uc010xwh.1_Silent_p.T689T|ATP1A3_uc002osh.2_Silent_p.T676T	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	676	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						AGACGATCTCGGTGTGATTCT	0.557000												
CEACAM8	1088	broad.mit.edu	37	19	43098046	43098046	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:43098046A>C	uc002oud.2	-	2	173	c.71T>G	c.(70-72)CTT>CGT	p.L24R	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron	NM_001816	NP_001807	P31997	CEAM8_HUMAN	carcinoembryonic antigen-related cell adhesion	24					immune response	anchored to membrane|extracellular space|integral to plasma membrane				ovary(1)	1		Prostate(69;0.00899)				GAAGGTGAAAAGTGAGGCTAG	0.448000												
PSG8	440533	broad.mit.edu	37	19	43268119	43268119	+	Missense_Mutation	SNP	C	C	T	rs148091598	byFrequency	TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:43268119C>T	uc002ouo.2	-	2	477	c.379G>A	c.(379-381)GGA>AGA	p.G127R	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc002oui.2_Intron|PSG8_uc002ouh.2_Missense_Mutation_p.G127R|PSG8_uc010ein.2_Intron|PSG8_uc002ouj.3_Missense_Mutation_p.G2R|PSG8_uc002ouk.3_Intron|PSG8_uc002oul.3_Missense_Mutation_p.G127R|PSG8_uc002oum.3_Missense_Mutation_p.G127R|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Missense_Mutation_p.G127R	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	127	Ig-like V-type.					extracellular region					0		Prostate(69;0.00899)				TCATCACCTCCCATTATGATG	0.473000												
XRCC1	7515	broad.mit.edu	37	19	44050801	44050801	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:44050801T>C	uc002owt.2	-	12	1492	c.1372A>G	c.(1372-1374)AAA>GAA	p.K458E	XRCC1_uc010xwp.1_Missense_Mutation_p.K427E	NM_006297	NP_006288	P18887	XRCC1_HUMAN	X-ray repair cross complementing protein 1	458					base-excision repair|single strand break repair	nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(2)|large_intestine(1)|prostate(1)|breast(1)	7		Prostate(69;0.0153)				GAGGCTGCTTTGGTCTCTTCA	0.473000								Other_BER_factors				
ZNF224	7767	broad.mit.edu	37	19	44611504	44611504	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:44611504A>C	uc002oyh.1	+	6	1493	c.1191A>C	c.(1189-1191)GAA>GAC	p.E397D	uc002oyi.2_RNA	NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	397					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				ACAGTGGAGAAAAACCATTCA	0.423000												
SLC8A2	6543	broad.mit.edu	37	19	47951490	47951490	+	Splice_Site	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:47951490T>A	uc002pgx.2	-	4	1619	c.1341_splice	c.e4-1	p.S447_splice	SLC8A2_uc010xyq.1_Splice_Site_p.S203_splice|SLC8A2_uc010xyr.1_Intron|SLC8A2_uc010ele.2_Splice_Site_p.S447_splice	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor						cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		GTGCCCTCGCTGCGGCGGGGT	0.632000												
SLC8A2	6543	broad.mit.edu	37	19	47960262	47960262	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:47960262T>A	uc002pgx.2	-	3	1543	c.1265A>T	c.(1264-1266)GAG>GTG	p.E422V	SLC8A2_uc010xyq.1_Missense_Mutation_p.E178V|SLC8A2_uc010xyr.1_Intron|SLC8A2_uc010ele.2_Missense_Mutation_p.E422V	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	422	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		GCTGTTGCCCTCGCCGCCCTG	0.667000												
PLA2G4C	8605	broad.mit.edu	37	19	48608695	48608695	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:48608695T>G	uc002phx.2	-	3	413	c.15A>C	c.(13-15)GAA>GAC	p.E5D	PLA2G4C_uc002phw.2_5'UTR|PLA2G4C_uc010elr.2_Missense_Mutation_p.E5D|PLA2G4C_uc010xzd.1_Intron|PLA2G4C_uc002phy.3_Missense_Mutation_p.E5D	NM_003706	NP_003697	Q9UP65	PA24C_HUMAN	phospholipase A2, group IVC isoform 1 precursor	5	PLA2c.				arachidonic acid metabolic process|glycerophospholipid catabolic process|inflammatory response|intracellular signal transduction|parturition	cytosol|membrane	calcium-independent phospholipase A2 activity|phospholipid binding			ovary(1)|skin(1)	2		all_cancers(25;2.84e-05)|all_lung(116;4.62e-05)|Lung NSC(112;7.61e-05)|all_epithelial(76;0.000192)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;8.09e-05)|all cancers(93;0.000517)|Epithelial(262;0.0135)|GBM - Glioblastoma multiforme(486;0.0717)		TTATGGAAACTTCAGAGCTTC	0.463000												
MYBPC2	4606	broad.mit.edu	37	19	50951573	50951573	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:50951573A>C	uc002psf.2	+	13	1449	c.1398A>C	c.(1396-1398)AAA>AAC	p.K466N		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	466	Ig-like C2-type 4.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CTGATGAGAAAGTGACGGGCA	0.562000												
SYT3	84258	broad.mit.edu	37	19	51129247	51129247	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:51129247A>C	uc002pst.2	-	5	1943	c.1309T>G	c.(1309-1311)TTC>GTC	p.F437V	SYT3_uc002psv.2_Missense_Mutation_p.F437V|SYT3_uc010ycd.1_Missense_Mutation_p.F437V	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	437	C2 2.|Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		CAGAGTGAGAAGTTGAGCTCC	0.557000												
SYT3	84258	broad.mit.edu	37	19	51140563	51140563	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:51140563A>C	uc002pst.2	-	1	740	c.106T>G	c.(106-108)TTC>GTC	p.F36V	SYT3_uc002psv.2_Missense_Mutation_p.F36V|SYT3_uc010ycd.1_Missense_Mutation_p.F36V	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	36	Vesicular (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		CGGTCATTGAACTCCTGGCAC	0.632000												
KLK3	354	broad.mit.edu	37	19	51361465	51361465	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:51361465T>C	uc002pts.1	+	3	428	c.387T>C	c.(385-387)CCT>CCC	p.P129P	KLK3_uc010ycj.1_Intron|KLK3_uc002ptr.1_Silent_p.P86P|KLK3_uc010eof.1_RNA	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3	129	Peptidase S1.				negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		TGTCAGAGCCTGCCGAGCTCA	0.617000												
KLK10	5655	broad.mit.edu	37	19	51520422	51520422	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:51520422G>A	uc002puy.2	-	3	294	c.213C>T	c.(211-213)TGC>TGT	p.C71C	KLK10_uc002puz.2_Silent_p.C71C|KLK10_uc002pva.2_Silent_p.C71C	NM_145888	NP_665895	O43240	KLK10_HUMAN	kallikrein-related peptidase 10 preproprotein	71	Peptidase S1.				cell cycle|proteolysis	extracellular region	serine-type endopeptidase activity			lung(2)	2		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00885)		GGACACCCGCGCAGTGGAACG	0.672000											OREG0025646	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
CD33	945	broad.mit.edu	37	19	51742771	51742771	+	Splice_Site	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:51742771A>G	uc002pwa.2	+	7	965	c.925_splice	c.e7-2	p.K309_splice	CD33_uc010eos.1_3'UTR|CD33_uc010eot.1_Splice_Site_p.K182_splice|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor						cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	CCTCTCCATAAGAAACACCAG	0.502000												
ZNF480	147657	broad.mit.edu	37	19	52825169	52825169	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:52825169A>T	uc010ydl.1	+	5	736	c.666A>T	c.(664-666)CAA>CAT	p.Q222H	ZNF480_uc002pyv.2_Missense_Mutation_p.Q145H|ZNF480_uc010ydm.1_Missense_Mutation_p.Q179H|ZNF480_uc010epn.2_Missense_Mutation_p.Q53H|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	222	C2H2-type 1; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		CTAAACATCAAGTAATCCATA	0.373000												
ZNF816A	125893	broad.mit.edu	37	19	53454176	53454176	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:53454176A>C	uc002qal.1	-	5	1153	c.852T>G	c.(850-852)ACT>ACG	p.T284T	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Silent_p.T268T	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	284					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		TACACTTGTAAGTTTTCTCAC	0.373000												
BIRC8	112401	broad.mit.edu	37	19	53793027	53793027	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:53793027A>C	uc002qbk.2	-	1	1849	c.601T>G	c.(601-603)TTT>GTT	p.F201V		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	201	RING-type.				apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		CAAGGAATAAAAACAACAGCG	0.443000												
ZNF331	55422	broad.mit.edu	37	19	54079977	54079977	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:54079977A>C	uc002qbx.1	+	7	1597	c.163A>C	c.(163-165)AGT>CGT	p.S55R	ZNF331_uc002qby.1_Missense_Mutation_p.S55R|ZNF331_uc002qbz.1_Missense_Mutation_p.S55R|ZNF331_uc002qca.1_Missense_Mutation_p.S55R|ZNF331_uc010eqr.1_Missense_Mutation_p.S55R|ZNF331_uc002qcb.1_Missense_Mutation_p.S55R|ZNF331_uc002qcc.1_Missense_Mutation_p.S55R|ZNF331_uc002qcd.1_Missense_Mutation_p.S55R	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	55	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		TGAAAATAAGAGTTTACCTAC	0.358000			T	?	follicular thyroid adenoma							
LILRA5	353514	broad.mit.edu	37	19	54823827	54823827	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:54823827A>G	uc002qfe.2	-	2	188	c.68T>C	c.(67-69)CTC>CCC	p.L23P	LILRA5_uc002qff.2_Missense_Mutation_p.L23P|LILRA5_uc010yev.1_Missense_Mutation_p.L23P|LILRA5_uc010yew.1_Missense_Mutation_p.L23P|LILRA5_uc002qfh.1_Missense_Mutation_p.L23P|LILRA5_uc002qfg.1_Missense_Mutation_p.L23P	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	23					innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CAGAACCATGAGGGCAGGGCT	0.617000												
LENG8	114823	broad.mit.edu	37	19	54969734	54969734	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:54969734C>T	uc002qfv.1	+	14	2307	c.2163C>T	c.(2161-2163)CTC>CTT	p.L721L	LENG8_uc002qfw.2_Intron			Q96PV6	LENG8_HUMAN	RecName: Full=Leukocyte receptor cluster member 8;	721							protein binding			central_nervous_system(1)|pancreas(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.139)		TGCCTTTGCTCTTCCCATCCT	0.617000												
NCR1	9437	broad.mit.edu	37	19	55421419	55421419	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:55421419T>G	uc002qib.2	+	5	714	c.676T>G	c.(676-678)TTT>GTT	p.F226V	NCR1_uc002qic.2_Missense_Mutation_p.F226V|NCR1_uc002qie.2_Missense_Mutation_p.F226V|NCR1_uc002qid.2_Missense_Mutation_p.F131V|NCR1_uc002qif.2_Missense_Mutation_p.F131V|NCR1_uc010esj.2_Missense_Mutation_p.F119V	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	226	Extracellular (Potential).				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		AGACCCCACCTTTCCTGGTGA	0.448000												
NLRP7	199713	broad.mit.edu	37	19	55451541	55451541	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:55451541T>C	uc002qih.3	-	4	722	c.646A>G	c.(646-648)AGC>GGC	p.S216G	NLRP7_uc002qig.3_Missense_Mutation_p.S216G|NLRP7_uc002qii.3_Missense_Mutation_p.S216G|NLRP7_uc010esk.2_Missense_Mutation_p.S216G|NLRP7_uc010esl.2_Missense_Mutation_p.S244G	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	216	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		CCCATGCGGCTGAGCTCCTTG	0.552000												
SYT5	6861	broad.mit.edu	37	19	55686273	55686273	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:55686273T>G	uc002qjm.1	-	6	1863	c.803A>C	c.(802-804)AAG>ACG	p.K268T	SYT5_uc002qjp.2_Missense_Mutation_p.K264T|SYT5_uc002qjn.1_Missense_Mutation_p.K268T|SYT5_uc002qjo.1_Missense_Mutation_p.K267T	NM_003180	NP_003171	O00445	SYT5_HUMAN	synaptotagmin V	268	Cytoplasmic (Potential).|C2 2.				energy reserve metabolic process|regulation of insulin secretion|synaptic transmission	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane	metal ion binding|transporter activity				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		TACGTCCATCTTCTTCAGGTT	0.582000												
BRSK1	84446	broad.mit.edu	37	19	55800909	55800909	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:55800909A>T	uc002qkg.2	+	4	656	c.379A>T	c.(379-381)AGA>TGA	p.R127*	BRSK1_uc002qkf.2_Nonsense_Mutation_p.R143*	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	127	Protein kinase.				establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		AAAGAAGGGGAGACTGACGCC	0.582000												
ZNF628	89887	broad.mit.edu	37	19	55993985	55993985	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:55993985C>G	uc002qld.2	+	3	1978	c.1413C>G	c.(1411-1413)GAC>GAG	p.D471E	NAT14_uc002qle.1_5'Flank	NM_033113	NP_149104	Q5EBL2	ZN628_HUMAN	zinc finger protein 628	471	C2H2-type 10.					nucleus	DNA binding|zinc ion binding				0	Breast(117;0.155)		BRCA - Breast invasive adenocarcinoma(297;0.18)|LUSC - Lung squamous cell carcinoma(43;0.193)	GBM - Glioblastoma multiforme(193;0.0531)		ACCTGCGGGACCACACGGGCG	0.711000												
NLRP9	338321	broad.mit.edu	37	19	56249468	56249468	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:56249468C>G	uc002qly.2	-	1	301	c.273G>C	c.(271-273)GAG>GAC	p.E91D		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	91	DAPIN.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TACTTCTCATCTCTTCCTGAG	0.498000												
NLRP9	338321	broad.mit.edu	37	19	56249481	56249481	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:56249481T>G	uc002qly.2	-	1	288	c.260A>C	c.(259-261)AAG>ACG	p.K87T		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	87	DAPIN.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TTCCTGAGCCTTTGTCCAGAG	0.493000												
ZNF471	57573	broad.mit.edu	37	19	57036399	57036399	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:57036399A>G	uc002qnh.2	+	5	1096	c.963A>G	c.(961-963)AAA>AAG	p.K321K		NM_020813	NP_065864	Q9BX82	ZN471_HUMAN	zinc finger protein 471	321	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0307)		ATGAATGTAAAGAATGTGGCA	0.438000												
ZNF264	9422	broad.mit.edu	37	19	57723710	57723710	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:57723710G>A	uc002qob.2	+	4	1658	c.1245G>A	c.(1243-1245)AAG>AAA	p.K415K		NM_003417	NP_003408	O43296	ZN264_HUMAN	zinc finger protein 264	415	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0135)		CCTACCTCAAGAGGCACCAGC	0.532000												
ZNF548	147694	broad.mit.edu	37	19	57909914	57909914	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:57909914G>T	uc002qom.2	+	3	509	c.259G>T	c.(259-261)GAG>TAG	p.E87*	ZNF547_uc002qpm.3_Intron|ZNF548_uc002qon.2_Nonsense_Mutation_p.E90*	NM_152909	NP_690873	Q8NEK5	ZN548_HUMAN	zinc finger protein 548	87					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CCACCCTAGTGAGACATGTGG	0.483000												
ZNF772	400720	broad.mit.edu	37	19	57985254	57985254	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:57985254T>C	uc002qot.2	-	5	1119	c.858A>G	c.(856-858)AGA>AGG	p.R286R	ZNF547_uc002qpm.3_Intron|ZNF772_uc010ygy.1_Silent_p.R245R|ZNF772_uc010ygz.1_Silent_p.R174R|ZNF772_uc010yha.1_Silent_p.R232R|ZNF772_uc002qou.2_Silent_p.R174R	NM_001024596	NP_001019767	Q68DY9	ZN772_HUMAN	zinc finger protein 772 isoform 1	286	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)|Lung(386;0.174)		CAGTGTGGACTCTCTGGTGTT	0.488000												
ZNF550	162972	broad.mit.edu	37	19	58059222	58059222	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:58059222T>G	uc002qpe.1	-	2	267	c.267A>C	c.(265-267)GAA>GAC	p.E89D	ZNF547_uc002qpm.3_Intron|ZNF549_uc010eud.1_Intron|ZNF550_uc002qpc.2_RNA|ZNF550_uc010eue.1_RNA|ZNF550_uc002qpd.2_RNA	NM_001039654	NP_001034743	Q7Z398	ZN550_HUMAN	zinc finger protein 550	130					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CCAAAAGCCCTTCCTCATCCC	0.532000												
ZNF550	162972	broad.mit.edu	37	19	58067709	58067709	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:58067709T>G	uc002qpe.1	-	1	17	c.17A>C	c.(16-18)AAG>ACG	p.K6T	ZNF547_uc002qpm.3_Intron|ZNF549_uc010eud.1_3'UTR|ZNF550_uc002qpc.2_RNA|ZNF550_uc010eue.1_RNA|ZNF550_uc002qpd.2_RNA	NM_001039654	NP_001034743	Q7Z398	ZN550_HUMAN	zinc finger protein 550	15	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AGCCACATCCTTGAAGGTCAC	0.527000												
ZNF530	348327	broad.mit.edu	37	19	58117644	58117644	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:58117644A>G	uc002qpk.2	+	3	971	c.751A>G	c.(751-753)AGT>GGT	p.S251G	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	251	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CTTTAGTCAAAGTTCTGGCTT	0.408000												
ZNF154	7710	broad.mit.edu	37	19	58213775	58213775	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:58213775C>A	uc010euf.2	-	3	782	c.542G>T	c.(541-543)AGA>ATA	p.R181I	ZNF776_uc002qpx.2_Intron|ZNF154_uc002qpy.2_RNA	NM_001085384	NP_001078853	Q13106	ZN154_HUMAN	zinc finger protein 154	181	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		AGTGTGAAGTCTCCAATGGTC	0.448000												
ZSCAN18	65982	broad.mit.edu	37	19	58597553	58597553	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:58597553T>C	uc002qri.2	-	6	1135	c.826A>G	c.(826-828)AGC>GGC	p.S276G	ZSCAN18_uc002qrj.3_Missense_Mutation_p.S276G|ZSCAN18_uc010yhs.1_Missense_Mutation_p.S141G|ZSCAN18_uc002qrh.2_Missense_Mutation_p.S276G|ZSCAN18_uc010yht.1_Missense_Mutation_p.S332G|ZSCAN18_uc002qrk.1_3'UTR|ZSCAN18_uc002qrl.2_3'UTR	NM_001145543	NP_001139015	Q8TBC5	ZSC18_HUMAN	zinc finger and SCAN domain containing 18	276					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.114)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GGGAGGCTGCTTCCTTGTGGA	0.587000												
TRIM28	10155	broad.mit.edu	37	19	59057202	59057202	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr19:59057202G>A	uc002qtg.1	+	3	814	c.525G>A	c.(523-525)GAG>GAA	p.E175E	TRIM28_uc010eut.1_Intron|TRIM28_uc002qth.1_5'Flank	NM_005762	NP_005753	Q13263	TIF1B_HUMAN	tripartite motif-containing 28 protein	175	RBCC domain.|B box-type 1; atypical.				epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent	nucleoplasm	chromo shadow domain binding|ligase activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0434)|all cancers(4;1.39e-13)|Epithelial(4;1.01e-10)|OV - Ovarian serous cystadenocarcinoma(4;2.34e-09)|GBM - Glioblastoma multiforme(193;0.0102)|Lung(386;0.179)		CTCTGTGTGAGACCTGTGTAG	0.582000												
ASAP2	8853	broad.mit.edu	37	2	9498920	9498920	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:9498920A>T	uc002qzh.2	+	15	1703	c.1363A>T	c.(1363-1365)ACC>TCC	p.T455S	ASAP2_uc002qzi.2_Missense_Mutation_p.T455S	NM_003887	NP_003878	O43150	ASAP2_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	455	Arf-GAP.				regulation of ARF GTPase activity	Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|protein binding|zinc ion binding				0						GGGCATCCTGACCTGCATCGA	0.512000												
RRM2	6241	broad.mit.edu	37	2	10269377	10269377	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:10269377A>C	uc002rah.2	+	10	1225	c.1034A>C	c.(1033-1035)AAC>ACC	p.N345T		NM_001034	NP_001025	P31350	RIR2_HUMAN	ribonucleotide reductase M2 polypeptide isoform	345					deoxyribonucleoside diphosphate metabolic process|deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol	ribonucleoside-diphosphate reductase activity|transition metal ion binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.188)|OV - Ovarian serous cystadenocarcinoma(76;0.221)		AGAGTAGAGAACCCATTTGAC	0.388000												
NBAS	51594	broad.mit.edu	37	2	15607836	15607836	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:15607836T>A	uc002rcc.1	-	18	1996	c.1970A>T	c.(1969-1971)AAG>ATG	p.K657M	NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	657										ovary(2)|liver(1)|skin(1)	4						CTTGAGCTCCTTTTCCTTTTT	0.343000												
PUM2	23369	broad.mit.edu	37	2	20508339	20508339	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:20508339A>T	uc002rds.1	-	5	548	c.525T>A	c.(523-525)ACT>ACA	p.T175T	PUM2_uc002rdt.1_Silent_p.T175T|PUM2_uc002rdr.2_Silent_p.T114T|PUM2_uc010yjy.1_Silent_p.T175T|PUM2_uc002rdu.1_Silent_p.T175T|PUM2_uc010yjz.1_Silent_p.T114T	NM_015317	NP_056132	Q8TB72	PUM2_HUMAN	pumilio homolog 2	175	Interaction with SNAPIN.				regulation of translation	perinuclear region of cytoplasm|stress granule	protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GACTTCCAGGAGTACGACTAC	0.398000												
APOB	338	broad.mit.edu	37	2	21228452	21228452	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:21228452A>C	uc002red.2	-	26	11416	c.11288T>G	c.(11287-11289)CTT>CGT	p.L3763R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3763					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCTGAAGTCAAGTTTGCACGA	0.403000												
APOB	338	broad.mit.edu	37	2	21235329	21235329	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:21235329A>C	uc002red.2	-	26	4539	c.4411T>G	c.(4411-4413)TTG>GTG	p.L1471V		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1471					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTGGAGTCCAAATGAACTGAA	0.413000												
ATAD2B	54454	broad.mit.edu	37	2	24118816	24118816	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:24118816T>G	uc002rek.3	-	2	535	c.241A>C	c.(241-243)AGT>CGT	p.S81R	ATAD2B_uc010yki.1_RNA|ATAD2B_uc010exx.1_Missense_Mutation_p.S81R	NM_017552	NP_060022	Q9ULI0	ATD2B_HUMAN	ATPase family, AAA domain containing 2B	81							ATP binding|nucleoside-triphosphatase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGGCTATCACTTAAACTACCA	0.328000												
C2orf39	92749	broad.mit.edu	37	2	26647191	26647191	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:26647191A>T	uc002rhg.2	+	4	483	c.409A>T	c.(409-411)ATC>TTC	p.I137F	C2orf39_uc010eym.1_Intron	NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	137	Potential.										0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATTCGATGAAATCACCTCAAA	0.488000												
OTOF	9381	broad.mit.edu	37	2	26697508	26697508	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:26697508T>G	uc002rhk.2	-	26	3288	c.3161A>C	c.(3160-3162)AAA>ACA	p.K1054T	OTOF_uc010yla.1_5'Flank|OTOF_uc002rhh.2_Missense_Mutation_p.K307T|OTOF_uc002rhi.2_Missense_Mutation_p.K364T|OTOF_uc002rhj.2_Missense_Mutation_p.K307T	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1054	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CACCAGGGGTTTGGCGAAGGT	0.527000												
DPYSL5	56896	broad.mit.edu	37	2	27165557	27165557	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:27165557A>C	uc002rhu.3	+	11	1537	c.1379A>C	c.(1378-1380)AAG>ACG	p.K460T	DPYSL5_uc002rhv.3_Missense_Mutation_p.K460T	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	460					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCACCGGCAAGTTCTGTCCC	0.617000											OREG0014510	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
C2orf16	84226	broad.mit.edu	37	2	27804228	27804228	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:27804228A>C	uc002rkz.3	+	1	4840	c.4789A>C	c.(4789-4791)AAC>CAC	p.N1597H	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1597	1.|27 X 8 AA approximative tandem repeat of P-S-E-R-S-H-H-S.|Arg-rich.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CTCTAGGAAAAACCATTCCAG	0.552000												
C2orf71	388939	broad.mit.edu	37	2	29296021	29296021	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:29296021G>A	uc002rmt.1	-	1	1107	c.1107C>T	c.(1105-1107)ACC>ACT	p.T369T		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	369					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						GGTCCCAGCTGGTTTGCTTGC	0.592000												
C2orf71	388939	broad.mit.edu	37	2	29296170	29296170	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:29296170G>A	uc002rmt.1	-	1	958	c.958C>T	c.(958-960)CGC>TGC	p.R320C		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	320			R -> C.		response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CTCAGGAGGCGTTCATCCACA	0.597000												
EHD3	30845	broad.mit.edu	37	2	31483561	31483561	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:31483561A>C	uc002rnu.2	+	4	1296	c.688A>C	c.(688-690)ATG>CTG	p.M230L	EHD3_uc010ymt.1_Intron	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	230					blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					GCAGCAGCTGATGCGGGTGTA	0.572000												
BIRC6	57448	broad.mit.edu	37	2	32828139	32828139	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:32828139A>C	uc010ezu.2	+	71	14193	c.14059A>C	c.(14059-14061)AGC>CGC	p.S4687R		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4687	Ubiquitin-conjugating.				anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TCAGACCTCAAGCTTTTTGCA	0.318000												
SOS1	6654	broad.mit.edu	37	2	39251221	39251221	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:39251221T>A	uc002rrk.3	-	9	1173	c.1132A>T	c.(1132-1134)ACA>TCA	p.T378S	SOS1_uc010ynr.1_RNA|SOS1_uc002rrj.3_5'UTR|SOS1_uc002rrl.2_Missense_Mutation_p.T110S	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	378	DH.				apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				AGCAAAGCTGTTATTGCTTGT	0.303000									Noonan_syndrome			
PLEKHH2	130271	broad.mit.edu	37	2	43991482	43991482	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:43991482T>G	uc010yny.1	+	29	4357	c.4274T>G	c.(4273-4275)CTT>CGT	p.L1425R		NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	1425	FERM.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GAGAAATTACTTTTTGCCATG	0.378000												
PREPL	9581	broad.mit.edu	37	2	44571048	44571048	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:44571048A>C	uc002ruf.2	-	4	487	c.452T>G	c.(451-453)CTT>CGT	p.L151R	PREPL_uc002rug.2_Missense_Mutation_p.L151R|PREPL_uc002ruh.2_Missense_Mutation_p.L151R|PREPL_uc010fax.2_Missense_Mutation_p.L151R|PREPL_uc002rui.3_Missense_Mutation_p.L62R|PREPL_uc002ruj.1_Missense_Mutation_p.L62R|PREPL_uc002ruk.1_Missense_Mutation_p.L151R	NM_006036	NP_006027	Q4J6C6	PPCEL_HUMAN	prolyl endopeptidase-like isoform C	151					proteolysis	cytosol	serine-type endopeptidase activity			ovary(1)	1		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GTCTAACTTAAGTTCCTCCAA	0.323000												
SOCS5	9655	broad.mit.edu	37	2	46985924	46985924	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:46985924A>T	uc002rvf.2	+	2	419	c.255A>T	c.(253-255)GAA>GAT	p.E85D	SOCS5_uc010yoe.1_Missense_Mutation_p.E54D|SOCS5_uc002rvg.2_Missense_Mutation_p.E85D	NM_014011	NP_054730	O75159	SOCS5_HUMAN	suppressor of cytokine signaling 5	85					cell growth|cytokine-mediated signaling pathway|intracellular signal transduction|negative regulation of signal transduction|negative regulation of T-helper 2 cell differentiation|positive regulation of T-helper 1 cell differentiation|regulation of growth					ovary(1)|lung(1)|central_nervous_system(1)	3		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			GTGCCACAGAAATCCCTCAAA	0.403000												
ACYP2	98	broad.mit.edu	37	2	54531856	54531856	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:54531856A>G	uc002rxq.3	+	4	643	c.217A>G	c.(217-219)AGT>GGT	p.S73G		NM_138448	NP_612457	P14621	ACYP2_HUMAN	acylphosphatase 2	73	Acylphosphatase-like.				phosphate metabolic process		acylphosphatase activity				0						TGGAAGCCCTAGTTCTCGCAT	0.328000												
MTIF2	4528	broad.mit.edu	37	2	55476576	55476576	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:55476576T>G	uc002ryn.2	-	10	1673	c.936A>C	c.(934-936)GAA>GAC	p.E312D	MTIF2_uc010yox.1_5'UTR|MTIF2_uc002ryo.2_Missense_Mutation_p.E312D	NM_001005369	NP_001005369	P46199	IF2M_HUMAN	mitochondrial translational initiation factor 2	312	G-domain.				regulation of translational initiation	mitochondrion	GTP binding|GTPase activity|ribosomal small subunit binding|translation initiation factor activity			ovary(1)	1						CTCCATAATCTTCACATACCA	0.438000												
USP34	9736	broad.mit.edu	37	2	61508340	61508340	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:61508340T>G	uc002sbe.2	-	38	5058	c.5036A>C	c.(5035-5037)AAG>ACG	p.K1679T	USP34_uc002sbf.2_5'Flank	NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	1679					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			CAGGGATAACTTATAGAGACC	0.393000												
AFTPH	54812	broad.mit.edu	37	2	64778718	64778718	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:64778718T>G	uc002sdc.2	+	1	142	c.110T>G	c.(109-111)GTT>GGT	p.V37G	AFTPH_uc002scz.2_Missense_Mutation_p.V37G|AFTPH_uc002sda.2_Missense_Mutation_p.V37G|AFTPH_uc002sdb.2_Missense_Mutation_p.V37G	NM_203437	NP_982261	Q6ULP2	AFTIN_HUMAN	aftiphilin protein isoform a	37					protein transport	AP-1 adaptor complex|cytosol|nucleus	clathrin binding			ovary(2)	2						TTTTCAGAAGTTAGCCCTTCT	0.413000												
ALMS1	7840	broad.mit.edu	37	2	73650099	73650099	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:73650099T>A	uc002sje.1	+	5	875	c.764T>A	c.(763-765)CTG>CAG	p.L255Q	ALMS1_uc002sjf.1_Missense_Mutation_p.L212Q	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	254					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TTTGCACCTCTGAGGTAGGAT	0.393000												
HTRA2	27429	broad.mit.edu	37	2	74757775	74757775	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:74757775T>C	uc002smi.1	+	2	1140	c.538T>C	c.(538-540)TCG>CCG	p.S180P	AUP1_uc002sme.2_5'Flank|AUP1_uc002smf.2_5'Flank|AUP1_uc002smg.2_5'Flank|AUP1_uc002smh.2_5'Flank|AUP1_uc010yrx.1_5'Flank|AUP1_uc010yry.1_5'Flank|HTRA2_uc002smj.1_Missense_Mutation_p.S180P|HTRA2_uc002smk.1_Missense_Mutation_p.S180P|HTRA2_uc002sml.1_Missense_Mutation_p.S180P|HTRA2_uc002smm.1_5'UTR|HTRA2_uc002smn.1_5'UTR|HTRA2_uc010ffl.2_5'UTR	NM_013247	NP_037379	O43464	HTRA2_HUMAN	HtrA serine peptidase 2 isoform 1 preproprotein	180	Serine protease.				apoptosis|proteolysis|response to stress	CD40 receptor complex|endoplasmic reticulum membrane|internal side of plasma membrane|mitochondrial intermembrane space|mitochondrial membrane|nucleus	serine-type endopeptidase activity|unfolded protein binding			ovary(1)	1						GGTCCCTATCTCGAACGGCTC	0.617000												
SEMA4F	10505	broad.mit.edu	37	2	74902419	74902419	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:74902419T>A	uc002sna.1	+	10	1391	c.1280T>A	c.(1279-1281)CTG>CAG	p.L427Q	SEMA4F_uc010ffq.1_Missense_Mutation_p.L394Q|SEMA4F_uc010ffr.1_Missense_Mutation_p.L39Q|SEMA4F_uc002snb.1_Missense_Mutation_p.L39Q|SEMA4F_uc002snc.1_Missense_Mutation_p.L272Q	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	427	Sema.|Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CACCCCCTGCTGGTCACTACA	0.562000											OREG0014721	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
CNNM4	26504	broad.mit.edu	37	2	97474441	97474441	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:97474441T>G	uc002swx.2	+	6	2190	c.2092T>G	c.(2092-2094)TTC>GTC	p.F698V	CNNM4_uc010yuy.1_Missense_Mutation_p.F185V	NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	698					biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						CATCTCTGACTTCAGCGTCCG	0.562000												
VWA3B	200403	broad.mit.edu	37	2	98809455	98809455	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:98809455A>T	uc002syo.2	+	11	1825	c.1561A>T	c.(1561-1563)AGC>TGC	p.S521C	VWA3B_uc010yvh.1_Missense_Mutation_p.S371C|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.S40C|VWA3B_uc002sym.2_Missense_Mutation_p.S521C|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.S178C|VWA3B_uc002syp.1_5'UTR	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	521	VWFA.									ovary(3)|large_intestine(2)|skin(1)	6						CTCAATGAAGAGCAAACTGGA	0.423000												
TSGA10	80705	broad.mit.edu	37	2	99681472	99681472	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:99681472A>C	uc002szg.3	-	14	1962	c.1334T>G	c.(1333-1335)CTT>CGT	p.L445R	TSGA10_uc002szh.3_Missense_Mutation_p.L445R|TSGA10_uc002szi.3_Missense_Mutation_p.L445R|TSGA10_uc010fin.1_Missense_Mutation_p.L445R	NM_182911	NP_878915	Q9BZW7	TSG10_HUMAN	testis specific, 10	445					spermatogenesis	cytoplasm|nuclear membrane				ovary(1)|central_nervous_system(1)	2						AGCAGTGATAAGTTCCAGTTT	0.383000												
EIF5B	9669	broad.mit.edu	37	2	100015285	100015285	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:100015285A>C	uc002tab.2	+	23	3652	c.3468A>C	c.(3466-3468)GAA>GAC	p.E1156D	EIF5B_uc010yvq.1_Missense_Mutation_p.E138D	NM_015904	NP_056988	O60841	IF2P_HUMAN	eukaryotic translation initiation factor 5B	1156					regulation of translational initiation	cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			ovary(2)|pancreas(1)	3						AAGGACAAGAAGTTTGTGTAA	0.308000												
AFF3	3899	broad.mit.edu	37	2	100217911	100217911	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:100217911A>C	uc002tag.2	-	13	1593	c.1357T>G	c.(1357-1359)TTC>GTC	p.F453V	AFF3_uc002taf.2_Missense_Mutation_p.F478V|AFF3_uc010fiq.1_Missense_Mutation_p.F453V|AFF3_uc010yvr.1_Missense_Mutation_p.F606V|AFF3_uc002tah.1_Missense_Mutation_p.F478V	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	453					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						GGGCTGGAGAAGTGGGGGGGC	0.577000												
GCC2	9648	broad.mit.edu	37	2	109103051	109103051	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:109103051A>C	uc002tec.2	+	16	4031	c.3877A>C	c.(3877-3879)AGT>CGT	p.S1293R	GCC2_uc002ted.2_Missense_Mutation_p.S1192R	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	1293	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						GCGTACGCTAAGTGCATACCA	0.507000												
GCC2	9648	broad.mit.edu	37	2	109116111	109116111	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:109116111T>C	uc002tec.2	+	22	5039	c.4885T>C	c.(4885-4887)TTG>CTG	p.L1629L	GCC2_uc002ted.2_Silent_p.L1528L	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	1629	Mediates interaction with RAB9A.|GRIP.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						GTTCATTTTCTTGAAACCAGG	0.423000												
EDAR	10913	broad.mit.edu	37	2	109546637	109546637	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:109546637T>G	uc002teq.3	-	3	544	c.113A>C	c.(112-114)AAC>ACC	p.N38T	EDAR_uc010fjn.2_Missense_Mutation_p.N38T|EDAR_uc010yws.1_Missense_Mutation_p.N38T	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	38	TNFR-Cys 1.|Extracellular (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						CGTAGTCTGGTTGTAGTACTC	0.627000												
CYP27C1	339761	broad.mit.edu	37	2	127956986	127956986	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:127956986T>G	uc002tod.2	-	4	649	c.518A>C	c.(517-519)AAC>ACC	p.N173T		NM_001001665	NP_001001665	Q4G0S4	C27C1_HUMAN	cytochrome P450, family 27, subfamily C,	173						membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.071)		CTCAGTCACGTTGGCGTAGAT	0.582000												
ERCC3	2071	broad.mit.edu	37	2	128050327	128050327	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:128050327T>C	uc002toh.1	-	3	425	c.330A>G	c.(328-330)CCA>CCG	p.P110P	ERCC3_uc002toe.1_5'Flank|ERCC3_uc002tof.1_Silent_p.P46P|ERCC3_uc002tog.1_Silent_p.P46P|ERCC3_uc010flx.1_Intron|ERCC3_uc010yzh.1_RNA|ERCC3_uc010fly.2_Intron	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	110					cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		GCACATGGGTTGGTCGGCACA	0.512000			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum			
SAP130	79595	broad.mit.edu	37	2	128707874	128707874	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:128707874T>G	uc002tpp.2	-	16	2636	c.2504A>C	c.(2503-2505)AAG>ACG	p.K835T	SAP130_uc002tpn.2_Missense_Mutation_p.K595T|SAP130_uc002tpo.2_Missense_Mutation_p.K615T|SAP130_uc010fmd.2_Missense_Mutation_p.K870T	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	835	Pro-rich.				histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		CTTTCGAGGCTTTTTCCTTGG	0.498000												
IMP4	92856	broad.mit.edu	37	2	131103502	131103502	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:131103502A>T	uc002tra.1	+	6	607	c.590A>T	c.(589-591)AAG>ATG	p.K197M		NM_033416	NP_219484	Q96G21	IMP4_HUMAN	IMP4, U3 small nucleolar ribonucleoprotein,	197	Brix.				rRNA processing|translation	nucleolus|ribonucleoprotein complex	aminoacyl-tRNA ligase activity|ATP binding|protein binding			central_nervous_system(2)	2	Colorectal(110;0.1)					CGCCTGGGCAAGCGGGTGAGT	0.632000												
LCT	3938	broad.mit.edu	37	2	136561695	136561695	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:136561695T>A	uc002tuu.1	-	11	4479	c.4468A>T	c.(4468-4470)ACC>TCC	p.T1490S		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1490	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TGGTAAATGGTCACCTGGGAA	0.517000												
NEB	4703	broad.mit.edu	37	2	152423760	152423760	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:152423760A>C	uc010fnx.2	-	86	13166	c.12975T>G	c.(12973-12975)AAT>AAG	p.N4325K	NEB_uc002txr.2_Missense_Mutation_p.N748K	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4325	Nebulin 118.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGTGCAAGTAATTACGATAAT	0.423000												
NEB	4703	broad.mit.edu	37	2	152520300	152520300	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:152520300T>G	uc010fnx.2	-	45	5716	c.5525A>C	c.(5524-5526)AAG>ACG	p.K1842T		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1842	Nebulin 48.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GTGCACCAGCTTGGGGTCATC	0.488000												
SCN3A	6328	broad.mit.edu	37	2	166011114	166011114	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:166011114A>T	uc002ucx.2	-	11	1720	c.1228T>A	c.(1228-1230)TTG>ATG	p.L410M	SCN3A_uc002ucy.2_Missense_Mutation_p.L410M|SCN3A_uc002ucz.2_Missense_Mutation_p.L410M|SCN3A_uc002uda.1_Missense_Mutation_p.L279M|SCN3A_uc002udb.1_Missense_Mutation_p.L279M	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	410	Helical; Name=S6 of repeat I; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	AATGAGCCCAAGAAAATGACC	0.428000												
SCN2A	6326	broad.mit.edu	37	2	166210929	166210929	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:166210929A>C	uc002udc.2	+	17	3437	c.3147A>C	c.(3145-3147)AAA>AAC	p.K1049N	SCN2A_uc002udd.2_Missense_Mutation_p.K1049N|SCN2A_uc002ude.2_Missense_Mutation_p.K1049N	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1049					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ATAATAAAAAAGACAGCTGTA	0.348000												
SCN2A	6326	broad.mit.edu	37	2	166237231	166237231	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:166237231A>G	uc002udc.2	+	24	4728	c.4438A>G	c.(4438-4440)AAA>GAA	p.K1480E	SCN2A_uc002udd.2_Missense_Mutation_p.K1480E|SCN2A_uc002ude.2_Missense_Mutation_p.K1480E	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1480	III.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	CAACCAACAGAAAAAGAAGAT	0.289000												
TTC21B	79809	broad.mit.edu	37	2	166797624	166797624	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:166797624A>C	uc002udk.2	-	6	756	c.623T>G	c.(622-624)TTT>TGT	p.F208C	TTC21B_uc002udl.2_Missense_Mutation_p.F208C|uc002udm.1_Intron	NM_024753	NP_079029	Q7Z4L5	TT21B_HUMAN	tetratricopeptide repeat domain 21B	208	TPR 3.					cilium axoneme|cytoplasm|cytoskeleton	binding			ovary(2)|pancreas(2)|breast(1)	5						GAAGCTCGGAAAATTCACGAT	0.413000												
SCN1A	6323	broad.mit.edu	37	2	166901752	166901752	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:166901752T>G	uc010zcz.1	-	10	1481	c.1463A>C	c.(1462-1464)AAG>ACG	p.K488T	SCN1A_uc002udo.3_Missense_Mutation_p.K357T|SCN1A_uc010fpk.2_Missense_Mutation_p.K357T	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	488						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GGAACTCAACTTAGAGGCTTC	0.473000												
XIRP2	129446	broad.mit.edu	37	2	168104634	168104634	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:168104634T>G	uc002udx.2	+	8	6750	c.6732T>G	c.(6730-6732)ACT>ACG	p.T2244T	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.T2069T|XIRP2_uc010fpq.2_Silent_p.T2022T|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2069					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGCGGGAGACTGATGTTCACT	0.378000												
B3GALT1	8708	broad.mit.edu	37	2	168725911	168725911	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:168725911A>C	uc002udz.1	+	2	713	c.362A>C	c.(361-363)AAT>ACT	p.N121T		NM_020981	NP_066191	Q9Y5Z6	B3GT1_HUMAN	UDP-Gal:betaGlcNAc beta	121	Lumenal (Potential).				lipid glycosylation|protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4						CTGGGCAAGAATGCTGATCCT	0.483000												
FASTKD1	79675	broad.mit.edu	37	2	170387195	170387195	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:170387195A>C	uc002uev.3	-	14	2732	c.2344T>G	c.(2344-2346)TTG>GTG	p.L782V	FASTKD1_uc002uew.3_RNA|FASTKD1_uc002uex.3_Missense_Mutation_p.L725V	NM_024622	NP_078898	Q53R41	FAKD1_HUMAN	FAST kinase domains 1	782	RAP.				apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(4)	4						TTTGAATCCAAAAATTCCAAA	0.303000												
AGPS	8540	broad.mit.edu	37	2	178386063	178386063	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:178386063T>C	uc002ull.2	+	18	1811	c.1764T>C	c.(1762-1764)ATT>ATC	p.I588I	AGPS_uc010zfb.1_Silent_p.I498I	NM_003659	NP_003650	O00116	ADAS_HUMAN	alkyldihydroxyacetone phosphate synthase	588					ether lipid biosynthetic process	peroxisomal matrix|peroxisomal membrane|plasma membrane	alkylglycerone-phosphate synthase activity|flavin adenine dinucleotide binding|oxidoreductase activity			ovary(2)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0018)|Epithelial(96;0.00919)|all cancers(119;0.0358)			ACAGGGGAATTAGTGACCCAC	0.373000												
OSBPL6	114880	broad.mit.edu	37	2	179257153	179257153	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:179257153A>C	uc002ulx.2	+	23	2839	c.2461A>C	c.(2461-2463)AAC>CAC	p.N821H	OSBPL6_uc002uly.2_Missense_Mutation_p.N846H|OSBPL6_uc010zfe.1_Missense_Mutation_p.N790H|OSBPL6_uc002ulz.2_Missense_Mutation_p.N785H|OSBPL6_uc002uma.2_Missense_Mutation_p.N825H	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	821					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			CATGCCAACAAACTATGAGCT	0.463000												
TTN	7273	broad.mit.edu	37	2	179449266	179449266	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:179449266A>G	uc010zfg.1	-	260	57532	c.57308T>C	c.(57307-57309)GTC>GCC	p.V19103A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.V12798A|TTN_uc010zfi.1_Missense_Mutation_p.V12731A|TTN_uc010zfj.1_Missense_Mutation_p.V12606A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20030							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCCTTGTTGACTTTGGTGAC	0.408000												
TTN	7273	broad.mit.edu	37	2	179455636	179455636	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:179455636C>T	uc010zfg.1	-	253	53336	c.53112G>A	c.(53110-53112)CCG>CCA	p.P17704P	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.P11399P|TTN_uc010zfi.1_Silent_p.P11332P|TTN_uc010zfj.1_Silent_p.P11207P	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18631							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGGAGGAGACGGAGGACTAA	0.458000												
TTN	7273	broad.mit.edu	37	2	179528765	179528765	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:179528765T>C	uc010zfk.1	-	14	1327	c.779A>G	c.(778-780)AAG>AGG	p.K260R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11472							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.R256_K260>K(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACTTCAGGCTTTTTAGGAGG	0.388000												
TTN	7273	broad.mit.edu	37	2	179576069	179576069	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:179576069T>G	uc010zfg.1	-	94	24386	c.24162A>C	c.(24160-24162)AAA>AAC	p.K8054N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.K4715N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8981							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGGTGGAAGTTTTTGCTCTG	0.338000												
TTN	7273	broad.mit.edu	37	2	179577516	179577516	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:179577516A>C	uc010zfg.1	-	91	23728	c.23504T>G	c.(23503-23505)TTC>TGC	p.F7835C	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.F4496C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8762							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTACATCGAACAACTCCAG	0.423000												
TTN	7273	broad.mit.edu	37	2	179577970	179577970	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:179577970T>C	uc010zfg.1	-	90	23383	c.23159A>G	c.(23158-23160)AAT>AGT	p.N7720S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.N4381S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8647							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTGATCTCATTTCCTTCATG	0.433000												
TTN	7273	broad.mit.edu	37	2	179595420	179595420	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:179595420G>T	uc010zfg.1	-	58	14332	c.14108C>A	c.(14107-14109)CCC>CAC	p.P4703H	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P1364H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5630							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGCTTATGGGATGTGACCC	0.378000												
TTN	7273	broad.mit.edu	37	2	179610355	179610355	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:179610355T>G	uc002unb.2	-	46	16996	c.16772A>C	c.(16771-16773)AAA>ACA	p.K5591T	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATTCCTGATTTGTTTGTAGC	0.383000												
TTN	7273	broad.mit.edu	37	2	179639750	179639750	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:179639750A>T	uc010zfg.1	-	29	6912	c.6688T>A	c.(6688-6690)TTC>ATC	p.F2230I	TTN_uc010zfh.1_Missense_Mutation_p.F2184I|TTN_uc010zfi.1_Missense_Mutation_p.F2184I|TTN_uc010zfj.1_Missense_Mutation_p.F2184I|TTN_uc002unb.2_Missense_Mutation_p.F2230I|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2230							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGGAGAGGAAGTGAACCTTT	0.388000												
TTN	7273	broad.mit.edu	37	2	179641097	179641097	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:179641097T>G	uc010zfg.1	-	28	5718	c.5494A>C	c.(5494-5496)ACA>CCA	p.T1832P	TTN_uc010zfh.1_Missense_Mutation_p.T1786P|TTN_uc010zfi.1_Missense_Mutation_p.T1786P|TTN_uc010zfj.1_Missense_Mutation_p.T1786P|TTN_uc002unb.2_Missense_Mutation_p.T1832P|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1832							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGATCTGTTGTTACACCTGTA	0.458000												
CWC22	57703	broad.mit.edu	37	2	180835492	180835492	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:180835492T>G	uc010frh.1	-	10	1332	c.1032A>C	c.(1030-1032)AAA>AAC	p.K344N	CWC22_uc002unp.2_Missense_Mutation_p.K344N	NM_020943	NP_065994	Q9HCG8	CWC22_HUMAN	CWC22 spliceosome-associated protein homolog	344	MIF4G.					catalytic step 2 spliceosome	protein binding|RNA binding				0						TGAATCCATCTTTCCGTACAG	0.383000												
ZSWIM2	151112	broad.mit.edu	37	2	187693238	187693238	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:187693238T>G	uc002upu.1	-	9	1415	c.1375A>C	c.(1375-1377)AAA>CAA	p.K459Q		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	459					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			TAGGCATCTTTTGGGCTTTGA	0.284000												
ANKAR	150709	broad.mit.edu	37	2	190554291	190554291	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:190554291A>C	uc002uqw.1	+	2	427	c.427A>C	c.(427-429)ATC>CTC	p.I143L	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqv.1_Missense_Mutation_p.I214L	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	214						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			CTTTAATGAAATCTATGATGA	0.303000												
ANKAR	150709	broad.mit.edu	37	2	190554626	190554626	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:190554626T>G	uc002uqw.1	+	2	762	c.762T>G	c.(760-762)TTT>TTG	p.F254L	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqv.1_Missense_Mutation_p.F325L	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	325	Helical; (Potential).					integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			TGATTCCATTTCTACTGAGTT	0.274000												
ANKAR	150709	broad.mit.edu	37	2	190585496	190585496	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:190585496T>G	uc002uqw.1	+	11	2405	c.2405T>G	c.(2404-2406)TTT>TGT	p.F802C	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqx.1_RNA	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	873	ARM 4.					integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			CTTATCAGATTTCTGAGTTCT	0.343000												
PMS1	5378	broad.mit.edu	37	2	190719033	190719033	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:190719033T>C	uc002urh.3	+	9	1564	c.1035T>C	c.(1033-1035)TCT>TCC	p.S345S	PMS1_uc010zga.1_Silent_p.S306S|PMS1_uc010zgb.1_Silent_p.S284S|PMS1_uc002urk.3_Silent_p.S306S|PMS1_uc002uri.3_Silent_p.S345S|PMS1_uc010zgc.1_Silent_p.S169S|PMS1_uc010zgd.1_Silent_p.S169S|PMS1_uc002urj.2_RNA|PMS1_uc010fry.1_Silent_p.S306S|PMS1_uc010frz.2_Intron|PMS1_uc002url.2_Silent_p.S130S|PMS1_uc002urm.2_RNA|PMS1_uc002urn.1_Silent_p.S13S	NM_000534	NP_000525	P54277	PMS1_HUMAN	postmeiotic segregation 1 isoform a	345					mismatch repair|reciprocal meiotic recombination	MutLalpha complex	ATP binding|ATPase activity|mismatched DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0013)|Epithelial(96;0.0263)|all cancers(119;0.0751)			GTACAAATTCTTATGAAAATA	0.318000			Mis|N			colorectal|endometrial|ovarian		Direct_reversal_of_damage|MMR				
PMS1	5378	broad.mit.edu	37	2	190719376	190719376	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:190719376A>C	uc002urh.3	+	9	1907	c.1378A>C	c.(1378-1380)AGT>CGT	p.S460R	PMS1_uc010zga.1_Missense_Mutation_p.S421R|PMS1_uc010zgb.1_Missense_Mutation_p.S399R|PMS1_uc002urk.3_Missense_Mutation_p.S421R|PMS1_uc002uri.3_Missense_Mutation_p.S460R|PMS1_uc010zgc.1_Missense_Mutation_p.S284R|PMS1_uc010zgd.1_Missense_Mutation_p.S284R|PMS1_uc002urj.2_RNA|PMS1_uc010fry.1_Missense_Mutation_p.S421R|PMS1_uc010frz.2_Intron|PMS1_uc002url.2_Missense_Mutation_p.S245R|PMS1_uc002urm.2_RNA|PMS1_uc002urn.1_Missense_Mutation_p.S128R	NM_000534	NP_000525	P54277	PMS1_HUMAN	postmeiotic segregation 1 isoform a	460					mismatch repair|reciprocal meiotic recombination	MutLalpha complex	ATP binding|ATPase activity|mismatched DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0013)|Epithelial(96;0.0263)|all cancers(119;0.0751)			TTGTTTTATAAGTTCCGTTAA	0.358000			Mis|N			colorectal|endometrial|ovarian		Direct_reversal_of_damage|MMR				
SLC39A10	57181	broad.mit.edu	37	2	196545252	196545252	+	Silent	SNP	G	G	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:196545252G>T	uc002utg.3	+	2	700	c.486G>T	c.(484-486)GTG>GTT	p.V162V	SLC39A10_uc002uth.3_Silent_p.V162V|SLC39A10_uc010zgp.1_Intron	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	162	His-rich.				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			CAGTTGAAGTGTCTGTAAAAT	0.363000												
PGAP1	80055	broad.mit.edu	37	2	197712683	197712683	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:197712683T>G	uc002utw.2	-	21	2054	c.1940A>C	c.(1939-1941)AAG>ACG	p.K647T	PGAP1_uc002utx.2_Missense_Mutation_p.K473T|PGAP1_uc002uty.1_3'UTR|PGAP1_uc010fsi.2_5'Flank	NM_024989	NP_079265	Q75T13	PGAP1_HUMAN	GPI deacylase	647	Helical; (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|intracellular protein transport|myo-inositol transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	nuclease activity|phosphoric ester hydrolase activity			ovary(3)|central_nervous_system(1)	4						CAACAGAAACTTAATGATAAT	0.274000												
BOLL	66037	broad.mit.edu	37	2	198641795	198641795	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:198641795T>G	uc002uus.2	-	4	574	c.264A>C	c.(262-264)AAA>AAC	p.K88N	BOLL_uc002uur.2_Missense_Mutation_p.K94N|BOLL_uc002uut.2_Missense_Mutation_p.K100N|BOLL_uc010zha.1_Intron|BOLL_uc002uuu.1_Missense_Mutation_p.K94N	NM_033030	NP_149019	Q8N9W6	BOLL_HUMAN	boule isoform 2	88	RRM.				cell differentiation|meiosis|multicellular organismal development|positive regulation of translational initiation|spermatogenesis	cytoplasm	nucleotide binding|protein binding|RNA binding|translation activator activity			ovary(2)	2						CTTGTAAAATTTTTTGTGCAT	0.254000												
TRAK2	66008	broad.mit.edu	37	2	202245793	202245793	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:202245793T>A	uc002uyb.3	-	16	2664	c.2218A>T	c.(2218-2220)AGC>TGC	p.S740C		NM_015049	NP_055864	O60296	TRAK2_HUMAN	trafficking protein, kinesin binding 2	740				Missing (in Ref. 2).		early endosome|plasma membrane	GABA receptor binding				0						TTGGCCAAGCTCATGGTGCTA	0.512000												
ABI2	10152	broad.mit.edu	37	2	204291994	204291994	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:204291994T>G	uc002vaa.2	+	11	1696	c.1461T>G	c.(1459-1461)GGT>GGG	p.G487G	ABI2_uc002uzz.2_Silent_p.G449G|ABI2_uc010zih.1_Silent_p.G135G|ABI2_uc010zii.1_Silent_p.G481G|ABI2_uc010zij.1_Silent_p.G364G|ABI2_uc002vab.2_Silent_p.G375G|ABI2_uc010zik.1_Silent_p.G212G|ABI2_uc010zil.1_Silent_p.G351G|ABI2_uc010zim.1_Silent_p.G300G|ABI2_uc002vac.2_Silent_p.G273G|ABI2_uc010zin.1_Silent_p.G164G	NM_005759	NP_005750	Q9NYB9	ABI2_HUMAN	abl interactor 2	487	SH3.				actin polymerization or depolymerization|cell migration|peptidyl-tyrosine phosphorylation	cytoskeleton|cytosol|filopodium|lamellipodium	cytoskeletal adaptor activity|DNA binding|kinase binding|proline-rich region binding|SH3 domain binding|ubiquitin protein ligase binding				0						ATGACGATGGTTGGTATGAGG	0.418000												
MDH1B	130752	broad.mit.edu	37	2	207621681	207621681	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:207621681T>A	uc002vbs.2	-	4	409	c.354A>T	c.(352-354)AAA>AAT	p.K118N	MDH1B_uc010ziw.1_RNA|MDH1B_uc010fui.2_Missense_Mutation_p.K118N|MDH1B_uc010fuj.2_Missense_Mutation_p.K20N|MDH1B_uc002vbt.2_RNA	NM_001039845	NP_001034934	Q5I0G3	MDH1B_HUMAN	malate dehydrogenase 1B, NAD (soluble)	118					carbohydrate metabolic process|malate metabolic process|tricarboxylic acid cycle		binding|malate dehydrogenase activity			ovary(3)|kidney(1)	4				LUSC - Lung squamous cell carcinoma(261;0.0763)|Epithelial(149;0.131)|Lung(261;0.145)		CCTCCTGCTCTTTTTCTATAT	0.438000												
PIKFYVE	200576	broad.mit.edu	37	2	209179076	209179076	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:209179076G>A	uc002vcz.2	+	14	1913	c.1755G>A	c.(1753-1755)TTG>TTA	p.L585L	PIKFYVE_uc010fun.1_Silent_p.L266L|PIKFYVE_uc002vcy.1_Silent_p.L529L	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	585					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						TCACACCTTTGGGCTGGCATC	0.388000												
SPAG16	79582	broad.mit.edu	37	2	214794832	214794832	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:214794832T>C	uc002veq.2	+	12	1455	c.1363T>C	c.(1363-1365)TCA>CCA	p.S455P	SPAG16_uc010fuz.1_Missense_Mutation_p.S306P|SPAG16_uc002ver.2_Missense_Mutation_p.S401P|SPAG16_uc010zjk.1_Missense_Mutation_p.S361P	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	455	WD 3.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		GGCTTCCTCCTCACTGGATAA	0.433000												
TNS1	7145	broad.mit.edu	37	2	218712817	218712817	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:218712817T>C	uc002vgt.2	-	17	2446	c.2048A>G	c.(2047-2049)CAG>CGG	p.Q683R	TNS1_uc002vgr.2_Missense_Mutation_p.Q683R|TNS1_uc002vgs.2_Missense_Mutation_p.Q683R|TNS1_uc010zjv.1_Missense_Mutation_p.Q683R|TNS1_uc010fvj.1_Missense_Mutation_p.Q751R|TNS1_uc010fvk.1_Missense_Mutation_p.Q808R|TNS1_uc010fvi.1_Missense_Mutation_p.Q370R	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	683						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		TGCCAATGGCTGAGGGCTGGG	0.512000												
TNS1	7145	broad.mit.edu	37	2	218713280	218713280	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:218713280T>C	uc002vgt.2	-	17	1983	c.1585A>G	c.(1585-1587)AGT>GGT	p.S529G	TNS1_uc002vgr.2_Missense_Mutation_p.S529G|TNS1_uc002vgs.2_Missense_Mutation_p.S529G|TNS1_uc010zjv.1_Missense_Mutation_p.S529G|TNS1_uc010fvj.1_Missense_Mutation_p.S597G|TNS1_uc010fvk.1_Missense_Mutation_p.S654G|TNS1_uc010fvi.1_Missense_Mutation_p.S216G	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	529						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		CCCCCCTCACTGGTGTTGGTG	0.602000												
CXCR1	3577	broad.mit.edu	37	2	219029780	219029780	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:219029780A>C	uc002vhc.2	-	2	274	c.155T>G	c.(154-156)CTG>CGG	p.L52R		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	52	Helical; Name=1; (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						CAGCAGGCTCAGCAGGAACAC	0.542000												
PLCD4	84812	broad.mit.edu	37	2	219483332	219483332	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:219483332A>C	uc002vij.1	+	4	407	c.212A>C	c.(211-213)AAT>ACT	p.N71T	PLCD4_uc010zkj.1_Missense_Mutation_p.N18T|PLCD4_uc002vik.1_5'Flank|PLCD4_uc010zkk.1_5'Flank	NM_032726	NP_116115	Q9BRC7	PLCD4_HUMAN	phospholipase C, delta 4	71	PH.				intracellular signal transduction|lipid catabolic process	endoplasmic reticulum|membrane|nucleus	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)	3		Renal(207;0.0915)		Epithelial(149;5.11e-07)|all cancers(144;0.000104)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		ACAATACGTAATGGCCATGAT	0.542000												
GLB1L	79411	broad.mit.edu	37	2	220101987	220101987	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:220101987A>G	uc002vkm.2	-	17	2011	c.1772T>C	c.(1771-1773)TTC>TCC	p.F591S	GLB1L_uc002vkk.2_Missense_Mutation_p.F348S|GLB1L_uc010zkx.1_Missense_Mutation_p.F501S|GLB1L_uc002vkn.2_Missense_Mutation_p.F591S	NM_024506	NP_078782	Q6UWU2	GLB1L_HUMAN	galactosidase, beta 1-like precursor	591					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds				0		all_lung(227;1.19e-05)|Lung NSC(271;2.76e-05)|Medulloblastoma(418;0.0208)|Esophageal squamous(248;0.0559)		Epithelial(149;1.3e-11)|all cancers(144;2.07e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AAACAGCAGGAATCTTGGCAC	0.512000												
EPHA4	2043	broad.mit.edu	37	2	222428958	222428958	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:222428958T>A	uc002vmq.2	-	3	358	c.316A>T	c.(316-318)AGG>TGG	p.R106W	EPHA4_uc002vmr.2_Missense_Mutation_p.R106W|EPHA4_uc010zlm.1_Missense_Mutation_p.R47W|EPHA4_uc010zln.1_Missense_Mutation_p.R106W	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	106	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		TTGCAGTCCCTCAAGGTGAAT	0.473000												
SCG2	7857	broad.mit.edu	37	2	224463728	224463728	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:224463728T>G	uc002vnm.2	-	2	406	c.273A>C	c.(271-273)AAA>AAC	p.K91N		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	91					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		CGCCATTTTCTTTTTGCTGAA	0.453000												
SLC19A3	80704	broad.mit.edu	37	2	228560750	228560750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:228560750G>A	uc002vpi.2	-	4	1116	c.1027C>T	c.(1027-1029)CTT>TTT	p.L343F	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Missense_Mutation_p.L339F	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	343	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	TCTCCCAGAAGGTCCCAGTTG	0.463000												
SPHKAP	80309	broad.mit.edu	37	2	228846499	228846499	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:228846499G>T	uc002vpq.2	-	12	5084	c.5037C>A	c.(5035-5037)TGC>TGA	p.C1679*	SPHKAP_uc002vpp.2_Nonsense_Mutation_p.C1650*|SPHKAP_uc010zlx.1_3'UTR	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1679						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CATGCATTTTGCAGTACTGGA	0.463000												
SPHKAP	80309	broad.mit.edu	37	2	228881411	228881411	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:228881411A>C	uc002vpq.2	-	7	4206	c.4159T>G	c.(4159-4161)TTG>GTG	p.L1387V	SPHKAP_uc002vpp.2_Missense_Mutation_p.L1387V|SPHKAP_uc010zlx.1_Missense_Mutation_p.L1387V	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1387						cytoplasm	protein binding	p.L1387L(1)		skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GTTTTGCTCAAAGATGACACT	0.478000												
FBXO36	130888	broad.mit.edu	37	2	230861562	230861562	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:230861562T>C	uc002vqa.2	+	3	324	c.301T>C	c.(301-303)TTG>CTG	p.L101L	FBXO36_uc002vqb.2_Silent_p.L70L|FBXO36_uc010fxi.1_Silent_p.L101L|FBXO36_uc002vqc.2_RNA	NM_174899	NP_777559	Q8NEA4	FBX36_HUMAN	F-box protein 36	101	F-box.									ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0179)|Lung NSC(271;0.0804)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;7.56e-14)|all cancers(144;7.74e-11)|Lung(119;0.00488)|LUSC - Lung squamous cell carcinoma(224;0.008)		CTCAGACGATTTGCTCCTGAC	0.368000												
SLC16A14	151473	broad.mit.edu	37	2	230910769	230910769	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:230910769A>C	uc002vqd.1	-	4	1436	c.1073T>G	c.(1072-1074)ATT>AGT	p.I358S	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Missense_Mutation_p.I358S|SLC16A14_uc002vqf.2_Missense_Mutation_p.I358S	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	358	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		TATTGCTATAATTGACGTCAG	0.438000												
TRAF3IP1	26146	broad.mit.edu	37	2	239234574	239234574	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:239234574A>G	uc002vye.2	+	3	436	c.317A>G	c.(316-318)GAG>GGG	p.E106G	TRAF3IP1_uc002vyf.2_Missense_Mutation_p.E106G	NM_015650	NP_056465	Q8TDR0	MIPT3_HUMAN	TNF receptor-associated factor 3 interacting	106	Abolishes microtubules-binding when missing.					cytoplasm|cytoskeleton	protein binding			ovary(1)	1		all_epithelial(40;3.22e-10)|Breast(86;0.000523)|Renal(207;0.00571)|Ovarian(221;0.156)|all_hematologic(139;0.182)		Epithelial(121;9.92e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.85e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.01e-07)|BRCA - Breast invasive adenocarcinoma(100;7.72e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0184)		AGAACAAACGAGCTGCTCCAG	0.488000												
SNED1	25992	broad.mit.edu	37	2	241992724	241992724	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:241992724T>G	uc002wah.1	+	16	2238	c.2238T>G	c.(2236-2238)AGT>AGG	p.S746R		NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	746	Sushi.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		GTGTCTGGAGTGAGCCTCCCC	0.692000												
ZNF343	79175	broad.mit.edu	37	20	2463832	2463832	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:2463832A>G	uc002wge.1	-	6	2263	c.1775T>C	c.(1774-1776)CTC>CCC	p.L592P	ZNF343_uc010gao.1_Missense_Mutation_p.L592P|ZNF343_uc002wgd.1_Missense_Mutation_p.L502P	NM_024325	NP_077301	Q6P1L6	ZN343_HUMAN	zinc finger protein 343	592	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GTGTCTGATGAGATTTGACTT	0.512000												
C20orf194	25943	broad.mit.edu	37	20	3278685	3278685	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:3278685A>C	uc002wii.2	-	22	1971	c.1920T>G	c.(1918-1920)TTT>TTG	p.F640L	C20orf194_uc002wij.3_Missense_Mutation_p.F379L|C20orf194_uc002wik.2_Missense_Mutation_p.F314L	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	640											0						CCTCTGAGTAAAATGCTTGGT	0.383000												
SIGLEC1	6614	broad.mit.edu	37	20	3678698	3678698	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:3678698C>T	uc002wja.2	-	8	1869	c.1869G>A	c.(1867-1869)TTG>TTA	p.L623L	SIGLEC1_uc002wiz.3_Silent_p.L623L	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	623	Ig-like C2-type 6.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CCACACGGCACAAAAGGAGGC	0.662000												
PRND	23627	broad.mit.edu	37	20	4705711	4705711	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:4705711T>C	uc002wkz.2	+	2	585	c.514T>C	c.(514-516)TGG>CGG	p.W172R		NM_012409	NP_036541	Q9UKY0	PRND_HUMAN	prion-like protein doppel preproprotein	172					protein homooligomerization	anchored to membrane|plasma membrane					0						GGCTTTGATCTGGCTCACGGT	0.587000												
TRMT6	51605	broad.mit.edu	37	20	5924813	5924813	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:5924813T>G	uc002wmh.1	-	4	575	c.453A>C	c.(451-453)AAA>AAC	p.K151N	TRMT6_uc010zra.1_5'UTR|TRMT6_uc010gbn.1_5'UTR|TRMT6_uc010gbo.1_RNA	NM_015939	NP_057023	Q9UJA5	TRM6_HUMAN	tRNA methyltransferase 6	151					regulation of translational initiation|tRNA processing	nucleus	protein binding|translation initiation factor activity			pancreas(1)	1						CTTACTTTTTTTTCTTCTTTT	0.204000												
SPTLC3	55304	broad.mit.edu	37	20	13140768	13140768	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:13140768A>G	uc002wod.1	+	11	1823	c.1534A>G	c.(1534-1536)ATG>GTG	p.M512V		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	512					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	TACCCGGGAGATGTTAGACAC	0.527000												
PCSK2	5126	broad.mit.edu	37	20	17410104	17410104	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:17410104A>C	uc002wpm.2	+	7	965	c.645A>C	c.(643-645)GAA>GAC	p.E215D	PCSK2_uc002wpl.2_Missense_Mutation_p.E196D|PCSK2_uc010zrm.1_Missense_Mutation_p.E180D	NM_002594	NP_002585	P16519	NEC2_HUMAN	proprotein convertase subtilisin/kexin type 2	215	Catalytic.				enkephalin processing|insulin processing|islet amyloid polypeptide processing	extracellular space|membrane|soluble fraction|transport vesicle	serine-type endopeptidase activity			ovary(3)|central_nervous_system(2)|large_intestine(1)|pancreas(1)	7					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GTGCAGGAGAAGTTTCTGCTG	0.473000												
RRBP1	6238	broad.mit.edu	37	20	17607995	17607995	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:17607995A>G	uc002wpv.1	-	12	2016	c.1662T>C	c.(1660-1662)ACT>ACC	p.T554T	RRBP1_uc002wpu.2_Silent_p.T328T|RRBP1_uc002wpw.1_Silent_p.T554T|RRBP1_uc010gcl.1_Silent_p.T328T|RRBP1_uc010gcm.1_Intron	NM_001042576	NP_001036041	Q9P2E9	RRBP1_HUMAN	ribosome binding protein 1	987	Cytoplasmic (Potential).				protein transport|translation|transmembrane transport	integral to endoplasmic reticulum membrane|ribosome	receptor activity			ovary(1)	1						CAGCTTACCGAGTCTGCTGCT	0.632000												
SEC23B	10483	broad.mit.edu	37	20	18492909	18492909	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:18492909T>C	uc002wqz.1	+	3	705	c.262T>C	c.(262-264)TGT>CGT	p.C88R	SEC23B_uc002wra.1_Missense_Mutation_p.C88R|SEC23B_uc002wrb.1_Missense_Mutation_p.C88R|SEC23B_uc010zsb.1_Missense_Mutation_p.C88R|SEC23B_uc002wrc.1_Missense_Mutation_p.C88R	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B	88					ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						CTGTAATTTCTGTTTTCAAAG	0.204000												
C20orf79	140856	broad.mit.edu	37	20	18794785	18794785	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:18794785C>T	uc002wrk.2	+	1	416	c.326C>T	c.(325-327)ACA>ATA	p.T109I	uc002wrj.1_Intron	NM_178483	NP_848578	Q9UJQ7	CT079_HUMAN	hypothetical protein LOC140856	109	SCP2.						sterol binding			skin(3)	3						ACTGTCTTTACAATCCCGGAG	0.498000												
CRNKL1	51340	broad.mit.edu	37	20	20028462	20028462	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:20028462T>G	uc002wrs.2	-	6	1084	c.1052A>C	c.(1051-1053)AAC>ACC	p.N351T	CRNKL1_uc002wrt.1_Missense_Mutation_p.N339T	NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	351	HAT 4.				spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						CAGCTCAAAGTTGATGTAGGA	0.532000												
RALGAPA2	57186	broad.mit.edu	37	20	20527423	20527423	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:20527423A>C	uc002wrz.2	-	24	3353	c.3210T>G	c.(3208-3210)GGT>GGG	p.G1070G	RALGAPA2_uc010gcx.2_Silent_p.G774G|RALGAPA2_uc010zsg.1_Silent_p.G518G	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1070					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						AGCCAGGAAAACCCAGGGAGA	0.463000												
XRN2	22803	broad.mit.edu	37	20	21314715	21314715	+	Splice_Site	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:21314715G>A	uc002wsf.1	+	13	1221	c.1126_splice	c.e13-1	p.G376_splice	XRN2_uc002wsg.1_Splice_Site_p.G300_splice|XRN2_uc010zsk.1_Splice_Site_p.G322_splice	NM_012255	NP_036387	Q9H0D6	XRN2_HUMAN	5'-3' exoribonuclease 2						cell growth|DNA catabolic process, exonucleolytic|mRNA processing|regulation of transcription, DNA-dependent|RNA catabolic process|spermatogenesis|transcription termination, DNA-dependent	nucleolus	5'-3' exoribonuclease activity|nucleic acid binding|protein binding|zinc ion binding			skin(1)	1						ATCACTTACAGGGTTACCTTA	0.328000												
ACSS1	84532	broad.mit.edu	37	20	24989958	24989958	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:24989958T>A	uc002wub.2	-	13	2716	c.1838A>T	c.(1837-1839)AAG>ATG	p.K613M	ACSS1_uc002wuc.2_Missense_Mutation_p.K611M|ACSS1_uc010gdc.2_Missense_Mutation_p.K408M|ACSS1_uc002wud.1_RNA|ACSS1_uc002wua.2_Missense_Mutation_p.K530M	NM_032501	NP_115890	Q9NUB1	ACS2L_HUMAN	acyl-CoA synthetase short-chain family member 1	613					acetyl-CoA biosynthetic process|ethanol oxidation|xenobiotic metabolic process	mitochondrial matrix	acetate-CoA ligase activity|AMP binding|ATP binding|protein binding			ovary(1)|skin(1)	2					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CACCATGGACTTGAGCTCCTG	0.512000												
NINL	22981	broad.mit.edu	37	20	25478915	25478915	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:25478915A>G	uc002wux.1	-	9	1174	c.1100T>C	c.(1099-1101)CTC>CCC	p.L367P	NINL_uc010gdn.1_Missense_Mutation_p.L367P|NINL_uc010gdo.1_Missense_Mutation_p.L150P|NINL_uc010ztf.1_Missense_Mutation_p.L383P	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	367					G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						CACTGTCATGAGCTCGTTGTC	0.617000												
NINL	22981	broad.mit.edu	37	20	25478973	25478973	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:25478973A>T	uc002wux.1	-	9	1116	c.1042T>A	c.(1042-1044)TTC>ATC	p.F348I	NINL_uc010gdn.1_Missense_Mutation_p.F348I|NINL_uc010gdo.1_Missense_Mutation_p.F131I|NINL_uc010ztf.1_Missense_Mutation_p.F364I	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	348					G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TCCACGCTGAAGTCCAGGCTC	0.617000												
DEFB124	245937	broad.mit.edu	37	20	30053417	30053417	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:30053417A>C	uc002wvz.1	-	2	108	c.108T>G	c.(106-108)ACT>ACG	p.T36T		NM_001037500	NP_001032589	Q8NES8	DB124_HUMAN	beta-defensin 124 precursor	36					defense response to bacterium	extracellular region					0	Lung NSC(7;0.000139)|all_lung(7;0.000197)|all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			TTGTGCAGTAAGTTTGGCAGG	0.527000												
ASXL1	171023	broad.mit.edu	37	20	31022897	31022897	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:31022897T>G	uc002wxs.2	+	12	2808	c.2382T>G	c.(2380-2382)ACT>ACG	p.T794T	ASXL1_uc010geb.2_Silent_p.T685T	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	794					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						CTGGCACCACTTCCTGGGAAA	0.507000			F|N|Mis		MDS|CMML							
BPIL3	128859	broad.mit.edu	37	20	31627238	31627238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:31627238A>G	uc010zuc.1	+	10	986	c.986A>G	c.(985-987)AAG>AGG	p.K329R	BPIL3_uc010zud.1_Missense_Mutation_p.K268R	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	329						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						AAGACAGGCAAGAGCCTGCTG	0.532000												
C20orf186	149954	broad.mit.edu	37	20	31671658	31671658	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:31671658A>C	uc010zue.1	+	3	670	c.655A>C	c.(655-657)AGC>CGC	p.S219R		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	219	Gly-rich.					cytoplasm|extracellular region	lipid binding				0						TGGCATCCTCAGCACTGTGCA	0.632000												
PLUNC	51297	broad.mit.edu	37	20	31825526	31825526	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:31825526A>C	uc002wyv.2	+	2	79	c.9A>C	c.(7-9)CAA>CAC	p.Q3H	PLUNC_uc002wyt.3_Missense_Mutation_p.Q3H|PLUNC_uc002wyu.3_Missense_Mutation_p.Q3H	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	3					innate immune response	extracellular region	lipid binding				0						AGATGTTTCAAACTGGGGGCC	0.547000												
PLUNC	51297	broad.mit.edu	37	20	31829261	31829261	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:31829261T>G	uc002wyv.2	+	6	722	c.652T>G	c.(652-654)TTG>GTG	p.L218V	PLUNC_uc002wyt.3_Missense_Mutation_p.L218V|PLUNC_uc002wyu.3_Missense_Mutation_p.L218V	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	218					innate immune response	extracellular region	lipid binding				0						CCTGCCTGAGTTGGTTCAGGG	0.517000												
MMP24	10893	broad.mit.edu	37	20	33859460	33859460	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:33859460A>C	uc002xbu.2	+	8	1425	c.1422A>C	c.(1420-1422)GAA>GAC	p.E474D	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	474	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			TGCCCCGTGAAGGCATTGACA	0.617000												
KIAA0406	9675	broad.mit.edu	37	20	36625208	36625208	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:36625208T>C	uc002xhl.2	-	7	3150	c.2941A>G	c.(2941-2943)AAG>GAG	p.K981E	KIAA0406_uc002xhm.2_Missense_Mutation_p.K981E	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	981							binding				0		Myeloproliferative disorder(115;0.00874)				AGCTGCAACTTGAAGGCCAGC	0.592000												
KIAA1755	85449	broad.mit.edu	37	20	36848101	36848101	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:36848101A>C	uc002xhy.1	-	11	2759	c.2487T>G	c.(2485-2487)GCT>GCG	p.A829A	KIAA1755_uc002xhv.1_5'Flank|KIAA1755_uc002xhw.1_5'Flank|KIAA1755_uc002xhx.1_Silent_p.A107A	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	829										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				GGCTGTTGGAAGCGGTGACCA	0.632000												
BPI	671	broad.mit.edu	37	20	36936031	36936031	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:36936031T>A	uc002xib.2	+	2	267	c.205T>A	c.(205-207)TCA>ACA	p.S69T		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	69					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				TCCTGACTACTCAGACAGCTT	0.527000												
PPP1R16B	26051	broad.mit.edu	37	20	37464672	37464672	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:37464672A>C	uc002xje.2	+	2	293	c.104A>C	c.(103-105)AAG>ACG	p.K35T	PPP1R16B_uc010ggc.2_Missense_Mutation_p.K35T	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	35	Potential.				regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CAGCAGCTGAAGAAATGGGCA	0.667000												
MAFB	9935	broad.mit.edu	37	20	39316595	39316595	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:39316595T>C	uc002xji.2	-	1	1282	c.896A>G	c.(895-897)GAG>GGG	p.E299G		NM_005461	NP_005452	Q9Y5Q3	MAFB_HUMAN	transcription factor MAFB	299					negative regulation of erythrocyte differentiation		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding				0		Myeloproliferative disorder(115;0.00878)				GGCGAGTTTCTCGCACTTGAC	0.562000			T	IGH@	MM							
L3MBTL	26013	broad.mit.edu	37	20	42161533	42161533	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:42161533T>G	uc010zwh.1	+	12	1385	c.1339T>G	c.(1339-1341)TTT>GTT	p.F447V	L3MBTL_uc002xkl.2_Missense_Mutation_p.F379V|L3MBTL_uc002xkm.2_Missense_Mutation_p.F379V|L3MBTL_uc010ggl.2_Missense_Mutation_p.F379V|L3MBTL_uc002xkn.1_Missense_Mutation_p.F138V|L3MBTL_uc002xko.2_Missense_Mutation_p.F31V	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	379	MBT 2.|Interaction with monomethylated and dimethylated peptides.			F->A: Abolishes binding to monomethylated and dimethylated peptides. Abolishes binding to p53/TP53 monomethylated at 'Lys-382'.	chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CCTGGTGCACTTTGACAACTG	0.582000												
KCNS1	3787	broad.mit.edu	37	20	43726484	43726484	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:43726484A>C	uc002xnc.2	-	4	1326	c.929T>G	c.(928-930)ATT>AGT	p.I310S	KCNS1_uc002xnd.2_Missense_Mutation_p.I310S	NM_002251	NP_002242	Q96KK3	KCNS1_HUMAN	potassium voltage-gated channel	310	Helical; Name=Segment S3; (Potential).					voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity|protein binding				0		Myeloproliferative disorder(115;0.0122)				CACAGACACAATGTCGATGAG	0.627000												
SEMG2	6407	broad.mit.edu	37	20	43851860	43851860	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:43851860A>C	uc010ggz.2	+	2	1644	c.1587A>C	c.(1585-1587)CAA>CAC	p.Q529H	SEMG2_uc002xnk.2_Missense_Mutation_p.Q529H|SEMG2_uc002xnl.2_Missense_Mutation_p.Q409H	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	529	Repeat-rich region.|3-2.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				AGTCTGGTCAATCTGCAGATA	0.393000												
NEURL2	140825	broad.mit.edu	37	20	44519175	44519175	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:44519175A>C	uc002xqg.1	-	1	727	c.456T>G	c.(454-456)TTT>TTG	p.F152L	C20orf165_uc002xqf.2_5'Flank|CTSA_uc002xqh.2_5'Flank|CTSA_uc002xqj.3_5'Flank|CTSA_uc002xqi.2_5'Flank|CTSA_uc010zxi.1_5'Flank|CTSA_uc002xqk.3_5'Flank	NM_080749	NP_542787	Q9BR09	NEUL2_HUMAN	neuralized-like protein 2	152	NHR.				intracellular signal transduction						0		Myeloproliferative disorder(115;0.0122)				GGGGAATGCGAAACTGCTCAA	0.692000												
PLTP	5360	broad.mit.edu	37	20	44527644	44527644	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:44527644T>C	uc002xqn.1	-	16	1498	c.1418A>G	c.(1417-1419)GAG>GGG	p.E473G	PLTP_uc002xql.1_Missense_Mutation_p.E385G|PLTP_uc002xqm.1_Missense_Mutation_p.E493G|PLTP_uc002xqo.1_Missense_Mutation_p.E421G|PLTP_uc002xqp.1_Missense_Mutation_p.E468G|PLTP_uc002xqq.1_Missense_Mutation_p.E442G|PLTP_uc010zxj.1_Missense_Mutation_p.E378G|PLTP_uc010ghj.1_Missense_Mutation_p.E426G	NM_006227	NP_006218	P55058	PLTP_HUMAN	phospholipid transfer protein isoform a	473					cellular lipid metabolic process|lipid transport	extracellular region	lipid binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CCGGTTCTTCTCAATCACCTC	0.567000												
CDH22	64405	broad.mit.edu	37	20	44815501	44815501	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:44815501G>A	uc002xrm.2	-	8	1910	c.1509C>T	c.(1507-1509)TAC>TAT	p.Y503Y	CDH22_uc010ghk.1_Silent_p.Y503Y	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	503	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				CAGCTGCCTCGTAGGGTGTGG	0.592000												
PARD6B	84612	broad.mit.edu	37	20	49366531	49366531	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:49366531T>G	uc002xvo.2	+	3	868	c.625T>G	c.(625-627)TTA>GTA	p.L209V		NM_032521	NP_115910	Q9BYG5	PAR6B_HUMAN	PAR-6 beta	209	PDZ.|Interaction with PARD3 and CDC42 (By similarity).				axonogenesis|cell cycle|cell division|establishment or maintenance of cell polarity|protein complex assembly|regulation of cell migration|tight junction assembly	cytosol|tight junction	protein binding			kidney(1)	1						TACAGGACTATTAGCTGTTAA	0.433000												
KCNG1	3755	broad.mit.edu	37	20	49621273	49621273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:49621273T>C	uc002xwa.3	-	3	1140	c.845A>G	c.(844-846)GAG>GGG	p.E282G		NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	282	Helical; Name=Segment S2; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						CAGGAGGAACTCCAGGGAGAA	0.642000												
SALL4	57167	broad.mit.edu	37	20	50407880	50407880	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:50407880T>G	uc002xwh.3	-	2	1243	c.1142A>C	c.(1141-1143)AAG>ACG	p.K381T	SALL4_uc010gii.2_Missense_Mutation_p.K381T|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	381					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ACACTTGTGCTTGTAGAGGGC	0.547000												
ZNF217	7764	broad.mit.edu	37	20	52193563	52193563	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:52193563A>C	uc002xwq.3	-	3	2011	c.1740T>G	c.(1738-1740)CCT>CCG	p.P580P	ZNF217_uc010gij.1_Silent_p.P572P	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	580					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			GAAAAACAGAAGGCATCTCCT	0.438000												
ZNF217	7764	broad.mit.edu	37	20	52199470	52199470	+	Translation_Start_Site	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:52199470A>C	uc002xwq.3	-	1	167	c.-104T>G	c.(-106--102)ATTTG>ATGTG		ZNF217_uc010gij.1_Translation_Start_Site	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217						negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			AACCAGAGCAAATATTTATTA	0.403000												
C20orf43	51507	broad.mit.edu	37	20	55093316	55093316	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:55093316T>G	uc002xxt.2	+	9	1023	c.916T>G	c.(916-918)TTC>GTC	p.F306V	C20orf43_uc010zzf.1_Missense_Mutation_p.F336V|C20orf43_uc002xxu.2_Missense_Mutation_p.F305V|C20orf43_uc002xxv.2_3'UTR|GCNT7_uc010zzg.1_Intron	NM_016407	NP_057491	Q9BY42	CT043_HUMAN	hypothetical protein LOC51507	306										ovary(1)	1			Colorectal(105;0.202)			GTCCTACTGCTTCTGAAGCCC	0.582000												
BMP7	655	broad.mit.edu	37	20	55758840	55758840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:55758840C>T	uc010gip.1	-	4	1425	c.896G>A	c.(895-897)CGC>CAC	p.R299H	BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Missense_Mutation_p.R299H	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	299					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			GTTCTGGCTGCGCTGTTTGCT	0.637000												
RAE1	8480	broad.mit.edu	37	20	55948568	55948568	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:55948568A>C	uc002xyg.2	+	9	1021	c.680A>C	c.(679-681)AAG>ACG	p.K227T	RAE1_uc010gis.1_Missense_Mutation_p.K180T|RAE1_uc010git.1_Missense_Mutation_p.K227T|RAE1_uc002xyh.2_Missense_Mutation_p.K227T|RAE1_uc002xyi.2_Missense_Mutation_p.K227T	NM_003610	NP_003601	P78406	RAE1L_HUMAN	RAE1 (RNA export 1, S.pombe) homolog	227					carbohydrate metabolic process|glucose transport|mRNA export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|cytoskeleton|nuclear outer membrane|nuclear pore	microtubule binding|RNA binding				0	Lung NSC(12;0.00263)|all_lung(29;0.00828)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;3.7e-14)|Epithelial(14;1.07e-09)|all cancers(14;1.11e-08)			AAACAGAACAAGCCTACTGGT	0.408000												
APCDD1L	164284	broad.mit.edu	37	20	57036043	57036043	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:57036043T>C	uc002xze.1	-	4	1495	c.1309A>G	c.(1309-1311)AGT>GGT	p.S437G	APCDD1L_uc010zzp.1_Missense_Mutation_p.S448G	NM_153360	NP_699191	Q8NCL9	APCDL_HUMAN	adenomatosis polyposis coli down-regulated	437						integral to membrane				ovary(1)	1	Lung NSC(12;0.000856)|all_lung(29;0.0025)		BRCA - Breast invasive adenocarcinoma(13;5.6e-11)|Epithelial(14;1.67e-07)|all cancers(14;1.48e-06)			GTATCGGGACTTGAGCCATCG	0.617000												
LAMA5	3911	broad.mit.edu	37	20	60913663	60913663	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:60913663A>C	uc002ycq.2	-	12	1546	c.1479T>G	c.(1477-1479)AAT>AAG	p.N493K		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	493					angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGCAGTCACAATCTGGAGGGT	0.607000												
C20orf11	54994	broad.mit.edu	37	20	61576119	61576119	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:61576119T>G	uc002ydy.2	+	5	719	c.542T>G	c.(541-543)CTA>CGA	p.L181R		NM_017896	NP_060366	Q9NWU2	CT011_HUMAN	chromosome 20 open reading frame 11	181						nucleus	protein binding				0	Breast(26;5.68e-08)					CAAGCTGTGCTAGATTATGAA	0.408000												
COL20A1	57642	broad.mit.edu	37	20	61938879	61938879	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr20:61938879T>C	uc011aau.1	+	6	634	c.534T>C	c.(532-534)GCT>GCC	p.A178A	COL20A1_uc011aav.1_5'UTR	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	178					cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					CCGTGCCTGCTGACATGGTCT	0.652000												
TPTE	7179	broad.mit.edu	37	21	10944689	10944689	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr21:10944689T>G	uc002yip.1	-	11	913	c.545A>C	c.(544-546)AAG>ACG	p.K182T	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.K164T|TPTE_uc002yir.1_Missense_Mutation_p.K144T|TPTE_uc010gkv.1_Missense_Mutation_p.K44T	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	182	Helical; (Potential).				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CCTAAGCAACTTAATGTCAAA	0.299000												
NRIP1	8204	broad.mit.edu	37	21	16337791	16337791	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr21:16337791T>C	uc002yjx.2	-	4	3321	c.2723A>G	c.(2722-2724)GAA>GGA	p.E908G		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	908					androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		ATATTTAAATTCAAGATCATT	0.438000												
GRIK1	2897	broad.mit.edu	37	21	31023581	31023581	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr21:31023581T>C	uc002yno.1	-	6	1275	c.811A>G	c.(811-813)AGG>GGG	p.R271G	GRIK1_uc002ynn.2_Missense_Mutation_p.R271G|GRIK1_uc011acs.1_Missense_Mutation_p.R271G|GRIK1_uc011act.1_Missense_Mutation_p.R215G|GRIK1_uc010glq.1_Missense_Mutation_p.R129G|GRIK1_uc002ynr.2_Missense_Mutation_p.R271G	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	271	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	CCACTGTACCTATAGAGTTCC	0.388000												
KRTAP19-8	728299	broad.mit.edu	37	21	32410734	32410734	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr21:32410734C>T	uc010glt.2	-	1	62	c.29G>A	c.(28-30)GGC>GAC	p.G10D		NM_001099219	NP_001092689	Q3LI54	KR198_HUMAN	keratin associated protein 19-8	10						intermediate filament				upper_aerodigestive_tract(1)	1						ATAGCCCAGGCCTCCATAATA	0.547000												
LCA5L	150082	broad.mit.edu	37	21	40777883	40777883	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr21:40777883T>C	uc002yxu.2	-	10	2251	c.1938A>G	c.(1936-1938)GGA>GGG	p.G646G	LCA5L_uc002yxv.2_Silent_p.G646G	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	646											0		Prostate(19;1.2e-06)				CTTTAGAGTCTCCGAAAGCAT	0.418000												
LCA5L	150082	broad.mit.edu	37	21	40778399	40778399	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr21:40778399T>G	uc002yxu.2	-	10	1735	c.1422A>C	c.(1420-1422)GAA>GAC	p.E474D	LCA5L_uc002yxv.2_Missense_Mutation_p.E474D	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	474											0		Prostate(19;1.2e-06)				GATGAATAACTTCAATTATTT	0.343000												
PDE9A	5152	broad.mit.edu	37	21	44151886	44151886	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr21:44151886T>G	uc002zbm.2	+	5	332	c.269T>G	c.(268-270)GTC>GGC	p.V90G	PDE9A_uc002zbn.2_Intron|PDE9A_uc002zbo.2_Intron|PDE9A_uc002zbp.2_5'UTR|PDE9A_uc002zbq.2_Intron|PDE9A_uc002zbs.2_Intron|PDE9A_uc002zbr.2_Intron|PDE9A_uc002zbt.2_Intron|PDE9A_uc002zbu.2_Intron|PDE9A_uc002zbv.2_Intron|PDE9A_uc002zbw.2_Intron|PDE9A_uc002zbx.2_Intron|PDE9A_uc002zby.2_Intron|PDE9A_uc002zbz.2_Intron|PDE9A_uc002zca.2_Missense_Mutation_p.V49G|PDE9A_uc002zcb.2_Missense_Mutation_p.V64G|PDE9A_uc002zcc.2_Intron|PDE9A_uc002zcd.2_Intron|PDE9A_uc002zce.2_Missense_Mutation_p.V23G|PDE9A_uc002zcf.2_5'UTR|PDE9A_uc002zcg.2_Intron|PDE9A_uc002zch.2_5'UTR	NM_002606	NP_002597	O76083	PDE9A_HUMAN	phosphodiesterase 9A isoform a	90					platelet activation|signal transduction	cytosol|endoplasmic reticulum|Golgi apparatus|perinuclear region of cytoplasm|ruffle membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|skin(1)	2						ATAGCTGGTGTCGAGGACAAG	0.532000												
TRAPPC10	7109	broad.mit.edu	37	21	45499968	45499968	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr21:45499968G>A	uc002zea.2	+	13	1852	c.1683G>A	c.(1681-1683)CAG>CAA	p.Q561Q	TRAPPC10_uc010gpo.2_Silent_p.Q272Q|TRAPPC10_uc011afa.1_5'Flank	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	561					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						ACTTCTGCCAGGAGATACTTG	0.502000												
TRPM2	7226	broad.mit.edu	37	21	45837923	45837923	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr21:45837923T>G	uc002zet.1	+	22	3473	c.3260T>G	c.(3259-3261)CTC>CGC	p.L1087R	TRPM2_uc002zeu.1_Missense_Mutation_p.L1087R|TRPM2_uc002zew.1_Missense_Mutation_p.L1087R|TRPM2_uc010gpt.1_Missense_Mutation_p.L1087R|TRPM2_uc002zex.1_Missense_Mutation_p.L873R|TRPM2_uc002zey.1_Missense_Mutation_p.L600R|uc011afe.1_Intron	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1087	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTCATCCTCCTCAGCCACCTG	0.502000												
PCNT	5116	broad.mit.edu	37	21	47810619	47810619	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr21:47810619A>C	uc002zji.3	+	20	3982	c.3875A>C	c.(3874-3876)GAA>GCA	p.E1292A	PCNT_uc002zjj.2_Missense_Mutation_p.E1174A	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1292					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TCTCGTTTTGAAAAAGAATTT	0.418000												
POTEH	23784	broad.mit.edu	37	22	16287707	16287707	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:16287707T>G	uc010gqp.2	-	1	231	c.179A>C	c.(178-180)AAG>ACG	p.K60T	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_5'UTR	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	60										skin(1)	1						CTTGCCCATCTTGCTCCTGAG	0.602000												
CECR2	27443	broad.mit.edu	37	22	18028887	18028887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:18028887G>A	uc010gqw.1	+	16	3970	c.3844G>A	c.(3844-3846)GCA>ACA	p.A1282T	CECR2_uc010gqv.1_Missense_Mutation_p.A1140T|CECR2_uc002zml.2_Missense_Mutation_p.A1141T|CECR2_uc002zmo.2_RNA	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	1324					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		CAACCATAACGCAGCTACCAA	0.502000												
HIRA	7290	broad.mit.edu	37	22	19363240	19363240	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:19363240T>C	uc002zpf.1	-	15	1909	c.1689A>G	c.(1687-1689)AAA>AAG	p.K563K	HIRA_uc011agx.1_Silent_p.K429K|HIRA_uc010grn.1_Silent_p.K563K|HIRA_uc010gro.1_Silent_p.K519K|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	563	Interaction with CCNA1.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					AGTCAAACGCTTTCATGGGTT	0.552000												
MED15	51586	broad.mit.edu	37	22	20920938	20920938	+	Missense_Mutation	SNP	A	A	G	rs149450332		TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:20920938A>G	uc002zsp.2	+	7	955	c.875A>G	c.(874-876)CAG>CGG	p.Q292R	MED15_uc002zso.2_Missense_Mutation_p.Q221R|MED15_uc002zsq.2_Missense_Mutation_p.Q292R|MED15_uc010gso.2_Missense_Mutation_p.Q292R|MED15_uc002zsr.2_Missense_Mutation_p.Q266R|MED15_uc011ahs.1_Missense_Mutation_p.Q266R|MED15_uc002zss.2_Missense_Mutation_p.Q211R|MED15_uc011ahu.1_Missense_Mutation_p.Q18R	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	292	Pro-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			CAGCTGCAGCAGATGCATCAC	0.607000												
SLC7A4	6545	broad.mit.edu	37	22	21384460	21384460	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:21384460T>G	uc002zud.2	-	3	1231	c.1163A>C	c.(1162-1164)GAG>GCG	p.E388A	SLC7A4_uc002zue.2_Missense_Mutation_p.E388A	NM_004173	NP_004164	O43246	CTR4_HUMAN	solute carrier family 7 (cationic amino acid	388					cellular amino acid metabolic process	integral to membrane	basic amino acid transmembrane transporter activity			ovary(1)|lung(1)	2	all_cancers(11;2.85e-22)|Lung NSC(8;4.21e-14)|all_lung(8;6.08e-13)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0968)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)		L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	AACCAGCGACTCCAGGTCCAG	0.637000												
BCR	613	broad.mit.edu	37	22	23615951	23615951	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:23615951A>C	uc002zww.2	+	8	2701	c.2105A>C	c.(2104-2106)AAG>ACG	p.K702T	BCR_uc002zwx.2_Missense_Mutation_p.K702T|BCR_uc011aiy.1_Missense_Mutation_p.K291T|BCR_uc010gtx.1_Missense_Mutation_p.K169T	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	702					regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						ATGACGGTGAAGAAGGGAGAG	0.622000			T	ABL1| FGFR1|JAK2 	CML|ALL|AML							
RFPL1	5988	broad.mit.edu	37	22	29838005	29838005	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:29838005T>C	uc003afn.2	+	2	1057	c.848T>C	c.(847-849)TTT>TCT	p.F283S	RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1	283	B30.2/SPRY.						zinc ion binding				0						CACTTGTTTTTTGCTCCTCCA	0.493000												
NEFH	4744	broad.mit.edu	37	22	29886668	29886668	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:29886668A>G	uc003afo.2	+	4	3110	c.3039A>G	c.(3037-3039)GAA>GAG	p.E1013E	NEFH_uc003afp.2_Missense_Mutation_p.K79R	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	1019	Tail.				cell death|nervous system development	neurofilament					0						AGGCCACAGAAGACAAGGCCG	0.512000												
CCDC157	550631	broad.mit.edu	37	22	30772518	30772518	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:30772518A>T	uc011aku.1	+	12	2703	c.2043A>T	c.(2041-2043)CCA>CCT	p.P681P	CCDC157_uc011akv.1_Silent_p.P681P|uc003aho.1_5'Flank	NM_001017437	NP_001017437	Q569K6	CC157_HUMAN	coiled-coil domain containing 157	681										central_nervous_system(1)	1						GCACATCCCCACCTCGGCAGC	0.682000												
SH3BP1	23616	broad.mit.edu	37	22	38061576	38061576	+	Missense_Mutation	SNP	G	G	T	rs150938915	byFrequency	TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:38061576G>T	uc003atj.1	+	17	2403	c.1516G>T	c.(1516-1518)GCC>TCC	p.A506S	PDXP_uc003atm.1_Missense_Mutation_p.A197S			Q9Y3L3	3BP1_HUMAN	SubName: Full=cDNA FLJ44925 fis, clone BRAMY3014613, highly similar to Homo sapiens SH3-domain binding protein 1 (SH3BP1);	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					signal transduction	cytoplasm	GTPase activator activity|SH3 domain binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CGGGAGCCTGGCCGCTGCAGT	0.647000												
SMCR7L	54471	broad.mit.edu	37	22	39908397	39908397	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:39908397T>C	uc003axx.2	+	5	981	c.483T>C	c.(481-483)GCT>GCC	p.A161A	SMCR7L_uc003axw.2_Silent_p.A161A|SMCR7L_uc010gxz.1_5'UTR|SMCR7L_uc003axy.2_5'UTR	NM_019008	NP_061881	Q9NQG6	SMC7L_HUMAN	hypothetical protein LOC54471	161						integral to membrane|mitochondrion				central_nervous_system(1)	1	Melanoma(58;0.04)					AGCAAGCTGCTGTGGACATAT	0.597000												
TCF20	6942	broad.mit.edu	37	22	42609755	42609755	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:42609755T>C	uc003bcj.1	-	1	1691	c.1557A>G	c.(1555-1557)TTA>TTG	p.L519L	TCF20_uc003bck.1_Silent_p.L519L|TCF20_uc003bnt.2_Silent_p.L519L	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	519					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						AGCCTCCATCTAATGACTCTG	0.537000												
CELSR1	9620	broad.mit.edu	37	22	46860029	46860029	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:46860029A>C	uc003bhw.1	-	2	3758	c.3758T>G	c.(3757-3759)GTC>GGC	p.V1253G		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1253	Extracellular (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GTTGGAGCTGACGTCGGTGTC	0.652000												
SAPS2	9701	broad.mit.edu	37	22	50857310	50857310	+	Silent	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr22:50857310T>A	uc003blb.1	+	8	1055	c.633T>A	c.(631-633)GCT>GCA	p.A211A	SAPS2_uc003bky.1_Silent_p.A211A|SAPS2_uc003bkz.1_Silent_p.A211A|SAPS2_uc003blc.2_Silent_p.A211A|SAPS2_uc003bla.1_Silent_p.A211A	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	211						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		AGTCAAATGCTTCTCAGACTC	0.572000												
CNTN4	152330	broad.mit.edu	37	3	2787211	2787211	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:2787211A>C	uc003bpc.2	+	5	409	c.188A>C	c.(187-189)AAG>ACG	p.K63T	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.K63T	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	63	Ig-like C2-type 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TATAGGTGGAAGTTAAATGGA	0.323000												
EDEM1	9695	broad.mit.edu	37	3	5246886	5246886	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:5246886A>C	uc003bqi.2	+	6	1309	c.1177A>C	c.(1177-1179)AAT>CAT	p.N393H	EDEM1_uc011asz.1_Missense_Mutation_p.N171H|EDEM1_uc003bqh.2_Missense_Mutation_p.N393H	NM_014674	NP_055489	Q92611	EDEM1_HUMAN	ER degradation enhancer, mannosidase alpha-like	393	Lumenal (Potential).				ER-associated protein catabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	integral to endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			ovary(2)|breast(1)	3				Epithelial(13;0.0588)|OV - Ovarian serous cystadenocarcinoma(96;0.0682)		AGAAATGTTTAATGCTGCATA	0.418000												
IL17RC	84818	broad.mit.edu	37	3	9975191	9975191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:9975191G>A	uc003bua.2	+	19	2526	c.2290G>A	c.(2290-2292)GAT>AAT	p.D764N	CIDEC_uc003bto.2_Intron|IL17RC_uc003btz.2_Missense_Mutation_p.D693N|IL17RC_uc011atp.1_Missense_Mutation_p.D519N|IL17RC_uc003bud.2_Missense_Mutation_p.D234N|IL17RC_uc003bub.2_Missense_Mutation_p.D678N|IL17RC_uc010hct.2_Missense_Mutation_p.D680N|IL17RC_uc010hcu.2_Missense_Mutation_p.D663N|IL17RC_uc010hcv.2_Missense_Mutation_p.D661N|IL17RC_uc011atq.1_3'UTR|IL17RC_uc003buc.2_Missense_Mutation_p.D221N|IL17RC_uc003bue.2_Missense_Mutation_p.D316N|CRELD1_uc003buf.2_5'Flank|CRELD1_uc003bug.2_5'Flank|CRELD1_uc003buh.2_5'Flank|CRELD1_uc003bui.2_5'Flank|CRELD1_uc003buj.2_5'Flank	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	764	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						GCCAGCCCTGGATAGCTACTT	0.716000												
IRAK2	3656	broad.mit.edu	37	3	10255072	10255072	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:10255072A>C	uc003bve.1	+	5	786	c.710A>C	c.(709-711)AAG>ACG	p.K237T		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	237	Protein kinase.	ATP (By similarity).			activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						TTCGTCTTCAAGAAGCTCAGA	0.542000												
NUP210	23225	broad.mit.edu	37	3	13427890	13427890	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:13427890T>G	uc003bxv.1	-	6	785	c.702A>C	c.(700-702)GAA>GAC	p.E234D		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	234	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GCAGCCTGACTTCTGCAGGGC	0.498000												
C3orf20	84077	broad.mit.edu	37	3	14731604	14731604	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:14731604A>C	uc003byy.2	+	5	1130	c.726A>C	c.(724-726)AAA>AAC	p.K242N	C3orf20_uc003byz.2_Missense_Mutation_p.K120N|C3orf20_uc003bza.2_Missense_Mutation_p.K120N|C3orf20_uc003byx.1_Missense_Mutation_p.K242N	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	242						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						CTGCTGGAAAAGAAGCCAAGA	0.522000												
ZFYVE20	64145	broad.mit.edu	37	3	15116058	15116058	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:15116058T>G	uc003bzm.1	-	14	2200	c.1586A>C	c.(1585-1587)GAG>GCG	p.E529A	ZFYVE20_uc010hek.1_Missense_Mutation_p.E529A	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	529	Potential.|Necessary for the interaction with EHD1.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						TCGTTCCAACTCCCGTTCACG	0.602000												
KAT2B	8850	broad.mit.edu	37	3	20187855	20187855	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:20187855T>G	uc003cbq.2	+	14	2498	c.2052T>G	c.(2050-2052)GTT>GTG	p.V684V		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	684					cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTCGAAAAGTTTACCCTGGAC	0.338000												
NEK10	152110	broad.mit.edu	37	3	27297800	27297800	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:27297800T>G	uc003cdt.1	-	24	2351	c.2077A>C	c.(2077-2079)ATC>CTC	p.I693L	NEK10_uc003cds.1_Missense_Mutation_p.I90L	NM_199347	NP_955379	Q6ZWH5	NEK10_HUMAN	NIMA-related kinase 10 isoform 3	693	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						GAATACAGGATTGTTCCAACC	0.343000												
CMC1	152100	broad.mit.edu	37	3	28304858	28304858	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:28304858T>C	uc003cea.2	+	2	257	c.96T>C	c.(94-96)TCT>TCC	p.S32S		NM_182523	NP_872329	Q7Z7K0	COXAM_HUMAN	COX assembly mitochondrial protein homolog	32						mitochondrion	metal ion binding				0						AGAGGTGTTCTGAACAAGTTC	0.308000												
AZI2	64343	broad.mit.edu	37	3	28368336	28368336	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:28368336A>T	uc003ceb.2	-	7	1285	c.753T>A	c.(751-753)ACT>ACA	p.T251T	AZI2_uc003cec.2_Silent_p.T139T|AZI2_uc003ced.2_Silent_p.T251T|AZI2_uc003cee.3_Silent_p.T251T	NM_022461	NP_071906	Q9H6S1	AZI2_HUMAN	5-azacytidine induced 2 isoform a	251	Interaction with TBK1.					mitochondrion|plasma membrane				ovary(2)	2						TCTTGATTGCAGTTGAGGTTT	0.398000												
TGFBR2	7048	broad.mit.edu	37	3	30732958	30732958	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:30732958A>G	uc003ceo.2	+	7	1953	c.1571A>G	c.(1570-1572)GAC>GGC	p.D524G	TGFBR2_uc003cen.2_Missense_Mutation_p.D549G	NM_003242	NP_003233	P37173	TGFR2_HUMAN	transforming growth factor, beta receptor II	524	Protein kinase.|Cytoplasmic (Potential).				activation of protein kinase activity|brain development|embryonic cranial skeleton morphogenesis|embryonic hemopoiesis|heart development|myeloid dendritic cell differentiation|palate development|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of B cell tolerance induction|positive regulation of mesenchymal cell proliferation|positive regulation of NK T cell differentiation|positive regulation of reactive oxygen species metabolic process|positive regulation of T cell tolerance induction|positive regulation of tolerance induction to self antigen|response to cholesterol|response to drug|transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|vasculogenesis	caveola|external side of plasma membrane	ATP binding|glycosaminoglycan binding|metal ion binding|protein binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type II|type I transforming growth factor beta receptor binding|type I transforming growth factor beta receptor binding|type III transforming growth factor beta receptor binding	p.D524Y(1)		pancreas(9)|large_intestine(6)|stomach(4)|lung(3)|ovary(3)|central_nervous_system(1)	26						TGGGACCACGACCCAGAGGCC	0.602000												
OSBPL10	114884	broad.mit.edu	37	3	31725256	31725256	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:31725256T>G	uc003cev.2	-	9	1977	c.1596A>C	c.(1594-1596)CAA>CAC	p.Q532H	OSBPL10_uc003ceu.1_Missense_Mutation_p.Q289H|OSBPL10_uc011axf.1_Missense_Mutation_p.Q468H	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	532					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		GATGGGACACTTGCTCAGCCA	0.527000												
TRIM71	131405	broad.mit.edu	37	3	32860404	32860404	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:32860404T>A	uc003cff.2	+	1	895	c.832T>A	c.(832-834)TGC>AGC	p.C278S		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	278	B box-type 2.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						CCTCGGCTTCTGCCAGCACCA	0.677000												
CLASP2	23122	broad.mit.edu	37	3	33648173	33648173	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:33648173T>C	uc003cfu.2	-	16	1958	c.1604A>G	c.(1603-1605)AAG>AGG	p.K535R	CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc003cfv.2_Missense_Mutation_p.K308R|CLASP2_uc011axu.1_Missense_Mutation_p.K312R|CLASP2_uc003cfw.2_Missense_Mutation_p.K308R|CLASP2_uc011axt.1_Missense_Mutation_p.K110R	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	536										ovary(3)|central_nervous_system(1)	4						TTGAAGACTCTTCTGATAAGA	0.398000												
GOLGA4	2803	broad.mit.edu	37	3	37368464	37368464	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:37368464A>C	uc003cgv.2	+	14	5391	c.5087A>C	c.(5086-5088)AAG>ACG	p.K1696T	GOLGA4_uc010hgr.1_Missense_Mutation_p.K1257T|GOLGA4_uc003cgw.2_Missense_Mutation_p.K1718T|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Missense_Mutation_p.K1577T	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	1696	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						GAAAAACTTAAGTCAGTGGAA	0.373000												
XYLB	9942	broad.mit.edu	37	3	38454461	38454461	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:38454461T>C	uc003cic.2	+	19	1677	c.1568T>C	c.(1567-1569)CTC>CCC	p.L523P	XYLB_uc011ayp.1_Missense_Mutation_p.L386P	NM_005108	NP_005099	O75191	XYLB_HUMAN	xylulokinase	523					D-xylose metabolic process|generation of precursor metabolites and energy|xylulose catabolic process		ATP binding|xylulokinase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.00372)|Kidney(284;0.00405)		TATGCCAAACTCGAGCAGAGA	0.537000												
SCN10A	6336	broad.mit.edu	37	3	38835305	38835305	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:38835305A>G	uc003ciq.2	-	1	197	c.197T>C	c.(196-198)TTC>TCC	p.F66S		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	66					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CTCACCATAGAACTTGGGCAG	0.547000												
SCN11A	11280	broad.mit.edu	37	3	38926878	38926878	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:38926878T>A	uc011ays.1	-	17	3164	c.2965A>T	c.(2965-2967)AGT>TGT	p.S989C	SCN11A_uc010hhn.1_Missense_Mutation_p.S67C	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	989					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GATAGTATACTGGTAACATCA	0.428000												
SCN11A	11280	broad.mit.edu	37	3	38936103	38936103	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:38936103A>C	uc011ays.1	-	15	2955	c.2756T>G	c.(2755-2757)CTT>CGT	p.L919R	SCN11A_uc010hhn.1_Missense_Mutation_p.L35R	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	919					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CTCCTCCGCAAGTGGTGCCAA	0.498000												
SCN11A	11280	broad.mit.edu	37	3	38968335	38968335	+	Silent	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:38968335T>A	uc011ays.1	-	4	775	c.576A>T	c.(574-576)CGA>CGT	p.R192R		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	192	I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCCATGGATCTCGAAGGAAAG	0.373000												
ZNF621	285268	broad.mit.edu	37	3	40574022	40574022	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:40574022A>G	uc003ckm.2	+	5	977	c.761A>G	c.(760-762)CAG>CGG	p.Q254R	ZNF621_uc003ckn.2_Missense_Mutation_p.Q254R|ZNF621_uc003cko.2_Missense_Mutation_p.Q219R|ZNF621_uc011aze.1_Missense_Mutation_p.Q246R	NM_001098414	NP_001091884	Q6ZSS3	ZN621_HUMAN	zinc finger protein 621	254	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0515)|Kidney(284;0.0648)		CTGCAGCATCAGAGATTACAC	0.443000												
CTNNB1	1499	broad.mit.edu	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	C	rs28931588		TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:41266097G>C	uc010hia.1	+	4	250	c.94G>C	c.(94-96)GAC>CAC	p.D32H	CTNNB1_uc003ckp.2_Missense_Mutation_p.D32H|CTNNB1_uc003ckq.2_Missense_Mutation_p.D32H|CTNNB1_uc003ckr.2_Missense_Mutation_p.D32H|CTNNB1_uc011azf.1_Missense_Mutation_p.D25H|CTNNB1_uc011azg.1_Intron|uc010hib.1_RNA	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	32			Missing (in hepatocellular carcinoma).|D -> A (in hepatocellular carcinoma).|D -> G (in PTR and hepatocellular carcinoma).		adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding	p.D32Y(110)|p.A5_A80del(63)|p.D32N(58)|p.D32G(53)|p.D32H(37)|p.D32V(20)|p.D32A(12)|p.H24_S47del(9)|p.A5_A80>D(7)|p.A5_Q143del(7)|p.WQQQSYLD25?(5)|p.Q28_H134del(5)|p.W25_D32del(4)|p.W25_I140del(4)|p.S23_S33del(3)|p.V22_G38del(3)|p.T3_A126del(2)|p.M5_N141>D(2)|p.D32E(2)|p.D32_S47del(2)|p.W25_H36del(2)|p.Y30_S33del(2)|p.V22_S33del(2)|p.V22_L139>V(2)|p.A5_Y142>D(2)|p.A5fs*7(2)|p.?(2)|p.L10_N141del(2)|p.D6_A43del(1)|p.E9_S47del(1)|p.Q28_Q61del(1)|p.A20_R151del(1)|p.A20_N141del(1)|p.D11_Y142>H(1)|p.H24_G38del(1)|p.S29_H36del(1)|p.Y30_A97del(1)|p.A20_A80del(1)|p.Q28_A43del(1)|p.E15_I140>V(1)|p.D17_P128del(1)|p.H24_M131del(1)|p.L7_I140del(1)|p.K19_Y142>V(1)|p.A20_L148del(1)|p.V22_A80del(1)|p.W25_I35del(1)|p.V22_G80>NNNNN(1)|p.A5_I35del(1)|p.A20_Q143del(1)|p.A13_R151del(1)|p.D32del(1)|p.S23_I140del(1)|p.M1_A87del(1)|p.W25_S33del(1)|p.V22_T102del(1)|p.S23_A39del(1)|p.A21_A80del(1)|p.D6_I140del(1)|p.Q28_I140del(1)|p.E9_A80del(1)|p.M14_S45del(1)|p.M8_G50del(1)|p.A5_G80>(1)|p.D32_H36>D(1)|p.P16_K133del(1)|p.A5_T59del(1)|p.A20_I35del(1)|p.M1_V173del(1)|p.A5_R90del(1)|p.V22_Y64del(1)|p.M8_A80del(1)|p.E9_I140del(1)|p.D32_S33insS(1)|p.Y30_T40del(1)|p.M1_T42del(1)|p.A5_Q143>E(1)|p.A5_Q72del(1)|p.Q28_D32>H(1)|p.Y30_A80del(1)|p.D32fs*9(1)|p.D6_K133del(1)|p.A5_T42del(1)|p.A5_D144>D(1)|p.A5_T40del(1)|p.D17_A126del(1)|p.A5_E54del(1)|p.S23_I35del(1)|p.V22_S71>A(1)|p.W25_A80del(1)|p.A20_Q72del(1)|p.A20_S111del(1)|p.D32_H36del(1)	CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	GTCTTACCTGGACTCTGGAAT	0.478000	D32N(KE39_STOMACH)	15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of			
ZNF662	389114	broad.mit.edu	37	3	42956217	42956217	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:42956217A>C	uc003cmi.2	+	5	1004	c.652A>C	c.(652-654)AAG>CAG	p.K218Q	ZNF662_uc003cmk.2_Missense_Mutation_p.K244Q|ZNF662_uc003cmj.2_Missense_Mutation_p.K110Q	NM_207404	NP_997287	Q6ZS27	ZN662_HUMAN	zinc finger protein 662 isoform 1	218					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.217)		TAATGGAGAGAAGGTCTATGG	0.383000												
ZNF501	115560	broad.mit.edu	37	3	44776252	44776252	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:44776252A>C	uc003cnu.1	+	3	740	c.339A>C	c.(337-339)AAA>AAC	p.K113N	ZNF501_uc003cnv.1_Missense_Mutation_p.K113N	NM_145044	NP_659481	Q96CX3	ZN501_HUMAN	zinc finger protein 501	113	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00843)|KIRC - Kidney renal clear cell carcinoma(197;0.0463)|Kidney(197;0.0579)		AATGTGGAAAAGCCTTTTGTC	0.388000												
LARS2	23395	broad.mit.edu	37	3	45557745	45557745	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:45557745A>C	uc003cop.1	+	17	2206	c.2021A>C	c.(2020-2022)AAG>ACG	p.K674T	LARS2_uc010hit.1_Missense_Mutation_p.K631T	NM_015340	NP_056155	Q15031	SYLM_HUMAN	leucyl-tRNA synthetase 2, mitochondrial	674					leucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|leucine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.0122)|KIRC - Kidney renal clear cell carcinoma(197;0.0313)|Kidney(197;0.0372)	L-Leucine(DB00149)	CCTCCTGAGAAGGATATCTTG	0.488000												
SLC6A20	54716	broad.mit.edu	37	3	45811859	45811859	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:45811859T>A	uc011bai.1	-	7	1064	c.940A>T	c.(940-942)AGT>TGT	p.S314C	SLC6A20_uc003cow.2_5'UTR|SLC6A20_uc011baj.1_Missense_Mutation_p.S277C	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	314	Extracellular (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		AGCAGCAGACTCACCCTGCAG	0.527000												
SETD2	29072	broad.mit.edu	37	3	47142946	47142946	+	Splice_Site	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:47142946A>G	uc003cqs.2	-	8	5068	c.5015_splice	c.e8+1	p.G1672_splice	SETD2_uc003cqv.2_Splice_Site_p.G1739_splice	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2						regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		AACAATACTTACCCATATCTC	0.358000			N|F|S|Mis		clear cell renal carcinoma							
DHX30	22907	broad.mit.edu	37	3	47890551	47890551	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:47890551A>T	uc003cru.2	+	18	3337	c.2911A>T	c.(2911-2913)AGC>TGC	p.S971C	DHX30_uc003crt.2_Missense_Mutation_p.S932C|MIR1226_hsa-mir-1226|MI0006313_5'Flank	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	971						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		GTACGCACCCAGCCTGCGCTT	0.657000												
CELSR3	1951	broad.mit.edu	37	3	48699754	48699754	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:48699754G>A	uc003cul.2	-	1	595	c.314C>T	c.(313-315)CCG>CTG	p.P105L	CELSR3_uc003cuf.1_Missense_Mutation_p.P175L	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	105	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CTCCTCATTCGGCTGCTCAGG	0.652000												
NCKIPSD	51517	broad.mit.edu	37	3	48717555	48717555	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:48717555A>C	uc003cun.2	-	6	1294	c.1200T>G	c.(1198-1200)AGT>AGG	p.S400R	NCKIPSD_uc003cum.2_Missense_Mutation_p.S393R	NM_016453	NP_057537	Q9NZQ3	SPN90_HUMAN	NCK interacting protein with SH3 domain isoform	400					cytoskeleton organization|NLS-bearing substrate import into nucleus|signal transduction	intermediate filament|nucleus	cytoskeletal protein binding|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		ATAGTGCCCAACTGCGCTGCT	0.617000												
MST1R	4486	broad.mit.edu	37	3	49940444	49940444	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:49940444G>C	uc003cxy.3	-	1	863	c.599C>G	c.(598-600)GCA>GGA	p.A200G	MST1R_uc011bdd.1_Missense_Mutation_p.A200G|MST1R_uc011bde.1_Missense_Mutation_p.A200G|MST1R_uc011bdf.1_Missense_Mutation_p.A200G|MST1R_uc011bdg.1_Missense_Mutation_p.A200G	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	200	Extracellular (Potential).|Sema.				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		CAGTGAGGATGCCACGTAGAA	0.622000												
HEMK1	51409	broad.mit.edu	37	3	50608706	50608706	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:50608706C>T	uc003dau.2	+	2	467	c.171C>T	c.(169-171)ATC>ATT	p.I57I	C3orf18_uc003dat.2_5'Flank|HEMK1_uc003dav.2_Silent_p.I57I|HEMK1_uc003daw.2_Silent_p.I57I	NM_016173	NP_057257	Q9Y5R4	HEMK1_HUMAN	HemK methyltransferase family member 1	57					DNA methylation		DNA binding|N-methyltransferase activity|protein methyltransferase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000283)|KIRC - Kidney renal clear cell carcinoma(197;0.0179)|Kidney(197;0.0212)		AGAGGGGTATCCCTGAGGCCC	0.552000												
RAD54L2	23132	broad.mit.edu	37	3	51671359	51671359	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:51671359T>C	uc011bdt.1	+	10	1647	c.1522T>C	c.(1522-1524)TTT>CTT	p.F508L	RAD54L2_uc003dbh.2_Missense_Mutation_p.F99L|RAD54L2_uc011bdu.1_Missense_Mutation_p.F202L|RAD54L2_uc003dbj.2_5'UTR	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	508	Helicase ATP-binding.					nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		CATGGTGGACTTTGTGCGCCC	0.552000												
RAD54L2	23132	broad.mit.edu	37	3	51697390	51697390	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:51697390A>C	uc011bdt.1	+	22	4483	c.4358A>C	c.(4357-4359)GAT>GCT	p.D1453A	RAD54L2_uc003dbh.2_Missense_Mutation_p.D1042A|RAD54L2_uc011bdu.1_Missense_Mutation_p.D1147A|RAD54L2_uc003dbj.2_Missense_Mutation_p.D779A	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	1453						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		AGCTCCAATGATGATGAGGAT	0.577000												
RRP9	9136	broad.mit.edu	37	3	51969429	51969429	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:51969429A>G	uc003dbw.1	-	10	939	c.900T>C	c.(898-900)GCT>GCC	p.A300A		NM_004704	NP_004695	O43818	U3IP2_HUMAN	RNA, U3 small nucleolar interacting protein 2	300	WD 4.				rRNA processing	nucleolus|small nuclear ribonucleoprotein complex|small nucleolar ribonucleoprotein complex	RNA binding			breast(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.000553)|KIRC - Kidney renal clear cell carcinoma(197;0.000724)		CCCGGCCCCCAGCCGTCACAC	0.642000												
BAP1	8314	broad.mit.edu	37	3	52437539	52437539	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:52437539A>C	uc003ddx.2	-	13	1737	c.1622T>G	c.(1621-1623)GTT>GGT	p.V541G	BAP1_uc003ddw.2_RNA|BAP1_uc010hmg.2_RNA|BAP1_uc010hmh.2_Intron	NM_004656	NP_004647	Q92560	BAP1_HUMAN	BRCA1 associated protein-1	541					monoubiquitinated histone H2A deubiquitination|negative regulation of cell proliferation|protein K48-linked deubiquitination|regulation of cell cycle|regulation of cell growth|ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|PR-DUB complex	chromatin binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			pleura(32)|eye(28)|lung(2)|ovary(2)|breast(1)	65				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)		TATGCAGTCAACACGCAGCAG	0.627000			N|Mis|F|S|O		uveal melanoma|breast|NSCLC							
PBRM1	55193	broad.mit.edu	37	3	52620677	52620677	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:52620677A>C	uc003des.2	-	20	3163	c.3151T>G	c.(3151-3153)TTC>GTC	p.F1051V	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Missense_Mutation_p.F1051V|PBRM1_uc003der.2_Missense_Mutation_p.F1019V|PBRM1_uc003det.2_Missense_Mutation_p.F1066V|PBRM1_uc003deu.2_Missense_Mutation_p.F1066V|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Missense_Mutation_p.F1051V|PBRM1_uc010hmk.1_Missense_Mutation_p.F1026V|PBRM1_uc003dey.2_Missense_Mutation_p.F1026V|PBRM1_uc003dez.1_Missense_Mutation_p.F1050V|PBRM1_uc003dfb.1_Missense_Mutation_p.F963V|PBRM1_uc003dfa.1_Missense_Mutation_p.F397V	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	1051	BAH 1.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		TCATCTCGGAAGTTTTCTGGG	0.373000			Mis|N|F|S|D|O		clear cell renal carcinoma|breast							
NEK4	6787	broad.mit.edu	37	3	52780851	52780851	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:52780851A>G	uc003dfq.3	-	9	1765	c.1576T>C	c.(1576-1578)TCT>CCT	p.S526P	NEK4_uc011bej.1_Missense_Mutation_p.S437P|NEK4_uc003dfr.2_Missense_Mutation_p.S480P	NM_003157	NP_003148	P51957	NEK4_HUMAN	NIMA-related kinase 4	526					cell division|mitosis	nucleus	ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;7.44e-05)|Kidney(197;0.000711)|KIRC - Kidney renal clear cell carcinoma(197;0.00086)|OV - Ovarian serous cystadenocarcinoma(275;0.0513)		TCAGACCCAGAGTTGTGTGGC	0.443000												
TKT	7086	broad.mit.edu	37	3	53274289	53274289	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:53274289C>T	uc003dgo.2	-	4	525	c.415G>A	c.(415-417)GGC>AGC	p.G139S	TKT_uc011beo.1_Missense_Mutation_p.G92S|TKT_uc003dgq.2_Missense_Mutation_p.G139S|TKT_uc011beq.1_Missense_Mutation_p.G139S|TKT_uc011ber.1_5'UTR|TKT_uc011bep.1_Missense_Mutation_p.G56S	NM_001135055	NP_001128527	P29401	TKT_HUMAN	transketolase isoform 1	139					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|transketolase activity			ovary(2)	2		Prostate(884;0.0959)		BRCA - Breast invasive adenocarcinoma(193;0.000159)|OV - Ovarian serous cystadenocarcinoma(275;0.000314)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)	Thiamine(DB00152)	AAGTATTTGCCGGTGTAGGCC	0.602000												
PXK	54899	broad.mit.edu	37	3	58377558	58377558	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:58377558T>G	uc003djz.1	+	7	698	c.599T>G	c.(598-600)CTT>CGT	p.L200R	PXK_uc003djx.1_Missense_Mutation_p.L200R|PXK_uc003djy.1_Missense_Mutation_p.L183R|PXK_uc003dka.1_Missense_Mutation_p.L200R|PXK_uc003dkb.1_Missense_Mutation_p.L117R|PXK_uc003dkc.1_Missense_Mutation_p.L183R|PXK_uc011bfe.1_Missense_Mutation_p.L167R|PXK_uc010hnj.1_Missense_Mutation_p.L167R|PXK_uc003dkd.1_Missense_Mutation_p.L63R|PXK_uc010hnk.1_Intron	NM_017771	NP_060241	Q7Z7A4	PXK_HUMAN	PX domain containing serine/threonine kinase	200	Protein kinase.				cell communication|inflammatory response|negative regulation of ATPase activity|negative regulation of ion transport|regulation of synaptic transmission	centrosome|cytoplasm|nucleus|plasma membrane	actin binding|ATP binding|phosphatidylinositol binding|phosphatidylinositol binding|protein C-terminus binding|protein kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000249)|KIRC - Kidney renal clear cell carcinoma(10;0.00346)|Kidney(10;0.00368)|OV - Ovarian serous cystadenocarcinoma(275;0.22)		CTAATCAAACTTCTGCCTTCT	0.403000												
ACOX2	8309	broad.mit.edu	37	3	58519189	58519189	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:58519189T>A	uc003dkl.2	-	5	741	c.566A>T	c.(565-567)AAA>ATA	p.K189I		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2	189					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		AGGCCACCATTTGGTGGCAGT	0.438000											OREG0015638	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
TMF1	7110	broad.mit.edu	37	3	69096977	69096977	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:69096977A>C	uc003dnn.2	-	2	1126	c.879T>G	c.(877-879)TTT>TTG	p.F293L	TMF1_uc011bfx.1_Missense_Mutation_p.F293L	NM_007114	NP_009045	P82094	TMF1_HUMAN	TATA element modulatory factor 1	293					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi membrane|nucleus	DNA binding|protein binding|transcription cofactor activity				0		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;4.48e-05)|Epithelial(33;0.000274)|LUSC - Lung squamous cell carcinoma(21;0.0123)|KIRC - Kidney renal clear cell carcinoma(39;0.211)|Kidney(39;0.247)		AGAGAAGCTGAAAAGATGTCT	0.378000												
CNTN3	5067	broad.mit.edu	37	3	74418407	74418407	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:74418407A>C	uc003dpm.1	-	7	959	c.879T>G	c.(877-879)GGT>GGG	p.G293G		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	293	Ig-like C2-type 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		ATTCATAGGAACCTGCATCTT	0.428000												
ROBO1	6091	broad.mit.edu	37	3	78655933	78655933	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:78655933T>C	uc003dqe.2	-	29	4902	c.4694A>G	c.(4693-4695)AAC>AGC	p.N1565S	ROBO1_uc003dqb.2_Missense_Mutation_p.N1526S|ROBO1_uc003dqc.2_Missense_Mutation_p.N1465S|ROBO1_uc003dqd.2_Missense_Mutation_p.N1520S|ROBO1_uc010hoh.2_Missense_Mutation_p.N757S|ROBO1_uc011bgl.1_Missense_Mutation_p.N1137S	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1565	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		TGCTGCCTTGTTTCCACGTCC	0.453000												
ROBO1	6091	broad.mit.edu	37	3	78735060	78735060	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:78735060A>C	uc003dqe.2	-	10	1386	c.1178T>G	c.(1177-1179)CTT>CGT	p.L393R	ROBO1_uc003dqb.2_Missense_Mutation_p.L354R|ROBO1_uc003dqc.2_Missense_Mutation_p.L357R|ROBO1_uc003dqd.2_Missense_Mutation_p.L357R|ROBO1_uc010hoh.2_5'UTR|ROBO1_uc003dqf.1_Missense_Mutation_p.L72R	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	393	Extracellular (Potential).|Ig-like C2-type 4.				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		ATATGAGAAAAGTAGATTCTA	0.348000												
CADM2	253559	broad.mit.edu	37	3	86028312	86028312	+	Splice_Site	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:86028312A>G	uc003dqj.2	+	8	1570	c.944_splice	c.e8-2	p.D315_splice	CADM2_uc003dqk.2_Intron|CADM2_uc003dql.2_Splice_Site_p.D317_splice	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D						adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		TCCACTCACCAGATGTTCCCA	0.368000												
EPHA3	2042	broad.mit.edu	37	3	89176368	89176368	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:89176368T>G	uc003dqy.2	+	2	323	c.98T>G	c.(97-99)CTG>CGG	p.L33R	EPHA3_uc003dqx.1_Missense_Mutation_p.L33R|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	33	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GTCAATCTACTGGATTCAAAA	0.338000										TSP Lung(6;0.00050)		
ARL13B	200894	broad.mit.edu	37	3	93761872	93761872	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:93761872T>C	uc003drc.2	+	7	1098	c.812T>C	c.(811-813)CTT>CCT	p.L271P	ARL13B_uc010hop.2_Missense_Mutation_p.L122P|ARL13B_uc003drd.2_Missense_Mutation_p.L164P|ARL13B_uc003dre.2_Missense_Mutation_p.L256P|ARL13B_uc003drf.2_Missense_Mutation_p.L271P|ARL13B_uc003drg.2_Missense_Mutation_p.L168P	NM_182896	NP_878899	Q3SXY8	AR13B_HUMAN	ADP-ribosylation factor-like 2-like 1 isoform 1	271							GTP binding				0						GAAGGAAAACTTGAAAGAGAG	0.333000												
CRYBG3	131544	broad.mit.edu	37	3	97596378	97596378	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:97596378A>T	uc003drx.2	+	1	560	c.496A>T	c.(496-498)AGA>TGA	p.R166*		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						CAGGAAATCAAGAGACAGTGA	0.438000												
OR5H6	79295	broad.mit.edu	37	3	97983357	97983357	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:97983357T>G	uc003dsi.1	+	1	229	c.229T>G	c.(229-231)TTA>GTA	p.L77V		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	77	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						CCCAATGTACTTATTCCTTGG	0.413000												
ABI3BP	25890	broad.mit.edu	37	3	100595371	100595371	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:100595371T>G	uc003dun.2	-	7	836	c.751A>C	c.(751-753)ACA>CCA	p.T251P	ABI3BP_uc003duo.2_Missense_Mutation_p.T244P|ABI3BP_uc003dup.3_Missense_Mutation_p.T244P	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	251						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						TTGATGATTGTTATTGGGATT	0.353000												
IMPG2	50939	broad.mit.edu	37	3	100963575	100963575	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:100963575T>A	uc003duq.1	-	13	1803	c.1600A>T	c.(1600-1602)AGT>TGT	p.S534C	IMPG2_uc011bhe.1_Missense_Mutation_p.S397C	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	534	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						GTGAATGAACTTGAAGGCAAT	0.348000												
CBLB	868	broad.mit.edu	37	3	105378018	105378018	+	Silent	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:105378018T>A	uc003dwc.2	-	19	3067	c.2745A>T	c.(2743-2745)CCA>CCT	p.P915P	CBLB_uc003dwa.2_Silent_p.P130P|CBLB_uc011bhi.1_Silent_p.P893P	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	915	Pro-rich.|Interaction with SH3KBP1.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						GGTGAATTTCTGGTGCAGTCC	0.463000			Mis S		AML							
CCDC54	84692	broad.mit.edu	37	3	107097406	107097406	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:107097406A>C	uc003dwi.1	+	1	1219	c.972A>C	c.(970-972)GAA>GAC	p.E324D		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	324											0						TAAAAGAAGAAGTAACTCGAC	0.403000												
KIAA2018	205717	broad.mit.edu	37	3	113375311	113375311	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:113375311T>G	uc003eam.2	-	7	5629	c.5218A>C	c.(5218-5220)AGT>CGT	p.S1740R	KIAA2018_uc003eal.2_Missense_Mutation_p.S1684R	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1740					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						CTAGCTCCACTTGGTTTAAAC	0.428000												
IGSF11	152404	broad.mit.edu	37	3	118645003	118645003	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:118645003A>C	uc003ebw.2	-	4	772	c.525T>G	c.(523-525)ACT>ACG	p.T175T	IGSF11_uc011biv.1_Silent_p.T175T|IGSF11_uc003ebx.2_Silent_p.T175T|IGSF11_uc003eby.2_Silent_p.T174T|IGSF11_uc003ebz.2_Silent_p.T174T|IGSF11_uc010hqs.2_Silent_p.T174T	NM_001015887	NP_001015887	Q5DX21	IGS11_HUMAN	immunoglobulin superfamily, member 11 isoform b	175	Ig-like C2-type.|Extracellular (Potential).				cell adhesion|regulation of growth	integral to membrane|plasma membrane	receptor activity				0						CCCAAAGGTAAGTTGGTCGAG	0.478000												
B4GALT4	8702	broad.mit.edu	37	3	118948756	118948756	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:118948756G>A	uc003ecg.2	-	3	832	c.191C>T	c.(190-192)ACT>ATT	p.T64I	B4GALT4_uc003ece.1_Missense_Mutation_p.T64I|B4GALT4_uc003ecf.2_RNA|B4GALT4_uc003ech.2_Missense_Mutation_p.T64I|B4GALT4_uc003eci.2_Missense_Mutation_p.T64I|B4GALT4_uc011biy.1_Intron	NM_212543	NP_997708	O60513	B4GT4_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	64	Lumenal (Potential).				membrane lipid metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	metal ion binding|N-acetyllactosamine synthase activity				0				GBM - Glioblastoma multiforme(114;0.222)	N-Acetyl-D-glucosamine(DB00141)	TGCTTCATTAGTCAGAGTTTT	0.413000												
C3orf15	89876	broad.mit.edu	37	3	119426380	119426380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:119426380C>T	uc010hqx.1	+	3	408	c.331C>T	c.(331-333)CAC>TAC	p.H111Y	C3orf15_uc003edc.2_Missense_Mutation_p.H111Y|C3orf15_uc010hqy.1_Missense_Mutation_p.H111Y|C3orf15_uc003ede.3_Missense_Mutation_p.H111Y|C3orf15_uc010hqz.2_Missense_Mutation_p.H49Y|C3orf15_uc011bjd.1_Intron|C3orf15_uc011bje.1_Missense_Mutation_p.H91Y|C3orf15_uc010hra.1_5'UTR			Q7Z4T9	AAT1_HUMAN	RecName: Full=AMY-1-associating protein expressed in testis 1;          Short=AAT-1;	111						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		TAAGGAGAAACACAGAGAAGC	0.438000												
POLQ	10721	broad.mit.edu	37	3	121238762	121238762	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:121238762T>A	uc003eee.3	-	9	1553	c.1424A>T	c.(1423-1425)AAG>ATG	p.K475M		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	475	Helicase C-terminal.				DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		AACCATCTGCTTATAAGTAAG	0.438000								DNA_polymerases_(catalytic_subunits)				
FBXO40	51725	broad.mit.edu	37	3	121340935	121340935	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:121340935A>C	uc003eeg.2	+	3	869	c.659A>C	c.(658-660)AAT>ACT	p.N220T		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	220					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		CAGTGGGAAAATATTTTCAGC	0.468000												
GOLGB1	2804	broad.mit.edu	37	3	121414777	121414777	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:121414777T>G	uc003eei.3	-	13	4704	c.4578A>C	c.(4576-4578)CAA>CAC	p.Q1526H	GOLGB1_uc010hrc.2_Missense_Mutation_p.Q1531H|GOLGB1_uc003eej.3_Missense_Mutation_p.Q1492H|GOLGB1_uc011bjm.1_Missense_Mutation_p.Q1412H|GOLGB1_uc010hrd.1_Missense_Mutation_p.Q1490H	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	1526	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		GAGCAGAAACTTGGCTTTCCA	0.393000												
GOLGB1	2804	broad.mit.edu	37	3	121415485	121415485	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:121415485A>G	uc003eei.3	-	13	3996	c.3870T>C	c.(3868-3870)TCT>TCC	p.S1290S	GOLGB1_uc010hrc.2_Silent_p.S1295S|GOLGB1_uc003eej.3_Silent_p.S1256S|GOLGB1_uc011bjm.1_Silent_p.S1176S|GOLGB1_uc010hrd.1_Silent_p.S1254S	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	1290	Cytoplasmic (Potential).				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		CTTCAGAATGAGAAGGCCAGT	0.468000												
EAF2	55840	broad.mit.edu	37	3	121573582	121573582	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:121573582T>C	uc003een.2	+	3	349	c.250T>C	c.(250-252)TTA>CTA	p.L84L	EAF2_uc003eeo.2_Intron	NM_018456	NP_060926	Q96CJ1	EAF2_HUMAN	ELL associated factor 2	84	Necessary for interaction with ELL.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	protein binding				0				GBM - Glioblastoma multiforme(114;0.0972)		AAAACCTTACTTAAAAGAATG	0.299000												
CCDC58	131076	broad.mit.edu	37	3	122090532	122090532	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:122090532A>C	uc003eey.2	-	2	170	c.167T>G	c.(166-168)CTT>CGT	p.L56R		NM_001017928	NP_001017928	Q4VC31	CCD58_HUMAN	coiled-coil domain containing 58	56											0				GBM - Glioblastoma multiforme(114;0.148)		AGACTCATAAAGTTGTTTACA	0.373000												
PARP14	54625	broad.mit.edu	37	3	122418264	122418264	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:122418264T>C	uc003efq.3	+	6	922	c.863T>C	c.(862-864)CTC>CCC	p.L288P	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.L5P|PARP14_uc003efs.1_Missense_Mutation_p.L5P	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	288					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		GCCACAAAACTCGACTTCAAT	0.393000												
PARP14	54625	broad.mit.edu	37	3	122418777	122418777	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:122418777A>C	uc003efq.3	+	6	1435	c.1376A>C	c.(1375-1377)AAA>ACA	p.K459T	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.K176T|PARP14_uc003efs.1_Missense_Mutation_p.K176T	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	459					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		ACTACTCAAAAAATTAAAAGG	0.383000												
ALDH1L1	10840	broad.mit.edu	37	3	125854444	125854444	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:125854444T>G	uc003eim.1	-	12	1596	c.1406A>C	c.(1405-1407)AAG>ACG	p.K469T	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.K368T|ALDH1L1_uc003eio.2_Missense_Mutation_p.K171T|ALDH1L1_uc010hsf.1_Missense_Mutation_p.K495T	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	469	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	AAAGGCATCCTTGGCTGCGGC	0.607000												
KIAA1257	57501	broad.mit.edu	37	3	128706568	128706568	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:128706568T>C	uc003elj.3	-	4	754	c.558A>G	c.(556-558)AAA>AAG	p.K186K	KIAA1257_uc003elg.1_Silent_p.K186K|KIAA1257_uc003eli.3_Silent_p.K74K	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	186											0						TCAAGGTGATTTTGTGGAAAT	0.428000												
IFT122	55764	broad.mit.edu	37	3	129195557	129195557	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:129195557A>G	uc003emm.2	+	11	1266	c.1060A>G	c.(1060-1062)ACA>GCA	p.T354A	IFT122_uc003eml.2_Missense_Mutation_p.T405A|IFT122_uc003emn.2_Missense_Mutation_p.T295A|IFT122_uc003emo.2_Missense_Mutation_p.T243A|IFT122_uc003emp.2_Missense_Mutation_p.T204A|IFT122_uc010htc.2_Missense_Mutation_p.T346A|IFT122_uc011bky.1_Missense_Mutation_p.T145A|IFT122_uc003emq.2_Missense_Mutation_p.T194A|IFT122_uc003emr.2_Missense_Mutation_p.T145A|IFT122_uc011bla.1_Missense_Mutation_p.T145A|IFT122_uc011bkx.1_Missense_Mutation_p.T194A|IFT122_uc011bkz.1_RNA	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	354	WD 6.				camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						TATTTTCAGCACAGTCCATGG	0.532000												
IFT122	55764	broad.mit.edu	37	3	129233240	129233240	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:129233240T>A	uc003emm.2	+	25	3202	c.2996T>A	c.(2995-2997)CTC>CAC	p.L999H	IFT122_uc003eml.2_Missense_Mutation_p.L1050H|IFT122_uc003emn.2_Missense_Mutation_p.L940H|IFT122_uc003emo.2_Missense_Mutation_p.L889H|IFT122_uc003emp.2_Missense_Mutation_p.L849H|IFT122_uc010htc.2_Missense_Mutation_p.L992H|IFT122_uc011bky.1_Missense_Mutation_p.L790H|IFT122_uc003emq.2_Missense_Mutation_p.L839H|IFT122_uc003emr.2_Missense_Mutation_p.L752H|IFT122_uc011bla.1_Missense_Mutation_p.L773H|IFT122_uc010hte.2_Missense_Mutation_p.L325H|IFT122_uc003ems.2_Missense_Mutation_p.L381H	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	999					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						AGGAAAATACTCTTCACCTTG	0.607000												
TMCC1	23023	broad.mit.edu	37	3	129389315	129389315	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:129389315A>T	uc003emz.3	-	5	1870	c.1369T>A	c.(1369-1371)TCA>ACA	p.S457T	TMCC1_uc003emy.3_Missense_Mutation_p.S133T|TMCC1_uc011blc.1_Missense_Mutation_p.S278T|TMCC1_uc010htg.2_Missense_Mutation_p.S343T	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	457						integral to membrane				skin(1)	1						TCAAATCCTGAGCTCTGCATG	0.522000												
COL6A6	131873	broad.mit.edu	37	3	130286941	130286941	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:130286941A>C	uc010htl.2	+	5	1925	c.1894A>C	c.(1894-1896)AGT>CGT	p.S632R		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	632	Nonhelical region.|VWFA 4.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CAGTTCTGGAAGTATAGGACC	0.398000												
ACAD11	84129	broad.mit.edu	37	3	132345663	132345663	+	Splice_Site	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:132345663T>G	uc003eov.3	-	9	1451	c.1071_splice	c.e9-1	p.R357_splice	ACAD11_uc011blr.1_5'UTR|ACAD11_uc003eoy.2_Splice_Site_p.R357_splice	NM_032169	NP_115545	Q709F0	ACD11_HUMAN	putative acyl-CoA dehydrogenase							peroxisome	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|transferase activity, transferring phosphorus-containing groups			ovary(1)	1						CTGAAAGTTCTTTGCCAAAAG	0.279000												
TOPBP1	11073	broad.mit.edu	37	3	133339089	133339089	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:133339089A>G	uc003eps.2	-	20	3413	c.3281T>C	c.(3280-3282)CTT>CCT	p.L1094P	TOPBP1_uc003ept.1_Missense_Mutation_p.L98P	NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	1094					DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						ACTTCTTGAAAGGGAAGTCCT	0.493000								Other_conserved_DNA_damage_response_genes				
RAB6B	51560	broad.mit.edu	37	3	133557075	133557075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:133557075G>A	uc003epy.2	-	6	811	c.430C>T	c.(430-432)CGC>TGC	p.R144C	RAB6B_uc011blu.1_Missense_Mutation_p.R131C	NM_016577	NP_057661	Q9NRW1	RAB6B_HUMAN	RAB6B, member RAS oncogene family	144					protein transport|retrograde vesicle-mediated transport, Golgi to ER|small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle|Golgi membrane	GTP binding|GTPase activity|protein binding			pancreas(1)	1						TCTTTGGCGCGCTGCTCCCCC	0.502000												
ARMC8	25852	broad.mit.edu	37	3	137942279	137942279	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:137942279T>G	uc003esa.1	+	5	568	c.201T>G	c.(199-201)ACT>ACG	p.T67T	ARMC8_uc003erw.2_Silent_p.T67T|ARMC8_uc003erx.2_Silent_p.T67T|ARMC8_uc003ery.2_Silent_p.T39T|ARMC8_uc003erz.2_Silent_p.T39T|ARMC8_uc011bmf.1_Silent_p.T81T|ARMC8_uc011bmg.1_Silent_p.T81T|ARMC8_uc011bmh.1_Silent_p.T39T|ARMC8_uc003esb.1_Silent_p.T39T	NM_015396	NP_056211	Q8IUR7	ARMC8_HUMAN	armadillo repeat containing 8 isoform 2	81	ARM 1.						binding				0						AGCTGAAAACTGAATGTGCAG	0.383000												
TRIM42	287015	broad.mit.edu	37	3	140407025	140407025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:140407025G>A	uc003eto.1	+	3	1692	c.1501G>A	c.(1501-1503)GGG>AGG	p.G501R		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	501						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						ACGCTCCTCAGGGGACTCCCT	0.567000												
XRN1	54464	broad.mit.edu	37	3	142103387	142103387	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:142103387A>C	uc003eus.2	-	21	2547	c.2480T>G	c.(2479-2481)TTT>TGT	p.F827C	XRN1_uc010huu.2_Missense_Mutation_p.F293C|XRN1_uc003eut.2_Missense_Mutation_p.F827C|XRN1_uc003euu.2_Missense_Mutation_p.F827C|XRN1_uc003euv.1_Missense_Mutation_p.F688C	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	827					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						TTGATAAACAAAAGGAACAAC	0.308000												
ATR	545	broad.mit.edu	37	3	142231116	142231116	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:142231116T>G	uc003eux.3	-	27	4960	c.4838A>C	c.(4837-4839)AAG>ACG	p.K1613T		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1613					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TGAGTCTACCTTATTTCTGTT	0.368000								Other_conserved_DNA_damage_response_genes				
SLC9A9	285195	broad.mit.edu	37	3	143214209	143214209	+	Missense_Mutation	SNP	T	T	C	rs138653730		TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:143214209T>C	uc003evn.2	-	10	1353	c.1171A>G	c.(1171-1173)ATC>GTC	p.I391V		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	391	Helical; (Potential).				regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						GCATTAAAGATATGATTCTGG	0.353000												
PLOD2	5352	broad.mit.edu	37	3	145790437	145790437	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:145790437A>C	uc003evs.1	-	16	2202	c.1696T>G	c.(1696-1698)TTT>GTT	p.F566V	PLOD2_uc003evq.1_Missense_Mutation_p.F247V|PLOD2_uc011bnm.1_Missense_Mutation_p.F532V|PLOD2_uc003evr.1_Missense_Mutation_p.F587V	NM_000935	NP_000926	O00469	PLOD2_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	566					protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2					Vitamin C(DB00126)	GGGAACCAAAAGACATCTGGA	0.284000												
IGSF10	285313	broad.mit.edu	37	3	151165878	151165878	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:151165878T>G	uc011bod.1	-	4	1891	c.1891A>C	c.(1891-1893)AGA>CGA	p.R631R		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	631	Ig-like C2-type 2.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGTAATATTCTTAATGTGCCA	0.413000												
MBNL1	4154	broad.mit.edu	37	3	152132860	152132860	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:152132860T>C	uc003ezm.2	+	2	1094	c.305T>C	c.(304-306)CTA>CCA	p.L102P	MBNL1_uc003ezh.2_Missense_Mutation_p.L102P|MBNL1_uc003ezi.2_Missense_Mutation_p.L102P|MBNL1_uc003ezj.2_Missense_Mutation_p.L45P|MBNL1_uc003ezl.2_Missense_Mutation_p.L102P|MBNL1_uc003ezp.2_Missense_Mutation_p.L102P|MBNL1_uc003ezn.2_Missense_Mutation_p.L102P|MBNL1_uc003ezo.2_Missense_Mutation_p.L102P|MBNL1_uc010hvp.2_Missense_Mutation_p.L10P	NM_207293	NP_997176	Q9NR56	MBNL1_HUMAN	muscleblind-like 1 isoform c	102					embryonic limb morphogenesis|in utero embryonic development|myoblast differentiation|nervous system development	nucleus|stress granule	double-stranded RNA binding|protein binding|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			CAAATGCAACTAGCCAATGCC	0.438000												
TIPARP	25976	broad.mit.edu	37	3	156413677	156413677	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:156413677A>C	uc003fav.2	+	4	1358	c.1110A>C	c.(1108-1110)GAA>GAC	p.E370D	TIPARP_uc003faw.2_Missense_Mutation_p.E370D	NM_015508	NP_056323	Q7Z3E1	PARPT_HUMAN	TCDD-inducible poly(ADP-ribose) polymerase	370	WWE.						NAD+ ADP-ribosyltransferase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|breast(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			TGATTGAAGAAGCCAACTCTC	0.353000												
IL12A	3592	broad.mit.edu	37	3	159713282	159713282	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:159713282T>G	uc003fcx.2	+	7	913	c.698T>G	c.(697-699)CTT>CGT	p.L233R	uc003fcw.1_Intron	NM_000882	NP_000873	P29459	IL12A_HUMAN	interleukin 12A precursor	199					cell cycle arrest|cell migration|defense response to Gram-positive bacterium|immune response|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of cell adhesion|positive regulation of interferon-gamma production|positive regulation of natural killer cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of NK T cell activation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of tyrosine phosphorylation of Stat4 protein|response to lipopolysaccharide|response to UV-B|response to virus	interleukin-12 complex	cytokine activity|growth factor activity|interleukin-12 receptor binding|interleukin-27 binding|protein heterodimerization activity				0			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			TGCATACTTCTTCATGCTTTC	0.403000												
BCHE	590	broad.mit.edu	37	3	165548648	165548648	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:165548648T>G	uc003fem.3	-	2	334	c.174A>C	c.(172-174)GGA>GGC	p.G58G	BCHE_uc003fen.3_Intron	NM_000055	NP_000046	P06276	CHLE_HUMAN	butyrylcholinesterase precursor	58					choline metabolic process|cocaine metabolic process|synaptic transmission, cholinergic	endoplasmic reticulum lumen|extracellular space|membrane	acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|enzyme binding			ovary(3)|pancreas(1)	4					Ambenonium(DB01122)|Atropine(DB00572)|Bambuterol(DB01408)|Chlorpromazine(DB00477)|Choline(DB00122)|Cinnarizine(DB00568)|Demecarium bromide(DB00944)|Dibucaine(DB00527)|Donepezil(DB00843)|Echothiophate Iodide(DB01057)|Edrophonium(DB01010)|Ethopropazine(DB00392)|Etomidate(DB00292)|Galantamine(DB00674)|Hexafluronium bromide(DB00941)|Isoflurophate(DB00677)|Mefloquine(DB00358)|Mivacurium(DB01226)|Neostigmine(DB01400)|Pancuronium(DB01337)|Pralidoxime(DB00733)|Procainamide(DB01035)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Succinylcholine(DB00202)|Terbutaline(DB00871)|Trimethaphan(DB01116)	CATAGGGAATTCCAAGAAAGG	0.413000												
SERPINI1	5274	broad.mit.edu	37	3	167510376	167510376	+	Splice_Site	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:167510376A>G	uc003ffa.3	+	4	680	c.482_splice	c.e4-2	p.N161_splice	SERPINI1_uc003ffb.3_Splice_Site_p.N161_splice	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor						central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						TTTCCTAAATAGATCTGGTGA	0.398000												
LRRC31	79782	broad.mit.edu	37	3	169578490	169578490	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:169578490A>G	uc003fgc.1	-	3	423	c.346T>C	c.(346-348)TTG>CTG	p.L116L	LRRC31_uc010hwp.1_Intron	NM_024727	NP_079003	Q6UY01	LRC31_HUMAN	leucine rich repeat containing 31	116										ovary(2)|skin(1)	3	all_cancers(22;2.76e-22)|all_epithelial(15;4.73e-27)|all_lung(20;9.24e-17)|Lung NSC(18;3.85e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00943)			AGTTCTTCCAAGTCTGGGAGA	0.398000												
SLC7A14	57709	broad.mit.edu	37	3	170201299	170201299	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:170201299A>C	uc003fgz.2	-	6	1235	c.919T>G	c.(919-921)TTA>GTA	p.L307V	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	307	Helical; (Potential).					integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			ATCAGAGTTAAGATCACGCTC	0.512000											OREG0015917	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
TNIK	23043	broad.mit.edu	37	3	170797363	170797363	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:170797363T>C	uc003fhh.2	-	28	3737	c.3392A>G	c.(3391-3393)AAG>AGG	p.K1131R	TNIK_uc003fhi.2_Missense_Mutation_p.K1076R|TNIK_uc003fhj.2_Missense_Mutation_p.K1102R|TNIK_uc003fhk.2_Missense_Mutation_p.K1123R|TNIK_uc003fhl.2_Missense_Mutation_p.K1047R|TNIK_uc003fhm.2_Missense_Mutation_p.K1068R|TNIK_uc003fhn.2_Missense_Mutation_p.K1094R|TNIK_uc003fho.2_Missense_Mutation_p.K1039R|TNIK_uc003fhg.2_Missense_Mutation_p.K309R|TNIK_uc003fhp.2_Missense_Mutation_p.K63R	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	1131	CNH.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			GCCTTGTTTCTTTTCTACTTC	0.348000												
ECT2	1894	broad.mit.edu	37	3	172533486	172533486	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:172533486A>C	uc003fii.2	+	22	2538	c.2400A>C	c.(2398-2400)AAA>AAC	p.K800N	ECT2_uc010hwv.1_Missense_Mutation_p.K831N|ECT2_uc003fih.2_Missense_Mutation_p.K799N|ECT2_uc003fij.1_Missense_Mutation_p.K800N|ECT2_uc003fik.1_Missense_Mutation_p.K800N|ECT2_uc003fil.1_Missense_Mutation_p.K831N|ECT2_uc003fim.1_Missense_Mutation_p.K99N	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	800					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			GAGCAATAAAAAAGACTTCAA	0.303000												
SPATA16	83893	broad.mit.edu	37	3	172835109	172835109	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:172835109T>G	uc003fin.3	-	2	571	c.413A>C	c.(412-414)GAG>GCG	p.E138A		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	138					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			CTCTACAAACTCATAGCGAAC	0.428000												
PIK3CA	5290	broad.mit.edu	37	3	178941911	178941911	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:178941911T>A	uc003fjk.2	+	15	2387	c.2230T>A	c.(2230-2232)TTC>ATC	p.F744I		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	744					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			GCGACCAGATTTCATGGATGC	0.358000		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)		
PEX5L	51555	broad.mit.edu	37	3	179525470	179525470	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:179525470G>A	uc003fki.1	-	14	1798	c.1668C>T	c.(1666-1668)GGC>GGT	p.G556G	PEX5L_uc011bqd.1_Silent_p.G513G|PEX5L_uc011bqe.1_Silent_p.G364G|PEX5L_uc011bqf.1_Silent_p.G448G|PEX5L_uc003fkj.1_Silent_p.G521G|PEX5L_uc010hxd.1_Silent_p.G554G|PEX5L_uc011bqg.1_Silent_p.G532G|PEX5L_uc011bqh.1_Silent_p.G497G	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	556	TPR 5.				protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			ACCTGTAGGCGCCCAGGTTGA	0.527000												
MCCC1	56922	broad.mit.edu	37	3	182755192	182755192	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:182755192A>G	uc003fle.2	-	13	1545	c.1408T>C	c.(1408-1410)TTA>CTA	p.L470L	MCCC1_uc010hxi.2_Intron|MCCC1_uc011bqo.1_RNA|MCCC1_uc003flf.2_Silent_p.L353L|MCCC1_uc003flg.2_Silent_p.L361L|MCCC1_uc011bqp.1_Silent_p.L423L	NM_020166	NP_064551	Q96RQ3	MCCA_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	470	Biotin carboxylation.				biotin metabolic process|leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.84e-14)|Ovarian(172;0.0355)		all cancers(12;1.8e-44)|Epithelial(37;3.23e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;5.07e-21)		Biotin(DB00121)	AGGTTGAGTAAGAAGTCAATG	0.478000												
ABCC5	10057	broad.mit.edu	37	3	183669329	183669329	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:183669329A>G	uc003fmg.2	-	20	3009	c.2844T>C	c.(2842-2844)CAT>CAC	p.H948H	ABCC5_uc011bqt.1_Silent_p.H476H|ABCC5_uc010hxl.2_Silent_p.H948H	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	948	ABC transmembrane type-1 2.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			AAAGCTCGTCATGCAGCCGGG	0.567000												
EPHB3	2049	broad.mit.edu	37	3	184294690	184294690	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:184294690A>C	uc003foz.2	+	5	1510	c.1073A>C	c.(1072-1074)GAG>GCG	p.E358A		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	358	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			CTGATCCTCGAGTGGAGTGAG	0.602000												
EPHB3	2049	broad.mit.edu	37	3	184297675	184297675	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:184297675A>C	uc003foz.2	+	11	2562	c.2125A>C	c.(2125-2127)ATC>CTC	p.I709L		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	709	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			GCCAGTTATGATCCTCACTGA	0.592000												
IGF2BP2	10644	broad.mit.edu	37	3	185390359	185390359	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:185390359A>T	uc003fpo.2	-	10	1249	c.1170T>A	c.(1168-1170)GCT>GCA	p.A390A	IGF2BP2_uc010hyi.2_Silent_p.A333A|IGF2BP2_uc010hyj.2_Silent_p.A327A|IGF2BP2_uc010hyk.2_Silent_p.A254A|IGF2BP2_uc010hyl.2_Intron|IGF2BP2_uc003fpp.2_Intron|IGF2BP2_uc003fpq.2_Silent_p.A395A	NM_006548	NP_006539	Q9Y6M1	IF2B2_HUMAN	insulin-like growth factor 2 mRNA binding	390					anatomical structure morphogenesis|negative regulation of translation	cytoskeletal part|cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity				0	all_cancers(143;5.84e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			CAGCGGGGGGAGCTCCGCGGG	0.597000												
ETV5	2119	broad.mit.edu	37	3	185766624	185766624	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:185766624T>G	uc003fpz.2	-	13	1584	c.1337A>C	c.(1336-1338)AAA>ACA	p.K446T	ETV5_uc003fpy.2_Missense_Mutation_p.K488T	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)	446	ETS.				cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			ACAGACAAATTTGTAGACGTA	0.572000			T	TMPRSS2|SCL45A3	Prostate 							
DNAJB11	51726	broad.mit.edu	37	3	186290034	186290034	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:186290034T>G	uc003fqi.2	+	2	439	c.219T>G	c.(217-219)GCT>GCG	p.A73A	TBCCD1_uc011bry.1_5'Flank|TBCCD1_uc003fqh.2_5'Flank	NM_016306	NP_057390	Q9UBS4	DJB11_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 11	73	J.				protein folding	endoplasmic reticulum lumen	heat shock protein binding			ovary(1)|lung(1)	2	all_cancers(143;2.84e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.44e-20)	GBM - Glioblastoma multiforme(93;0.0476)		TGGGTGCTGCTTATGAGGTGA	0.418000												
RPL39L	116832	broad.mit.edu	37	3	186839075	186839075	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:186839075T>A	uc003fre.1	-	3	369	c.14A>T	c.(13-15)AAG>ATG	p.K5M	RPL39L_uc003frf.1_RNA	NM_052969	NP_443201	Q96EH5	RL39L_HUMAN	ribosomal protein L39-like protein	5					spermatogenesis|translation	cytosolic large ribosomal subunit	structural constituent of ribosome				0	all_cancers(143;2.61e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.87e-18)	GBM - Glioblastoma multiforme(93;0.0745)		GGTGAAAGTCTTGTGAGAAGA	0.448000												
TMEM207	131920	broad.mit.edu	37	3	190167579	190167579	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:190167579A>G	uc003fsj.2	-	1	87	c.20T>C	c.(19-21)TTC>TCC	p.F7S		NM_207316	NP_997199	Q6UWW9	TM207_HUMAN	transmembrane protein 207 precursor	7						integral to membrane					0	all_cancers(143;3.61e-10)|Ovarian(172;0.0991)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.0176)		GGTGACACTGAAAAGTCTGGA	0.413000												
ATP13A4	84239	broad.mit.edu	37	3	193156311	193156311	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:193156311A>C	uc003ftd.2	-	23	2733	c.2625T>G	c.(2623-2625)CCT>CCG	p.P875P	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	875	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		TGGAAGTGAAAGGTGAGGCCA	0.448000												
ZDHHC19	131540	broad.mit.edu	37	3	195937536	195937536	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr3:195937536G>A	uc003fwc.2	-	2	333	c.219C>T	c.(217-219)TTC>TTT	p.F73F	ZDHHC19_uc010hzz.2_RNA|ZDHHC19_uc010iaa.2_Intron|ZDHHC19_uc010iab.2_RNA	NM_001039617	NP_001034706	Q8WVZ1	ZDH19_HUMAN	zinc finger, DHHC domain containing 19	73	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			ovary(3)	3	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.89e-25)|all cancers(36;1.46e-23)|OV - Ovarian serous cystadenocarcinoma(49;2.1e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0022)		CAAGACTGAAGAAGGTAAGGA	0.552000												
ZNF595	152687	broad.mit.edu	37	4	87142	87142	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:87142A>C	uc003fzv.1	+	6	1904	c.1748A>C	c.(1747-1749)AAG>ACG	p.K583T	ZNF595_uc003fzu.1_Intron|ZNF718_uc003fzt.3_Intron|ZNF595_uc011bus.1_Missense_Mutation_p.K351T|ZNF595_uc011but.1_Missense_Mutation_p.K351T	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	583					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		ACTAAACATAAGAGAATTCAT	0.378000												
SLBP	7884	broad.mit.edu	37	4	1696553	1696553	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:1696553A>C	uc003gdi.1	-	7	759	c.644T>G	c.(643-645)CTT>CGT	p.L215R	SLBP_uc010ibx.1_Missense_Mutation_p.L222R|SLBP_uc003gdj.1_Missense_Mutation_p.L195R|SLBP_uc003gdk.1_Missense_Mutation_p.L176R|SLBP_uc011bvf.1_Missense_Mutation_p.L180R|SLBP_uc003gdl.1_Missense_Mutation_p.L132R	NM_006527	NP_006518	Q14493	SLBP_HUMAN	stem-loop (histone) binding protein	215					DNA replication involved in S phase|histone mRNA 3'-end processing|mRNA export from nucleus|regulation of S phase|termination of RNA polymerase II transcription	cytosol|histone pre-mRNA 3'end processing complex|nucleoplasm	histone pre-mRNA DCP binding|histone pre-mRNA stem-loop binding|protein binding				0		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.0055)			TGCAGATTCAAGGTCTACAGG	0.493000												
AFAP1	60312	broad.mit.edu	37	4	7774589	7774589	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:7774589C>T	uc003gkg.1	-	15	2232	c.1959G>A	c.(1957-1959)CTG>CTA	p.L653L	AFAP1_uc011bwk.1_Silent_p.L737L|LOC84740_uc003gkd.3_RNA	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	653						actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						TGGCCAGCCCCAGGGTGACTC	0.672000												
CPZ	8532	broad.mit.edu	37	4	8621297	8621297	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:8621297T>C	uc003glm.2	+	11	2038	c.1912T>C	c.(1912-1914)TTC>CTC	p.F638L	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.F501L|CPZ_uc003glo.2_Missense_Mutation_p.F627L|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	638					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						GTGGTCCTACTTCACATCGCT	0.701000												
CD38	952	broad.mit.edu	37	4	15826541	15826541	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:15826541A>G	uc011bxc.1	+	3	508	c.401A>G	c.(400-402)CAG>CGG	p.Q134R	CD38_uc003goj.1_Missense_Mutation_p.Q134R|CD38_uc003gol.1_Missense_Mutation_p.Q134R	NM_001775	NP_001766	P28907	CD38_HUMAN	CD38 antigen	134	Extracellular (Potential).				B cell receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of apoptosis|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of transcription, DNA-dependent|response to drug	integral to membrane|plasma membrane	binding|NAD+ nucleosidase activity|receptor activity			ovary(2)	2						CTGGCCCATCAGTTCACACAG	0.378000												
LAP3	51056	broad.mit.edu	37	4	17586723	17586723	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:17586723T>A	uc003gph.1	+	6	830	c.668T>A	c.(667-669)CTC>CAC	p.L223H	LAP3_uc010ieg.2_3'UTR	NM_015907	NP_056991	P28838	AMPL_HUMAN	leucine aminopeptidase 3	223					proteolysis	nucleus	aminopeptidase activity|magnesium ion binding|manganese ion binding|metalloexopeptidase activity|zinc ion binding				0						GAGAAGAATCTCAAAAGTGCT	0.343000												
LGI2	55203	broad.mit.edu	37	4	25028556	25028556	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:25028556A>C	uc003grf.2	-	3	374	c.275T>G	c.(274-276)CTG>CGG	p.L92R		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	92	LRR 1.					extracellular region					0		Breast(46;0.173)				GTTAGAATTCAGCAATCTGAA	0.383000												
RBPJ	3516	broad.mit.edu	37	4	26430438	26430438	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:26430438A>C	uc003grx.1	+	9	1119	c.883A>C	c.(883-885)AGA>CGA	p.R295R	RBPJ_uc003gry.1_Silent_p.R280R|RBPJ_uc003grz.1_Silent_p.R295R|RBPJ_uc011bxt.1_Silent_p.R295R|RBPJ_uc003gsa.1_Silent_p.R281R|RBPJ_uc003gsb.1_Silent_p.R282R|RBPJ_uc003gsc.1_Silent_p.R281R	NM_005349	NP_005340	Q06330	SUH_HUMAN	recombining binding protein suppressor of	295					DNA recombination|negative regulation of transcription, DNA-dependent|positive regulation of transcription of Notch receptor target	cytoplasm|nucleolus|nucleoplasm	DNA binding|protein binding|recombinase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)	3		Breast(46;0.0503)				GGATACAGAAAGAATGTATTT	0.333000												
TLR10	81793	broad.mit.edu	37	4	38776650	38776650	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:38776650A>C	uc003gti.2	-	2	941	c.562T>G	c.(562-564)TTA>GTA	p.L188V	TLR10_uc003gtj.2_Missense_Mutation_p.L188V|TLR10_uc003gtk.2_Missense_Mutation_p.L188V	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	188	Extracellular (Potential).				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						GTTGTGTTTAAGATGGGCAGG	0.348000												
RFC1	5981	broad.mit.edu	37	4	39301996	39301996	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:39301996T>C	uc003gty.1	-	20	2711	c.2577A>G	c.(2575-2577)GGA>GGG	p.G859G	RFC1_uc003gtx.1_Silent_p.G858G	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	859					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						CAGTCTCCTCTCCAGCTGCAA	0.348000												
RBM47	54502	broad.mit.edu	37	4	40439938	40439938	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:40439938A>G	uc003gvc.2	-	4	1683	c.973T>C	c.(973-975)TCG>CCG	p.S325P	RBM47_uc003gvd.2_Missense_Mutation_p.S325P|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.S287P|RBM47_uc003gvg.1_Missense_Mutation_p.S325P	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	325						nucleus	nucleotide binding|RNA binding			breast(3)	3						TGGTAGCGCGAGTACTGCTCC	0.662000												
PHOX2B	8929	broad.mit.edu	37	4	41748224	41748224	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:41748224T>G	uc003gwf.3	-	3	905	c.545A>C	c.(544-546)GAC>GCC	p.D182A		NM_003924	NP_003915	Q99453	PHX2B_HUMAN	paired-like homeobox 2b	182					positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			autonomic_ganglia(7)|lung(2)|ovary(2)|central_nervous_system(1)	12						TTTGCTCTCGTCGTCCCTGGA	0.647000			Mis|F		neuroblastoma	neuroblastoma	congenital central hypoventilation syndrome		Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome			
DCAF4L1	285429	broad.mit.edu	37	4	41984471	41984471	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:41984471T>G	uc003gwk.2	+	1	759	c.662T>G	c.(661-663)TTT>TGT	p.F221C		NM_001029955	NP_001025126	Q3SXM0	DC4L1_HUMAN	WD repeat domain 21B	221										skin(1)	1						CAGCAGTCATTTGATACCAGC	0.552000												
GABRB1	2560	broad.mit.edu	37	4	47322225	47322225	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:47322225T>A	uc003gxh.2	+	5	917	c.543T>A	c.(541-543)AGT>AGA	p.S181R	GABRB1_uc011bze.1_Missense_Mutation_p.S111R	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	181	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	AGATCGAAAGTTGTGAGTTAC	0.433000												
LRRC66	339977	broad.mit.edu	37	4	52861969	52861969	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:52861969T>G	uc003gzi.2	-	4	1232	c.1219A>C	c.(1219-1221)AAA>CAA	p.K407Q		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	407						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						TGGCACTTTTTTTGCCACAGT	0.557000												
KDR	3791	broad.mit.edu	37	4	55962481	55962481	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:55962481A>G	uc003has.2	-	19	2945	c.2643T>C	c.(2641-2643)GCT>GCC	p.A881A	KDR_uc003hat.1_Silent_p.A881A	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	881	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CAGACATGAGAGCTCGATGCT	0.468000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)		
MUC7	4589	broad.mit.edu	37	4	71346711	71346711	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:71346711T>G	uc011cat.1	+	4	538	c.250T>G	c.(250-252)TTC>GTC	p.F84V	MUC7_uc011cau.1_Missense_Mutation_p.F84V|MUC7_uc003hfj.2_Missense_Mutation_p.F84V|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	84						extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			CCCCCCCAAATTCCCAAATCC	0.463000												
SLC4A4	8671	broad.mit.edu	37	4	72413427	72413427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:72413427C>T	uc003hfy.2	+	20	2801	c.2684C>T	c.(2683-2685)CCC>CTC	p.P895L	SLC4A4_uc010iic.2_Missense_Mutation_p.P895L|SLC4A4_uc010iib.2_Intron|SLC4A4_uc003hfz.2_Missense_Mutation_p.P895L|SLC4A4_uc003hgc.3_Missense_Mutation_p.P851L|SLC4A4_uc010iid.2_Missense_Mutation_p.P99L	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	895	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			TTTATGGCTCCCATCTTGAAG	0.388000												
PARM1	25849	broad.mit.edu	37	4	75937967	75937967	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:75937967A>C	uc003hih.1	+	2	616	c.376A>C	c.(376-378)AGC>CGC	p.S126R		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	126	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						GGAGGAACACAGCTCGGGCAC	0.587000												
C4orf26	152816	broad.mit.edu	37	4	76489614	76489614	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:76489614A>C	uc003hip.1	+	2	393	c.358A>C	c.(358-360)AGA>CGA	p.R120R	C4orf26_uc011cbn.1_RNA|C4orf26_uc011cbo.1_Missense_Mutation_p.E134D	NM_178497	NP_848592	Q17RF5	CD026_HUMAN	hypothetical protein LOC152816 precursor	120						extracellular region					0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			CCCCAGAAGAAGACTCCAGAG	0.428000												
CDKL2	8999	broad.mit.edu	37	4	76532367	76532367	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:76532367T>C	uc003hiq.2	-	4	1067	c.542A>G	c.(541-543)AAG>AGG	p.K181R	CDKL2_uc011cbp.1_Missense_Mutation_p.K181R|CDKL2_uc010iix.1_Intron	NM_003948	NP_003939	Q92772	CDKL2_HUMAN	cyclin-dependent kinase-like 2	181	Protein kinase.				sex differentiation|signal transduction	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(2)|stomach(2)|breast(2)|skin(1)	7			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			GATGTCTTACTTGCCATACTT	0.418000												
CXCL10	3627	broad.mit.edu	37	4	76944543	76944543	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:76944543C>T	uc003hjl.3	-	1	112	c.42G>A	c.(40-42)CTG>CTA	p.L14L	ART3_uc003hji.2_Intron|ART3_uc003hjj.2_Intron|ART3_uc003hjk.2_Intron	NM_001565	NP_001556	P02778	CXL10_HUMAN	small inducible cytokine B10 precursor	14					blood circulation|cell surface receptor linked signaling pathway|cell-cell signaling|chemotaxis|inflammatory response|muscle organ development|positive regulation of cell proliferation	extracellular space	cAMP-dependent protein kinase regulator activity|chemokine activity				0			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			CACTTAGAGTCAGAAAGATAA	0.358000												
ART3	419	broad.mit.edu	37	4	77003337	77003337	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:77003337A>T	uc003hjo.2	+	3	549	c.430A>T	c.(430-432)AGA>TGA	p.R144*	ART3_uc003hji.2_Nonsense_Mutation_p.R144*|ART3_uc003hjj.2_Nonsense_Mutation_p.R144*|ART3_uc003hjk.2_Nonsense_Mutation_p.R144*|ART3_uc010ija.1_Nonsense_Mutation_p.R144*|ART3_uc003hjn.2_Nonsense_Mutation_p.R144*|ART3_uc003hjp.2_Intron|ART3_uc010ijb.2_Intron|ART3_uc003hjq.2_Intron|ART3_uc003hjr.2_Nonsense_Mutation_p.R114*|ART3_uc010ijc.2_Nonsense_Mutation_p.R114*|ART3_uc010ijd.2_Nonsense_Mutation_p.R114*	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	144					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity			ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TTACCTCACAAGAGCCCTGCA	0.443000												
FRAS1	80144	broad.mit.edu	37	4	79308837	79308837	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:79308837A>C	uc003hlb.2	+	29	4397	c.3957A>C	c.(3955-3957)CAA>CAC	p.Q1319H	FRAS1_uc003hkw.2_Missense_Mutation_p.Q1319H	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1318	CSPG 3.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TACTGTTCCAAGTGAAGACCG	0.438000												
FRAS1	80144	broad.mit.edu	37	4	79369367	79369367	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:79369367T>C	uc003hlb.2	+	44	6611	c.6171T>C	c.(6169-6171)ACT>ACC	p.T2057T		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2056	CSPG 8.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCTCCCTCACTGATGGCCTCC	0.542000												
ANTXR2	118429	broad.mit.edu	37	4	80905052	80905052	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:80905052C>T	uc003hlz.3	-	14	1922	c.1159G>A	c.(1159-1161)GGA>AGA	p.G387R	ANTXR2_uc003hly.3_Missense_Mutation_p.G387R|ANTXR2_uc003hlx.1_RNA|ANTXR2_uc010ijn.2_Missense_Mutation_p.G284R	NM_001145794	NP_001139266	P58335	ANTR2_HUMAN	anthrax toxin receptor 2 isoform 2	387	Cytoplasmic (Potential).					endoplasmic reticulum membrane|extracellular region|integral to membrane|plasma membrane	metal ion binding|protein binding|receptor activity			ovary(1)	1						TTAATTCCTCCAACCCCTCGA	0.358000									Juvenile_Hyaline_Fibromatosis			
PRKG2	5593	broad.mit.edu	37	4	82088337	82088337	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:82088337T>G	uc003hmh.2	-	5	904	c.890A>C	c.(889-891)AAG>ACG	p.K297T	PRKG2_uc011cch.1_Missense_Mutation_p.K297T	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	297	cGMP 2.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						GTCAATGATCTTGGTTAATTT	0.249000												
SCD5	79966	broad.mit.edu	37	4	83552614	83552614	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:83552614A>C	uc003hna.2	-	5	1179	c.859T>G	c.(859-861)TTT>GTT	p.F287V		NM_001037582	NP_001032671	Q86SK9	SCD5_HUMAN	stearoyl-CoA desaturase 5 isoform a	287					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity			ovary(1)	1		Colorectal(4;0.0323)|Hepatocellular(203;0.115)				TTTAAGCCAAATTCACTCGCA	0.483000												
THAP9	79725	broad.mit.edu	37	4	83839152	83839152	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:83839152T>G	uc003hnt.2	+	5	1906	c.1787T>G	c.(1786-1788)GTC>GGC	p.V596G	THAP9_uc003hns.1_Missense_Mutation_p.V452G|THAP9_uc003hnu.1_RNA|THAP9_uc003hnv.2_Missense_Mutation_p.V313G	NM_024672	NP_078948	Q9H5L6	THAP9_HUMAN	THAP domain containing 9	596							DNA binding|metal ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	5		Hepatocellular(203;0.114)				TTCCCAAAGGTCATGCCTTTT	0.348000												
HPSE	10855	broad.mit.edu	37	4	84222200	84222200	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:84222200T>C	uc003hoj.3	-	11	1484	c.1385A>G	c.(1384-1386)AAG>AGG	p.K462R	HPSE_uc010ika.2_Missense_Mutation_p.K404R|HPSE_uc011ccq.1_RNA|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_Missense_Mutation_p.K205R|HPSE_uc011cct.1_Missense_Mutation_p.K388R|HPSE_uc003hok.3_Missense_Mutation_p.K462R	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	462					carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	CCGCAAGTACTTGGTGACATT	0.348000												
MAPK10	5602	broad.mit.edu	37	4	87022315	87022315	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:87022315T>G	uc003hpq.2	-	7	687	c.620A>C	c.(619-621)GAC>GCC	p.D207A	MAPK10_uc010ikg.2_Missense_Mutation_p.D169A|MAPK10_uc003hpr.2_Missense_Mutation_p.D169A|MAPK10_uc003hps.2_Missense_Mutation_p.D207A|MAPK10_uc003hpt.2_Missense_Mutation_p.D207A|MAPK10_uc003hpu.2_Missense_Mutation_p.D207A|MAPK10_uc003hpv.2_Missense_Mutation_p.D62A|MAPK10_uc003hpn.2_5'Flank|MAPK10_uc003hpo.2_Missense_Mutation_p.D62A|MAPK10_uc011ccw.1_Missense_Mutation_p.D93A|MAPK10_uc003hpp.2_Missense_Mutation_p.D62A	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2	207	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		CAGTCCAAAGTCCAGGATTTT	0.438000												
PTPN13	5783	broad.mit.edu	37	4	87622548	87622548	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:87622548T>G	uc003hpz.2	+	7	1269	c.789T>G	c.(787-789)TCT>TCG	p.S263S	PTPN13_uc003hpy.2_Silent_p.S263S|PTPN13_uc003hqa.2_Silent_p.S263S|PTPN13_uc003hqb.2_Silent_p.S263S	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	263						cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		CAGATAATTCTGGACGTGAAG	0.368000												
HSD17B13	345275	broad.mit.edu	37	4	88234976	88234976	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:88234976T>G	uc003hqo.2	-	5	757	c.694A>C	c.(694-696)AGA>CGA	p.R232R	HSD17B13_uc010ikk.2_Silent_p.R196R	NM_178135	NP_835236	Q7Z5P4	DHB13_HUMAN	hydroxysteroid (17-beta) dehydrogenase 13	232						extracellular region	binding|oxidoreductase activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.000308)		TGACCTTACCTTGTGCTTGGA	0.373000												
DMP1	1758	broad.mit.edu	37	4	88583146	88583146	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:88583146A>G	uc003hqv.2	+	6	320	c.216A>G	c.(214-216)TCA>TCG	p.S72S	DMP1_uc003hqw.2_Silent_p.S56S	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	72					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		GCACTCAGTCAGAGGAGGGCC	0.473000												
DMP1	1758	broad.mit.edu	37	4	88584170	88584170	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:88584170T>G	uc003hqv.2	+	6	1344	c.1240T>G	c.(1240-1242)TTC>GTC	p.F414V	DMP1_uc003hqw.2_Missense_Mutation_p.F398V	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	414					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		GAGCCTCAACTTCTCAGAGGA	0.572000												
DMP1	1758	broad.mit.edu	37	4	88584322	88584322	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:88584322A>C	uc003hqv.2	+	6	1496	c.1392A>C	c.(1390-1392)GAA>GAC	p.E464D	DMP1_uc003hqw.2_Missense_Mutation_p.E448D	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	464					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		GATCCAAAGAAGATAGCAACT	0.488000												
HERC6	55008	broad.mit.edu	37	4	89311919	89311919	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:89311919T>G	uc011cdi.1	+	4	735	c.552T>G	c.(550-552)GCT>GCG	p.A184A	HERC6_uc003hrp.1_RNA|HERC6_uc011cdj.1_Silent_p.A184A|HERC6_uc011cdk.1_RNA|HERC6_uc011cdl.1_RNA	NM_017912	NP_060382	Q8IVU3	HERC6_HUMAN	hect domain and RLD 6 isoform 1	184	RCC1 3.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytosol	ubiquitin-protein ligase activity			lung(3)|ovary(1)|kidney(1)	5		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000222)		TCCCACTGGCTCAGGTGGCTG	0.657000												
ADH1B	125	broad.mit.edu	37	4	100232006	100232006	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:100232006T>G	uc003hus.3	-	8	1103	c.1019A>C	c.(1018-1020)AAG>ACG	p.K340T	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.K300T|ADH1B_uc011ceh.1_Missense_Mutation_p.K185T|ADH1B_uc011cei.1_Missense_Mutation_p.K300T	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	340					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	CAGTGAAAACTTCTTAGCCAT	0.358000												
ADH1B	125	broad.mit.edu	37	4	100237376	100237376	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:100237376T>G	uc003hus.3	-	4	427	c.343A>C	c.(343-345)AAT>CAT	p.N115H	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.N75H|ADH1B_uc011ceh.1_Intron|ADH1B_uc011cei.1_Missense_Mutation_p.N75H	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	115					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	ACCTACTCATTTTTCAAGCAG	0.433000												
DKK2	27123	broad.mit.edu	37	4	107846993	107846993	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:107846993T>C	uc003hyi.2	-	2	1041	c.336A>G	c.(334-336)CGA>CGG	p.R112R	DKK2_uc010ilw.1_RNA|DKK2_uc003hyj.1_Silent_p.R112R	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	112	DKK-type Cys-1.				multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space		p.R112G(1)		ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		ACATGCCATCTCGGTGGCAGC	0.498000												
EGF	1950	broad.mit.edu	37	4	110862293	110862293	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:110862293A>C	uc003hzy.3	+	2	771	c.319A>C	c.(319-321)AGG>CGG	p.R107R	EGF_uc011cfu.1_Silent_p.R107R|EGF_uc011cfv.1_Silent_p.R107R	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	107	LDL-receptor class B 1.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	GAATGGGTCAAGGCAAGAGGT	0.323000												
ANK2	287	broad.mit.edu	37	4	114278039	114278039	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:114278039A>C	uc003ibe.3	+	38	8365	c.8265A>C	c.(8263-8265)GAA>GAC	p.E2755D	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Missense_Mutation_p.E57D|ANK2_uc011cgb.1_Missense_Mutation_p.E2770D	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2722					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CTGAGGCTGAAGACAGGTCTT	0.458000												
SEC24D	9871	broad.mit.edu	37	4	119666127	119666127	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:119666127T>G	uc003ici.3	-	14	2068	c.1796A>C	c.(1795-1797)AAA>ACA	p.K599T	SEC24D_uc003ich.3_RNA|SEC24D_uc003icj.3_Missense_Mutation_p.K600T|SEC24D_uc003icl.2_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	599					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						AACCAGTTTTTTGTCATCTCT	0.393000												
SYNPO2	171024	broad.mit.edu	37	4	119951776	119951776	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:119951776T>G	uc003icm.3	+	4	2042	c.1846T>G	c.(1846-1848)TTT>GTT	p.F616V	SYNPO2_uc010ina.2_Missense_Mutation_p.F616V|SYNPO2_uc010inb.2_Missense_Mutation_p.F616V|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.F544V	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	616	Pro-rich.					nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						CATTGCTGACTTTCCTGCACC	0.587000												
KIAA1109	84162	broad.mit.edu	37	4	123091861	123091861	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:123091861T>G	uc003ieh.2	+	1	104	c.59T>G	c.(58-60)CTT>CGT	p.L20R		NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	20					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GAAGATTTTCTTACAGAACAC	0.318000												
IL21	59067	broad.mit.edu	37	4	123542014	123542014	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:123542014A>C	uc003ies.2	-	1	198	c.153T>G	c.(151-153)AAT>AAG	p.N51K	uc003iet.2_Intron|IL21_uc010int.2_Missense_Mutation_p.N44K	NM_021803	NP_068575	Q9HBE4	IL21_HUMAN	interleukin 21	44					cell maturation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-17 production|positive regulation of T cell proliferation|signal transduction	extracellular space	cytokine activity|interleukin-2 receptor binding				0						CATTCACATAATTTTTCAGCT	0.343000												
PHF17	79960	broad.mit.edu	37	4	129767570	129767570	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:129767570A>G	uc003igk.2	+	4	459	c.179A>G	c.(178-180)GAC>GGC	p.D60G	PHF17_uc003igj.2_Missense_Mutation_p.D60G|PHF17_uc003igl.2_Missense_Mutation_p.D60G|PHF17_uc011cgy.1_Missense_Mutation_p.D60G|PHF17_uc003igm.2_Missense_Mutation_p.D60G	NM_199320	NP_955352	Q6IE81	JADE1_HUMAN	PHD finger protein 17 long isoform	60					apoptosis|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell growth|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	histone acetyltransferase complex|mitochondrion	protein binding|zinc ion binding				0						AAGTTGCATGACTCCTACCAG	0.502000												
SMARCA5	8467	broad.mit.edu	37	4	144468627	144468627	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:144468627A>G	uc003ijg.2	+	21	3205	c.2743A>G	c.(2743-2745)ATA>GTA	p.I915V		NM_003601	NP_003592	O60264	SMCA5_HUMAN	SWI/SNF-related matrix-associated	915					CenH3-containing nucleosome assembly at centromere|nucleosome positioning|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	condensed chromosome|nucleolus|nucleoplasm|NURF complex|RSF complex	ATP binding|ATPase activity|DNA binding|helicase activity|nucleosome binding|protein binding			skin(1)	1	all_hematologic(180;0.158)					TCAAAGAAGAATAAGCATCAA	0.383000												
GYPA	2993	broad.mit.edu	37	4	144918742	144918742	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:144918742A>T	uc003ijn.2	-	5	433	c.317T>A	c.(316-318)ATT>AAT	p.I106N	GYPB_uc011chs.1_Intron|GYPB_uc011cht.1_RNA|GYPB_uc011chu.1_RNA|GYPB_uc010ioo.1_Intron|GYPB_uc010iop.2_RNA|GYPB_uc011chv.1_RNA|GYPB_uc011chw.1_Intron|GYPB_uc011chx.1_RNA|GYPB_uc003ijm.1_Missense_Mutation_p.I74N|GYPB_uc011chy.1_RNA|GYPB_uc011chz.1_Intron			P02724	GLPA_HUMAN	SubName: Full=Glycophorin MiX; Flags: Fragment;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					CGTTCCAATAATACCAGCCAT	0.348000												
NR3C2	4306	broad.mit.edu	37	4	149356384	149356384	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:149356384A>C	uc003ilj.3	-	2	1963	c.1629T>G	c.(1627-1629)TCT>TCG	p.S543S	NR3C2_uc003ilk.3_Silent_p.S543S|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	543	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	GGTGTTGGAAAGATTGGTCTC	0.473000												
KIAA0922	23240	broad.mit.edu	37	4	154553945	154553945	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:154553945A>C	uc003inm.3	+	32	4332	c.4280A>C	c.(4279-4281)AAC>ACC	p.N1427T	KIAA0922_uc010ipp.2_Missense_Mutation_p.N1428T|KIAA0922_uc010ipq.2_Missense_Mutation_p.N1196T	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	1427	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				ACCCTGGAGAACGGCGTGCCT	0.537000												
DCHS2	54798	broad.mit.edu	37	4	155243495	155243495	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:155243495A>T	uc003inw.2	-	13	2799	c.2799T>A	c.(2797-2799)GTT>GTA	p.V933V		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	933	Cadherin 7.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GAATATTAACAACTGCCTGTC	0.353000												
NPY2R	4887	broad.mit.edu	37	4	156135225	156135225	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:156135225A>G	uc003ioq.2	+	2	629	c.134A>G	c.(133-135)AAG>AGG	p.K45R	NPY2R_uc003ior.2_Missense_Mutation_p.K45R	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	45	Extracellular (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GATAGTACCAAGCTGATTGAG	0.468000												
HMGB2	3148	broad.mit.edu	37	4	174254250	174254250	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:174254250T>G	uc011ckc.1	-	2	386	c.266A>C	c.(265-267)AAA>ACA	p.K89T	HMGB2_uc003ita.3_Missense_Mutation_p.K89T|HMGB2_uc003itb.2_Missense_Mutation_p.K89T|HMGB2_uc003itc.2_Missense_Mutation_p.K89T	NM_001130689	NP_001124161	P26583	HMGB2_HUMAN	high-mobility group box 2	89					base-excision repair, DNA ligation|cell chemotaxis|cellular response to lipopolysaccharide|DNA fragmentation involved in apoptotic nuclear change|DNA topological change|negative regulation of transcription, DNA-dependent|nucleosome assembly|phosphatidylinositol-mediated signaling|positive regulation of DNA binding|positive regulation of endothelial cell proliferation|positive regulation of erythrocyte differentiation|positive regulation of megakaryocyte differentiation|positive regulation of nuclease activity|positive regulation of transcription from RNA polymerase II promoter|V(D)J recombination	condensed chromosome|extracellular space|nucleolus|nucleoplasm|perinuclear region of cytoplasm|protein complex	chemoattractant activity|damaged DNA binding|DNA bending activity|double-stranded DNA binding|RAGE receptor binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding|transcription regulatory region DNA binding				0		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;9.58e-18)|Epithelial(43;3.75e-16)|OV - Ovarian serous cystadenocarcinoma(60;6.24e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		GGGGTCCTTTTTCTTCCCCTT	0.398000												
FBXO8	26269	broad.mit.edu	37	4	175183927	175183927	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:175183927A>C	uc003itp.2	-	2	1167	c.317T>G	c.(316-318)CTT>CGT	p.L106R	FBXO8_uc003itq.2_Missense_Mutation_p.L65R	NM_012180	NP_036312	Q9NRD0	FBX8_HUMAN	F-box only protein 8	106	F-box.				regulation of ARF protein signal transduction|ubiquitin-dependent protein catabolic process	cytoplasm|ubiquitin ligase complex	ARF guanyl-nucleotide exchange factor activity			breast(2)	2		Prostate(90;0.00201)|Melanoma(52;0.012)|Renal(120;0.0183)|all_neural(102;0.0887)|all_hematologic(60;0.107)		all cancers(43;7.29e-18)|Epithelial(43;1.85e-15)|OV - Ovarian serous cystadenocarcinoma(60;5.62e-09)|GBM - Glioblastoma multiforme(59;0.00115)|STAD - Stomach adenocarcinoma(60;0.00299)|LUSC - Lung squamous cell carcinoma(193;0.1)		TTGCCAGAGAAGTTCATCATT	0.383000												
STOX2	56977	broad.mit.edu	37	4	184938289	184938289	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:184938289A>C	uc003ivz.1	+	4	4068	c.2633A>C	c.(2632-2634)AAC>ACC	p.N878T	uc003iwb.1_5'Flank|STOX2_uc003iwa.1_3'UTR	NM_020225	NP_064610	Q9P2F5	STOX2_HUMAN	storkhead box 2	878					embryo development|maternal placenta development						0		all_lung(41;1.89e-12)|Lung NSC(41;3.48e-12)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|all_hematologic(60;0.027)|Prostate(90;0.0283)		all cancers(43;2.85e-26)|Epithelial(43;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-10)|Colorectal(24;8.23e-06)|GBM - Glioblastoma multiforme(59;1.64e-05)|STAD - Stomach adenocarcinoma(60;3.6e-05)|COAD - Colon adenocarcinoma(29;4.37e-05)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.227)		GTTGAAAGTAACCGTCGTCAG	0.493000												
ENPP6	133121	broad.mit.edu	37	4	185012349	185012349	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr4:185012349A>T	uc003iwc.2	-	8	1446	c.1304T>A	c.(1303-1305)CTT>CAT	p.L435H		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	435	Helical; (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		CAGGAAGAGAAGAATCAGTGC	0.527000												
AHRR	57491	broad.mit.edu	37	5	432582	432582	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:432582A>C	uc003jav.2	+	10	1023	c.979A>C	c.(979-981)AAA>CAA	p.K327Q	AHRR_uc003jaw.2_Missense_Mutation_p.K305Q|AHRR_uc010isy.2_Missense_Mutation_p.K155Q|AHRR_uc010isz.2_Missense_Mutation_p.K305Q|AHRR_uc003jax.2_Missense_Mutation_p.K68Q|AHRR_uc003jay.2_Missense_Mutation_p.K165Q|AHRR_uc003jaz.2_5'UTR	NM_020731	NP_065782	A9YTQ3	AHRR_HUMAN	arylhydrocarbon receptor repressor	309					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			breast(2)	2			Epithelial(17;0.0011)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00354)|Lung(60;0.0863)			TCACAGAGTAAAAGCCACCAC	0.398000												
ADAMTS16	170690	broad.mit.edu	37	5	5319213	5319213	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:5319213A>G	uc003jdl.2	+	23	3775	c.3637A>G	c.(3637-3639)AAG>GAG	p.K1213E		NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1213	PLAC.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						GTTCTACGGCAAGCAGTGCTG	0.517000												
TAS2R1	50834	broad.mit.edu	37	5	9629253	9629253	+	Missense_Mutation	SNP	A	A	C	rs140442651	by1000genomes	TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:9629253A>C	uc003jem.1	-	1	1211	c.892T>G	c.(892-894)TGT>GGT	p.C298G		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	298	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						TCTCACTGACAGCACTTACTG	0.413000												
DNAH5	1767	broad.mit.edu	37	5	13876847	13876847	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:13876847T>C	uc003jfd.2	-	22	3384	c.3342A>G	c.(3340-3342)AAA>AAG	p.K1114K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1114	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTACAATCTCTTTGTTTTCAG	0.368000									Kartagener_syndrome			
DNAH5	1767	broad.mit.edu	37	5	13894825	13894825	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:13894825A>C	uc003jfd.2	-	16	2407	c.2365T>G	c.(2365-2367)TTG>GTG	p.L789V		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	789	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGTGCAGCCAAGCCAGGTTGG	0.413000									Kartagener_syndrome			
FAM105A	54491	broad.mit.edu	37	5	14602336	14602336	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:14602336A>C	uc003jfj.2	+	5	506	c.393A>C	c.(391-393)CGA>CGC	p.R131R		NM_019018	NP_061891	Q9NUU6	F105A_HUMAN	hypothetical protein LOC54491	131										ovary(1)	1	Lung NSC(4;0.00592)					AATGTGTTCGACAAGTAAGGA	0.353000												
CDH9	1007	broad.mit.edu	37	5	26890056	26890056	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:26890056T>G	uc003jgs.1	-	9	1570	c.1401A>C	c.(1399-1401)AAA>AAC	p.K467N	CDH9_uc011cnv.1_Missense_Mutation_p.K60N	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	467	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GGCTACTTTGTTTTGGGTTAT	0.383000												
ADAMTS12	81792	broad.mit.edu	37	5	33684103	33684103	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:33684103T>G	uc003jia.1	-	4	855	c.692A>C	c.(691-693)AAC>ACC	p.N231T	ADAMTS12_uc010iuq.1_Missense_Mutation_p.N231T	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	231					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GCTTGGCAAGTTGTGCCTCTC	0.493000										HNSCC(64;0.19)		
SPEF2	79925	broad.mit.edu	37	5	35649522	35649522	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:35649522A>G	uc003jjo.2	+	6	897	c.786A>G	c.(784-786)AAA>AAG	p.K262K	SPEF2_uc003jjn.1_Silent_p.K262K|SPEF2_uc003jjq.3_Silent_p.K262K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	262					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCCAAGCAAAAGAAAGGTGAG	0.323000												
NIPBL	25836	broad.mit.edu	37	5	37010309	37010309	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:37010309A>C	uc003jkl.3	+	21	5041	c.4542A>C	c.(4540-4542)GAA>GAC	p.E1514D	NIPBL_uc003jkk.3_Missense_Mutation_p.E1514D	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	1514					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			CTAATGCAGAAGAAGATTCAA	0.318000												
C5orf42	65250	broad.mit.edu	37	5	37179471	37179471	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:37179471A>C	uc011cpa.1	-	29	6043	c.5812T>G	c.(5812-5814)TTA>GTA	p.L1938V	C5orf42_uc011coy.1_Missense_Mutation_p.L438V|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.L1013V	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	1938										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			ACTTCTTCTAACTGCTGTGGT	0.299000												
LIFR	3977	broad.mit.edu	37	5	38484884	38484884	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:38484884G>A	uc010ive.1	-	18	2916	c.2584C>T	c.(2584-2586)CGA>TGA	p.R862*	LIFR_uc003jli.2_Nonsense_Mutation_p.R862*	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	862	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TACCATTCTCGTTTCCGATAG	0.363000			T	PLAG1	salivary adenoma							
MGC42105	167359	broad.mit.edu	37	5	43245956	43245956	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:43245956A>C	uc003jno.2	+	2	960	c.79A>C	c.(79-81)AGT>CGT	p.S27R		NM_153361	NP_699192	Q8IY84	NIM1_HUMAN	serine/threonine-protein kinase NIM1	27							ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|stomach(1)|large_intestine(1)|breast(1)	9						CAGTGTAGAAAGTGGCTGTCA	0.597000												
IPO11	51194	broad.mit.edu	37	5	61762980	61762980	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:61762980T>G	uc003jtc.2	+	6	729	c.539T>G	c.(538-540)TTT>TGT	p.F180C	IPO11_uc011cqr.1_Missense_Mutation_p.F220C|IPO11_uc003jtb.1_Missense_Mutation_p.F180C	NM_016338	NP_057422	Q9UI26	IPO11_HUMAN	Ran binding protein 11 isoform 2	180						cytoplasm|nucleus	protein binding			lung(2)|skin(2)	4		Lung NSC(810;8.99e-06)|Prostate(74;0.0235)|Ovarian(174;0.0511)|Breast(144;0.077)		Lung(70;0.0613)		ATTTATAATTTTGCCTGCTCT	0.343000												
SLC30A5	64924	broad.mit.edu	37	5	68423839	68423839	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:68423839A>C	uc003jvh.2	+	15	2208	c.2007A>C	c.(2005-2007)AAA>AAC	p.K669N	SLC30A5_uc003jvj.2_RNA|SLC30A5_uc003jvk.2_Intron	NM_022902	NP_075053	Q8TAD4	ZNT5_HUMAN	solute carrier family 30 (zinc transporter),	669	Cytoplasmic (Potential).				cellular zinc ion homeostasis|cobalt ion transport|regulation of proton transport|response to zinc ion	apical plasma membrane|Golgi apparatus|integral to plasma membrane|membrane fraction|secretory granule membrane	zinc ion binding|zinc ion transmembrane transporter activity			central_nervous_system(1)	1		Lung NSC(167;0.000986)|Prostate(74;0.00809)|Colorectal(97;0.0508)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;1.24e-56)|Epithelial(20;1.12e-52)|all cancers(19;2.63e-48)|Lung(70;0.0177)		AGATACAGAAAATTGAAGGAT	0.373000												
RAD17	5884	broad.mit.edu	37	5	68687699	68687699	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:68687699A>T	uc003jwo.2	+	10	1143	c.1081A>T	c.(1081-1083)AAA>TAA	p.K361*	RAD17_uc003jwg.2_Nonsense_Mutation_p.K350*|RAD17_uc003jwh.2_Nonsense_Mutation_p.K350*|RAD17_uc003jwi.2_Nonsense_Mutation_p.K350*|RAD17_uc003jwj.2_Nonsense_Mutation_p.K350*|RAD17_uc003jwk.2_Nonsense_Mutation_p.K350*|RAD17_uc003jwl.2_Nonsense_Mutation_p.K350*|RAD17_uc003jwm.2_Nonsense_Mutation_p.K185*|RAD17_uc003jwn.2_Nonsense_Mutation_p.K264*|RAD17_uc003jwp.2_5'Flank	NM_133339	NP_579917	O75943	RAD17_HUMAN	RAD17 homolog isoform 2	361					cell cycle|DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint|mitotic cell cycle checkpoint|negative regulation of DNA replication|regulation of phosphorylation	nucleoplasm	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Lung NSC(167;5.19e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;9.36e-57)|Epithelial(20;1.21e-52)|all cancers(19;3.34e-48)|Lung(70;0.0183)		AATGTCTTTAAAATCAGATGC	0.308000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes				
BDP1	55814	broad.mit.edu	37	5	70818663	70818663	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:70818663A>C	uc003kbp.1	+	24	5537	c.5274A>C	c.(5272-5274)AAA>AAC	p.K1758N	BDP1_uc003kbo.2_Missense_Mutation_p.K1758N|BDP1_uc003kbq.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1758					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		CTTTGGCAAAAATAGATGCGG	0.383000												
ZNF366	167465	broad.mit.edu	37	5	71756638	71756638	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:71756638A>G	uc003kce.1	-	2	872	c.686T>C	c.(685-687)GTG>GCG	p.V229A		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	229					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		CACCCTCTCCACCTTCTGCTT	0.647000												
POLK	51426	broad.mit.edu	37	5	74872668	74872668	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:74872668T>G	uc003kdw.2	+	6	700	c.604T>G	c.(604-606)TTG>GTG	p.L202V	POLK_uc003kdx.2_RNA|POLK_uc003kdy.2_RNA|POLK_uc003kea.2_Missense_Mutation_p.L202V|POLK_uc003keb.2_Missense_Mutation_p.L202V|POLK_uc010izq.2_Missense_Mutation_p.L202V|POLK_uc003kec.2_Missense_Mutation_p.L112V|POLK_uc010izr.2_RNA|POLK_uc010izs.2_RNA|POLK_uc003ked.2_Missense_Mutation_p.L112V|POLK_uc003kee.2_Missense_Mutation_p.L202V|POLK_uc003kef.2_Missense_Mutation_p.L112V	NM_016218	NP_057302	Q9UBT6	POLK_HUMAN	DNA-directed DNA polymerase kappa	202	UmuC.				DNA replication|nucleotide-excision repair, DNA gap filling	nucleus	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			ovary(2)|kidney(2)	4		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;2.9e-54)|all cancers(79;1.27e-42)		TGAAGCCTACTTGAATATAAC	0.333000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage				
F2R	2149	broad.mit.edu	37	5	76029324	76029324	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:76029324C>T	uc003ken.3	+	2	1539	c.1274C>T	c.(1273-1275)ACT>ATT	p.T425I		NM_001992	NP_001983	P25116	PAR1_HUMAN	coagulation factor II receptor precursor	425	Cytoplasmic (Potential).				activation of caspase activity|anatomical structure morphogenesis|connective tissue replacement involved in inflammatory response wound healing|negative regulation of cell proliferation|platelet activation|positive regulation of blood coagulation|positive regulation of cell migration|positive regulation of collagen biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JAK-STAT cascade|positive regulation of MAPKKK cascade|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of transcription, DNA-dependent|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	caveola|extracellular region|Golgi apparatus|integral to plasma membrane|platelet dense tubular network	receptor binding|thrombin receptor activity			ovary(3)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)	Streptokinase(DB00086)	AAGCTGTTAACTTAGGAAAAG	0.393000												
WDR41	55255	broad.mit.edu	37	5	76732142	76732142	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:76732142T>C	uc003kff.1	-	12	1458	c.1171A>G	c.(1171-1173)ACT>GCT	p.T391A	WDR41_uc011csy.1_Missense_Mutation_p.T333A|WDR41_uc011csz.1_Missense_Mutation_p.T336A	NM_018268	NP_060738	Q9HAD4	WDR41_HUMAN	WD repeat domain 41	391											0		all_lung(232;0.000961)|Lung NSC(167;0.0011)|Ovarian(174;0.0105)|Prostate(461;0.059)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-50)|Epithelial(54;2.04e-44)|all cancers(79;6.84e-40)		GAACATGAAGTAGCATTTTCT	0.398000												
BHMT	635	broad.mit.edu	37	5	78426886	78426886	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:78426886A>G	uc003kfu.3	+	8	1273	c.1168A>G	c.(1168-1170)ACT>GCT	p.T390A	BHMT_uc011cti.1_Missense_Mutation_p.T237A	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	390					protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	AGAAGCCACAACTGAGCAGCA	0.463000												
CMYA5	202333	broad.mit.edu	37	5	79025083	79025083	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:79025083A>C	uc003kgc.2	+	2	567	c.495A>C	c.(493-495)AAA>AAC	p.K165N		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	165						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CAACAAACAAAAAAGGCAGTC	0.388000												
THBS4	7060	broad.mit.edu	37	5	79372825	79372825	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:79372825A>G	uc003kgh.2	+	17	2363	c.2040A>G	c.(2038-2040)CCA>CCG	p.P680P	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	680	TSP type-3 7.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		CCCCTGGACCAGACAACTGCC	0.582000												
SPZ1	84654	broad.mit.edu	37	5	79616290	79616290	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:79616290T>G	uc003kgn.2	+	1	501	c.256T>G	c.(256-258)TTT>GTT	p.F86V	uc011ctk.1_RNA	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	86	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		TATGGCAGGTTTTGAAGAGAA	0.338000												
TRIM36	55521	broad.mit.edu	37	5	114480405	114480405	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:114480405T>G	uc003kqs.2	-	4	1170	c.661A>C	c.(661-663)AAC>CAC	p.N221H	TRIM36_uc011cwc.1_Missense_Mutation_p.N209H|TRIM36_uc003kqt.2_Missense_Mutation_p.N66H	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	221	B box-type 2.					acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		CAGTACATGTTTATTCTCTCT	0.378000												
ATG12	9140	broad.mit.edu	37	5	115173356	115173356	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:115173356T>G	uc003krh.2	-	2	519	c.410A>C	c.(409-411)AAG>ACG	p.K137T	ATG12_uc003kri.2_Intron|ATG12_uc003krj.2_RNA	NM_004707	NP_004698	O94817	ATG12_HUMAN	APG12 autophagy 12-like	90					autophagic vacuole assembly|negative regulation of type I interferon production	pre-autophagosomal structure membrane	protein binding				0		all_cancers(142;0.00377)|all_epithelial(76;0.000129)|Prostate(80;0.0132)|Ovarian(225;0.0776)|Lung NSC(810;0.245)		OV - Ovarian serous cystadenocarcinoma(64;7.59e-08)|Epithelial(69;7.05e-07)|all cancers(49;3.11e-05)		TTTAAGAAACTTTTTGATGAA	0.398000												
HSD17B4	3295	broad.mit.edu	37	5	118829639	118829640	+	Missense_Mutation	DNP	AA	AA	TG			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:118829639_118829640AA>TG	uc003ksj.2	+	11	989_990	c.866_867AA>TG	c.(865-867)CAA>CTG	p.Q289L	HSD17B4_uc011cwg.1_Missense_Mutation_p.Q265L|HSD17B4_uc011cwh.1_Missense_Mutation_p.Q271L|HSD17B4_uc011cwi.1_Missense_Mutation_p.Q314L|HSD17B4_uc003ksk.3_Missense_Mutation_p.Q142L|HSD17B4_uc011cwj.1_Missense_Mutation_p.Q142L|HSD17B4_uc010jcn.1_5'UTR	NM_000414	NP_000405	P51659	DHB4_HUMAN	hydroxysteroid (17-beta) dehydrogenase 4	289	(3R)-hydroxyacyl-CoA dehydrogenase.				bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3-hydroxyacyl-CoA dehydrogenase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity|estradiol 17-beta-dehydrogenase activity|isomerase activity|long-chain-enoyl-CoA hydratase activity|protein binding|sterol binding|sterol transporter activity			ovary(1)|pancreas(1)	2		all_cancers(142;0.0206)|Prostate(80;0.0322)		OV - Ovarian serous cystadenocarcinoma(64;0.000247)|Epithelial(69;0.000849)|all cancers(49;0.0122)	NADH(DB00157)	CAGAGTATCCAAGGTAAAGAGA	0.441000												
LOX	4015	broad.mit.edu	37	5	121413231	121413231	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:121413231T>G	uc003ksu.2	-	1	825	c.450A>C	c.(448-450)GAA>GAC	p.E150D	LOX_uc010jcq.2_5'Flank|LOX_uc011cwk.1_5'Flank|LOX_uc010jcr.2_5'Flank	NM_002317	NP_002308	P28300	LYOX_HUMAN	lysyl oxidase preproprotein	150					protein modification process	extracellular space	copper ion binding|protein-lysine 6-oxidase activity			lung(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)|Ovarian(225;0.0814)|Breast(839;0.143)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;2.14e-11)|OV - Ovarian serous cystadenocarcinoma(64;7.87e-10)|all cancers(49;2.49e-09)|COAD - Colon adenocarcinoma(49;0.02)		GCGCAGGAACTTCTCCCGGCG	0.647000												
SNCAIP	9627	broad.mit.edu	37	5	121786636	121786636	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:121786636A>C	uc003ksw.1	+	10	2300	c.2094A>C	c.(2092-2094)CGA>CGC	p.R698R	SNCAIP_uc011cwl.1_Silent_p.R256R|SNCAIP_uc003ksx.1_Silent_p.R745R|SNCAIP_uc003ksy.1_Silent_p.R332R|SNCAIP_uc003ksz.1_Silent_p.R332R|SNCAIP_uc010jcu.2_Silent_p.R294R|SNCAIP_uc011cwm.1_Silent_p.R332R|SNCAIP_uc003kta.1_Silent_p.R330R|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Silent_p.R392R|SNCAIP_uc010jcx.1_Silent_p.R638R|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Silent_p.R214R	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	698					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		AGGCTGACCGACCAAGGCCGC	0.552000												
ZNF608	57507	broad.mit.edu	37	5	124080350	124080350	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:124080350A>C	uc003ktq.1	-	1	456	c.333T>G	c.(331-333)ACT>ACG	p.T111T	ZNF608_uc003ktr.1_RNA|ZNF608_uc003kts.1_Silent_p.T111T|ZNF608_uc003ktt.1_Silent_p.T111T	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	111						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		CATCCTTAGAAGTTTTACTCC	0.493000												
GRAMD3	65983	broad.mit.edu	37	5	125819177	125819177	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:125819177A>T	uc003ktu.2	+	9	1188	c.758A>T	c.(757-759)GAT>GTT	p.D253V	GRAMD3_uc011cwt.1_Missense_Mutation_p.D268V|GRAMD3_uc011cwv.1_Missense_Mutation_p.D261V|GRAMD3_uc011cww.1_Missense_Mutation_p.D149V|GRAMD3_uc011cwx.1_RNA|GRAMD3_uc011cwy.1_Missense_Mutation_p.D144V|GRAMD3_uc011cwz.1_Missense_Mutation_p.D237V|GRAMD3_uc011cwu.1_Missense_Mutation_p.D237V	NM_023927	NP_076416	Q96HH9	GRAM3_HUMAN	GRAM domain containing 3 isoform 2	253										central_nervous_system(1)	1		Prostate(80;0.0928)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0401)|OV - Ovarian serous cystadenocarcinoma(64;0.0604)|all cancers(49;0.108)		GAATTCTCAGATCTGGATGGA	0.428000												
SLC12A2	6558	broad.mit.edu	37	5	127483312	127483312	+	Splice_Site	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:127483312A>G	uc003kus.2	+	11	1938	c.1774_splice	c.e11-2	p.V592_splice	SLC12A2_uc010jdf.2_Splice_Site|SLC12A2_uc010jdg.2_Splice_Site_p.V592_splice	NM_001046	NP_001037	P55011	S12A2_HUMAN	solute carrier family 12						potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			ovary(3)	3		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	CTTTTATTTAAGGTAATGAGT	0.353000												
ADAMTS19	171019	broad.mit.edu	37	5	128862008	128862008	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:128862008A>C	uc003kvb.1	+	4	927	c.927A>C	c.(925-927)GCA>GCC	p.A309A	ADAMTS19_uc003kvc.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	309					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GAAAAATAGCAGAAAGTGGAA	0.353000												
HSPA4	3308	broad.mit.edu	37	5	132431895	132431895	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:132431895T>G	uc003kyj.2	+	14	2037	c.1756T>G	c.(1756-1758)TTA>GTA	p.L586V		NM_002154	NP_002145	P34932	HSP74_HUMAN	heat shock 70kDa protein 4	586				NQLL -> ESAI (in Ref. 4; AAA02807).	cellular chaperone-mediated protein complex assembly|protein import into mitochondrial outer membrane|response to unfolded protein	cytoplasm|nucleus	ATP binding			lung(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GAATCAGCTATTATGGCAGAT	0.398000												
CDKL3	51265	broad.mit.edu	37	5	133657596	133657596	+	Splice_Site	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:133657596T>C	uc003kzf.3	-	5	659	c.540_splice	c.e5-1	p.K180_splice	CDKL3_uc011cxm.1_Splice_Site|CDKL3_uc011cxn.1_Splice_Site|CDKL3_uc010jdw.2_Splice_Site|CDKL3_uc011cxo.1_Splice_Site|CDKL3_uc011cxp.1_Splice_Site|CDKL3_uc011cxq.1_Splice_Site|CDKL3_uc003kzg.3_Splice_Site_p.K180_splice|CDKL3_uc011cxr.1_Splice_Site_p.K180_splice	NM_001113575	NP_001107047	Q8IVW4	CDKL3_HUMAN	cyclin-dependent kinase-like 3 isoform 1							cytoplasm	ATP binding|cyclin-dependent protein kinase activity			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCCACAGGTCTGAAACAGATC	0.328000												
TXNDC15	79770	broad.mit.edu	37	5	134223395	134223395	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:134223395A>C	uc003lac.1	+	2	772	c.114A>C	c.(112-114)GAA>GAC	p.E38D	TXNDC15_uc010jdy.1_Intron|TXNDC15_uc011cxv.1_RNA	NM_024715	NP_078991	Q96J42	TXD15_HUMAN	disulfide isomerase precursor	38	Extracellular (Potential).				cell redox homeostasis	integral to membrane				ovary(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TTGCAGAGGAAAGTGGTCGCT	0.507000												
TRPC7	57113	broad.mit.edu	37	5	135567231	135567231	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:135567231T>G	uc003lbn.1	-	7	1851	c.1848A>C	c.(1846-1848)GAA>GAC	p.E616D	TRPC7_uc010jef.1_Missense_Mutation_p.E553D|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.E547D|TRPC7_uc010jei.1_Missense_Mutation_p.E492D|TRPC7_uc010jej.1_Missense_Mutation_p.E168D	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	617	Extracellular (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TAAAACTTTCTTCAACCCTGC	0.323000												
FAM13B	51306	broad.mit.edu	37	5	137275969	137275969	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:137275969T>G	uc003lbz.2	-	23	3227	c.2693A>C	c.(2692-2694)AAG>ACG	p.K898T	FAM13B_uc003lcb.2_Missense_Mutation_p.K774T|FAM13B_uc003lca.2_Missense_Mutation_p.K870T|PKD2L2_uc003lbw.1_3'UTR|PKD2L2_uc003lbx.2_3'UTR|PKD2L2_uc003lby.2_Intron|PKD2L2_uc011cyi.1_3'UTR	NM_016603	NP_057687	Q9NYF5	FA13B_HUMAN	hypothetical protein LOC51306 isoform 1	898					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						AAGCCTAAGCTTGGCTTTAAT	0.348000												
PCDHA2	56146	broad.mit.edu	37	5	140175798	140175798	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140175798A>G	uc003lhd.2	+	1	1355	c.1249A>G	c.(1249-1251)AGC>GGC	p.S417G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.S417G|PCDHA2_uc011czy.1_Missense_Mutation_p.S417G	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	417	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCGCGAGAGCGTGTCAGC	0.627000												
PCDHA4	56144	broad.mit.edu	37	5	140188288	140188288	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140188288A>T	uc003lhi.2	+	1	1617	c.1516A>T	c.(1516-1518)AGC>TGC	p.S506C	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.S506C|PCDHA4_uc011daa.1_Missense_Mutation_p.S506C	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	506	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCGCTGTCGAGCTACGTTTC	0.657000												
PCDHA7	56141	broad.mit.edu	37	5	140214018	140214018	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140214018T>G	uc003lhq.2	+	1	50	c.50T>G	c.(49-51)TTT>TGT	p.F17C	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.F17C	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	17					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTACTGCTGTTTATTATAATT	0.512000												
PCDHA12	56137	broad.mit.edu	37	5	140256514	140256514	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140256514A>C	uc003lic.2	+	1	1584	c.1457A>C	c.(1456-1458)AAG>ACG	p.K486T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.K486T	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	486	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACGCGCAGAAGAACGCGCTG	0.667000												
PCDHB1	29930	broad.mit.edu	37	5	140431782	140431782	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140431782T>A	uc003lik.1	+	1	804	c.727T>A	c.(727-729)TCG>ACG	p.S243T		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	243	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCCCAGTTCTCGCGACTGGT	0.602000												
PCDHB1	29930	broad.mit.edu	37	5	140431955	140431955	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140431955A>C	uc003lik.1	+	1	977	c.900A>C	c.(898-900)GAA>GAC	p.E300D		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	300	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAAATGGAGAAGTTCGACTAA	0.463000												
PCDHB9	56127	broad.mit.edu	37	5	140567302	140567302	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140567302A>C	uc003liw.1	+	1	410	c.410A>C	c.(409-411)GAG>GCG	p.E137A		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	137	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGGCACAAAGAGATGGTCTTA	0.403000												
PCDHB12	56124	broad.mit.edu	37	5	140590099	140590099	+	Silent	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140590099T>A	uc003liz.2	+	1	1809	c.1620T>A	c.(1618-1620)GCT>GCA	p.A540A	PCDHB12_uc011dak.1_Silent_p.A203A	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	540	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTCCCCGGCTTTGAGCAGCG	0.692000												
TAF7	6879	broad.mit.edu	37	5	140699524	140699524	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140699524T>G	uc003ljg.2	-	1	828	c.88A>C	c.(88-90)AGG>CGG	p.R30R		NM_005642	NP_005633	Q15545	TAF7_HUMAN	TATA box-binding protein-associated factor 2F	30					negative regulation of histone acetylation|negative regulation of protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|spermine transport|transcription initiation from RNA polymerase II promoter	Golgi apparatus|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	histone acetyltransferase binding|thyroid hormone receptor binding|transcription coactivator activity|transcription regulatory region DNA binding|vitamin D receptor binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTACTGCCCTTCTCACAGTA	0.463000												
PCDHGA3	56112	broad.mit.edu	37	5	140725704	140725704	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140725704T>A	uc003ljm.1	+	1	2104	c.2104T>A	c.(2104-2106)TGC>AGC	p.C702S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.C462S|PCDHGA3_uc011dap.1_Missense_Mutation_p.C702S	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	702	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCGGTCTCCTGCGTCTTCCT	0.682000												
PCDHGB4	8641	broad.mit.edu	37	5	140768320	140768320	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140768320T>G	uc003lkc.1	+	1	869	c.869T>G	c.(868-870)TTT>TGT	p.F290C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.F290C	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	290	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCACCCAATTTGACCTGAAC	0.458000												
PCDHGA8	9708	broad.mit.edu	37	5	140773688	140773688	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140773688T>C	uc003lkd.1	+	1	2206	c.1308T>C	c.(1306-1308)ACT>ACC	p.T436T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Silent_p.T436T	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	436	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCACTGAAACTCAAATCGCTC	0.463000												
PCDHGB5	56101	broad.mit.edu	37	5	140778113	140778113	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140778113T>C	uc003lkf.1	+	1	419	c.419T>C	c.(418-420)CTG>CCG	p.L140P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Missense_Mutation_p.L140P	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	140	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTTTGAGCTGCAAATAAGT	0.413000												
PCDHGB6	56100	broad.mit.edu	37	5	140788397	140788397	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140788397T>G	uc003lkj.1	+	1	628	c.628T>G	c.(628-630)TTG>GTG	p.L210V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Missense_Mutation_p.L210V	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	210	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCTCATAGCTTGATATTGAC	0.448000												
PCDHGB6	56100	broad.mit.edu	37	5	140789877	140789877	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140789877T>A	uc003lkj.1	+	1	2108	c.2108T>A	c.(2107-2109)TTC>TAC	p.F703Y	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Missense_Mutation_p.F703Y|PCDHGA10_uc011day.1_5'Flank|PCDHGA10_uc003lkl.1_5'Flank	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	703	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAGTGCTCTTCCTCCTCGCC	0.582000												
PCDHGA10	56106	broad.mit.edu	37	5	140794709	140794709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140794709C>T	uc003lkl.1	+	1	1967	c.1967C>T	c.(1966-1968)CCC>CTC	p.P656L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.P656L|PCDHGB7_uc003lkm.2_5'Flank|PCDHGB7_uc003lkn.1_5'Flank	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	656	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACGGCCAGCCCCCTCTCTCC	0.682000												
PCDHGA12	26025	broad.mit.edu	37	5	140811196	140811196	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:140811196A>G	uc003lkt.1	+	1	1039	c.870A>G	c.(868-870)CAA>CAG	p.Q290Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Silent_p.Q290Q	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	290	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGCGGCCCAAGTTTTCAAAC	0.498000												
SPRY4	81848	broad.mit.edu	37	5	141694376	141694376	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:141694376T>C	uc003lml.2	-	2	557	c.298A>G	c.(298-300)AGC>GGC	p.S100G	SPRY4_uc010jgi.1_Missense_Mutation_p.S123G	NM_001127496	NP_001120968	Q9C004	SPY4_HUMAN	sprouty homolog 4 isoform 2	100	Poly-Ser.				multicellular organismal development	cytoplasm|ruffle membrane	protein binding			ovary(1)|lung(1)	2		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGCTGCTGCTCACAGAGCTG	0.682000									Testicular_Cancer_Familial_Clustering_of			
RBM27	54439	broad.mit.edu	37	5	145616914	145616914	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:145616914A>C	uc003lnz.3	+	8	1364	c.1198A>C	c.(1198-1200)AGT>CGT	p.S400R	RBM27_uc003lny.2_Missense_Mutation_p.S400R	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	400	Pro-rich.				mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCCTGGGACAAGTGCAGTGCC	0.428000												
RBM27	54439	broad.mit.edu	37	5	145648801	145648801	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:145648801A>C	uc003lnz.3	+	16	2649	c.2483A>C	c.(2482-2484)AAA>ACA	p.K828T	RBM27_uc003lny.2_Missense_Mutation_p.K773T	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	828	Potential.				mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GATATGAGGAAAAAAAGACAG	0.299000												
DPYSL3	1809	broad.mit.edu	37	5	146798174	146798174	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:146798174A>C	uc003lon.1	-	3	259	c.149T>G	c.(148-150)ATT>AGT	p.I50S	DPYSL3_uc003loo.2_Missense_Mutation_p.I164S	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3	50					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCAGGAACAATCAGATTGTC	0.398000												
ARHGEF37	389337	broad.mit.edu	37	5	149003664	149003664	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:149003664A>G	uc003lra.1	+	10	1489	c.1425A>G	c.(1423-1425)CAA>CAG	p.Q475Q		NM_001001669	NP_001001669	A1IGU5	ARH37_HUMAN	hypothetical protein LOC389337	475					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0						GCTCCTTTCAAGAGACCTTTG	0.587000												
GRIA1	2890	broad.mit.edu	37	5	153149895	153149895	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:153149895A>G	uc003lva.3	+	13	2555	c.2190A>G	c.(2188-2190)AAA>AAG	p.K730K	GRIA1_uc003luy.3_Silent_p.K730K|GRIA1_uc003luz.3_Silent_p.K635K|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.K650K|GRIA1_uc011dcx.1_Silent_p.K661K|GRIA1_uc011dcy.1_Silent_p.K740K|GRIA1_uc011dcz.1_Silent_p.K740K	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	730	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AGCAGCGGAAACCCTGTGACA	0.512000												
RARS	5917	broad.mit.edu	37	5	167921609	167921609	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:167921609T>G	uc003lzx.2	+	5	574	c.533T>G	c.(532-534)CTT>CGT	p.L178R	RARS_uc011deo.1_5'UTR	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	178					arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		TTGACCAGTCTTCTAGTGAAT	0.318000												
SLIT3	6586	broad.mit.edu	37	5	168180908	168180908	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:168180908T>C	uc003mab.2	-	17	2210	c.1790A>G	c.(1789-1791)CAC>CGC	p.H597R	SLIT3_uc010jjg.2_Missense_Mutation_p.H597R	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	597	LRR 14.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CACGCGCCCGTGCACGGTCTC	0.617000												
RANBP17	64901	broad.mit.edu	37	5	170669756	170669756	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:170669756T>G	uc003mba.2	+	24	2724	c.2708T>G	c.(2707-2709)ATC>AGC	p.I903S	RANBP17_uc003mbb.2_Missense_Mutation_p.I228S|RANBP17_uc003mbd.2_Missense_Mutation_p.I266S|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	903					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			ATGAGCTTCATCATCAACTTA	0.423000			T	TRD@	ALL							
C5orf41	153222	broad.mit.edu	37	5	172517706	172517706	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:172517706A>C	uc003mch.2	+	4	828	c.524A>C	c.(523-525)AAA>ACA	p.K175T	C5orf41_uc003mcg.2_Missense_Mutation_p.K175T|C5orf41_uc003mcf.2_Missense_Mutation_p.K175T|C5orf41_uc011dfd.1_Missense_Mutation_p.K175T	NM_153607	NP_705835	Q8IUR6	CE041_HUMAN	luman-recruiting factor	175							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(175;0.000159)|Lung NSC(126;0.00223)|all_lung(126;0.00391)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TTCCCTGGTAAAAAGATCACA	0.443000												
C5orf25	375484	broad.mit.edu	37	5	175722138	175722138	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:175722138T>G	uc003mds.3	+	5	1887	c.1480T>G	c.(1480-1482)TTT>GTT	p.F494V	C5orf25_uc003mdt.3_Missense_Mutation_p.F79V|C5orf25_uc003mdr.3_RNA|C5orf25_uc011dfk.1_Missense_Mutation_p.F513V			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	494											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		TTTGATGGACTTTGTGTCACC	0.453000												
CDHR2	54825	broad.mit.edu	37	5	176011249	176011249	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:176011249A>G	uc003mem.1	+	18	2183	c.2117A>G	c.(2116-2118)GAG>GGG	p.E706G	CDHR2_uc003men.1_Missense_Mutation_p.E706G	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	706	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						ACGGTGAAGGAGGAGGATCCA	0.557000												
GPRIN1	114787	broad.mit.edu	37	5	176024901	176024901	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:176024901T>C	uc003meo.1	-	2	2110	c.1935A>G	c.(1933-1935)CAA>CAG	p.Q645Q		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	645						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAGCGCCCTCTTGCCCAGGGA	0.587000												
HUS1B	135458	broad.mit.edu	37	6	656331	656331	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:656331T>G	uc003mtg.2	-	1	634	c.614A>C	c.(613-615)AAA>ACA	p.K205T	EXOC2_uc003mtd.2_Intron|EXOC2_uc003mte.2_Intron|EXOC2_uc011dho.1_Intron	NM_148959	NP_683762	Q8NHY5	HUS1B_HUMAN	HUS1 checkpoint protein B	205											0	Ovarian(93;0.0733)	Breast(5;0.00139)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.041)|BRCA - Breast invasive adenocarcinoma(62;0.0965)		TCCAAGATTTTTAAAATAACT	0.532000												
RIOK1	83732	broad.mit.edu	37	6	7414622	7414622	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:7414622A>C	uc003mxn.2	+	16	1769	c.1595A>C	c.(1594-1596)AAA>ACA	p.K532T	RIOK1_uc003mxo.2_Missense_Mutation_p.K291T	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	532							ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					ATTGATAAAAAAGTAAGCAAT	0.458000												
MAK	4117	broad.mit.edu	37	6	10803970	10803970	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:10803970A>C	uc003mzl.2	-	6	875	c.646T>G	c.(646-648)TTA>GTA	p.L216V	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Missense_Mutation_p.L216V|MAK_uc010jov.1_RNA	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	216	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				GGAGTCCCTAAAACTTGGCAA	0.348000												
ATXN1	6310	broad.mit.edu	37	6	16327457	16327457	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:16327457A>T	uc003nbt.2	-	8	2056	c.1085T>A	c.(1084-1086)GTG>GAG	p.V362E	ATXN1_uc010jpi.2_Missense_Mutation_p.V362E|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	362					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				CGGGTGGACCACCACGTGCCT	0.682000												
KIF13A	63971	broad.mit.edu	37	6	17764753	17764753	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:17764753A>G	uc003ncg.3	-	39	5111	c.5006T>C	c.(5005-5007)CTC>CCC	p.L1669P	KIF13A_uc003ncf.2_Missense_Mutation_p.L1621P|KIF13A_uc003nch.3_Missense_Mutation_p.L1634P|KIF13A_uc003nci.3_Missense_Mutation_p.L1621P|KIF13A_uc003nce.1_Missense_Mutation_p.L220P	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	1669					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			GTTTTCCTTGAGTGGCACCAC	0.473000												
KDM1B	221656	broad.mit.edu	37	6	18213945	18213945	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:18213945T>C	uc003nco.1	+	12	1508	c.1433T>C	c.(1432-1434)TTT>TCT	p.F478S	KDM1B_uc003ncn.1_Missense_Mutation_p.F449S|KDM1B_uc003ncp.1_Missense_Mutation_p.F34S|KDM1B_uc003ncq.1_Missense_Mutation_p.F34S	NM_153042	NP_694587	Q8NB78	KDM1B_HUMAN	amine oxidase (flavin containing) domain 1	681					multicellular organismal development|regulation of DNA methylation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-monomethyl-K4 specific)|oxidoreductase activity|zinc ion binding			skin(1)	1						GCTGACTTTTTTGGTCACGTT	0.463000												
KIAA0319	9856	broad.mit.edu	37	6	24576688	24576688	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:24576688A>C	uc011djo.1	-	10	1879	c.1642T>G	c.(1642-1644)TTG>GTG	p.L548V	KIAA0319_uc011djp.1_Missense_Mutation_p.L503V|KIAA0319_uc003neh.1_Missense_Mutation_p.L548V|KIAA0319_uc011djq.1_Missense_Mutation_p.L539V|KIAA0319_uc011djr.1_Missense_Mutation_p.L548V|KIAA0319_uc010jpt.1_5'UTR	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	548	PKD 3.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						TTTCCATTCAAAGTGATGGAG	0.493000												
KIAA0319	9856	broad.mit.edu	37	6	24581195	24581195	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:24581195T>G	uc011djo.1	-	7	1475	c.1238A>C	c.(1237-1239)AAC>ACC	p.N413T	KIAA0319_uc011djp.1_Missense_Mutation_p.N368T|KIAA0319_uc003neh.1_Missense_Mutation_p.N413T|KIAA0319_uc011djq.1_Missense_Mutation_p.N404T|KIAA0319_uc011djr.1_Missense_Mutation_p.N413T|KIAA0319_uc010jpt.1_5'UTR	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	413	PKD 1.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						TCCAAAGGCGTTTTCACTAGA	0.413000											OREG0017229	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
SLC17A4	10050	broad.mit.edu	37	6	25773785	25773785	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:25773785A>C	uc003nfe.2	+	8	989	c.870A>C	c.(868-870)AAA>AAC	p.K290N	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Missense_Mutation_p.K51N|SLC17A4_uc003nfg.2_Missense_Mutation_p.K227N|SLC17A4_uc010jqa.2_Missense_Mutation_p.K3N	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	290					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						CTATGATCAAATCCTTACCAC	0.463000												
HIST1H1A	3024	broad.mit.edu	37	6	26017925	26017925	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:26017925A>G	uc003nfo.2	-	1	116	c.36T>C	c.(34-36)TCT>TCC	p.S12S	HIST1H3A_uc003nfp.1_5'Flank	NM_005325	NP_005316	Q02539	H11_HUMAN	histone cluster 1, H1a	12					nucleosome assembly|spermatogenesis	nucleosome|nucleus	DNA binding			ovary(2)	2						CAGGAGCAGCAGAAGCGGCGG	0.527000											OREG0017237	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
HIST1H4B	8366	broad.mit.edu	37	6	26027235	26027235	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:26027235G>A	uc003nfr.2	-	1	246	c.246C>T	c.(244-246)GTC>GTT	p.V82V		NM_003544	NP_003535	P62805	H4_HUMAN	histone cluster 1, H4b	82					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(2)	2						CCATGGCAGTGACAGTCTTGC	0.532000											OREG0017238	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
BTN3A1	11119	broad.mit.edu	37	6	26405873	26405873	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:26405873T>C	uc003nhv.2	+	2	450	c.82T>C	c.(82-84)TCA>CCA	p.S28P	BTN3A1_uc011dkj.1_Missense_Mutation_p.S28P|BTN3A1_uc011dkk.1_Missense_Mutation_p.S28P|BTN3A1_uc010jqj.2_Missense_Mutation_p.S28P	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	28					lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CATGCCTCACTCAGGTAGGGA	0.468000												
OR14J1	442191	broad.mit.edu	37	6	29275414	29275414	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:29275414A>G	uc011dln.1	+	1	948	c.948A>G	c.(946-948)AAA>AAG	p.K316K		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	316	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						tgtgcttaaaagccatgttta	0.289000												
MOG	4340	broad.mit.edu	37	6	29627367	29627367	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:29627367A>C	uc003nnf.2	+	2	538	c.360A>C	c.(358-360)TCA>TCC	p.S120S	MOG_uc003qzk.1_Silent_p.S120S|MOG_uc010kle.1_Intron|MOG_uc010klf.1_Intron|MOG_uc003nmy.1_Silent_p.S120S|MOG_uc003nmz.2_Silent_p.S120S|MOG_uc011dlt.1_Silent_p.S50S|MOG_uc003nna.2_Intron|MOG_uc011dlu.1_Intron|MOG_uc011dlv.1_Intron|MOG_uc003nnd.2_Silent_p.S120S|MOG_uc003nne.2_Silent_p.S120S|MOG_uc003nng.2_Silent_p.S120S|MOG_uc003nnh.2_Silent_p.S120S|MOG_uc003nni.2_Silent_p.S120S|MOG_uc003nnj.2_Silent_p.S120S|MOG_uc003nnk.2_Silent_p.S120S	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	120	Ig-like V-type.|Extracellular (Potential).				cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						TAAGGTTCTCAGATGAAGGAG	0.473000												
TRIM39	56658	broad.mit.edu	37	6	30297161	30297161	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:30297161T>G	uc010jrz.2	+	3	379	c.67T>G	c.(67-69)TTA>GTA	p.L23V	HCG18_uc003npx.2_5'Flank|HCG18_uc003npy.2_5'Flank|TRIM39_uc003npz.2_Missense_Mutation_p.L23V|TRIM39_uc003nqb.2_Missense_Mutation_p.L23V|TRIM39_uc003nqc.2_Missense_Mutation_p.L23V|TRIM39_uc010jsa.1_Missense_Mutation_p.L23V	NM_021253	NP_067076	Q9HCM9	TRI39_HUMAN	tripartite motif-containing 39 isoform 1	23					apoptosis	cytosol|mitochondrion	identical protein binding|zinc ion binding			ovary(3)	3						TTTGGAGAACTTACAGGTGGA	0.532000												
TRIM39	56658	broad.mit.edu	37	6	30297387	30297387	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:30297387A>G	uc010jrz.2	+	3	605	c.293A>G	c.(292-294)AAG>AGG	p.K98R	HCG18_uc003npx.2_5'Flank|HCG18_uc003npy.2_5'Flank|TRIM39_uc003npz.2_Missense_Mutation_p.K98R|TRIM39_uc003nqb.2_Missense_Mutation_p.K98R|TRIM39_uc003nqc.2_Missense_Mutation_p.K98R|TRIM39_uc010jsa.1_Missense_Mutation_p.K98R	NM_021253	NP_067076	Q9HCM9	TRI39_HUMAN	tripartite motif-containing 39 isoform 1	98					apoptosis	cytosol|mitochondrion	identical protein binding|zinc ion binding			ovary(3)	3						CAGGCCGTCAAGCGGAAGATC	0.547000												
GTF2H4	2968	broad.mit.edu	37	6	30879519	30879519	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:30879519A>C	uc003nsa.1	+	9	1007	c.800A>C	c.(799-801)GAG>GCG	p.E267A	GTF2H4_uc010jsf.2_Missense_Mutation_p.E267A|GTF2H4_uc011dmv.1_Missense_Mutation_p.E211A|GTF2H4_uc003nsb.1_Missense_Mutation_p.E105A|GTF2H4_uc011dmw.1_Missense_Mutation_p.E273A|VARS2_uc003nsc.1_5'Flank|VARS2_uc003nsd.2_5'Flank|VARS2_uc011dmx.1_5'Flank|VARS2_uc011dmy.1_5'Flank|VARS2_uc011dmz.1_5'Flank	NM_001517	NP_001508	Q92759	TF2H4_HUMAN	general transcription factor IIH, polypeptide 4,	267					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3						CATCTGCGTGAGTTTGGGCTT	0.488000								NER				
HLA-B	3106	broad.mit.edu	37	6	31323279	31323279	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:31323279A>C	uc003nth.2	-	4	764	c.710T>G	c.(709-711)ATC>AGC	p.I237S	HLA-C_uc003ntb.2_RNA|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_RNA|HLA-B_uc011dnk.1_RNA|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Missense_Mutation_p.I116S|HLA-B_uc003nti.1_RNA|HLA-B_uc010jsn.1_RNA	NM_005514	NP_005505	P01889	1B07_HUMAN	major histocompatibility complex, class I, B	237	Alpha-3.|Ig-like C1-type.|Extracellular (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity				0						GGTCAGTGTGATCTCCGCAGG	0.597000									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of			
LTA	4049	broad.mit.edu	37	6	31541078	31541078	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:31541078T>C	uc011dnu.1	+	4	439	c.226T>C	c.(226-228)TCA>CCA	p.S76P	LTA_uc003nue.1_Missense_Mutation_p.S76P|LTA_uc003nuf.2_Intron|LTA_uc003nuh.2_Missense_Mutation_p.S23P|LTA_uc003nug.2_Missense_Mutation_p.S23P|LTA_uc010jsr.2_Intron|TNF_uc003nui.2_5'Flank	NM_001159740	NP_001153212	P01374	TNFB_HUMAN	lymphotoxin alpha precursor	76					cell-cell signaling|induction of apoptosis|signal transduction	extracellular space|membrane	cytokine activity|tumor necrosis factor receptor binding				0					Etanercept(DB00005)	CAAGCAGAACTCACTGCTCTG	0.567000												
MDGA1	266727	broad.mit.edu	37	6	37606368	37606368	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:37606368T>A	uc003onu.1	-	15	3791	c.2612A>T	c.(2611-2613)AAG>ATG	p.K871M	MDGA1_uc003onv.1_Missense_Mutation_p.K140M	NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	871	MAM.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						CACATTGCCCTTATTGCCACT	0.652000												
DNAH8	1769	broad.mit.edu	37	6	38825338	38825338	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:38825338A>C	uc003ooe.1	+	40	5727	c.5127A>C	c.(5125-5127)GAA>GAC	p.E1709D		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ACGATTCAGAAGAGGCTTTAC	0.358000												
MOCS1	4337	broad.mit.edu	37	6	39874134	39874134	+	Nonstop_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:39874134T>G	uc003opb.2	-	10	2048	c.1910A>C	c.(1909-1911)TAG>TCG	p.*637S	MOCS1_uc003opa.2_3'UTR|MOCS1_uc003opc.2_Nonstop_Mutation_p.*621S|MOCS1_uc003opd.2_3'UTR|MOCS1_uc003ope.2_Nonstop_Mutation_p.*534S	NM_005942	NP_005933	Q9NZB8	MOCS1_HUMAN	molybdenum cofactor synthesis-step 1 protein	637					Mo-molybdopterin cofactor biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex|nucleus	4 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|catalytic activity|GTP binding|metal ion binding			ovary(1)|liver(1)|central_nervous_system(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					GGGCAGGTGCTAAGCCCGATG	0.552000												
APOBEC2	10930	broad.mit.edu	37	6	41029181	41029181	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:41029181A>T	uc003opl.2	+	2	393	c.246A>T	c.(244-246)CAA>CAT	p.Q82H	UNC5CL_uc010jxe.1_Intron|APOBEC2_uc010jxf.2_Intron	NM_006789	NP_006780	Q9Y235	ABEC2_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	82					DNA demethylation|mRNA processing		cytidine deaminase activity|RNA binding|zinc ion binding				0	Ovarian(28;0.0418)|Colorectal(47;0.196)					AGGGGGGCCAAGTGCAGGCAT	0.557000												
C6orf130	221443	broad.mit.edu	37	6	41037846	41037846	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:41037846A>G	uc003opm.2	-	4	384	c.212T>C	c.(211-213)CTG>CCG	p.L71P	UNC5CL_uc010jxe.1_5'UTR|C6orf130_uc010jxg.2_Missense_Mutation_p.L71P|C6orf130_uc003opn.2_Missense_Mutation_p.L71P|C6orf130_uc010jxh.1_Missense_Mutation_p.L71P|NFYA_uc003opo.2_5'Flank|NFYA_uc003opp.2_5'Flank	NM_145063	NP_659500	Q9Y530	CF130_HUMAN	hypothetical protein LOC221443	71	Macro.										0	Ovarian(28;0.0418)|Colorectal(47;0.196)					ATCTCTCTTCAGAACAGCCAC	0.313000												
PEX6	5190	broad.mit.edu	37	6	42934394	42934394	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:42934394A>C	uc003otf.2	-	10	2056	c.1963T>G	c.(1963-1965)TTG>GTG	p.L655V	PEX6_uc010jya.2_RNA	NM_000287	NP_000278	Q13608	PEX6_HUMAN	peroxisomal biogenesis factor 6	655					protein import into peroxisome matrix, translocation|protein stabilization	cytosol|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)	1			all cancers(41;0.00235)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0562)			CCACCTGCCAAACTGCAAAGA	0.582000												
SLC22A7	10864	broad.mit.edu	37	6	43267175	43267175	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:43267175T>G	uc003out.2	+	3	546	c.447T>G	c.(445-447)ACT>ACG	p.T149T	SLC22A7_uc010jyl.1_Silent_p.T147T|SLC22A7_uc003ous.2_Silent_p.T147T	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	149	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			CTGCGTCCACTTTCTTCTTCG	0.572000												
AARS2	57505	broad.mit.edu	37	6	44269806	44269806	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:44269806T>G	uc010jza.1	-	19	2592	c.2589A>C	c.(2587-2589)CAA>CAC	p.Q863H	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	863					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	CCTGTCCCATTTGCAGCTTAC	0.602000												
CYP39A1	51302	broad.mit.edu	37	6	46620249	46620249	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:46620249T>C	uc003oyf.1	-	1	275	c.71A>G	c.(70-72)AAG>AGG	p.K24R	CYP39A1_uc011dwa.1_Missense_Mutation_p.K24R|CYP39A1_uc010jzd.1_5'UTR|SLC25A27_uc011dwb.1_5'Flank|SLC25A27_uc003oyg.2_5'Flank|SLC25A27_uc003oyh.2_5'Flank|SLC25A27_uc011dwc.1_5'Flank	NM_016593	NP_057677	Q9NYL5	CP39A_HUMAN	cytochrome P450, family 39, subfamily A,	24					bile acid biosynthetic process|bile acid catabolic process|digestion|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	24-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(1)	1						ACGCAAATTCTTCCGCTGAAG	0.453000												
TDRD6	221400	broad.mit.edu	37	6	46657408	46657408	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:46657408A>G	uc003oyj.2	+	1	1543	c.1543A>G	c.(1543-1545)AAG>GAG	p.K515E	TDRD6_uc010jze.2_Missense_Mutation_p.K509E	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	515					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			CACCTTCAGTAAGCTGATGAG	0.423000												
GPR111	222611	broad.mit.edu	37	6	47649717	47649717	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:47649717A>G	uc010jzj.1	+	6	1423	c.1422A>G	c.(1420-1422)CAA>CAG	p.Q474Q	GPR111_uc010jzk.1_Silent_p.Q406Q|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	474	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						TCTGGAGCCAAGTGACAAAGA	0.453000												
OPN5	221391	broad.mit.edu	37	6	47763080	47763080	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:47763080C>T	uc003ozc.2	+	4	542	c.537C>T	c.(535-537)TTC>TTT	p.F179F	OPN5_uc003ozd.2_Silent_p.F14F	NM_181744	NP_859528	Q6U736	OPN5_HUMAN	opsin 5 isoform 1	179	Extracellular (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1						CTGAGCCCTTCGGAACCTCGT	0.607000												
PKHD1	5314	broad.mit.edu	37	6	51524683	51524683	+	Missense_Mutation	SNP	A	A	C	rs145268428		TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:51524683A>C	uc003pah.1	-	61	10517	c.10241T>G	c.(10240-10242)ATT>AGT	p.I3414S		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3414	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GCTATCAAGAATTAGGACCAC	0.368000												
DST	667	broad.mit.edu	37	6	56328444	56328444	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:56328444A>G	uc003pdf.2	-	94	16477	c.16449T>C	c.(16447-16449)GCT>GCC	p.A5483A	DST_uc003pcz.3_Silent_p.A5305A|DST_uc011dxj.1_Silent_p.A5334A|DST_uc011dxk.1_Silent_p.A5345A|DST_uc003pcy.3_Silent_p.A4979A|DST_uc003pcv.3_Silent_p.A101A|DST_uc003pcw.3_Silent_p.A62A|DST_uc003pcx.3_Silent_p.A62A	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	7415					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			TGTTGGGTGAAGCGCCTCGTG	0.592000												
PHF3	23469	broad.mit.edu	37	6	64422746	64422746	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:64422746T>A	uc003pep.1	+	15	5288	c.5262T>A	c.(5260-5262)TTT>TTA	p.F1754L	PHF3_uc003pen.2_Missense_Mutation_p.F1666L|PHF3_uc011dxs.1_Missense_Mutation_p.F1023L	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	1754					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			TGCACCCATTTCGAAGAGGAT	0.393000												
RIMS1	22999	broad.mit.edu	37	6	73108029	73108029	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:73108029A>C	uc003pga.2	+	32	4774	c.4697A>C	c.(4696-4698)AAG>ACG	p.K1566T	RIMS1_uc011dyb.1_Missense_Mutation_p.K963T|RIMS1_uc003pgc.2_Intron|RIMS1_uc010kaq.2_Missense_Mutation_p.K886T|RIMS1_uc011dyc.1_Missense_Mutation_p.K691T|RIMS1_uc010kar.2_Missense_Mutation_p.K634T|RIMS1_uc011dyd.1_Missense_Mutation_p.K700T|RIMS1_uc003pgf.2_Missense_Mutation_p.K566T|RIMS1_uc003pgg.2_Missense_Mutation_p.K462T|RIMS1_uc003pgi.2_Missense_Mutation_p.K382T|RIMS1_uc003pgh.2_Missense_Mutation_p.K433T|RIMS1_uc003pgd.2_Missense_Mutation_p.K632T|RIMS1_uc003pge.2_Missense_Mutation_p.K606T|RIMS1_uc011dye.1_Missense_Mutation_p.K372T|RIMS1_uc011dyf.1_Missense_Mutation_p.K190T|RIMS1_uc011dyg.1_Missense_Mutation_p.K93T	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1566	C2 2.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				CTCACACAAAAGCCTGGTTCC	0.393000												
KCNQ5	56479	broad.mit.edu	37	6	73904333	73904333	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:73904333T>G	uc003pgk.2	+	14	2342	c.1995T>G	c.(1993-1995)GAT>GAG	p.D665E	KCNQ5_uc011dyh.1_Missense_Mutation_p.D684E|KCNQ5_uc011dyi.1_Missense_Mutation_p.D675E|KCNQ5_uc010kat.2_Missense_Mutation_p.D656E|KCNQ5_uc011dyj.1_Missense_Mutation_p.D555E|KCNQ5_uc011dyk.1_Missense_Mutation_p.D415E	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	665					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		ATAGCAAAGATCTTTCGGGTT	0.493000												
KCNQ5	56479	broad.mit.edu	37	6	73904995	73904995	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:73904995T>C	uc003pgk.2	+	14	3004	c.2657T>C	c.(2656-2658)TTT>TCT	p.F886S	KCNQ5_uc011dyh.1_Missense_Mutation_p.F905S|KCNQ5_uc011dyi.1_Missense_Mutation_p.F896S|KCNQ5_uc010kat.2_Missense_Mutation_p.F877S|KCNQ5_uc011dyj.1_Missense_Mutation_p.F776S|KCNQ5_uc011dyk.1_Missense_Mutation_p.F636S	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	886					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		ACAGACACTTTTGATGCCGCA	0.502000												
TPBG	7162	broad.mit.edu	37	6	83075691	83075691	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:83075691A>C	uc003pjn.3	+	3	1949	c.1013A>C	c.(1012-1014)AAC>ACC	p.N338T	TPBG_uc010kbj.2_Missense_Mutation_p.N338T|TPBG_uc003pjo.2_Missense_Mutation_p.N338T	NM_006670	NP_006661	Q13641	TPBG_HUMAN	trophoblast glycoprotein precursor	338	Extracellular (Potential).|LRRCT.				cell adhesion	integral to plasma membrane				central_nervous_system(1)	1		all_cancers(76;0.000805)|Acute lymphoblastic leukemia(125;3.85e-06)|all_hematologic(105;0.0017)|all_epithelial(107;0.0897)		BRCA - Breast invasive adenocarcinoma(397;0.107)		TTGGAACTCAACAGTGCTGAC	0.512000												
RARS2	57038	broad.mit.edu	37	6	88231202	88231202	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:88231202A>C	uc003pme.2	-	12	1075	c.1015T>G	c.(1015-1017)TTT>GTT	p.F339V	RARS2_uc003pmb.2_Missense_Mutation_p.F164V|RARS2_uc003pmc.2_Missense_Mutation_p.F164V|RARS2_uc003pmd.2_Translation_Start_Site|RARS2_uc003pmf.2_RNA	NM_020320	NP_064716	Q5T160	SYRM_HUMAN	arginyl-tRNA synthetase 2, mitochondrial	339					arginyl-tRNA aminoacylation	mitochondrial matrix	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|central_nervous_system(1)	3		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0456)		ATTGTATCAAAATTATACTTG	0.343000												
MDN1	23195	broad.mit.edu	37	6	90368543	90368543	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:90368543T>A	uc003pnn.1	-	89	14923	c.14807A>T	c.(14806-14808)CAG>CTG	p.Q4936L		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	4936					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CTGTGGACTCTGACTTTCGTT	0.493000												
PRDM13	59336	broad.mit.edu	37	6	100062409	100062409	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:100062409A>C	uc003pqg.1	+	4	2159	c.1898A>C	c.(1897-1899)GAG>GCG	p.E633A		NM_021620	NP_067633	Q9H4Q3	PRD13_HUMAN	PR domain containing 13	633	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(76;1.64e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0128)|Colorectal(196;0.069)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0598)		TACCGCTGCGAGTTCTGCGGC	0.657000												
MICAL1	64780	broad.mit.edu	37	6	109770629	109770629	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:109770629T>C	uc003ptj.2	-	10	1744	c.1490A>G	c.(1489-1491)AAG>AGG	p.K497R	MICAL1_uc003ptk.2_Missense_Mutation_p.K497R|MICAL1_uc010kdr.2_Missense_Mutation_p.K411R|MICAL1_uc011eaq.1_Missense_Mutation_p.K516R	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	497					cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		TGTATCTGTCTTGTCGTTGTT	0.592000												
CDK19	23097	broad.mit.edu	37	6	110988698	110988698	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:110988698A>C	uc003puh.1	-	4	468	c.395T>G	c.(394-396)CTT>CGT	p.L132R	CDK19_uc003pui.1_Missense_Mutation_p.L72R	NM_015076	NP_055891	Q9BWU1	CDK19_HUMAN	cell division cycle 2-like 6 (CDK8-like)	132	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						AATCTGGTAAAGTAAGGATTT	0.313000												
KIAA1919	91749	broad.mit.edu	37	6	111588294	111588294	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:111588294A>G	uc003puv.3	+	4	1951	c.1529A>G	c.(1528-1530)GAA>GGA	p.E510G		NM_153369	NP_699200	Q5TF39	NAGT1_HUMAN	sodium-dependent glucose transporter 1	510	Cytoplasmic (Potential).				carbohydrate transport|sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(3)	3		all_cancers(87;2.35e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.0209)		OV - Ovarian serous cystadenocarcinoma(136;0.055)|all cancers(137;0.0871)|Epithelial(106;0.0884)		CACTTGCCAGAAACCAGGACA	0.438000												
RFPL4B	442247	broad.mit.edu	37	6	112671189	112671189	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:112671189T>C	uc003pvx.1	+	3	591	c.279T>C	c.(277-279)TTT>TTC	p.F93F		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	93	B30.2/SPRY.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		TCCGGCATTTTCGGGAGGATG	0.522000												
HS3ST5	222537	broad.mit.edu	37	6	114379073	114379073	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:114379073T>G	uc003pwg.3	-	2	421	c.389A>C	c.(388-390)GAG>GCG	p.E130A	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Missense_Mutation_p.E130A	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	130	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		ACCATAATTCTCATCATTATC	0.433000												
GPRC6A	222545	broad.mit.edu	37	6	117113360	117113360	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:117113360T>A	uc003pxj.1	-	6	2748	c.2726A>T	c.(2725-2727)GAA>GTA	p.E909V	GPRC6A_uc003pxk.1_Missense_Mutation_p.E734V|GPRC6A_uc003pxl.1_Missense_Mutation_p.E838V	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	909	Cytoplasmic (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TGTGGCATTTTCCCTGCATAT	0.423000												
GPRC6A	222545	broad.mit.edu	37	6	117128056	117128056	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:117128056A>C	uc003pxj.1	-	3	834	c.812T>G	c.(811-813)GTT>GGT	p.V271G	GPRC6A_uc003pxk.1_Splice_Site_p.Q270_splice|GPRC6A_uc003pxl.1_Missense_Mutation_p.V271G	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	271	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		AATGACATTAACCTGGGCTTC	0.348000												
TRMT11	60487	broad.mit.edu	37	6	126333946	126333946	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:126333946A>C	uc003qam.2	+	10	1076	c.955A>C	c.(955-957)AGA>CGA	p.R319R	TRMT11_uc003qan.2_RNA|TRMT11_uc010kev.2_Silent_p.R319R	NM_001031712	NP_001026882	Q7Z4G4	TRM11_HUMAN	tRNA methyltransferase 11	319					tRNA processing		methyltransferase activity|nucleic acid binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0356)		ATCTACAAGAAGAACAGGTTC	0.383000												
ENPP3	5169	broad.mit.edu	37	6	132014759	132014759	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:132014759T>C	uc003qcu.3	+	16	1754	c.1407T>C	c.(1405-1407)GCT>GCC	p.A469A	ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Silent_p.A469A	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	469	Extracellular (Potential).|Phosphodiesterase.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		AGTGGCTGGCTGTTAGGTTCG	0.398000												
ALDH8A1	64577	broad.mit.edu	37	6	135239997	135239997	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:135239997A>C	uc003qew.2	-	7	1073	c.1020T>G	c.(1018-1020)AGT>AGG	p.S340R	ALDH8A1_uc003qex.2_Missense_Mutation_p.S286R|ALDH8A1_uc010kgh.2_Missense_Mutation_p.S118R|ALDH8A1_uc011ecx.1_Missense_Mutation_p.S290R	NM_022568	NP_072090	Q9H2A2	AL8A1_HUMAN	aldehyde dehydrogenase 8A1 isoform 1	340					retinal metabolic process	cytoplasm	retinal dehydrogenase activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00401)|GBM - Glioblastoma multiforme(68;0.0058)		TCTTGACGTAACTTCTGACCT	0.458000												
GRM1	2911	broad.mit.edu	37	6	146351241	146351241	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:146351241T>G	uc010khw.1	+	2	1058	c.588T>G	c.(586-588)ACT>ACG	p.T196T	GRM1_uc010khu.1_Silent_p.T196T|GRM1_uc010khv.1_Silent_p.T196T|GRM1_uc003qll.2_Silent_p.T196T|GRM1_uc011edz.1_Silent_p.T196T|GRM1_uc011eea.1_Silent_p.T196T	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	196	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GTGACAAAACTTTGTACAAAT	0.493000												
GRM1	2911	broad.mit.edu	37	6	146755850	146755850	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:146755850A>C	uc010khw.1	+	9	3973	c.3503A>C	c.(3502-3504)GAG>GCG	p.E1168A	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1168	Ser-rich.|Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CCCGTGTCCGAGTCGGTGCTC	0.632000												
TAB2	23118	broad.mit.edu	37	6	149699164	149699164	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:149699164A>T	uc003qmj.2	+	3	291	c.113A>T	c.(112-114)AAC>ATC	p.N38I	TAB2_uc011eec.1_Missense_Mutation_p.N6I|TAB2_uc010kia.1_Missense_Mutation_p.N38I|TAB2_uc010kib.1_Missense_Mutation_p.N38I|TAB2_uc003qmk.3_RNA	NM_015093	NP_055908	Q9NYJ8	TAB2_HUMAN	mitogen-activated protein kinase kinase kinase 7	38	CUE.				activation of MAPK activity|heart development|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	K63-linked polyubiquitin binding|zinc ion binding				0						AATAATAATAACCTGGATGCC	0.338000												
RAET1E	135250	broad.mit.edu	37	6	150209679	150209679	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:150209679T>G	uc003qnl.1	-	4	807	c.747A>C	c.(745-747)CAA>CAC	p.Q249H	uc003qni.1_Intron|RAET1E_uc003qnj.2_Intron|RAET1E_uc003qnk.1_Missense_Mutation_p.Q213H|RAET1E_uc010kih.1_RNA	NM_139165	NP_631904	Q8TD07	N2DL4_HUMAN	retinoic acid early transcript 1E precursor	249	Cytoplasmic (Potential).				antigen processing and presentation|immune response|regulation of immune response	integral to membrane|MHC class I protein complex	protein binding				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.58e-12)		ACTCACCATTTTGCCACCAGA	0.507000												
PLEKHG1	57480	broad.mit.edu	37	6	151152705	151152705	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:151152705T>G	uc003qny.1	+	16	2770	c.2458T>G	c.(2458-2460)TTG>GTG	p.L820V	PLEKHG1_uc011eel.1_Missense_Mutation_p.L860V|PLEKHG1_uc011eem.1_Missense_Mutation_p.L879V|PLEKHG1_uc003qnz.2_Missense_Mutation_p.L820V	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	820					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		CAGTGGTAACTTGTCTATGCC	0.458000												
SERAC1	84947	broad.mit.edu	37	6	158537312	158537312	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:158537312T>C	uc003qrc.2	-	14	1548	c.1406A>G	c.(1405-1407)AAG>AGG	p.K469R	SERAC1_uc003qrb.2_Missense_Mutation_p.K197R	NM_032861	NP_116250	Q96JX3	SRAC1_HUMAN	serine active site containing 1	469					GPI anchor metabolic process|intracellular protein transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	binding|hydrolase activity, acting on ester bonds				0		Breast(66;0.00519)|Ovarian(120;0.123)|Prostate(117;0.178)		OV - Ovarian serous cystadenocarcinoma(65;1.37e-18)|BRCA - Breast invasive adenocarcinoma(81;3.19e-05)		TGCAATGGACTTTCTGAACAA	0.433000												
FNDC1	84624	broad.mit.edu	37	6	159653494	159653494	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:159653494T>G	uc010kjv.2	+	11	2150	c.1950T>G	c.(1948-1950)GAT>GAG	p.D650E	FNDC1_uc010kjw.1_Missense_Mutation_p.D535E	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	650						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CAGACGAAGATGAGCGCGCTG	0.687000												
LPA	4018	broad.mit.edu	37	6	160953592	160953592	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:160953592G>A	uc003qtl.2	-	39	6052	c.5932C>T	c.(5932-5934)CAT>TAT	p.H1978Y		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4486	Peptidase S1.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	CTGGCCAAATGCTCAGCACAA	0.458000												
LPA	4018	broad.mit.edu	37	6	161022106	161022106	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:161022106T>C	uc003qtl.2	-	20	3090	c.2970A>G	c.(2968-2970)CGA>CGG	p.R990R		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3498	Kringle 31.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GATCTGGATTTCGGCAGTAGT	0.448000												
UNC93A	54346	broad.mit.edu	37	6	167717594	167717594	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:167717594A>C	uc003qvq.2	+	5	988	c.813A>C	c.(811-813)CAA>CAC	p.Q271H	UNC93A_uc003qvr.2_Missense_Mutation_p.Q229H	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	271	Helical; (Potential).					integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		GATTGCAGCAAGGATTCCTCT	0.358000												
FOXK1	221937	broad.mit.edu	37	7	4800889	4800889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:4800889C>T	uc003snc.1	+	8	1901	c.1891C>T	c.(1891-1893)CCC>TCC	p.P631S	FOXK1_uc003sna.1_Missense_Mutation_p.P468S	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1	631					cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		GCATGCGGTTCCCACGAACAG	0.637000												
WIPI2	26100	broad.mit.edu	37	7	5254322	5254322	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:5254322A>C	uc003snv.2	+	4	584	c.368A>C	c.(367-369)AAG>ACG	p.K123T	WIPI2_uc003snw.2_Missense_Mutation_p.K123T|WIPI2_uc003snx.2_Missense_Mutation_p.K105T|WIPI2_uc003sny.2_Missense_Mutation_p.K105T|WIPI2_uc010ksv.2_5'UTR|WIPI2_uc003snz.2_Missense_Mutation_p.K64T|WIPI2_uc003soa.2_Missense_Mutation_p.K64T	NM_015610	NP_056425	Q9Y4P8	WIPI2_HUMAN	WD repeat domain, phosphoinositide interacting 2	123					autophagic vacuole assembly	cytosol|PAS complex|pre-autophagosomal structure membrane	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding			ovary(2)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0925)|OV - Ovarian serous cystadenocarcinoma(56;2.59e-14)		CTGGCTGTGAAGCTCAACAGG	0.567000												
PMS2	5395	broad.mit.edu	37	7	6026899	6026899	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:6026899A>C	uc003spl.2	-	11	1584	c.1497T>G	c.(1495-1497)ACT>ACG	p.T499T	PMS2_uc003spj.2_Silent_p.T393T|PMS2_uc003spk.2_Silent_p.T364T|PMS2_uc011jwl.1_Silent_p.T364T|PMS2_uc010ktg.2_Silent_p.T188T|PMS2_uc010kte.2_Intron|PMS2_uc010ktf.1_Silent_p.T499T	NM_000535	NP_000526	P54278	PMS2_HUMAN	PMS2 postmeiotic segregation increased 2 isoform	499					mismatch repair|reciprocal meiotic recombination|somatic hypermutation of immunoglobulin genes	MutLalpha complex	ATP binding|ATPase activity|endonuclease activity|protein binding|single base insertion or deletion binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;4.39e-15)		AATCCACGGAAGTGCTGCCGT	0.632000			Mis|N|F			colorectal|endometrial|ovarian|medulloblastoma|glioma		Direct_reversal_of_damage|MMR	Lynch_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome			
USP42	84132	broad.mit.edu	37	7	6193751	6193751	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:6193751A>G	uc011jwo.1	+	15	2689	c.2566A>G	c.(2566-2568)AGT>GGT	p.S856G	USP42_uc011jwp.1_Missense_Mutation_p.S856G|USP42_uc011jwq.1_Missense_Mutation_p.S663G|USP42_uc011jwr.1_Missense_Mutation_p.S701G	NM_032172	NP_115548	Q9H9J4	UBP42_HUMAN	ubiquitin specific peptidase 42	856	Pro-rich.				cell differentiation|protein deubiquitination|spermatogenesis|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(2)|ovary(1)|pancreas(1)|breast(1)	5		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.108)|OV - Ovarian serous cystadenocarcinoma(56;5.77e-14)		GGAAGGGTTGAGTCCGGCTCC	0.701000												
FAM126A	84668	broad.mit.edu	37	7	22999995	22999995	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:22999995T>G	uc003svm.3	-	10	1126	c.871A>C	c.(871-873)ATG>CTG	p.M291L	FAM126A_uc003svn.3_Missense_Mutation_p.M147L	NM_032581	NP_115970	Q9BYI3	HYCCI_HUMAN	family with sequence similarity 126, member A	291						cytoplasm|membrane	signal transducer activity			central_nervous_system(1)	1						TTAGATTTCATGGGACCATGA	0.363000												
HOXA9	3205	broad.mit.edu	37	7	27204678	27204678	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:27204678T>G	uc003syt.2	-	1	472	c.399A>C	c.(397-399)AAA>AAC	p.K133N		NM_152739	NP_689952	P31269	HXA9_HUMAN	homeobox A9	133							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2						GCGGTTCAGGTTTAATGCCAT	0.627000			T	NUP98|MSI2	AML*							
TAX1BP1	8887	broad.mit.edu	37	7	27832746	27832746	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:27832746T>G	uc003szl.2	+	10	1483	c.1325T>G	c.(1324-1326)CTT>CGT	p.L442R	TAX1BP1_uc011jzo.1_Missense_Mutation_p.L442R|TAX1BP1_uc003szk.2_Missense_Mutation_p.L442R|TAX1BP1_uc011jzp.1_Missense_Mutation_p.L285R	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	442	Potential.				anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			AAACTCCGTCTTCAGATGGCT	0.323000												
C7orf16	10842	broad.mit.edu	37	7	31735091	31735091	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:31735091T>G	uc003tcl.2	+	3	249	c.91T>G	c.(91-93)TCA>GCA	p.S31A	C7orf16_uc011kaf.1_Intron	NM_006658	NP_006649	O96001	GSUB_HUMAN	G-substrate isoform 1	31					behavior|central nervous system development|intracellular protein kinase cascade|protein phosphorylation	soluble fraction				ovary(2)|central_nervous_system(1)	3			GBM - Glioblastoma multiforme(11;0.216)			AGATGATCTTTCAGACCAGTT	0.363000												
ANLN	54443	broad.mit.edu	37	7	36463463	36463463	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:36463463A>G	uc003tff.2	+	15	2718	c.2514A>G	c.(2512-2514)GCA>GCG	p.A838A	ANLN_uc011kaz.1_Silent_p.A750A|ANLN_uc003tfg.2_Silent_p.A801A|ANLN_uc010kxe.2_Silent_p.A800A	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	838	Localization to the cleavage furrow.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						TACTAAAAGCAGGAGCTGAAA	0.333000												
GLI3	2737	broad.mit.edu	37	7	42005617	42005617	+	Silent	SNP	C	C	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:42005617C>A	uc011kbh.1	-	15	3145	c.3054G>T	c.(3052-3054)CTG>CTT	p.L1018L	GLI3_uc011kbg.1_Silent_p.L959L	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1018					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GCACACGAGGCAGGGCCAGGC	0.726000									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome			
GLI3	2737	broad.mit.edu	37	7	42005620	42005620	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:42005620G>A	uc011kbh.1	-	15	3142	c.3051C>T	c.(3049-3051)GCC>GCT	p.A1017A	GLI3_uc011kbg.1_Silent_p.A958A	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1017					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						CACGAGGCAGGGCCAGGCCCT	0.726000									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome			
MRPL32	64983	broad.mit.edu	37	7	42977040	42977040	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:42977040A>T	uc003tia.2	+	3	479	c.432A>T	c.(430-432)CAA>CAT	p.Q144H	MRPL32_uc003tib.2_RNA|MRPL32_uc003tic.2_Missense_Mutation_p.Q91H	NM_031903	NP_114109	Q9BYC8	RM32_HUMAN	mitochondrial ribosomal protein L32 precursor	144					translation	large ribosomal subunit|mitochondrial ribosome	structural constituent of ribosome				0						TAGGGAAGCAAGAAGGGGGCC	0.498000												
UBE2D4	51619	broad.mit.edu	37	7	43978042	43978042	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:43978042T>C	uc003tja.1	+	2	122	c.37T>C	c.(37-39)TTG>CTG	p.L13L	UBE2D4_uc003tjb.1_5'UTR	NM_015983	NP_057067	Q9Y2X8	UB2D4_HUMAN	ubiquitin-conjugating enzyme E2D 4 (putative)	13					protein K11-linked ubiquitination|protein K27-linked ubiquitination|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|protein K63-linked ubiquitination		ATP binding|protein binding|ubiquitin-protein ligase activity				0						ATTAACCGACTTGCAGAGGGA	0.488000												
POLD2	5425	broad.mit.edu	37	7	44156474	44156474	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:44156474A>C	uc010kxz.2	-	7	1372	c.722T>G	c.(721-723)GTT>GGT	p.V241G	POLD2_uc003tke.3_Missense_Mutation_p.V241G|POLD2_uc010kya.2_Missense_Mutation_p.V241G|POLD2_uc003tkf.3_Missense_Mutation_p.V241G	NM_006230	NP_006221	P49005	DPOD2_HUMAN	DNA-directed DNA polymerase delta 2	241					base-excision repair|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	DNA binding|DNA-directed DNA polymerase activity|protein binding			ovary(2)	2						AGCGAGGATAACCCGGGAGAC	0.652000												
CAMK2B	816	broad.mit.edu	37	7	44260282	44260282	+	Silent	SNP	C	C	T	rs71743307		TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:44260282C>T	uc003tkq.2	-	22	1911	c.1701G>A	c.(1699-1701)TCG>TCA	p.S567S	CAMK2B_uc003tkp.2_Silent_p.S443S|CAMK2B_uc003tkx.2_Silent_p.S403S|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Silent_p.S419S|CAMK2B_uc003tks.2_Silent_p.S418S|CAMK2B_uc003tku.2_Silent_p.S404S|CAMK2B_uc003tkv.2_Silent_p.S380S|CAMK2B_uc003tkt.2_Intron|CAMK2B_uc003tkw.2_Silent_p.S350S|CAMK2B_uc010kyc.2_Silent_p.S443S|CAMK2B_uc003tkn.2_Silent_p.S200S	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	567					interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						CAGGCTCAAACGAGGTCAGCC	0.617000												
HUS1	3364	broad.mit.edu	37	7	48007476	48007476	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:48007476T>G	uc003tod.1	-	7	817	c.687A>C	c.(685-687)GAA>GAC	p.E229D	HUS1_uc003toe.1_Missense_Mutation_p.E229D|HUS1_uc011kce.1_RNA	NM_004507	NP_004498	O60921	HUS1_HUMAN	HUS1 checkpoint protein	229					DNA damage checkpoint|DNA replication	Golgi apparatus|nucleolus|nucleoplasm	protein binding			ovary(2)|lung(2)|kidney(1)	5		Breast(660;0.00139)				CTATGTGCACTTCAGCCATGT	0.418000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes				
SUN3	256979	broad.mit.edu	37	7	48056918	48056918	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:48056918T>C	uc003tof.2	-	4	326	c.229A>G	c.(229-231)AAA>GAA	p.K77E	SUN3_uc003tog.2_Missense_Mutation_p.K77E|SUN3_uc011kcf.1_Missense_Mutation_p.K65E	NM_152782	NP_689995	Q8TAQ9	SUN3_HUMAN	Sad1 and UNC84 domain containing 1	77						integral to membrane				central_nervous_system(1)	1						TGTCTGGATTTCTGAGGAACA	0.289000												
ABCA13	154664	broad.mit.edu	37	7	48318068	48318068	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:48318068T>G	uc003toq.2	+	18	7302	c.7277T>G	c.(7276-7278)CTT>CGT	p.L2426R	ABCA13_uc010kys.1_5'Flank	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2426					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						ATGGCAAGACTTCTGGATACA	0.378000												
ABCA13	154664	broad.mit.edu	37	7	48319207	48319207	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:48319207A>C	uc003toq.2	+	18	8441	c.8416A>C	c.(8416-8418)AAT>CAT	p.N2806H	ABCA13_uc010kys.1_5'Flank	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2806					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTTGAGTCAGAATATAACTCA	0.333000												
ZPBP	11055	broad.mit.edu	37	7	50057857	50057857	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:50057857T>G	uc003tou.2	-	6	832	c.762A>C	c.(760-762)GAA>GAC	p.E254D	ZPBP_uc011kci.1_Missense_Mutation_p.E180D|ZPBP_uc010kyw.2_Missense_Mutation_p.E253D	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	254					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					TTTTGTAAGGTTCACAGTTAT	0.333000												
STAG3L4	64940	broad.mit.edu	37	7	66773968	66773968	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:66773968A>C	uc003tvt.3	+	3	401	c.134A>C	c.(133-135)AAG>ACG	p.K45T	STAG3L4_uc010laj.2_RNA	NM_022906	NP_075057	Q8TBR4	STG34_HUMAN	stromal antigen 3-like 4	45											0		Lung NSC(55;0.0839)|all_lung(88;0.181)				TCCTGGAAGAAGTTCCAGGGC	0.498000												
PCLO	27445	broad.mit.edu	37	7	82785475	82785475	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:82785475T>G	uc003uhx.2	-	2	771	c.482A>C	c.(481-483)AAC>ACC	p.N161T	PCLO_uc003uhv.2_Missense_Mutation_p.N161T	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	161					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACTTAAAGCGTTAACCTCTGA	0.398000												
CROT	54677	broad.mit.edu	37	7	87022280	87022280	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:87022280T>G	uc003uit.2	+	17	1860	c.1615T>G	c.(1615-1617)TTT>GTT	p.F539V	CROT_uc003uiu.2_Missense_Mutation_p.F567V	NM_021151	NP_066974	Q9UKG9	OCTC_HUMAN	peroxisomal carnitine O-octanoyltransferase	539					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|transport	peroxisomal matrix	carnitine O-octanoyltransferase activity			ovary(2)|lung(1)	3	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)				L-Carnitine(DB00583)	AGGTGGAAATTTTGTTCTCTC	0.383000												
ABCB4	5244	broad.mit.edu	37	7	87072685	87072685	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:87072685T>C	uc003uiv.1	-	12	1382	c.1306A>G	c.(1306-1308)AGC>GGC	p.S436G	ABCB4_uc003uiw.1_Missense_Mutation_p.S436G|ABCB4_uc003uix.1_Missense_Mutation_p.S436G	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	436	ABC transporter 1.|Cytoplasmic (By similarity).|ATP 1 (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					ACCGTTGTGCTCTTCCCACAG	0.507000												
ZNF804B	219578	broad.mit.edu	37	7	88962900	88962900	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:88962900C>A	uc011khi.1	+	4	1142	c.604C>A	c.(604-606)CAG>AAG	p.Q202K		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	202						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GTTTGGAAATCAGGTACTGCA	0.388000										HNSCC(36;0.09)		
CYP51A1	1595	broad.mit.edu	37	7	91753068	91753068	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:91753068A>C	uc003ulm.3	-	6	1032	c.870T>G	c.(868-870)ACT>ACG	p.T290T	CYP51A1_uc011khn.1_Silent_p.T185T|CYP51A1_uc003uln.3_Silent_p.T227T	NM_000786	NP_000777	Q16850	CP51A_HUMAN	cytochrome P450, family 51, subfamily A,	284					cholesterol biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|sterol 14-demethylase activity				0	all_cancers(62;2.16e-09)|all_epithelial(64;3.86e-08)|Breast(17;0.00206)|all_lung(186;0.169)|all_hematologic(106;0.215)|Lung NSC(181;0.227)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)		Fluconazole(DB00196)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Miconazole(DB01110)|Terconazole(DB00251)	CATCTAGTAAAGTTTGGAGAA	0.353000												
SAMD9	54809	broad.mit.edu	37	7	92733452	92733452	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:92733452T>C	uc003umf.2	-	3	2215	c.1959A>G	c.(1957-1959)GAA>GAG	p.E653E	SAMD9_uc003umg.2_Silent_p.E653E	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	653						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			CACAGATAATTTCCAGAGCAG	0.363000												
TAC1	6863	broad.mit.edu	37	7	97362037	97362037	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:97362037A>C	uc003uop.3	+	2	359	c.113A>C	c.(112-114)GAC>GCC	p.D38A	TAC1_uc003uoq.3_Missense_Mutation_p.D38A|TAC1_uc003uor.3_Missense_Mutation_p.D38A|TAC1_uc003uos.3_Missense_Mutation_p.D38A	NM_003182	NP_003173	P20366	TKN1_HUMAN	tachykinin 1 isoform beta precursor	38					detection of abiotic stimulus|elevation of cytosolic calcium ion concentration|insemination|neuropeptide signaling pathway|synaptic transmission|tachykinin receptor signaling pathway	extracellular space					0	all_cancers(62;3.95e-09)|all_epithelial(64;1.1e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0358)|all_lung(186;0.0384)				Bacitracin(DB00626)	TACGACAGCGACCAGATCAAG	0.557000												
TAC1	6863	broad.mit.edu	37	7	97363046	97363046	+	Silent	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:97363046G>A	uc003uop.3	+	3	381	c.135G>A	c.(133-135)CCG>CCA	p.P45P	TAC1_uc003uoq.3_Silent_p.P45P|TAC1_uc003uor.3_Silent_p.P45P|TAC1_uc003uos.3_Silent_p.P45P	NM_003182	NP_003173	P20366	TKN1_HUMAN	tachykinin 1 isoform beta precursor	45					detection of abiotic stimulus|elevation of cytosolic calcium ion concentration|insemination|neuropeptide signaling pathway|synaptic transmission|tachykinin receptor signaling pathway	extracellular space					0	all_cancers(62;3.95e-09)|all_epithelial(64;1.1e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0358)|all_lung(186;0.0384)				Bacitracin(DB00626)	AGGAACTGCCGGAGCCCTTTG	0.597000												
LMTK2	22853	broad.mit.edu	37	7	97820058	97820058	+	Silent	SNP	T	T	G	rs150799700		TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:97820058T>G	uc003upd.1	+	10	1310	c.1017T>G	c.(1015-1017)CTT>CTG	p.L339L		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	339	Protein kinase.				early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					GTGTGACACTTTGGGAGCTTT	0.418000												
LMTK2	22853	broad.mit.edu	37	7	97821396	97821396	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:97821396T>G	uc003upd.1	+	11	1912	c.1619T>G	c.(1618-1620)TTT>TGT	p.F540C		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	540					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					GTTCCTGTTTTTGATGCCCAC	0.493000												
LMTK2	22853	broad.mit.edu	37	7	97821440	97821440	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:97821440T>G	uc003upd.1	+	11	1956	c.1663T>G	c.(1663-1665)TTA>GTA	p.L555V		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	555					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					TTATATCCAGTTAGAAGAAAA	0.502000												
C7orf51	222950	broad.mit.edu	37	7	100084688	100084688	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:100084688C>T	uc003uvd.1	+	3	472	c.313C>T	c.(313-315)CTC>TTC	p.L105F	C7orf51_uc003uve.1_5'Flank	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	105										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CAGTGGGGGCCTCACAGAGGA	0.721000												
FBXO24	26261	broad.mit.edu	37	7	100190480	100190480	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:100190480A>C	uc003uvm.1	+	5	926	c.633A>C	c.(631-633)GAA>GAC	p.E211D	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Missense_Mutation_p.E197D|FBXO24_uc003uvn.1_5'UTR|uc011kjy.1_RNA|FBXO24_uc011kjz.1_Missense_Mutation_p.E249D|FBXO24_uc011kka.1_Missense_Mutation_p.E199D	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	211						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					AGCCGCAGGAAGTGGTGGGTA	0.562000												
MUC17	140453	broad.mit.edu	37	7	100680229	100680229	+	Silent	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:100680229A>T	uc003uxp.1	+	3	5585	c.5532A>T	c.(5530-5532)GCA>GCT	p.A1844A	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1844	Extracellular (Potential).|Ser-rich.|29.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTTCTACAGCAGTCAGTTCAT	0.502000												
MUC17	140453	broad.mit.edu	37	7	100680882	100680882	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:100680882A>C	uc003uxp.1	+	3	6238	c.6185A>C	c.(6184-6186)AAC>ACC	p.N2062T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2062	Extracellular (Potential).|32.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TCTGAGGGTAACACCCTTTCA	0.493000												
MOGAT3	346606	broad.mit.edu	37	7	100841487	100841487	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:100841487A>C	uc003uyc.2	-	5	820	c.653T>G	c.(652-654)CTG>CGG	p.L218R	MOGAT3_uc010lhr.2_Missense_Mutation_p.L218R	NM_178176	NP_835470	Q86VF5	MOGT3_HUMAN	monoacylglycerol O-acyltransferase 3	218					glycerol metabolic process|lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity|diacylglycerol O-acyltransferase activity			ovary(2)	2	Lung NSC(181;0.168)|all_lung(186;0.215)					CCTCAGCGCCAGGCGCACGAA	0.637000												
LRWD1	222229	broad.mit.edu	37	7	102109080	102109080	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:102109080C>T	uc003uzn.2	+	8	1137	c.999C>T	c.(997-999)CAC>CAT	p.H333H	LRWD1_uc003uzo.2_Silent_p.H181H	NM_152892	NP_690852	Q9UFC0	LRWD1_HUMAN	leucine-rich repeats and WD repeat domain	333					chromatin modification|DNA-dependent DNA replication initiation|establishment of protein localization to chromatin|G1 phase of mitotic cell cycle	centromeric heterochromatin|nuclear origin of replication recognition complex|telomeric heterochromatin	chromatin binding|methyl-CpG binding|methylated histone residue binding			skin(1)	1						TCGTGCTCCACAAGTACAAGG	0.637000												
FBXL13	222235	broad.mit.edu	37	7	102608482	102608482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:102608482G>A	uc003vaq.2	-	7	1005	c.578C>T	c.(577-579)TCA>TTA	p.S193L	FBXL13_uc010liq.1_Missense_Mutation_p.S8L|FBXL13_uc010lir.1_Missense_Mutation_p.S193L|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.S193L|FBXL13_uc003vav.2_RNA	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	193	F-box.										0						ATTCCACAGTGAGTTTAGTTG	0.373000												
RELN	5649	broad.mit.edu	37	7	103185604	103185604	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:103185604T>C	uc003vca.2	-	42	6650	c.6490A>G	c.(6490-6492)AAA>GAA	p.K2164E	RELN_uc010liz.2_Missense_Mutation_p.K2164E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2164					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TCAGGATTTTTGGTGCTTATT	0.373000												
COG5	10466	broad.mit.edu	37	7	107198467	107198467	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:107198467T>G	uc003ved.2	-	2	806	c.281A>C	c.(280-282)AAA>ACA	p.K94T	COG5_uc003vec.2_Missense_Mutation_p.K94T|COG5_uc003vee.2_Missense_Mutation_p.K94T	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	94					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						TTGGGCAAGTTTTGCTAGTTG	0.363000												
LAMB1	3912	broad.mit.edu	37	7	107564421	107564421	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:107564421A>C	uc003vew.2	-	34	5671	c.5336T>G	c.(5335-5337)GTT>GGT	p.V1779G	LAMB1_uc003vev.2_Missense_Mutation_p.V1803G|LAMB1_uc003veu.2_Missense_Mutation_p.V262G	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	1779	Potential.|Domain I.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATACACAGCAACTTTCTGGCT	0.353000												
LAMB4	22798	broad.mit.edu	37	7	107720140	107720140	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:107720140A>G	uc010ljo.1	-	15	1877	c.1793T>C	c.(1792-1794)TTT>TCT	p.F598S	LAMB4_uc003vey.2_Missense_Mutation_p.F598S	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	598	Laminin IV type B.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						AACCCTGGCAAATCCAGGTCC	0.517000												
DOCK4	9732	broad.mit.edu	37	7	111509658	111509658	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:111509658C>T	uc003vfx.2	-	21	2350	c.2081G>A	c.(2080-2082)CGG>CAG	p.R694Q	DOCK4_uc003vfw.2_Missense_Mutation_p.R135Q|DOCK4_uc003vfy.2_Missense_Mutation_p.R694Q|DOCK4_uc003vga.1_Missense_Mutation_p.R299Q	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	694					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				ATGCTCTTGCCGCTCTGCTTC	0.423000												
TFEC	22797	broad.mit.edu	37	7	115581990	115581990	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:115581990T>G	uc003vhj.1	-	7	804	c.620A>C	c.(619-621)AAG>ACG	p.K207T	TFEC_uc003vhk.1_Missense_Mutation_p.K178T|TFEC_uc003vhl.3_Missense_Mutation_p.K178T|TFEC_uc011kmw.1_Missense_Mutation_p.K297T	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	207						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			CTCTAATTTCTTCTGTCTGTG	0.428000												
CFTR	1080	broad.mit.edu	37	7	117235071	117235071	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:117235071A>C	uc003vjd.2	+	15	2710	c.2578A>C	c.(2578-2580)ATT>CTT	p.I860L	CFTR_uc011knq.1_Missense_Mutation_p.I266L	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	860	Helical; Name=7; (Potential).|ABC transmembrane type-1 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	CAAGAGCTTAATTTTTGTGCT	0.333000									Cystic_Fibrosis			
CTTNBP2	83992	broad.mit.edu	37	7	117431987	117431987	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:117431987T>C	uc003vjf.2	-	4	1355	c.1263A>G	c.(1261-1263)CAA>CAG	p.Q421Q		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	421	Pro-rich.									ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		TAGGTGGAGCTTGCGAGTTCT	0.527000												
C7orf58	79974	broad.mit.edu	37	7	120704342	120704342	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:120704342A>T	uc003vjq.3	+	5	1038	c.591A>T	c.(589-591)TTA>TTT	p.L197F	C7orf58_uc003vjr.1_Missense_Mutation_p.L197F|C7orf58_uc003vjs.3_Missense_Mutation_p.L197F|C7orf58_uc003vjt.3_5'UTR	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	197						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					AGGAAGGATTATGTCAAATAG	0.408000												
SLC13A1	6561	broad.mit.edu	37	7	122787232	122787232	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:122787232A>C	uc003vkm.2	-	7	818	c.793T>G	c.(793-795)TTT>GTT	p.F265V	SLC13A1_uc010lks.2_Missense_Mutation_p.F141V	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	265						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	TACTCTGCAAAGATCAAGTTG	0.388000												
ASB15	142685	broad.mit.edu	37	7	123270123	123270123	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:123270123A>C	uc003vku.1	+	11	1836	c.1544A>C	c.(1543-1545)AAG>ACG	p.K515T	ASB15_uc003vkw.1_Missense_Mutation_p.K515T	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	515					intracellular signal transduction					skin(2)|lung(1)	3						GCTAAACTGAAGTCTGCACTA	0.368000												
CCDC136	64753	broad.mit.edu	37	7	128454771	128454771	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:128454771T>C	uc003vnv.1	+	15	3210	c.2843T>C	c.(2842-2844)GTA>GCA	p.V948A	CCDC136_uc003vnu.1_Intron|CCDC136_uc003vnw.1_Intron|CCDC136_uc003vnx.1_Missense_Mutation_p.V764A|CCDC136_uc010llq.1_Missense_Mutation_p.V317A|CCDC136_uc003vny.1_Intron	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	948	Potential.					integral to membrane	protein binding			ovary(2)	2						CGGCTTCTGGTAGTGCAGGAG	0.612000												
TNPO3	23534	broad.mit.edu	37	7	128619046	128619046	+	Silent	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:128619046T>A	uc003vol.1	-	16	2426	c.2052A>T	c.(2050-2052)CTA>CTT	p.L684L	TNPO3_uc010llx.1_Silent_p.L95L|TNPO3_uc003vom.1_Silent_p.L618L|TNPO3_uc010lly.1_Silent_p.L718L|TNPO3_uc010llz.1_Silent_p.L620L	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	684					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						CCTGTGTGACTAGTGGCTGCA	0.403000												
TNPO3	23534	broad.mit.edu	37	7	128645196	128645196	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:128645196T>C	uc003vol.1	-	5	944	c.570A>G	c.(568-570)AAA>AAG	p.K190K	TNPO3_uc003vom.1_Silent_p.K124K|TNPO3_uc010lly.1_Silent_p.K190K|TNPO3_uc010llz.1_Silent_p.K190K	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	190					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						CTGTTCCTGCTTTTTCTACAC	0.299000												
TSGA14	95681	broad.mit.edu	37	7	130039931	130039931	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:130039931T>G	uc003vpz.2	-	10	969	c.922A>C	c.(922-924)AAA>CAA	p.K308Q	TSGA14_uc003vpy.2_Missense_Mutation_p.K70Q|TSGA14_uc010lmf.2_Missense_Mutation_p.K105Q|TSGA14_uc003vqa.2_Intron|TSGA14_uc011kpg.1_Intron	NM_018718	NP_061188	Q9BYV8	CEP41_HUMAN	testis specific, 14	308					G2/M transition of mitotic cell cycle	centrosome|cytosol					0	Melanoma(18;0.0435)					TCTATCTTTTTTAAGTCTTCT	0.463000												
AKR1B15	441282	broad.mit.edu	37	7	134253009	134253009	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:134253009G>A	uc011kpr.1	+	4	549	c.250G>A	c.(250-252)GGA>AGA	p.G84R	AKR1B15_uc003vrt.2_Missense_Mutation_p.G56R|AKR1B15_uc011kps.1_Missense_Mutation_p.G56R	NM_001080538	NP_001074007	C9JRZ8	AK1BF_HUMAN	aldo-keto reductase family 1, member B15	84							oxidoreductase activity			ovary(1)	1						ACATGAGGTGGGAGAAGCCAT	0.507000												
DGKI	9162	broad.mit.edu	37	7	137270054	137270054	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:137270054T>C	uc003vtt.2	-	14	1465	c.1464A>G	c.(1462-1464)CAA>CAG	p.Q488Q	DGKI_uc003vtu.2_Silent_p.Q188Q	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	488	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						CATCTTCCACTTGACACAGGA	0.473000												
TBXAS1	6916	broad.mit.edu	37	7	139572126	139572126	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:139572126A>C	uc011kqv.1	+	2	349	c.185A>C	c.(184-186)CAG>CCG	p.Q62P	TBXAS1_uc003vvh.2_Missense_Mutation_p.Q62P|TBXAS1_uc010lne.2_5'UTR|TBXAS1_uc011kqu.1_Intron|TBXAS1_uc003vvi.2_Missense_Mutation_p.Q62P|TBXAS1_uc003vvj.2_Missense_Mutation_p.Q62P|TBXAS1_uc011kqw.1_Silent_p.P32P|TBXAS1_uc011kqx.1_Missense_Mutation_p.Q62P	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	61	Lumenal (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					TTTTTCCGCCAGGTAAGGGCT	0.343000												
SSPO	23145	broad.mit.edu	37	7	149475868	149475868	+	Splice_Site	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:149475868A>C	uc010lpk.2	+	7	836	c.836_splice	c.e7-2	p.G279_splice	SSPO_uc010lpl.1_Splice_Site	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor						cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TTCTGTGCCCAGGGCTGAGCC	0.622000												
GIMAP6	474344	broad.mit.edu	37	7	150325584	150325584	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:150325584T>G	uc003whn.2	-	3	526	c.102A>C	c.(100-102)GAA>GAC	p.E34D	GIMAP6_uc003whm.2_Intron	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	34							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGGTCTTCTGTTCTTTCTCCC	0.522000												
ACCN3	9311	broad.mit.edu	37	7	150749547	150749547	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr7:150749547C>T	uc003win.2	+	10	1871	c.1503C>T	c.(1501-1503)CTC>CTT	p.L501L	ACCN3_uc003wio.2_Silent_p.L501L|ACCN3_uc003wip.2_Intron|ACCN3_uc003wiq.2_RNA	NM_004769	NP_004760	Q9UHC3	ACCN3_HUMAN	amiloride-sensitive cation channel 3 isoform a	501	Cytoplasmic (Potential).				sensory perception|signal transduction	cytoplasm|integral to plasma membrane	ligand-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTCCCCACCTCAGCCTGGGCC	0.632000												
AGPAT5	55326	broad.mit.edu	37	8	6614805	6614805	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:6614805T>G	uc003wqo.2	+	8	1303	c.991T>G	c.(991-993)TTG>GTG	p.L331V	AGPAT5_uc011kwm.1_3'UTR	NM_018361	NP_060831	Q9NUQ2	PLCE_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 5	331					phospholipid biosynthetic process	integral to membrane|mitochondrion	1-acylglycerol-3-phosphate O-acyltransferase activity				0			STAD - Stomach adenocarcinoma(24;0.0578)	READ - Rectum adenocarcinoma(644;0.156)|COAD - Colon adenocarcinoma(149;0.191)		CTTAAGTGGTTTGACTGCAGG	0.408000												
MSR1	4481	broad.mit.edu	37	8	16025998	16025998	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:16025998T>G	uc003wwz.2	-	4	797	c.599A>C	c.(598-600)AAA>ACA	p.K200T	MSR1_uc010lsu.2_Missense_Mutation_p.K218T|MSR1_uc003wxa.2_Missense_Mutation_p.K200T|MSR1_uc003wxb.2_Missense_Mutation_p.K200T|MSR1_uc011kxz.1_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	200	Potential.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		CTCTTGGATTTTGCCATTCAG	0.413000												
PCM1	5108	broad.mit.edu	37	8	17851033	17851033	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:17851033A>G	uc003wyi.3	+	29	5154	c.4732A>G	c.(4732-4734)AGT>GGT	p.S1578G	PCM1_uc011kyh.1_Missense_Mutation_p.S1570G|PCM1_uc003wyj.3_Missense_Mutation_p.S1524G|PCM1_uc011kyi.1_Missense_Mutation_p.S377G|PCM1_uc011kyj.1_Missense_Mutation_p.S334G|PCM1_uc003wyk.3_Missense_Mutation_p.S260G|PCM1_uc011kyk.1_Missense_Mutation_p.S194G	NM_006197	NP_006188	Q15154	PCM1_HUMAN	pericentriolar material 1	1578	Interaction with HAP1.				centrosome organization|cilium assembly|G2/M transition of mitotic cell cycle|interkinetic nuclear migration|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome	centriolar satellite|cytosol|nuclear membrane|pericentriolar material	identical protein binding		PCM1/JAK2(30)	haematopoietic_and_lymphoid_tissue(30)|breast(4)|ovary(2)	36				Colorectal(111;0.0789)		ACAACCTGTAAGTGAAGTTTC	0.333000			T	RET|JAK2	papillary thyroid|CML|MPD							
REEP4	80346	broad.mit.edu	37	8	21997518	21997518	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:21997518A>C	uc003xau.1	-	4	714	c.261T>G	c.(259-261)CTT>CTG	p.L87L	REEP4_uc010ltt.1_Silent_p.L87L|REEP4_uc011kyz.1_Silent_p.L87L	NM_025232	NP_079508	Q9H6H4	REEP4_HUMAN	receptor accessory protein 4	87						integral to membrane				skin(1)	1				Colorectal(74;0.00187)|COAD - Colon adenocarcinoma(73;0.061)|READ - Rectum adenocarcinoma(644;0.0993)		ACTTGCGGTAAAGCAGGCTGG	0.552000												
PPP3CC	5533	broad.mit.edu	37	8	22380024	22380024	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:22380024T>G	uc003xbs.2	+	7	1118	c.791T>G	c.(790-792)TTT>TGT	p.F264C	PPP3CC_uc003xbr.1_Missense_Mutation_p.F264C|PPP3CC_uc011kzi.1_Missense_Mutation_p.F264C|PPP3CC_uc003xbt.2_Missense_Mutation_p.F264C|PPP3CC_uc011kzj.1_Translation_Start_Site	NM_005605	NP_005596	P48454	PP2BC_HUMAN	protein phosphatase 3, catalytic subunit, gamma	264					activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals	cytosol	calmodulin binding|metal ion binding|phosphoprotein phosphatase activity			ovary(1)	1		Prostate(55;0.104)		BRCA - Breast invasive adenocarcinoma(99;0.00756)|Colorectal(74;0.0238)|COAD - Colon adenocarcinoma(73;0.0835)		GTTTGTGAATTTTTGCAGAAC	0.328000												
EBF2	64641	broad.mit.edu	37	8	25766067	25766067	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:25766067A>C	uc003xes.1	-	7	573	c.556T>G	c.(556-558)TTT>GTT	p.F186V	PPP2R2A_uc003xek.2_Intron	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	186					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		AATTTTAAAAAGAATCTGTGA	0.373000												
C8orf80	389643	broad.mit.edu	37	8	27888776	27888776	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:27888776T>G	uc003xgm.3	-	15	2035	c.1892A>C	c.(1891-1893)AAT>ACT	p.N631T		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	631						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		GATCAGGAAATTTTTTTTGCA	0.453000												
RBPMS	11030	broad.mit.edu	37	8	30336863	30336863	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:30336863A>G	uc003xic.1	+	4	881	c.216A>G	c.(214-216)TCA>TCG	p.S72S	RBPMS_uc003xid.1_Silent_p.S72S|RBPMS_uc003xie.1_Silent_p.S72S|RBPMS_uc003xif.1_RNA|RBPMS_uc011lba.1_Silent_p.S72S|RBPMS_uc003xib.2_Silent_p.S72S|RBPMS_uc010lvh.1_5'UTR	NM_006867	NP_006858	Q93062	RBPMS_HUMAN	RNA-binding protein with multiple splicing	72	RRM.				positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	cytoplasm|nucleus	nucleotide binding|poly(A) RNA binding|protein binding|transcription coactivator activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(542;0.144)|Kidney(114;0.172)		ACAGTCGCTCAGAAGCAGAGG	0.383000												
RNF122	79845	broad.mit.edu	37	8	33408905	33408905	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:33408905T>G	uc003xjo.1	-	3	587	c.185A>C	c.(184-186)AAA>ACA	p.K62T		NM_024787	NP_079063	Q9H9V4	RN122_HUMAN	ring finger protein 122	62						endoplasmic reticulum|Golgi apparatus|integral to membrane	zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(67;0.0966)|Kidney(114;0.116)		GTTCCGCAGTTTGCTGGGAGA	0.498000												
KCNU1	157855	broad.mit.edu	37	8	36763254	36763254	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:36763254T>C	uc010lvw.2	+	20	2125	c.2038T>C	c.(2038-2040)TCT>CCT	p.S680P	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	680	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		AGAACAAGATTCTGACCAGCT	0.413000												
AP3M2	10947	broad.mit.edu	37	8	42019931	42019931	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:42019931A>C	uc003xop.2	+	5	869	c.578A>C	c.(577-579)AAA>ACA	p.K193T	AP3M2_uc003xoo.2_Missense_Mutation_p.K193T|AP3M2_uc010lxe.2_RNA|AP3M2_uc003xoq.1_Missense_Mutation_p.K78T|AP3M2_uc003xor.1_Missense_Mutation_p.K193T	NM_001134296	NP_001127768	P53677	AP3M2_HUMAN	adaptor-related protein complex 3, mu 2 subunit	193	MHD.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|Golgi apparatus					0	all_cancers(6;8.14e-25)|all_epithelial(6;2.41e-27)|all_lung(13;5.09e-13)|Lung NSC(13;8.38e-12)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|Colorectal(10;0.00165)|OV - Ovarian serous cystadenocarcinoma(14;0.00346)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)			ATTATTGATAAATCAGGTAGG	0.373000												
PLAT	5327	broad.mit.edu	37	8	42050649	42050649	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:42050649A>G	uc003xos.2	-	2	264	c.55T>C	c.(55-57)TTC>CTC	p.F19L	PLAT_uc010lxf.1_Missense_Mutation_p.F19L|PLAT_uc010lxg.1_Missense_Mutation_p.F19L|PLAT_uc003xot.2_Missense_Mutation_p.F19L|PLAT_uc011lcm.1_Missense_Mutation_p.F19L|PLAT_uc011lcn.1_Missense_Mutation_p.F19L	NM_000930	NP_000921	P00750	TPA_HUMAN	plasminogen activator, tissue isoform 1	19					blood coagulation|fibrinolysis|negative regulation of proteolysis|protein modification process|proteolysis	cell surface|cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			breast(1)|skin(1)	2	all_cancers(6;3.84e-26)|all_epithelial(6;9.61e-28)|all_lung(13;7.2e-13)|Lung NSC(13;1.18e-11)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000378)|Lung NSC(58;0.00145)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00135)|Colorectal(10;0.00165)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)		Alteplase(DB00009)|Aminocaproic Acid(DB00513)|Anistreplase(DB00029)|Iloprost(DB01088)|Reteplase(DB00015)|Tenecteplase(DB00031)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	GGCGAAACGAAGACTGCTCCA	0.562000												
THAP1	55145	broad.mit.edu	37	8	42693377	42693377	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:42693377G>A	uc003xpk.2	-	3	607	c.370C>T	c.(370-372)CAG>TAG	p.Q124*	THAP1_uc003xpl.2_3'UTR	NM_018105	NP_060575	Q9NVV9	THAP1_HUMAN	THAP domain containing, apoptosis associated	124					cell cycle|endothelial cell proliferation|regulation of mitotic cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	sequence-specific DNA binding|zinc ion binding				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Acute lymphoblastic leukemia(644;0.000299)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0377)|LUSC - Lung squamous cell carcinoma(45;0.0869)			ACAGGGGTCTGAAGAGGCGGC	0.483000												
PRKDC	5591	broad.mit.edu	37	8	48762039	48762039	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:48762039A>G	uc003xqi.2	-	54	7088	c.7031T>C	c.(7030-7032)CTG>CCG	p.L2344P	PRKDC_uc003xqj.2_Missense_Mutation_p.L2344P|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2344					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TTTCGCAACCAGTTCACACAG	0.378000								NHEJ				
PRKDC	5591	broad.mit.edu	37	8	48809800	48809800	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:48809800T>C	uc003xqi.2	-	30	3576	c.3519A>G	c.(3517-3519)TTA>TTG	p.L1173L	PRKDC_uc003xqj.2_Silent_p.L1173L|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1173					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CACAATGAGCTAAAAGCCACT	0.423000								NHEJ				
RP1	6101	broad.mit.edu	37	8	55542190	55542190	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:55542190A>C	uc003xsd.1	+	4	5896	c.5748A>C	c.(5746-5748)CAA>CAC	p.Q1916H	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1916					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTTGTGGTCAACATTGCCCAA	0.373000												
LYN	4067	broad.mit.edu	37	8	56879353	56879353	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:56879353A>C	uc003xsk.3	+	9	1152	c.870A>C	c.(868-870)GAA>GAC	p.E290D	LYN_uc003xsl.3_Missense_Mutation_p.E269D	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	290	Protein kinase.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			TCCTGGAAGAAGCCAACCTCA	0.507000												
ASPH	444	broad.mit.edu	37	8	62550538	62550538	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:62550538T>C	uc003xuj.2	-	12	1126	c.857A>G	c.(856-858)AAT>AGT	p.N286S	ASPH_uc011leg.1_Missense_Mutation_p.N257S|ASPH_uc003xuo.2_Missense_Mutation_p.N267S|ASPH_uc011leh.1_Missense_Mutation_p.N252S|ASPH_uc003xul.2_Missense_Mutation_p.N272S|ASPH_uc011lei.1_Missense_Mutation_p.N271S|ASPH_uc011lej.1_Missense_Mutation_p.N229S|ASPH_uc003xun.2_Missense_Mutation_p.N243S|ASPH_uc011lek.1_Missense_Mutation_p.N267S|ASPH_uc003xum.2_Missense_Mutation_p.N286S	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	286	Glu-rich.|Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	TTCTACAGGATTATCCTCAGG	0.323000												
ARFGEF1	10565	broad.mit.edu	37	8	68139716	68139716	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:68139716A>T	uc003xxo.1	-	26	4099	c.3709T>A	c.(3709-3711)TTA>ATA	p.L1237I	ARFGEF1_uc003xxl.1_Missense_Mutation_p.L691I|ARFGEF1_uc003xxn.1_Missense_Mutation_p.L220I	NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	1237					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			AAAGGTCTTAAGAAATCCTTC	0.363000												
NCOA2	10499	broad.mit.edu	37	8	71082536	71082536	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:71082536T>G	uc003xyn.1	-	6	604	c.442A>C	c.(442-444)AGG>CGG	p.R148R		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	148	PAS.				cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			TGGTTATACCTTAGATACTGT	0.423000			T	RUNXBP2	AML							
EYA1	2138	broad.mit.edu	37	8	72267124	72267124	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:72267124A>G	uc003xys.3	-	2	304	c.17T>C	c.(16-18)CTA>CCA	p.L6P	EYA1_uc003xyr.3_Missense_Mutation_p.L6P|EYA1_uc003xyt.3_Intron|EYA1_uc010lzf.2_5'UTR|EYA1_uc003xyu.2_Missense_Mutation_p.L6P|EYA1_uc011lfe.1_Missense_Mutation_p.L6P|EYA1_uc003xyv.2_5'UTR	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	6					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			CGGGCTGGTTAGATCCTGCAT	0.448000												
UBE2W	55284	broad.mit.edu	37	8	74742629	74742629	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:74742629T>G	uc003xzv.2	-	2	147	c.94A>C	c.(94-96)AAT>CAT	p.N32H	UBE2W_uc003xzt.2_Missense_Mutation_p.N32H|UBE2W_uc003xzu.2_Missense_Mutation_p.N43H|UBE2W_uc003xzw.2_RNA	NM_018299	NP_060769	Q96B02	UBE2W_HUMAN	ubiquitin-conjugating enzyme E2W (putative)	32					protein K11-linked ubiquitination|protein monoubiquitination		ATP binding|protein binding|ubiquitin-protein ligase activity				0	Breast(64;0.0311)		Epithelial(68;0.0235)|all cancers(69;0.0687)|BRCA - Breast invasive adenocarcinoma(89;0.069)			GTAATTGAATTTTGAACACTC	0.303000												
ZFHX4	79776	broad.mit.edu	37	8	77617339	77617339	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:77617339A>C	uc003yav.2	+	2	1403	c.1016A>C	c.(1015-1017)AAA>ACA	p.K339T	ZFHX4_uc003yat.1_Missense_Mutation_p.K339T|ZFHX4_uc003yau.1_Missense_Mutation_p.K339T|ZFHX4_uc003yaw.1_Missense_Mutation_p.K339T	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	339						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTGGAACCAAAAAAATCCACT	0.428000										HNSCC(33;0.089)		
CNGB3	54714	broad.mit.edu	37	8	87656904	87656904	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:87656904A>C	uc003ydx.2	-	9	1047	c.1001T>G	c.(1000-1002)TTT>TGT	p.F334C	CNGB3_uc010maj.2_Missense_Mutation_p.F196C	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	334	Extracellular (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						AAATTCAAAAAATGAAGTGTA	0.259000												
GDF6	392255	broad.mit.edu	37	8	97172781	97172781	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:97172781T>G	uc003yhp.2	-	1	240	c.140A>C	c.(139-141)AAG>ACG	p.K47T		NM_001001557	NP_001001557	Q6KF10	GDF6_HUMAN	growth differentiation factor 6 precursor	47					activin receptor signaling pathway|BMP signaling pathway|growth|pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(1)|breast(1)|pancreas(1)	3	Breast(36;2.67e-05)					CTTGCCTTCCTTGCGGCTTCG	0.667000												
ATP6V1C1	528	broad.mit.edu	37	8	104065044	104065044	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:104065044A>G	uc003ykz.3	+	6	712	c.467A>G	c.(466-468)AAG>AGG	p.K156R	ATP6V1C1_uc010mbz.2_Missense_Mutation_p.K81R|ATP6V1C1_uc003yla.2_Missense_Mutation_p.K156R|ATP6V1C1_uc011lhl.1_Missense_Mutation_p.K81R	NM_001695	NP_001686	P21283	VATC1_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit	156					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|plasma membrane|proton-transporting V-type ATPase, V1 domain	protein binding|proton-transporting ATPase activity, rotational mechanism				0	Lung NSC(17;0.000427)|all_lung(17;0.000533)		OV - Ovarian serous cystadenocarcinoma(57;3.57e-05)|STAD - Stomach adenocarcinoma(118;0.133)			TTGGAACGAAAGAATGCGTAA	0.368000												
KCNV1	27012	broad.mit.edu	37	8	110980514	110980514	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:110980514A>C	uc003ynr.3	-	3	1648	c.1306T>G	c.(1306-1308)TTC>GTC	p.F436V	KCNV1_uc010mcw.2_Missense_Mutation_p.F436V	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	436	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			TTCAAGGTGAAGTAGCAAGCA	0.428000												
ATAD2	29028	broad.mit.edu	37	8	124357232	124357232	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:124357232T>C	uc003yqh.3	-	19	2718	c.2610A>G	c.(2608-2610)GGA>GGG	p.G870G	ATAD2_uc011lii.1_Silent_p.G661G|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Silent_p.G870G	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	870					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TAAGTGTCGGTCCAACTATTT	0.408000												
ADCY8	114	broad.mit.edu	37	8	131795960	131795960	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:131795960A>G	uc003ytd.3	-	17	3501	c.3245T>C	c.(3244-3246)TTC>TCC	p.F1082S	ADCY8_uc010mds.2_Missense_Mutation_p.F951S	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1082	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AAAATTGTTGAATGAATGCTT	0.517000										HNSCC(32;0.087)		
ADCY8	114	broad.mit.edu	37	8	131796002	131796002	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:131796002A>C	uc003ytd.3	-	17	3459	c.3203T>G	c.(3202-3204)CTC>CGC	p.L1068R	ADCY8_uc010mds.2_Missense_Mutation_p.L937R	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1068	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TGTCAGGGCGAGTGAGAAGTC	0.478000										HNSCC(32;0.087)		
EFR3A	23167	broad.mit.edu	37	8	132991146	132991146	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:132991146T>C	uc003yte.2	+	13	1580	c.1379T>C	c.(1378-1380)TTC>TCC	p.F460S		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	460						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			CCAGGGTCTTTCCTGGATCCT	0.423000												
KCNK9	51305	broad.mit.edu	37	8	140631316	140631316	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:140631316C>T	uc003yvf.1	-	2	374	c.310G>A	c.(310-312)GAT>AAT	p.D104N	KCNK9_uc003yvg.1_Missense_Mutation_p.D104N|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	104	Extracellular (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			TTGCCCGCATCGGTGCCAGGT	0.612000												
ZNF251	90987	broad.mit.edu	37	8	145947158	145947158	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr8:145947158T>G	uc003zdv.3	-	5	2143	c.1887A>C	c.(1885-1887)AAA>AAC	p.K629N		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	629	C2H2-type 14; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		GGCTGAAGGCTTTCCCATACA	0.438000												
DOCK8	81704	broad.mit.edu	37	9	463649	463649	+	Missense_Mutation	SNP	A	A	C	rs145573166	byFrequency	TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:463649A>C	uc003zgf.2	+	47	6313	c.6201A>C	c.(6199-6201)GAA>GAC	p.E2067D	DOCK8_uc010mgu.2_Missense_Mutation_p.E1369D|DOCK8_uc010mgv.2_Missense_Mutation_p.E1967D|DOCK8_uc003zgk.2_Missense_Mutation_p.E1525D	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	2067					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		AAATTCCAGAACTGTACAAGC	0.473000												
KIAA0020	9933	broad.mit.edu	37	9	2811528	2811528	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:2811528A>G	uc003zhp.1	-	15	1564	c.1468T>C	c.(1468-1470)TTG>CTG	p.L490L	KIAA0020_uc010mhc.1_Silent_p.L489L|KIAA0020_uc003zhq.1_Silent_p.L489L	NM_014878	NP_055693	Q15397	K0020_HUMAN	KIAA0020 protein	490	PUM-HD.					endoplasmic reticulum|nucleolus	RNA binding			ovary(1)	1				GBM - Glioblastoma multiforme(50;0.0319)		TAGCTTAACAAAGCTGGAGAA	0.468000												
SLC1A1	6505	broad.mit.edu	37	9	4490700	4490700	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:4490700A>C	uc003zij.1	+	1	257	c.21A>C	c.(19-21)AAA>AAC	p.K7N		NM_004170	NP_004161	P43005	EAA3_HUMAN	solute carrier family 1, member 1	7	Cytoplasmic (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0		Acute lymphoblastic leukemia(2;0.0359)|Breast(48;0.0457)		GBM - Glioblastoma multiforme(50;0.0124)|Lung(218;0.183)	L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)	CGGCGAGGAAAGGATGCGAGT	0.701000												
CDC37L1	55664	broad.mit.edu	37	9	4685004	4685004	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:4685004A>G	uc003zio.2	+	2	470	c.260A>G	c.(259-261)GAG>GGG	p.E87G		NM_017913	NP_060383	Q7L3B6	CD37L_HUMAN	cell division cycle 37 homolog (S.	87	Potential.|Self-association.					cytoplasm					0	all_hematologic(13;0.137)	Breast(48;0.238)		GBM - Glioblastoma multiforme(50;0.0318)		CATAATTCTGAGTCCTTGGAT	0.458000												
RLN1	6013	broad.mit.edu	37	9	5335303	5335303	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:5335303T>G	uc003zjb.1	-	2	633	c.506A>C	c.(505-507)GAG>GCG	p.E169A		NM_006911	NP_008842	P04808	REL1_HUMAN	relaxin 1 preproprotein	169					female pregnancy|signal transduction	extracellular region	hormone activity				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.02)|Lung(218;0.0984)		GCAACATTTCTCAAACAGTGC	0.393000												
KIAA1432	57589	broad.mit.edu	37	9	5747306	5747306	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:5747306A>C	uc003zji.2	+	11	1109	c.1016A>C	c.(1015-1017)AAC>ACC	p.N339T	KIAA1432_uc003zjh.2_Missense_Mutation_p.N339T|KIAA1432_uc003zjl.3_Missense_Mutation_p.N339T|KIAA1432_uc003zjj.1_5'UTR	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a	418						integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		ATTTAGAGTAACCAAGAGCAG	0.418000												
KIAA1432	57589	broad.mit.edu	37	9	5763220	5763220	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:5763220T>G	uc003zji.2	+	18	2049	c.1956T>G	c.(1954-1956)CGT>CGG	p.R652R	KIAA1432_uc003zjh.2_Silent_p.R652R|KIAA1432_uc003zjl.3_Silent_p.R615R|KIAA1432_uc003zjj.1_Silent_p.R194R	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a	731						integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		AACAGAAACGTCACCTTCTGG	0.522000												
PTPRD	5789	broad.mit.edu	37	9	8338943	8338943	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:8338943T>G	uc003zkk.2	-	42	6069	c.5358A>C	c.(5356-5358)GAA>GAC	p.E1786D	PTPRD_uc003zkp.2_Missense_Mutation_p.E1380D|PTPRD_uc003zkq.2_Missense_Mutation_p.E1379D|PTPRD_uc003zkr.2_Missense_Mutation_p.E1370D|PTPRD_uc003zks.2_Missense_Mutation_p.E1379D|PTPRD_uc003zkl.2_Missense_Mutation_p.E1777D|PTPRD_uc003zkm.2_Missense_Mutation_p.E1773D|PTPRD_uc003zkn.2_Missense_Mutation_p.E1375D|PTPRD_uc003zko.2_Missense_Mutation_p.E1376D	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1786	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TGACCTTGAATTCCCTTAGGA	0.453000										TSP Lung(15;0.13)		
PTPRD	5789	broad.mit.edu	37	9	8636748	8636748	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:8636748T>G	uc003zkk.2	-	12	872	c.161A>C	c.(160-162)AAA>ACA	p.K54T	PTPRD_uc003zkp.2_Missense_Mutation_p.K54T|PTPRD_uc003zkq.2_Missense_Mutation_p.K54T|PTPRD_uc003zkr.2_Missense_Mutation_p.K54T|PTPRD_uc003zks.2_Missense_Mutation_p.K54T|PTPRD_uc003zkl.2_Missense_Mutation_p.K54T|PTPRD_uc003zkm.2_Missense_Mutation_p.K54T|PTPRD_uc003zkn.2_Missense_Mutation_p.K54T|PTPRD_uc003zko.2_Missense_Mutation_p.K54T|PTPRD_uc003zkt.1_Missense_Mutation_p.K54T	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	54	Ig-like C2-type 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CCAGACAATTTTAGGTCTTGG	0.468000										TSP Lung(15;0.13)		
BNC2	54796	broad.mit.edu	37	9	16436973	16436973	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:16436973T>C	uc003zml.2	-	6	1359	c.1219A>G	c.(1219-1221)AAT>GAT	p.N407D	BNC2_uc011lmw.1_Missense_Mutation_p.N312D|BNC2_uc003zmm.2_Missense_Mutation_p.N365D|BNC2_uc003zmq.1_Missense_Mutation_p.N421D|BNC2_uc003zmr.1_Missense_Mutation_p.N444D|BNC2_uc003zmp.1_Missense_Mutation_p.N435D|BNC2_uc010mij.1_Missense_Mutation_p.N329D|BNC2_uc011lmv.1_Missense_Mutation_p.N233D|BNC2_uc003zmo.1_Missense_Mutation_p.N329D|BNC2_uc003zmj.2_Missense_Mutation_p.N172D|BNC2_uc003zmk.2_RNA|BNC2_uc003zmi.2_Missense_Mutation_p.N172D|BNC2_uc003zmn.1_Missense_Mutation_p.N172D	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	407					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		GGGGCAGAATTCTGAATGGGA	0.473000												
BNC2	54796	broad.mit.edu	37	9	16738377	16738377	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:16738377A>C	uc003zml.2	-	2	250	c.110T>G	c.(109-111)GTT>GGT	p.V37G	BNC2_uc011lmw.1_Intron|BNC2_uc003zmm.2_Intron|BNC2_uc003zmq.1_Missense_Mutation_p.V51G|BNC2_uc003zmr.1_Missense_Mutation_p.V37G|BNC2_uc003zmp.1_Missense_Mutation_p.V37G|BNC2_uc010mij.1_Intron|BNC2_uc003zmu.1_RNA|BNC2_uc010mim.1_Intron|BNC2_uc010min.1_Intron	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	37					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		AGATGTATCAACCCCACAACA	0.423000												
PLIN2	123	broad.mit.edu	37	9	19120914	19120914	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:19120914C>T	uc003zno.2	-	5	738	c.559G>A	c.(559-561)GTA>ATA	p.V187I	PLIN2_uc011lna.1_Missense_Mutation_p.V159I|PLIN2_uc011lnb.1_Intron	NM_001122	NP_001113	Q99541	PLIN2_HUMAN	adipose differentiation-related protein	187					cellular lipid metabolic process	endoplasmic reticulum|extracellular region|lipid particle				ovary(2)	2						TACTGTTCTACCAACAGCTCT	0.428000												
KIAA1797	54914	broad.mit.edu	37	9	20995574	20995574	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:20995574A>G	uc003zog.1	+	46	5715	c.5352A>G	c.(5350-5352)AGA>AGG	p.R1784R	KIAA1797_uc003zoh.1_Silent_p.R1220R	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	1784						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		TGTCCTTGAGAGTTCTCCCAG	0.423000												
KIAA1797	54914	broad.mit.edu	37	9	20995592	20995592	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:20995592G>T	uc003zog.1	+	46	5733	c.5370G>T	c.(5368-5370)AAG>AAT	p.K1790N	KIAA1797_uc003zoh.1_Missense_Mutation_p.K1226N	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	1790						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		CAGAGTTTAAGAAGAAAGCTG	0.428000												
IFNW1	3467	broad.mit.edu	37	9	21141068	21141068	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:21141068T>C	uc003zol.1	-	1	1077	c.502A>G	c.(502-504)AGA>GGA	p.R168G		NM_002177	NP_002168	P05000	IFNW1_HUMAN	interferon, omega 1 precursor	168					cell cycle arrest|defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding				0				GBM - Glioblastoma multiforme(5;2.35e-185)|Lung(24;2.24e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		ATTTCCATTCTGACAACTTCC	0.438000												
NDUFB6	4712	broad.mit.edu	37	9	32558948	32558948	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:32558948T>G	uc003zre.1	-	3	402	c.278A>C	c.(277-279)AAA>ACA	p.K93T	NDUFB6_uc003zrf.1_Intron	NM_002493	NP_002484	O95139	NDUB6_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	93					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00199)	NADH(DB00157)	GCCATATGGTTTTTCCTGTAA	0.214000												
AQP3	360	broad.mit.edu	37	9	33443820	33443820	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:33443820T>G	uc003zsx.2	-	2	241	c.179A>C	c.(178-180)AAC>ACC	p.N60T	SUGT1P1_uc010mjq.1_Intron|AQP3_uc003zsv.1_Missense_Mutation_p.N60T|AQP3_uc003zsw.2_5'Flank|AQP3_uc010mju.2_Missense_Mutation_p.N60T	NM_004925	NP_004916	Q92482	AQP3_HUMAN	aquaporin 3	60	Helical; (Potential).				excretion|odontogenesis|positive regulation of immune system process|regulation of keratinocyte differentiation|response to calcium ion|response to retinoic acid|response to vitamin D	basolateral plasma membrane|cell-cell junction|cytoplasm	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.0899)		AAAGGCCAGGTTGATGGTGAG	0.602000												
UBAP2	55833	broad.mit.edu	37	9	33953371	33953371	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:33953371A>G	uc003ztq.1	-	12	1081	c.968T>C	c.(967-969)CTT>CCT	p.L323P	UBAP2_uc011loc.1_Missense_Mutation_p.L232P|UBAP2_uc011lod.1_Missense_Mutation_p.L56P|UBAP2_uc011loe.1_Missense_Mutation_p.L78P|UBAP2_uc011lof.1_Missense_Mutation_p.L248P|UBAP2_uc011log.1_Missense_Mutation_p.L269P|UBAP2_uc003ztr.2_Missense_Mutation_p.L195P|SNORD121A_uc010mjz.2_5'Flank	NM_018449	NP_060919	Q5T6F2	UBAP2_HUMAN	ubiquitin associated protein 2	323										ovary(3)	3			LUSC - Lung squamous cell carcinoma(29;0.00575)	GBM - Glioblastoma multiforme(74;0.168)		TGTGAAGACAAGGGCTTGGCC	0.517000												
DNAI1	27019	broad.mit.edu	37	9	34491532	34491532	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:34491532T>G	uc003zum.2	+	8	854	c.661T>G	c.(661-663)TTT>GTT	p.F221V		NM_012144	NP_036276	Q9UI46	DNAI1_HUMAN	dynein, axonemal, intermediate chain 1	221					cell projection organization	cilium axoneme|cytoplasm|dynein complex|microtubule	motor activity				0	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)|STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.0222)		CAGGACAAACTTTTCAGCCAC	0.493000									Kartagener_syndrome			
FBXO10	26267	broad.mit.edu	37	9	37518122	37518122	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:37518122T>C	uc004aab.2	-	9	2563	c.2514A>G	c.(2512-2514)AAA>AAG	p.K838K	FBXO10_uc004aac.2_Silent_p.K854K|FBXO10_uc004aad.2_Silent_p.K388K	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	838	PbH1 17.					ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		ACATACTCACTTTAGTGTCGG	0.557000												
MCART1	92014	broad.mit.edu	37	9	37888453	37888453	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:37888453T>G	uc004aau.2	-	3	839	c.95A>C	c.(94-96)AAG>ACG	p.K32T	MCART1_uc004aar.1_Intron|MCART1_uc004aaq.1_Intron|uc004aat.1_5'Flank|MCART1_uc004aav.2_Missense_Mutation_p.K32T	NM_033412	NP_219480	Q9H1U9	MCAR1_HUMAN	mitochondrial carrier triple repeat 1	32	Solcar 1.				transport	integral to membrane|mitochondrial inner membrane				ovary(2)|breast(1)	3				GBM - Glioblastoma multiforme(29;0.00559)|Lung(182;0.0422)		CAAGTAATGCTTCATCTCACC	0.418000												
FAM189A2	9413	broad.mit.edu	37	9	71992295	71992295	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:71992295T>A	uc010mon.1	+	5	366	c.262T>A	c.(262-264)TTT>ATT	p.F88I	FAM189A2_uc004ahg.2_Missense_Mutation_p.F88I|FAM189A2_uc010moo.1_5'UTR	NM_001127608	NP_001121080	Q15884	F1892_HUMAN	chromosome 9 open reading frame 61 precursor	88	Helical; (Potential).					integral to membrane					0						GAAAGTCCTCTTTGCCCTGTG	0.453000												
PCSK5	5125	broad.mit.edu	37	9	78772059	78772059	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:78772059A>G	uc004ajz.2	+	11	1949	c.1411A>G	c.(1411-1413)AGC>GGC	p.S471G	PCSK5_uc004ajy.2_Missense_Mutation_p.S471G|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	471	Homo B/P.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						GTGTGTGGAGAGCACAGACCG	0.517000												
VPS13A	23230	broad.mit.edu	37	9	79936645	79936645	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:79936645T>C	uc004akr.2	+	44	6073	c.5813T>C	c.(5812-5814)CTC>CCC	p.L1938P	VPS13A_uc004akp.3_Missense_Mutation_p.L1938P|VPS13A_uc004akq.3_Missense_Mutation_p.L1938P|VPS13A_uc004aks.2_Missense_Mutation_p.L1899P|VPS13A_uc004akt.2_Missense_Mutation_p.L278P	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1938					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						AGCAGCAAACTCTTCTTCATT	0.303000												
VPS13A	23230	broad.mit.edu	37	9	79954519	79954519	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:79954519A>C	uc004akr.2	+	48	6726	c.6466A>C	c.(6466-6468)AAA>CAA	p.K2156Q	VPS13A_uc004akp.3_Missense_Mutation_p.K2156Q|VPS13A_uc004akq.3_Missense_Mutation_p.K2156Q|VPS13A_uc004aks.2_Missense_Mutation_p.K2117Q	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2156					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						GCTACATTTAAAATTACTTGA	0.338000												
TLE4	7091	broad.mit.edu	37	9	82336771	82336771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:82336771C>T	uc004ald.2	+	18	2878	c.2029C>T	c.(2029-2031)CGG>TGG	p.R677W	TLE4_uc004alc.2_Missense_Mutation_p.R652W|TLE4_uc010mpr.2_Missense_Mutation_p.R531W|TLE4_uc004ale.2_Missense_Mutation_p.R289W|TLE4_uc011lsq.1_Missense_Mutation_p.R620W|TLE4_uc010mps.2_Missense_Mutation_p.R576W|TLE4_uc004alf.2_Missense_Mutation_p.R591W	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						GCGCGAGGGGCGGCAGCTGCA	0.468000												
TLE1	7088	broad.mit.edu	37	9	84230907	84230907	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:84230907T>C	uc004aly.2	-	11	1349	c.908A>G	c.(907-909)GAA>GGA	p.E303G	TLE1_uc004alz.2_Missense_Mutation_p.E313G|TLE1_uc011lsr.1_Missense_Mutation_p.E303G|TLE1_uc004ama.1_Missense_Mutation_p.E303G|TLE1_uc011lss.1_Missense_Mutation_p.E229G	NM_005077	NP_005068	Q04724	TLE1_HUMAN	transducin-like enhancer protein 1	303	Pro/Ser-rich.				negative regulation of Wnt receptor signaling pathway|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway		transcription factor binding			ovary(1)|skin(1)	2						CAAGCTCATTTCTTTGGATTT	0.443000												
NFIL3	4783	broad.mit.edu	37	9	94172426	94172426	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:94172426T>G	uc004arh.2	-	2	986	c.591A>C	c.(589-591)GAA>GAC	p.E197D		NM_005384	NP_005375	Q16649	NFIL3_HUMAN	nuclear factor, interleukin 3 regulated	197	Ser-rich.				circadian rhythm|immune response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0						CCTGCGTGTGTTCTACTGAGG	0.478000												
PTCH1	5727	broad.mit.edu	37	9	98231052	98231052	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:98231052A>G	uc004avk.3	-	14	2419	c.2231T>C	c.(2230-2232)CTC>CCC	p.L744P	PTCH1_uc010mro.2_Missense_Mutation_p.L593P|PTCH1_uc010mrp.2_Missense_Mutation_p.L593P|PTCH1_uc010mrq.2_Missense_Mutation_p.L593P|PTCH1_uc004avl.3_Missense_Mutation_p.L593P|PTCH1_uc010mrr.2_Missense_Mutation_p.L678P|PTCH1_uc004avm.3_Missense_Mutation_p.L743P|PTCH1_uc010mrs.1_Missense_Mutation_p.L412P	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	744	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				TGGTTTCAAGAGGAAAGGAGC	0.473000									Basal_Cell_Nevus_syndrome			
PTCH1	5727	broad.mit.edu	37	9	98244295	98244295	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:98244295T>G	uc004avk.3	-	5	870	c.682A>C	c.(682-684)ATT>CTT	p.I228L	PTCH1_uc010mro.2_Missense_Mutation_p.I77L|PTCH1_uc010mrp.2_Missense_Mutation_p.I77L|PTCH1_uc010mrq.2_Missense_Mutation_p.I77L|PTCH1_uc004avl.3_Missense_Mutation_p.I77L|PTCH1_uc010mrr.2_Missense_Mutation_p.I162L|PTCH1_uc004avm.3_Missense_Mutation_p.I227L|PTCH1_uc010mrs.1_5'Flank|PTCH1_uc010mrt.1_RNA|PTCH1_uc010mru.1_Intron|PTCH1_uc004avo.2_Missense_Mutation_p.I162L|PTCH1_uc010mrv.1_RNA	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	228	Extracellular (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				GGTGTAATAATCAAACAAGGG	0.418000									Basal_Cell_Nevus_syndrome			
CTSL2	1515	broad.mit.edu	37	9	99797109	99797109	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:99797109T>C	uc004awt.2	-	7	1001	c.804A>G	c.(802-804)CCA>CCG	p.P268P	CTSL2_uc010msi.2_Silent_p.P268P|CTSL2_uc004awu.2_Silent_p.P213P|CTSL2_uc010msj.1_Silent_p.P213P	NM_001333	NP_001324	O60911	CATL2_HUMAN	cathepsin L2 preproprotein	268						lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(62;0.0559)				TGCTGCAGTCTGGTTCAAAAT	0.473000												
FOXE1	2304	broad.mit.edu	37	9	100617166	100617166	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:100617166T>G	uc004axu.2	+	1	1630	c.970T>G	c.(970-972)TTC>GTC	p.F324V		NM_004473	NP_004464	O00358	FOXE1_HUMAN	forkhead box E1	324					cell migration|embryonic organ morphogenesis|hair follicle morphogenesis|hard palate development|lens morphogenesis in camera-type eye|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|peripheral nervous system development|pharynx development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|soft palate development|thymus development|thyroid gland development|thyroid hormone generation	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		Acute lymphoblastic leukemia(62;0.158)				CACGGTGGACTTCTACGGGCG	0.741000												
COL15A1	1306	broad.mit.edu	37	9	101810103	101810103	+	Silent	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:101810103T>C	uc004azb.1	+	27	2921	c.2715T>C	c.(2713-2715)TTT>TTC	p.F905F		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	905	Triple-helical region 5 (COL5).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				AAGGAGAATTTGGCCTTCCCG	0.537000												
OR13C3	138803	broad.mit.edu	37	9	107298596	107298596	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:107298596T>C	uc004bcb.1	-	1	499	c.499A>G	c.(499-501)AGC>GGC	p.S167G		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	167	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						GCCACCTTGCTCAGGATGATG	0.488000												
SVEP1	79987	broad.mit.edu	37	9	113220835	113220835	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:113220835A>C	uc010mtz.2	-	20	3829	c.3492T>G	c.(3490-3492)AGT>AGG	p.S1164R	SVEP1_uc010mua.1_Missense_Mutation_p.S1164R	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1164					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AGAAAGTTGAACTAAAACCTA	0.408000												
ZNF883	169834	broad.mit.edu	37	9	115759766	115759766	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:115759766A>C	uc011lwy.1	-	5	2013	c.774T>G	c.(772-774)ACT>ACG	p.T258T		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	258	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTCCAGTATGAGTTCTCTGGT	0.388000												
ZFP37	7539	broad.mit.edu	37	9	115806455	115806455	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:115806455T>G	uc004bgm.1	-	4	471	c.443A>C	c.(442-444)AAG>ACG	p.K148T	ZFP37_uc011lwz.1_Missense_Mutation_p.K163T|ZFP37_uc011lxa.1_Missense_Mutation_p.K149T	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	148						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GCCATTCTTCTTAGCTTGAGT	0.358000												
PAPPA	5069	broad.mit.edu	37	9	119115949	119115949	+	Silent	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:119115949A>C	uc004bjn.2	+	17	4605	c.4224A>C	c.(4222-4224)GGA>GGC	p.G1408G	PAPPA_uc011lxq.1_Silent_p.G783G	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1408	Sushi 3.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GGCAGGAGGGAGCTTGTGTTC	0.507000												
GSN	2934	broad.mit.edu	37	9	124079367	124079367	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:124079367T>C	uc004blf.1	+	7	971	c.910T>C	c.(910-912)TCC>CCC	p.S304P	GSN_uc004bld.1_Missense_Mutation_p.S253P|GSN_uc010mvq.1_Missense_Mutation_p.S264P|GSN_uc010mvr.1_Missense_Mutation_p.S264P|GSN_uc010mvu.1_Missense_Mutation_p.S253P|GSN_uc010mvt.1_Missense_Mutation_p.S253P|GSN_uc010mvs.1_Missense_Mutation_p.S253P|GSN_uc004ble.1_Missense_Mutation_p.S253P|GSN_uc010mvv.1_Missense_Mutation_p.S253P|GSN_uc011lyh.1_Missense_Mutation_p.S270P|GSN_uc011lyi.1_Missense_Mutation_p.S253P|GSN_uc011lyj.1_Missense_Mutation_p.S277P|GSN_uc004blg.1_Missense_Mutation_p.S35P	NM_000177	NP_000168	P06396	GELS_HUMAN	gelsolin isoform a precursor	304					actin filament polymerization|actin filament severing|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|cilium morphogenesis	actin cytoskeleton|cytosol	actin binding|calcium ion binding|protein binding			breast(2)|ovary(1)	3						CCCTCAGGTCTCCAATGGTGC	0.622000												
NUP214	8021	broad.mit.edu	37	9	134016018	134016018	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:134016018T>G	uc004cag.2	+	11	1326	c.1215T>G	c.(1213-1215)AAT>AAG	p.N405K	NUP214_uc004cah.2_Missense_Mutation_p.N405K|NUP214_uc004caf.1_Missense_Mutation_p.N405K	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	405					carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		ATATGATTAATCAAAATCCTG	0.418000			T	DEK|SET|ABL1	AML|T-ALL							
NUP214	8021	broad.mit.edu	37	9	134038401	134038401	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:134038401A>G	uc004cag.2	+	19	2675	c.2564A>G	c.(2563-2565)GAG>GGG	p.E855G	NUP214_uc004cah.2_Missense_Mutation_p.E845G|NUP214_uc004cai.2_Missense_Mutation_p.E285G|NUP214_uc004caf.1_Missense_Mutation_p.E844G|NUP214_uc010mzf.2_Missense_Mutation_p.E153G	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	855	11 X 5 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		CCAGAGCGAGAGACACTGTTT	0.438000			T	DEK|SET|ABL1	AML|T-ALL							
TTF1	7270	broad.mit.edu	37	9	135266034	135266034	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:135266034T>G	uc004cbl.2	-	7	2224	c.2172A>C	c.(2170-2172)GAA>GAC	p.E724D	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_Missense_Mutation_p.E209D	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	724	Myb-like 2.				negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		TAGCTTCTACTTCTACCCAAG	0.428000												
GFI1B	8328	broad.mit.edu	37	9	135865169	135865169	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:135865169A>G	uc004ccg.2	+	6	840	c.689A>G	c.(688-690)AAG>AGG	p.K230R	GFI1B_uc010mzy.2_Missense_Mutation_p.K184R	NM_004188	NP_004179	Q5VTD9	GFI1B_HUMAN	growth factor independent 1B transcription	230	Mediates interaction with GATA1.|C2H2-type 3.|Interaction with ARIH2.				cell proliferation|chromatin modification|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;9.04e-07)|Epithelial(140;1.17e-05)		AAGGCCTTCAAGCGCTCGTCC	0.667000												
BRD3	8019	broad.mit.edu	37	9	136906979	136906979	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:136906979G>A	uc004cew.2	-	8	1498	c.1310C>T	c.(1309-1311)GCT>GTT	p.A437V	BRD3_uc004cex.2_Missense_Mutation_p.A437V	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	437						nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		GCTGCTCTCAGCGCCCTTGCT	0.677000			T	NUT|C15orf55	lethal midline carcinoma of young people							
PNPLA7	375775	broad.mit.edu	37	9	140441763	140441763	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr9:140441763A>C	uc004cnf.2	-	2	453	c.116T>G	c.(115-117)TTT>TGT	p.F39C	PNPLA7_uc010ncj.1_Missense_Mutation_p.F64C	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	39					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		ATACTCACGAAATTGTCTAAG	0.587000												
PLCXD1	55344	broad.mit.edu	37	X	205517	205517	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:205517T>C	uc004cpc.2	+	3	557	c.245T>C	c.(244-246)CTG>CCG	p.L82P	PLCXD1_uc011mgx.1_RNA	NM_018390	NP_060860	Q9NUJ7	PLCX1_HUMAN	phosphatidylinositol-specific phospholipase C, X	82	PI-PLC X-box.				intracellular signal transduction|lipid metabolic process		phospholipase C activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCTGTCGTGCTGAAATGGTCC	0.637000												
SHOX	6473	broad.mit.edu	37	X	595445	595445	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:595445T>G	uc004cph.1	+	3	1061	c.370T>G	c.(370-372)TTC>GTC	p.F124V	SHOX_uc004cpi.2_Missense_Mutation_p.F124V	NM_000451	NP_000442	O15266	SHOX_HUMAN	short stature homeobox isoform SHOXa	124	Homeobox.				skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCGCACCAACTTCACGCTGGA	0.617000												
CSF2RA	1438	broad.mit.edu	37	X	1419418	1419418	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:1419418A>G	uc010nct.2	+	11	1167	c.845A>G	c.(844-846)AAC>AGC	p.N282S	CSF2RA_uc011mhb.1_Missense_Mutation_p.N282S|CSF2RA_uc004cpq.2_Intron|CSF2RA_uc004cpn.2_Missense_Mutation_p.N282S|CSF2RA_uc004cpo.2_Missense_Mutation_p.N282S|CSF2RA_uc010ncu.2_Intron|CSF2RA_uc011mhc.1_Missense_Mutation_p.N149S|CSF2RA_uc004cpp.2_Missense_Mutation_p.N282S|CSF2RA_uc010ncv.2_Missense_Mutation_p.N282S|CSF2RA_uc004cpr.2_Missense_Mutation_p.N282S	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	282	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	AATAGATACAACTTTCCAAGC	0.423000												
ASB9	140462	broad.mit.edu	37	X	15268632	15268632	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:15268632T>G	uc004cwl.2	-	5	735	c.488A>C	c.(487-489)AAG>ACG	p.K163T	ASB9_uc004cwk.2_Missense_Mutation_p.K163T|ASB9_uc004cwm.2_Missense_Mutation_p.K153T|ASB9_uc010ner.2_Missense_Mutation_p.K163T|ASB9_uc004cwn.2_Missense_Mutation_p.K134T	NM_001031739	NP_001026909	Q96DX5	ASB9_HUMAN	ankyrin repeat and SOCS box-containing 9 isoform	163					intracellular signal transduction						0	Hepatocellular(33;0.183)					GTGGCTGATCTTATGGTCAAT	0.468000												
SCML1	6322	broad.mit.edu	37	X	17771450	17771450	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:17771450A>G	uc004cyb.2	+	8	1253	c.928A>G	c.(928-930)ACG>GCG	p.T310A	SCML1_uc004cyc.2_Missense_Mutation_p.T283A|SCML1_uc004cyd.2_Missense_Mutation_p.T189A|SCML1_uc004cye.2_Missense_Mutation_p.T189A	NM_001037540	NP_001032629	Q9UN30	SCML1_HUMAN	sex comb on midleg-like 1 isoform a	310	SAM.				anatomical structure morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)	3	Hepatocellular(33;0.183)					GAAGCTGGGAACGGCTGTGAA	0.428000												
PHKA2	5256	broad.mit.edu	37	X	18924619	18924619	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:18924619A>G	uc004cyv.3	-	25	3230	c.2800T>C	c.(2800-2802)TGC>CGC	p.C934R	PHKA2_uc004cyu.3_Missense_Mutation_p.C232R|PHKA2_uc010nfe.1_5'Flank|PHKA2_uc010nff.1_5'Flank	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	934					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					TCACCTGAGCAGTTCAGGCTC	0.622000												
PTCHD1	139411	broad.mit.edu	37	X	23398122	23398122	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:23398122T>G	uc004dal.3	+	2	774	c.766T>G	c.(766-768)TCA>GCA	p.S256A	PTCHD1_uc010nfu.1_Missense_Mutation_p.S256A	NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	256					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						CACGTCCTCCTCACTGAGGGA	0.507000												
FAM48B1	100130302	broad.mit.edu	37	X	24380992	24380992	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:24380992A>C	uc011mjx.1	+	1	115	c.115A>C	c.(115-117)AAA>CAA	p.K39Q		NM_001136234	NP_001129706			hypothetical protein LOC100130302											kidney(1)	1						TCTGCAGGAAAAACTTTATGA	0.423000												
MAGEB2	4113	broad.mit.edu	37	X	30237447	30237447	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:30237447A>T	uc004dbz.2	+	2	853	c.750A>T	c.(748-750)AAA>AAT	p.K250N		NM_002364	NP_002355	O15479	MAGB2_HUMAN	melanoma antigen family B, 2	250	MAGE.						protein binding			ovary(1)	1						TCATCACCAAAGATCTGGTGC	0.507000												
GK	2710	broad.mit.edu	37	X	30737592	30737592	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:30737592T>G	uc004dch.3	+	15	1290	c.1111T>G	c.(1111-1113)TCG>GCG	p.S371A	GK_uc010ngj.2_Missense_Mutation_p.S365A|GK_uc004dci.3_Missense_Mutation_p.S365A|GK_uc011mjz.1_Missense_Mutation_p.S166A|GK_uc011mka.1_Missense_Mutation_p.S208A|GK_uc010ngk.2_Missense_Mutation_p.S160A	NM_203391	NP_976325	P32189	GLPK_HUMAN	glycerol kinase isoform a	371					glycerol-3-phosphate metabolic process|triglyceride biosynthetic process	cytosol|mitochondrial outer membrane	ATP binding|glycerol kinase activity			central_nervous_system(1)	1						CCCAGCATTTTCGGGGTTATA	0.363000												
SYTL5	94122	broad.mit.edu	37	X	37984761	37984761	+	Splice_Site	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:37984761T>G	uc004ddu.2	+	17	2584	c.2050_splice	c.e17+2	p.G684_splice	SYTL5_uc004ddv.2_Splice_Site_p.G684_splice|SYTL5_uc004ddx.2_Splice_Site_p.G706_splice	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1						intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						CTGGAAGTGGTGAGGGATTTG	0.468000												
RPGR	6103	broad.mit.edu	37	X	38169936	38169936	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:38169936A>G	uc004ded.1	-	7	878	c.710T>C	c.(709-711)CTG>CCG	p.L237P	RPGR_uc004deb.2_Missense_Mutation_p.L237P|RPGR_uc004dea.2_RNA|RPGR_uc004dec.2_RNA	NM_001034853	NP_001030025	Q92834	RPGR_HUMAN	retinitis pigmentosa GTPase regulator isoform C	237	RCC1 4.				intracellular protein transport|response to stimulus|visual perception	Golgi apparatus|photoreceptor outer segment	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						TTCAGACACCAGCTGGGGTGT	0.507000												
EFHC2	80258	broad.mit.edu	37	X	44109672	44109672	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:44109672G>T	uc004dgb.3	-	6	716	c.626C>A	c.(625-627)CCC>CAC	p.P209H		NM_025184	NP_079460	Q5JST6	EFHC2_HUMAN	EF-hand domain (C-terminal) containing 2	209							calcium ion binding			breast(3)|ovary(2)|central_nervous_system(1)	6						GGGACGTAAGGGCTCTACGTG	0.418000												
RGN	9104	broad.mit.edu	37	X	46951102	46951102	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:46951102A>G	uc004dgz.1	+	6	1557	c.588A>G	c.(586-588)CTA>CTG	p.L196L	RGN_uc004dha.1_Silent_p.L196L|RGN_uc010nho.1_Silent_p.L143L|RGN_uc010nhp.1_Silent_p.L124L	NM_152869	NP_690608	Q15493	RGN_HUMAN	regucalcin	196					cellular calcium ion homeostasis|positive regulation of ATPase activity|regulation of calcium-mediated signaling	cytoplasm|nucleus	calcium ion binding|enzyme regulator activity|gluconolactonase activity|zinc ion binding				0						TTTACAAGCTAGAAAAGGAAG	0.423000												
CCNB3	85417	broad.mit.edu	37	X	50051989	50051989	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:50051989A>T	uc004dox.3	+	6	1118	c.820A>T	c.(820-822)ACT>TCT	p.T274S	CCNB3_uc004doy.2_Missense_Mutation_p.T274S|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	274					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					GAAGCCTAAAACTGAGGAGTC	0.423000												
MAGEE1	57692	broad.mit.edu	37	X	75648336	75648336	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:75648336A>C	uc004ecm.1	+	1	220	c.13A>C	c.(13-15)AGC>CGC	p.S5R		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	5						dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						GTCTCTGGTAAGCCAGAATTc	0.567000												
ZNF711	7552	broad.mit.edu	37	X	84510394	84510394	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:84510394T>G	uc004eeo.2	+	4	556	c.209T>G	c.(208-210)GTT>GGT	p.V70G	ZNF711_uc004eep.2_Missense_Mutation_p.V70G|ZNF711_uc004eeq.2_Missense_Mutation_p.V70G	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	70					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						GCAGCTGAAGTTGTCCATGGA	0.428000												
TAF7L	54457	broad.mit.edu	37	X	100536734	100536734	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:100536734T>A	uc004ehb.2	-	6	706	c.694A>T	c.(694-696)AAA>TAA	p.K232*	TAF7L_uc004eha.2_Nonsense_Mutation_p.K146*|TAF7L_uc004ehc.1_Nonsense_Mutation_p.K146*	NM_024885	NP_079161	Q5H9L4	TAF7L_HUMAN	TATA box binding protein-associated factor, RNA	232					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription initiation from RNA polymerase II promoter	cytoplasm|transcription factor TFIID complex	binding			breast(1)	1						CGGAACCTTTTCTTTCTGACA	0.378000												
GPRASP2	114928	broad.mit.edu	37	X	101970070	101970070	+	Silent	SNP	A	A	G	rs139738191	byFrequency	TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:101970070A>G	uc004ejk.2	+	4	1607	c.273A>G	c.(271-273)CAA>CAG	p.Q91Q	GPRASP2_uc004ejl.2_Silent_p.Q91Q|GPRASP2_uc004ejm.2_Silent_p.Q91Q|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	91						cytoplasm	protein binding			ovary(1)	1						CGGAGGCTCAAGGAATCACAG	0.577000												
GLRA4	441509	broad.mit.edu	37	X	102979114	102979114	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:102979114T>G	uc011mse.1	-	4	807	c.386A>C	c.(385-387)AAG>ACG	p.K129T	GLRA4_uc010nou.2_Missense_Mutation_p.K129T	NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	129	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						GAGGTCTGGCTTCCAGATAGA	0.512000												
NRK	203447	broad.mit.edu	37	X	105178289	105178289	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:105178289T>C	uc004emd.2	+	20	3655	c.3352T>C	c.(3352-3354)TCA>CCA	p.S1118P	NRK_uc010npc.1_Missense_Mutation_p.S786P	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1118							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						TGCCATTGACTCAGGTGCTGC	0.413000										HNSCC(51;0.14)		
MUM1L1	139221	broad.mit.edu	37	X	105450021	105450021	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:105450021T>A	uc004emf.1	+	4	1245	c.596T>A	c.(595-597)CTT>CAT	p.L199H	MUM1L1_uc004emg.1_Missense_Mutation_p.L199H	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	199										ovary(2)|pancreas(1)|skin(1)	4						TTCCCTTCACTTTCGGAAGAT	0.383000												
MID2	11043	broad.mit.edu	37	X	107167580	107167580	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:107167580T>A	uc004enl.2	+	8	2016	c.1443T>A	c.(1441-1443)TAT>TAA	p.Y481*	MID2_uc004enk.2_Nonsense_Mutation_p.Y451*	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	481	Fibronectin type-III.					centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						CAGGCCTGTATAATTCAGTAG	0.433000												
TEX13B	56156	broad.mit.edu	37	X	107225022	107225022	+	Silent	SNP	C	C	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:107225022C>T	uc004enn.1	-	2	429	c.336G>A	c.(334-336)ACG>ACA	p.T112T		NM_031273	NP_112563	Q9BXU2	TX13B_HUMAN	testis expressed 13B	112										ovary(1)	1						CCTTGAGTTCCGTCAGGTTTG	0.582000												
COL4A5	1287	broad.mit.edu	37	X	107863537	107863537	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:107863537T>A	uc004enz.1	+	31	2760	c.2558T>A	c.(2557-2559)CTT>CAT	p.L853H	COL4A5_uc011mso.1_Missense_Mutation_p.L853H|COL4A5_uc004eob.1_Missense_Mutation_p.L461H	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	853	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CCTCCTGGACTTGATGTTCCA	0.483000									Alport_syndrome_with_Diffuse_Leiomyomatosis			
CAPN6	827	broad.mit.edu	37	X	110489860	110489860	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:110489860T>C	uc004epc.1	-	13	2039	c.1871A>G	c.(1870-1872)AAG>AGG	p.K624R	CAPN6_uc011msu.1_Missense_Mutation_p.K369R	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	624					microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						GTGGCCTTGCTTGACTTTGGC	0.507000												
ATP1B4	23439	broad.mit.edu	37	X	119509228	119509228	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:119509228T>G	uc004esr.2	+	5	648	c.564T>G	c.(562-564)GGT>GGG	p.G188G	ATP1B4_uc004esq.2_Silent_p.G184G|ATP1B4_uc011mtx.1_Silent_p.G153G|ATP1B4_uc011mty.1_Silent_p.G145G	NM_001142447	NP_001135919	Q9UN42	AT1B4_HUMAN	ATPase, (Na+)/K+ transporting, beta 4	188	Perinuclear space (Potential).				ATP biosynthetic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to plasma membrane|nuclear inner membrane	sodium:potassium-exchanging ATPase activity			ovary(1)|skin(1)	2						ATGCTTTAGGTTATAATGACA	0.493000												
GLUD2	2747	broad.mit.edu	37	X	120182312	120182312	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:120182312A>T	uc004eto.2	+	1	851	c.774A>T	c.(772-774)AAA>AAT	p.K258N		NM_012084	NP_036216	P49448	DHE4_HUMAN	glutamate dehydrogenase 2 precursor	258					glutamate biosynthetic process|glutamate catabolic process	mitochondrial matrix	ADP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|leucine binding			pancreas(1)	1					L-Glutamic Acid(DB00142)|NADH(DB00157)	TTACTGGTAAACCCATCAGCC	0.488000												
GRIA3	2892	broad.mit.edu	37	X	122616702	122616702	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:122616702T>C	uc004etq.3	+	16	2785	c.2492T>C	c.(2491-2493)CTT>CCT	p.L831P	GRIA3_uc004etr.3_Missense_Mutation_p.L831P|GRIA3_uc004ets.3_RNA	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	831	Helical; (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	TTCTATATACTTGTCGGAGGT	0.468000												
ODZ1	10178	broad.mit.edu	37	X	123680875	123680875	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:123680875A>G	uc004euj.2	-	15	2564	c.2500T>C	c.(2500-2502)TGC>CGC	p.C834R	ODZ1_uc011muj.1_Missense_Mutation_p.C833R|ODZ1_uc010nqy.2_Missense_Mutation_p.C834R	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	834	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GAGCCCTGGCAGAGAGGACTT	0.398000												
USP26	83844	broad.mit.edu	37	X	132160803	132160803	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:132160803A>G	uc010nrm.1	-	6	1916	c.1446T>C	c.(1444-1446)ACT>ACC	p.T482T	USP26_uc011mvf.1_Silent_p.T482T	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	482					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					AAAGATCAAAAGTAGACTGAA	0.393000												
GPR112	139378	broad.mit.edu	37	X	135430503	135430503	+	Silent	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:135430503T>G	uc004ezu.1	+	6	4929	c.4638T>G	c.(4636-4638)GGT>GGG	p.G1546G	GPR112_uc010nsb.1_Silent_p.G1341G|GPR112_uc010nsc.1_Silent_p.G1313G	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1546	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TGCATCCAGGTTGTTTGAAAA	0.423000												
GPR112	139378	broad.mit.edu	37	X	135488095	135488095	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:135488095T>G	uc004ezu.1	+	23	9190	c.8899T>G	c.(8899-8901)TTC>GTC	p.F2967V	GPR112_uc010nsb.1_Missense_Mutation_p.F2762V	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2967	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GAGGAACTTTTTCTTGTATTT	0.438000												
AFF2	2334	broad.mit.edu	37	X	148037396	148037396	+	Silent	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:148037396A>G	uc004fcp.2	+	11	2300	c.1821A>G	c.(1819-1821)ACA>ACG	p.T607T	AFF2_uc004fcq.2_Silent_p.T597T|AFF2_uc004fcr.2_Silent_p.T568T|AFF2_uc011mxb.1_Silent_p.T572T|AFF2_uc004fcs.2_Silent_p.T574T|AFF2_uc011mxc.1_Silent_p.T248T	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	607					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCAGAAACAAAGGCTTTGA	0.473000												
MAMLD1	10046	broad.mit.edu	37	X	149671655	149671655	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:149671655A>G	uc004fee.1	+	5	2228	c.2152A>G	c.(2152-2154)AGC>GGC	p.S718G	MAMLD1_uc011mxu.1_Intron|MAMLD1_uc011mxv.1_Missense_Mutation_p.S693G|MAMLD1_uc011mxw.1_Missense_Mutation_p.S604G	NM_005491	NP_005482	Q13495	MAMD1_HUMAN	mastermind-like domain containing 1	718					male gonad development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(192;6.56e-05)					CCTGCCCGGCAGCTCCTTTGC	0.612000												
ZNF185	7739	broad.mit.edu	37	X	152100279	152100279	+	Silent	SNP	T	T	A			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:152100279T>A	uc010ntv.1	+	13	1015	c.978T>A	c.(976-978)GCT>GCA	p.A326A	ZNF185_uc011myg.1_Silent_p.A326A|ZNF185_uc011myh.1_Silent_p.A297A|ZNF185_uc011myi.1_Silent_p.A297A|ZNF185_uc011myj.1_Silent_p.A267A|ZNF185_uc011myk.1_Silent_p.A327A|ZNF185_uc004fgw.3_Silent_p.A105A|ZNF185_uc004fgu.2_Intron|ZNF185_uc004fgv.2_Silent_p.A23A	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	326						cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGGACTTGGCTGGTGAGGAGG	0.552000												
TMLHE	55217	broad.mit.edu	37	X	154736703	154736703	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chrX:154736703T>G	uc004fnn.2	-	6	1017	c.851A>C	c.(850-852)AAG>ACG	p.K284T	TMLHE_uc004fno.2_Missense_Mutation_p.K284T|TMLHE_uc004fnp.3_Missense_Mutation_p.K284T	NM_018196	NP_060666	Q9NVH6	TMLH_HUMAN	trimethyllysine hydroxylase, epsilon	284					carnitine biosynthetic process	mitochondrial matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|trimethyllysine dioxygenase activity			ovary(1)	1	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Succinic acid(DB00139)|Vitamin C(DB00126)	CTCAGGTGCCTTTTGAAGTAC	0.418000												
MYLK3	91807	broad.mit.edu	37	16	46755107	46755107	+	Splice_Site	DEL	T	T	-			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:46755106_46755106CT>C	uc002eei.4	-	9	2031	c.1915_splice	c.e9-1	p.P639_splice	MYLK3_uc010vge.2_Splice_Site_p.P298_splice	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	Homo sapiens myosin light chain kinase 3 (MYLK3), mRNA.	639	Protein kinase.				cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			central_nervous_system(2)|endometrium(1)|kidney(2)|large_intestine(7)|lung(11)|ovary(3)|prostate(3)|skin(5)|stomach(3)	37		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				TGTTCTCCGGCTGGGAAAGAA	0.463												
DMXL1	1657	broad.mit.edu	37	5	118502338	118502339	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:118502338_118502339insT	uc003ksd.2	+	22	5179_5180	c.4998_4999insT	c.(4996-5001)CAGTTTfs	p.Q1666fs	DMXL1_uc010jcl.1_Frame_Shift_Ins_p.Q1666fs	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1666_1667										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		GGATGACACAGTTTTTTGGACA	0.327												
USH2A	7399	broad.mit.edu	37	1	215972273	215972275	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr1:215972272_215972274CCTT>C	uc001hku.1	-	49	10320_10322	c.9933_9935AAGG>G	c.(9931-9936)gaagga>gaGa	p.G3312del		NM_206933	NP_996816	O75445	USH2A_HUMAN	Homo sapiens Usher syndrome 2A (autosomal recessive, mild) (USH2A), transcript variant 2, mRNA.	3312					maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding	p.E3311D(2)|p.G3312E(2)		NS(7)|breast(20)|central_nervous_system(3)|cervix(2)|endometrium(32)|haematopoietic_and_lymphoid_tissue(4)|kidney(13)|large_intestine(71)|liver(2)|lung(282)|ovary(25)|pancreas(2)|prostate(12)|skin(22)|stomach(7)|upper_aerodigestive_tract(20)|urinary_tract(3)	527				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTACACCACTCCTTCTTCTCCAC	0.498										HNSCC(13;0.011)		
NEUROD1	4760	broad.mit.edu	37	2	182542972	182542973	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr2:182542971_182542972T>TG	uc021vto.1	-	0	616_617	c.616_617A>CA	c.(616-618)cacfs	p.H206fs	CERKL_uc021vtm.1_Intron|CERKL_uc002uod.2_Intron|NEUROD1_uc002uof.3_Frame_Shift_Ins_p.H206fs|NEUROD1_uc021vtn.1_Frame_Shift_Ins_p.H206fs	NM_002500	NP_002491	Q13562	NDF1_HUMAN	Homo sapiens neurogenic differentiation 1 (NEUROD1), mRNA.	206					amacrine cell differentiation|cerebellum development|dentate gyrus development|embryonic organ morphogenesis|enteroendocrine cell differentiation|glucose homeostasis|inner ear development|insulin secretion|negative regulation of apoptosis|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of intestinal epithelial structure maintenance|response to glucose stimulus	cytoplasm|nucleus	E-box binding|chromatin binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			endometrium(3)|kidney(1)|large_intestine(6)|lung(9)|ovary(3)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	25			OV - Ovarian serous cystadenocarcinoma(117;0.088)			CGTCGGCAGGTGGGGGGGCATG	0.619												
KIAA0947	23379	broad.mit.edu	37	5	5460799	5460799	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:5460798_5460798GA>G	uc003jdm.4	+	12	1573	c.1351_1351GA>G	c.(1351-1353)gaafs	p.E451fs		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	Homo sapiens KIAA0947 (KIAA0947), mRNA.	451										breast(2)|central_nervous_system(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(5)|lung(14)|ovary(1)|prostate(4)|upper_aerodigestive_tract(1)	35						AACACTGAGAGAATCTTCTGC	0.413												
DMXL1	1657	broad.mit.edu	37	5	118502339	118502340	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr5:118502338_118502339G>GT	uc010jcl.1	+	21	5179_5180	c.4998_4999G>GT	c.(4996-5001)cagtttfs	p.Q1666fs	DMXL1_uc003ksd.2_Frame_Shift_Ins_p.Q1666fs|DMXL1_uc021ycw.1_Frame_Shift_Ins_p.Q1493fs	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Homo sapiens Dmx-like 1 (DMXL1), mRNA.	1666										breast(3)|central_nervous_system(1)|endometrium(14)|kidney(4)|large_intestine(20)|liver(6)|lung(28)|ovary(2)|prostate(5)|skin(2)|upper_aerodigestive_tract(1)	86		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		GGATGACACAGTTTTTTGGACA	0.327												
PHF10	55274	broad.mit.edu	37	6	170105268	170105268	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr6:170105267_170105267TA>T	uc011egy.2	-	10	1452	c.1373_1373TA>A	c.(1372-1374)tatfs	p.Y458fs	C6orf120_uc003qxb.3_3'UTR|PHF10_uc011egz.2_Frame_Shift_Del_p.Y456fs	NM_018288	NP_060758	Q8WUB8	PHF10_HUMAN	Homo sapiens PHD finger protein 10 (PHF10), transcript variant 1, mRNA.	458					nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	npBAF complex	zinc ion binding			endometrium(2)|large_intestine(2)|liver(3)|lung(4)|prostate(2)|urinary_tract(1)	14		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.4e-21)|BRCA - Breast invasive adenocarcinoma(81;1.4e-07)|GBM - Glioblastoma multiforme(31;0.00176)		AAAAGTATGATAACCTCTGTC	0.403												
TFAM	7019	broad.mit.edu	37	10	60154155	60154156	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:60154154_60154155CTG>C	uc001jkf.3	+	5	706_707	c.574_575CTG>C	c.(574-576)ctgfs	p.L192fs	TFAM_uc001jkg.3_Non-coding_Transcript	NM_003201	NP_003192	Q00059	TFAM_HUMAN	Homo sapiens transcription factor A, mitochondrial (TFAM), nuclear gene encoding mitochondrial protein, mRNA.	192					DNA-dependent DNA replication|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase I promoter|transcription initiation from mitochondrial promoter	mitochondrial nucleoid	mitochondrial light strand promoter sense binding|protein binding|sequence-specific DNA binding transcription factor activity			kidney(1)|large_intestine(1)|lung(4)|prostate(1)	7						CTGGAAAAATCTGTCTGACTCT	0.356												
LIPF	8513	broad.mit.edu	37	10	90427074	90427075	+	Frame_Shift_Ins	INS	-	-	TGGCAAGTTT			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr10:90427073_90427074A>ATGGCAAGTTT	uc001kfg.2	+	1	133_134	c.19_20A>ATGGCAAGTTT	c.(19-21)atgfs	p.M7fs	LIPF_uc009xtk.3_Frame_Shift_Ins_p.M7fs|LIPF_uc001kfh.2_Frame_Shift_Ins_p.M17fs|LIPF_uc010qmt.2_Frame_Shift_Ins_p.M17fs|LIPF_uc010qmu.2_Frame_Shift_Ins_p.M7fs	NM_004190	NP_004181	P07098	LIPG_HUMAN	Homo sapiens lipase, gastric (LIPF), transcript variant 2, mRNA.	7					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity			NS(1)|cervix(1)|kidney(1)|large_intestine(4)|lung(6)	13		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		GCTTTTAACAATGGCAAGTTTG	0.381												
OR10A6	390093	broad.mit.edu	37	11	7950098	7950098	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr11:7950097_7950097GT>G	uc010rbh.2	-	0	113	c.113_113AC>C	c.(112-114)accfs	p.T38fs		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	Homo sapiens olfactory receptor, family 10, subfamily A, member 6 (OR10A6), mRNA.	38					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.V37L(1)		breast(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(9)|lung(5)|ovary(1)|prostate(1)|skin(3)|urinary_tract(1)	22				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCCTATCAGGGTCACCAGATA	0.468												
MYLK3	91807	broad.mit.edu	37	16	46755107	46755107	+	Splice_Site	DEL	T	T	-			TCGA-BR-8589-01A-11D-2394-08	TCGA-BR-8589-10A-01D-2394-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bac4806-1772-4b40-b2d1-b55ed1674019	d5ee4fdc-25db-4fe2-b078-0406e217ee5a	g.chr16:46755106_46755106CT>C	uc002eei.4	-	9	2031	c.1915_splice	c.e9-1	p.P639_splice	MYLK3_uc010vge.2_Splice_Site_p.P298_splice	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	Homo sapiens myosin light chain kinase 3 (MYLK3), mRNA.	639	Protein kinase.				cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			central_nervous_system(2)|endometrium(1)|kidney(2)|large_intestine(7)|lung(11)|ovary(3)|prostate(3)|skin(5)|stomach(3)	37		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				TGTTCTCCGGCTGGGAAAGAA	0.463												
