Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values
ACOT7	11332	broad.mit.edu	37	1	6409812	6409812	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:6409812G>A	uc001ams.2	-	2	445	c.288C>T	c.(286-288)AAC>AAT	p.N96N	ACOT7_uc010nzq.1_Intron|ACOT7_uc001amt.2_Silent_p.N86N|ACOT7_uc001amu.2_RNA|ACOT7_uc001amv.2_RNA|ACOT7_uc001amq.2_Silent_p.N45N|ACOT7_uc001amr.2_Silent_p.N66N	NM_181864	NP_863654	O00154	BACH_HUMAN	acyl-CoA thioesterase 7 isoform hBACHb	96	Acyl coenzyme A hydrolase 1.					mitochondrion|nucleus	carboxylesterase activity|fatty-acyl-CoA binding|palmitoyl-CoA hydrolase activity				0	Ovarian(185;0.0634)|all_lung(157;0.175)	all_cancers(23;1.42e-38)|all_epithelial(116;3.96e-23)|all_lung(118;3.69e-08)|Lung NSC(185;8.52e-07)|all_hematologic(16;6.92e-06)|Colorectal(325;4.53e-05)|Acute lymphoblastic leukemia(12;5e-05)|all_neural(13;0.000164)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0393)|Medulloblastoma(700;0.211)		Epithelial(90;9.16e-37)|GBM - Glioblastoma multiforme(13;5.89e-29)|OV - Ovarian serous cystadenocarcinoma(86;7.63e-19)|Colorectal(212;1.27e-07)|COAD - Colon adenocarcinoma(227;2.06e-05)|Kidney(185;7.74e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00129)|BRCA - Breast invasive adenocarcinoma(365;0.00132)|STAD - Stomach adenocarcinoma(132;0.00195)|READ - Rectum adenocarcinoma(331;0.0481)		CCCTTACCCCGTTCTGGCTGT	0.642000												
SLC45A1	50651	broad.mit.edu	37	1	8384692	8384692	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:8384692C>T	uc001apb.2	+	1	303	c.303C>T	c.(301-303)TAC>TAT	p.Y101Y		NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	101	Helical; (Potential).				carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		AGTTCAGCTACGCCATGGAGA	0.632000												
CASZ1	54897	broad.mit.edu	37	1	10720568	10720568	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:10720568G>A	uc001aro.2	-	6	851	c.531C>T	c.(529-531)TAC>TAT	p.Y177Y	CASZ1_uc001arp.1_Silent_p.Y177Y|CASZ1_uc009vmx.2_Silent_p.Y201Y|CASZ1_uc001arq.1_Silent_p.Y36Y	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	177					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		TGGAGGCCGCGTAGTCCCGCA	0.652000												
EXOSC10	5394	broad.mit.edu	37	1	11141285	11141285	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:11141285C>T	uc001asa.2	-	11	1341	c.1291G>A	c.(1291-1293)GAG>AAG	p.E431K	EXOSC10_uc001asb.2_Missense_Mutation_p.E431K|EXOSC10_uc009vmy.1_Missense_Mutation_p.E431K	NM_001001998	NP_001001998	Q01780	EXOSX_HUMAN	exosome component 10 isoform 1	431					CUT catabolic process|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear polyadenylation-dependent rRNA catabolic process|nuclear retention of unspliced pre-mRNA at the site of transcription|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasm|nuclear exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5' exonuclease activity|exoribonuclease activity|identical protein binding|nucleotide binding|protein serine/threonine kinase activity|RNA binding			upper_aerodigestive_tract(1)	1	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.18e-07)|COAD - Colon adenocarcinoma(227;8.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000315)|Kidney(185;0.000832)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|READ - Rectum adenocarcinoma(331;0.0526)|STAD - Stomach adenocarcinoma(313;0.202)		AGCATCTCCTCGGGCAGAGGG	0.527000												
SPEN	23013	broad.mit.edu	37	1	16199321	16199321	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:16199321G>A	uc001axk.1	+	2	298	c.94G>A	c.(94-96)GTG>ATG	p.V32M	SPEN_uc010obp.1_5'Flank	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	32	By similarity.|RRM 1.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		ATATGGCCGCGTGGAAAGTGT	0.383000												
SPEN	23013	broad.mit.edu	37	1	16254696	16254696	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:16254696G>A	uc001axk.1	+	11	2165	c.1961G>A	c.(1960-1962)GGG>GAG	p.G654E	SPEN_uc010obp.1_Missense_Mutation_p.G613E	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	654	Arg-rich.|Tyr-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CCAGCTCGAGGGAGAGAGTTT	0.453000												
RNF186	54546	broad.mit.edu	37	1	20141050	20141050	+	Missense_Mutation	SNP	A	A	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:20141050A>T	uc001bcr.2	-	1	722	c.545T>A	c.(544-546)CTC>CAC	p.L182H		NM_019062	NP_061935	Q9NXI6	RN186_HUMAN	ring finger protein 186	182	Helical; (Potential).					integral to membrane	zinc ion binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;7.77e-05)|Kidney(64;0.000162)|GBM - Glioblastoma multiforme(114;0.00036)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GATGAAGGTGAGCACCCATCG	0.647000												
ALPL	249	broad.mit.edu	37	1	21900205	21900205	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:21900205G>A	uc001bet.2	+	9	1167	c.910G>A	c.(910-912)GTG>ATG	p.V304M	ALPL_uc010odn.1_Missense_Mutation_p.V252M|ALPL_uc010odo.1_Missense_Mutation_p.V249M|ALPL_uc010odp.1_Missense_Mutation_p.V227M|ALPL_uc001beu.3_Missense_Mutation_p.V304M	NM_000478	NP_000469	P05186	PPBT_HUMAN	tissue-nonspecific alkaline phosphatase	304					response to vitamin D|skeletal system development	anchored to membrane|cytoplasm|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		all_lung(284;2.19e-05)|Lung NSC(340;2.22e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;8.7e-28)|COAD - Colon adenocarcinoma(152;1.57e-05)|GBM - Glioblastoma multiforme(114;2.66e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000177)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00856)|READ - Rectum adenocarcinoma(331;0.0623)|Lung(427;0.146)	Amifostine(DB01143)	CAGGAACAACGTGACGGACCC	0.607000												
WNT4	54361	broad.mit.edu	37	1	22447972	22447972	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:22447972G>A	uc001bfs.3	-	3	515	c.411C>T	c.(409-411)GGC>GGT	p.G137G	WNT4_uc010odt.1_Silent_p.G74G	NM_030761	NP_110388	P56705	WNT4_HUMAN	wingless-type MMTV integration site family,	137					adrenal gland development|androgen biosynthetic process|anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|dermatome development|endoderm development|epithelial to mesenchymal transition|establishment of protein localization in plasma membrane|female gonad development|female sex determination|liver development|male gonad development|mesonephric tubule development|metanephric mesenchymal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of male gonad development|negative regulation of testicular blood vessel morphogenesis|negative regulation of testosterone biosynthetic process|negative regulation of transcription, DNA-dependent|oocyte development|paramesonephric duct development|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of collagen biosynthetic process|positive regulation of cortisol biosynthetic process|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|protein palmitoylation|renal vesicle formation|smooth muscle cell differentiation|somatotropin secreting cell differentiation|tertiary branching involved in mammary gland duct morphogenesis|thyroid-stimulating hormone-secreting cell differentiation|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|extracellular space|Golgi apparatus|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|signal transducer activity|transcription corepressor activity			ovary(1)	1		Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;6.55e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;9.02e-26)|Colorectal(126;1.71e-07)|COAD - Colon adenocarcinoma(152;1.17e-05)|GBM - Glioblastoma multiforme(114;2.01e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000568)|KIRC - Kidney renal clear cell carcinoma(1967;0.00277)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		TCCTGTCACAGCCGCACTTCT	0.672000												
EPHA8	2046	broad.mit.edu	37	1	22920095	22920095	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:22920095C>T	uc001bfx.1	+	7	1644	c.1519C>T	c.(1519-1521)CGC>TGC	p.R507C		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	507	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GCCGGGCACCCGCTACGTGTT	0.672000												
NIPAL3	57185	broad.mit.edu	37	1	24766677	24766677	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:24766677G>A	uc001bjh.2	+	3	516	c.109G>A	c.(109-111)GCC>ACC	p.A37T	NIPAL3_uc010oek.1_Missense_Mutation_p.A37T|NIPAL3_uc001bjg.2_Missense_Mutation_p.A37T|NIPAL3_uc009vrc.2_5'UTR	NM_020448	NP_065181	Q6P499	NPAL3_HUMAN	NIPA-like domain containing 3	37	Helical; (Potential).					integral to membrane					0						CCTGATTGGCGCCCTCTTGGC	0.537000												
SLC9A1	6548	broad.mit.edu	37	1	27432576	27432576	+	Missense_Mutation	SNP	C	C	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:27432576C>G	uc001bnm.2	-	5	1911	c.1285G>C	c.(1285-1287)GTG>CTG	p.V429L	SLC9A1_uc001bnl.2_5'Flank|SLC9A1_uc010ofk.1_Missense_Mutation_p.V90L|SLC9A1_uc001bnn.2_Missense_Mutation_p.V429L	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	429	Helical; Name=M10; (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	AGGCCCAGCACCCCTGCAGGG	0.602000												
SYTL1	84958	broad.mit.edu	37	1	27680310	27680310	+	Silent	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:27680310A>G	uc001bnw.1	+	15	1823	c.1656A>G	c.(1654-1656)CTA>CTG	p.L552L	SYTL1_uc001bnv.1_Silent_p.L540L|SYTL1_uc009vsu.1_Silent_p.L487L|SYTL1_uc009vsv.1_Silent_p.L552L	NM_032872	NP_116261	Q8IYJ3	SYTL1_HUMAN	synaptotagmin-like 1	552					exocytosis|intracellular protein transport	extrinsic to plasma membrane|melanosome|soluble fraction	neurexin binding|Rab GTPase binding			ovary(1)	1		Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0908)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-28)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.0013)|KIRC - Kidney renal clear cell carcinoma(1967;0.00158)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		ATGGCCTTCTACCCCTCAGAA	0.607000												
PTPRF	5792	broad.mit.edu	37	1	44086837	44086837	+	Silent	SNP	C	C	T	rs138441028		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:44086837C>T	uc001cjr.2	+	33	5929	c.5589C>T	c.(5587-5589)GGC>GGT	p.G1863G	PTPRF_uc001cjs.2_Silent_p.G1854G|PTPRF_uc001cju.2_Silent_p.G1252G|PTPRF_uc009vwt.2_Silent_p.G1423G|PTPRF_uc001cjv.2_Silent_p.G1334G|PTPRF_uc001cjw.2_Silent_p.G1089G	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1863	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GCTACGAGGGCGTGGTCGACA	0.622000												
DMAP1	55929	broad.mit.edu	37	1	44685093	44685093	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:44685093G>A	uc001clq.1	+	8	1002	c.922G>A	c.(922-924)GCA>ACA	p.A308T	DMAP1_uc001clr.1_Missense_Mutation_p.A308T|DMAP1_uc001cls.1_Missense_Mutation_p.A308T|DMAP1_uc010oku.1_Missense_Mutation_p.A298T	NM_001034024	NP_001029196	Q9NPF5	DMAP1_HUMAN	DNA methyltransferase 1 associated protein 1	308					DNA methylation|histone H2A acetylation|histone H4 acetylation|negative regulation of transcription, DNA-dependent|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex	DNA binding|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					TCCTGAGACTGCAGGCATCAA	0.572000												
USP24	23358	broad.mit.edu	37	1	55563749	55563749	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:55563749C>T	uc001cyg.3	-	44	4982	c.4982G>A	c.(4981-4983)CGT>CAT	p.R1661H		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	1821					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						AGCTTCTTCACGCTCATATCT	0.353000												
TACSTD2	4070	broad.mit.edu	37	1	59042211	59042211	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:59042211C>T	uc001cyz.3	-	1	956	c.618G>A	c.(616-618)CGG>CGA	p.R206R		NM_002353	NP_002344	P09758	TACD2_HUMAN	tumor-associated calcium signal transducer 2	206	Extracellular (Potential).				cell proliferation|cell surface receptor linked signaling pathway|visual perception	cytosol|integral to plasma membrane	receptor activity				0	all_cancers(7;6.54e-05)					ACGTGTTCTGCCGCAGCTCGA	0.647000												
USP1	7398	broad.mit.edu	37	1	62913077	62913077	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:62913077C>T	uc001daj.1	+	7	1643	c.1315C>T	c.(1315-1317)CGT>TGT	p.R439C	USP1_uc001dak.1_Missense_Mutation_p.R439C|USP1_uc001dal.1_Missense_Mutation_p.R439C	NM_001017415	NP_001017415	O94782	UBP1_HUMAN	ubiquitin specific protease 1	439					DNA repair|monoubiquitinated protein deubiquitination|regulation of DNA repair|response to UV|ubiquitin-dependent protein catabolic process	nucleoplasm	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1		all_neural(321;0.0281)		BRCA - Breast invasive adenocarcinoma(111;8.01e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00245)|OV - Ovarian serous cystadenocarcinoma(397;0.0535)		ATTAAGGACGCGTTGCTTGGA	0.368000												
LRRC7	57554	broad.mit.edu	37	1	70225942	70225942	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:70225942G>T	uc001dep.2	+	1	85	c.55G>T	c.(55-57)GGT>TGT	p.G19C	LRRC7_uc001deo.1_Missense_Mutation_p.G57C|LRRC7_uc009wbg.2_Translation_Start_Site	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	19						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						ATGTTTCCGAGGTGAAGAAGA	0.438000												
LRRC7	57554	broad.mit.edu	37	1	70446067	70446067	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:70446067A>C	uc001dep.2	+	7	633	c.603A>C	c.(601-603)GAA>GAC	p.E201D	LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	201	LRR 8.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						CCCAGCCTGAAGTTCTGGATC	0.348000												
C1orf173	127254	broad.mit.edu	37	1	75037321	75037321	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:75037321T>C	uc001dgg.2	-	14	4292	c.4073A>G	c.(4072-4074)GAG>GGG	p.E1358G		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1358	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TGCCAACACCTCCCTCTCCTC	0.517000												
ST6GALNAC3	256435	broad.mit.edu	37	1	76779497	76779497	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:76779497C>A	uc001dhh.2	+	2	189	c.26C>A	c.(25-27)TCT>TAT	p.S9Y	ST6GALNAC3_uc001dhg.3_Missense_Mutation_p.S9Y|ST6GALNAC3_uc010orh.1_Intron	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	9	Helical; Signal-anchor for type II membrane protein; (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						TAGAGAAAGTCTGTGATTGCT	0.378000												
SSX2IP	117178	broad.mit.edu	37	1	85130166	85130166	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:85130166G>A	uc001dkh.2	-	7	882	c.607C>T	c.(607-609)CGT>TGT	p.R203C	SSX2IP_uc001dkf.2_Missense_Mutation_p.R176C|SSX2IP_uc001dkg.2_RNA|SSX2IP_uc010orz.1_Missense_Mutation_p.R176C|SSX2IP_uc001dki.2_Missense_Mutation_p.R203C|SSX2IP_uc010osa.1_Missense_Mutation_p.R176C|SSX2IP_uc001dkj.2_Missense_Mutation_p.R203C|SSX2IP_uc009wci.2_Intron|SSX2IP_uc001dkk.1_Missense_Mutation_p.R199C	NM_014021	NP_054740	Q9Y2D8	ADIP_HUMAN	synovial sarcoma, X breakpoint 2 interacting	203	Potential.				cell adhesion	nucleus|protein complex				ovary(2)	2				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		TTATATTCACGCTCTTTTCTC	0.333000												
COL11A1	1301	broad.mit.edu	37	1	103388939	103388939	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:103388939G>A	uc001dul.2	-	47	3925	c.3607C>T	c.(3607-3609)CCA>TCA	p.P1203S	COL11A1_uc001duk.2_Missense_Mutation_p.P399S|COL11A1_uc001dum.2_Missense_Mutation_p.P1215S|COL11A1_uc001dun.2_Missense_Mutation_p.P1164S|COL11A1_uc009weh.2_Missense_Mutation_p.P1087S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1203	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GGTGGGCCTGGCAGACCCTAA	0.333000												
KCNC4	3749	broad.mit.edu	37	1	110766127	110766127	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:110766127C>T	uc001dzh.2	+	2	1277	c.1220C>T	c.(1219-1221)GCC>GTC	p.A407V	KCNC4_uc001dzf.2_Missense_Mutation_p.A407V|KCNC4_uc009wfr.2_Missense_Mutation_p.A407V|KCNC4_uc001dzg.2_Missense_Mutation_p.A407V|KCNC4_uc001dzi.2_RNA	NM_004978	NP_004969	Q03721	KCNC4_HUMAN	Shaw-related voltage-gated potassium channel	407					synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3		all_cancers(81;9.88e-06)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0238)|all cancers(265;0.0693)|Epithelial(280;0.0748)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.135)		CGCATTGGGGCCAGGCCCTCC	0.582000												
OVGP1	5016	broad.mit.edu	37	1	111957202	111957202	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:111957202G>A	uc001eba.2	-	11	1977	c.1921C>T	c.(1921-1923)CGC>TGC	p.R641C	OVGP1_uc001eaz.2_Missense_Mutation_p.R603C|OVGP1_uc010owb.1_Missense_Mutation_p.R289C	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	641					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		GGAACAAAGCGGTTGTCAAAA	0.468000												
HIPK1	204851	broad.mit.edu	37	1	114512809	114512809	+	Silent	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:114512809C>A	uc001eem.2	+	14	3164	c.3003C>A	c.(3001-3003)ACC>ACA	p.T1001T	HIPK1_uc001eel.2_Silent_p.T1001T|HIPK1_uc001een.2_Silent_p.T1001T|HIPK1_uc001eeo.2_Silent_p.T627T|HIPK1_uc001eep.2_Silent_p.T607T|HIPK1_uc001eeq.2_Silent_p.T293T	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	1001	Interaction with TP53.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTGTAGCAACCCAGGCCTCAG	0.473000												
PDE4DIP	9659	broad.mit.edu	37	1	145075832	145075832	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:145075832G>A	uc001emh.2	-	1	248	c.31C>T	c.(31-33)CGC>TGC	p.R11C	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elo.2_Missense_Mutation_p.R11C|PDE4DIP_uc001emk.2_Missense_Mutation_p.R11C	NM_022359	NP_071754	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	Error:Variant_position_missing_in_Q5VU43_after_alignment					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CATCGGCGGCGGCAGCAGGAC	0.667000			T	PDGFRB	MPD							
S100A9	6280	broad.mit.edu	37	1	153330873	153330873	+	Silent	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:153330873A>G	uc001fbq.2	+	2	157	c.114A>G	c.(112-114)AAA>AAG	p.K38K		NM_002965	NP_002956	P06702	S10A9_HUMAN	S100 calcium-binding protein A9	38	EF-hand 1.				cell-cell signaling	cytoplasm|cytoskeleton|nucleus|plasma membrane	calcium ion binding|protein binding|signal transducer activity				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGGAATTCAAAGAGCTGGTGC	0.532000												
CHRNB2	1141	broad.mit.edu	37	1	154543684	154543684	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:154543684G>A	uc001ffg.2	+	5	649	c.385G>A	c.(385-387)GTG>ATG	p.V129M		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	129	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	CATGTACGAGGTGTCCTTCTA	0.547000												
PKLR	5313	broad.mit.edu	37	1	155265023	155265023	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:155265023G>A	uc001fkb.3	-	5	617	c.578C>T	c.(577-579)ACG>ATG	p.T193M	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Missense_Mutation_p.T162M	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1	193					endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	GTTCCCCCGCGTCCGGAACGC	0.632000												
C1orf104	284618	broad.mit.edu	37	1	155290689	155290689	+	Silent	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:155290689T>C	uc001fki.2	-	2	868	c.591A>G	c.(589-591)CTA>CTG	p.L197L	RAG1AP1_uc010pey.1_Intron|C1orf104_uc001fkh.1_Intron|RUSC1_uc001fkj.2_5'UTR|RUSC1_uc001fkk.2_5'UTR|RUSC1_uc009wqn.1_5'Flank|RUSC1_uc009wqo.1_5'Flank	NM_001039517	NP_001034606	Q66K80	RUAS1_HUMAN	hypothetical protein LOC284618	197											0	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;1.32e-10)|all cancers(21;3.51e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)			TAGGTTGTGCTAGTGCCCCTC	0.697000												
MEF2D	4209	broad.mit.edu	37	1	156437907	156437907	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:156437907A>G	uc001fpc.2	-	11	1822	c.1432T>C	c.(1432-1434)TAT>CAT	p.Y478H	MEF2D_uc001fpb.2_Missense_Mutation_p.Y471H|MEF2D_uc001fpd.2_Missense_Mutation_p.Y471H|MEF2D_uc001fpe.1_Missense_Mutation_p.Y478H|MEF2D_uc009wsa.2_RNA	NM_005920	NP_005911	Q14814	MEF2D_HUMAN	myocyte enhancer factor 2D	478					apoptosis|muscle organ development|nervous system development|positive regulation of transcription from RNA polymerase II promoter	nucleus	activating transcription factor binding|histone deacetylase binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCCGTCTCATAGGATCCCCCG	0.706000												
FCRL1	115350	broad.mit.edu	37	1	157771340	157771340	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:157771340A>C	uc001frg.2	-	6	1027	c.914T>G	c.(913-915)CTT>CGT	p.L305R	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Missense_Mutation_p.L305R|FCRL1_uc001fri.2_Intron|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	305	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TCCTGAGGTAAGATGATTGCT	0.507000												
OR10X1	128367	broad.mit.edu	37	1	158549530	158549530	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:158549530T>C	uc010pin.1	-	1	160	c.160A>G	c.(160-162)ACC>GCC	p.T54A		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	54	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.T54N(1)		ovary(1)	1	all_hematologic(112;0.0378)					CCTGCAAGGGTGAGAAGGTAG	0.453000												
SPTA1	6708	broad.mit.edu	37	1	158607915	158607915	+	Missense_Mutation	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:158607915T>G	uc001fst.1	-	36	5296	c.5097A>C	c.(5095-5097)CAA>CAC	p.Q1699H		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1699	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTGCCAATTCTTGGACATTCA	0.428000												
OR6N1	128372	broad.mit.edu	37	1	158735638	158735638	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:158735638A>C	uc010piq.1	-	1	835	c.835T>G	c.(835-837)TCA>GCA	p.S279A		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GTGAGCACTGAGTAGACCACT	0.512000												
ATF6	22926	broad.mit.edu	37	1	161833061	161833061	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:161833061C>T	uc001gbr.2	+	14	1745	c.1678C>T	c.(1678-1680)CGC>TGC	p.R560C	ATF6_uc001gbq.1_Missense_Mutation_p.R560C	NM_007348	NP_031374	P18850	ATF6A_HUMAN	activating transcription factor 6	560	Lumenal (Potential).				positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response|protein folding	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|skin(1)	3	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.00953)			TGAAGCCATCCGCAGAAGGGG	0.299000												
DNM3	26052	broad.mit.edu	37	1	172222791	172222791	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:172222791C>T	uc001gie.2	+	15	1914	c.1738C>T	c.(1738-1740)CAC>TAC	p.H580Y	DNM3_uc009wwb.2_Missense_Mutation_p.H580Y|DNM3_uc001gif.2_Missense_Mutation_p.H580Y	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	590	PH.				endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						GTCTAGCAAGCACATCTTTGC	0.358000												
FASLG	356	broad.mit.edu	37	1	172628524	172628524	+	Silent	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:172628524A>G	uc001gis.2	+	1	340	c.183A>G	c.(181-183)CCA>CCG	p.P61P	FASLG_uc001git.2_Silent_p.P61P	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	61	Pro-rich.|Poly-Pro.|Cytoplasmic (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						cgccgccgccaccactgcctc	0.333000												
DARS2	55157	broad.mit.edu	37	1	173822937	173822937	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:173822937G>A	uc001gjh.1	+	15	1978	c.1568G>A	c.(1567-1569)CGT>CAT	p.R523H		NM_018122	NP_060592	Q6PI48	SYDM_HUMAN	aspartyl-tRNA synthetase 2, mitochondrial	523					tRNA aminoacylation for protein translation	mitochondrial matrix|nucleus	aspartate-tRNA ligase activity|ATP binding|nucleic acid binding			central_nervous_system(2)	2					L-Aspartic Acid(DB00128)	TTCTAGGCCCGTAGCCAACAC	0.388000												
HMCN1	83872	broad.mit.edu	37	1	186114998	186114998	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:186114998C>A	uc001grq.1	+	93	14780	c.14551C>A	c.(14551-14553)CGT>AGT	p.R4851S	HMCN1_uc001grs.1_Missense_Mutation_p.R420S	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4851	TSP type-1 6.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TAAAGGTGGCCGTCCCTGTCC	0.502000												
FAM5C	339479	broad.mit.edu	37	1	190067922	190067922	+	Missense_Mutation	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:190067922T>G	uc001gse.1	-	8	1759	c.1527A>C	c.(1525-1527)GAA>GAC	p.E509D	FAM5C_uc010pot.1_Missense_Mutation_p.E407D	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	509						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TGGCATGGACTTCTATTCGTC	0.468000												
CFHR3	10878	broad.mit.edu	37	1	196748981	196748981	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:196748981A>G	uc001gtl.2	+	3	395	c.308A>G	c.(307-309)AAG>AGG	p.K103R	CFHR3_uc001gtk.2_Missense_Mutation_p.K103R|CFHR3_uc010poy.1_Missense_Mutation_p.K103R|CFHR1_uc001gtm.2_Intron	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	103	Sushi 2.					extracellular space					0						TATGGAAGAAAGTTTGTACAG	0.368000												
NR5A2	2494	broad.mit.edu	37	1	200143338	200143338	+	Nonstop_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:200143338A>C	uc001gvb.2	+	8	1832	c.1626A>C	c.(1624-1626)TAA>TAC	p.*542Y	NR5A2_uc001gvc.2_Nonstop_Mutation_p.*496Y|NR5A2_uc009wzh.2_Nonstop_Mutation_p.*502Y|NR5A2_uc010pph.1_Nonstop_Mutation_p.*470Y	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	542					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					AAAGAGCATAAGTTACAACCC	0.448000												
IGFN1	91156	broad.mit.edu	37	1	201196203	201196203	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:201196203G>A	uc001gwc.2	+	12	3232	c.2460G>A	c.(2458-2460)GTG>GTA	p.V820V	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						ACCCCGCGGTGTACAGCACTG	0.657000												
CR1	1378	broad.mit.edu	37	1	207679281	207679281	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:207679281G>T	uc001hfy.2	+	2	294	c.154G>T	c.(154-156)GCC>TCC	p.A52S	CR1_uc009xcl.1_Missense_Mutation_p.A52S|CR1_uc001hfx.2_Missense_Mutation_p.A52S|CR1_uc010psg.1_Missense_Mutation_p.A52S|CR1_uc009xcj.1_Missense_Mutation_p.A52S|CR1_uc009xck.1_Missense_Mutation_p.A52S	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	52	Sushi 1.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GCTTCCATTTGCCAGGCCTAC	0.398000												
TAF5L	27097	broad.mit.edu	37	1	229738209	229738209	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:229738209G>A	uc001htq.2	-	4	871	c.705C>T	c.(703-705)AAC>AAT	p.N235N	TAF5L_uc001htr.2_Silent_p.N235N	NM_014409	NP_055224	O75529	TAF5L_HUMAN	PCAF associated factor 65 beta isoform a	235					histone H3 acetylation|transcription from RNA polymerase II promoter	STAGA complex|transcription factor TFTC complex	sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	Breast(184;0.193)|Ovarian(103;0.249)	Prostate(94;0.167)				GGGCAGCCTCGTTCTGCAGAA	0.552000												
TOMM20	9804	broad.mit.edu	37	1	235292003	235292003	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:235292003C>T	uc001hwl.2	-	1	254	c.28G>A	c.(28-30)GCC>ACC	p.A10T	SNORA14B_uc001hwm.1_5'Flank	NM_014765	NP_055580	Q15388	TOM20_HUMAN	translocase of outer mitochondrial membrane 20	10	Helical; (Potential).				protein targeting to mitochondrion	integral to membrane|mitochondrial outer membrane translocase complex	P-P-bond-hydrolysis-driven protein transmembrane transporter activity|unfolded protein binding				0	Ovarian(103;0.0398)	all_cancers(173;0.177)|Prostate(94;0.0166)	OV - Ovarian serous cystadenocarcinoma(106;6.33e-05)|Epithelial(3;8.26e-05)			CATACACCGGCGGCGATGGCG	0.602000												
MTR	4548	broad.mit.edu	37	1	236966834	236966834	+	Silent	SNP	C	C	T	rs144151735	by1000genomes	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:236966834C>T	uc001hyi.3	+	2	564	c.141C>T	c.(139-141)AAC>AAT	p.N47N	MTR_uc010pxv.1_Intron|MTR_uc010pxw.1_Translation_Start_Site|MTR_uc010pxx.1_Silent_p.N47N|MTR_uc010pxy.1_Silent_p.N47N	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	47	Hcy-binding.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	AGAAGCTAAACGAAGAACACT	0.463000												
RYR2	6262	broad.mit.edu	37	1	237947304	237947304	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:237947304G>A	uc001hyl.1	+	90	12412	c.12292G>A	c.(12292-12294)GTC>ATC	p.V4098I	RYR2_uc010pya.1_Missense_Mutation_p.V513I	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4098					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CGGCTTCAACGTCGCCGTCCT	0.498000												
HNRNPU	3192	broad.mit.edu	37	1	245017759	245017759	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:245017759T>C	uc001iaz.1	-	14	2689	c.2471A>G	c.(2470-2472)TAT>TGT	p.Y824C	HNRNPU_uc001iaw.1_RNA|HNRNPU_uc001iax.1_RNA|HNRNPU_uc001iay.1_Missense_Mutation_p.Y548C|HNRNPU_uc001iba.1_Missense_Mutation_p.Y805C	NM_031844	NP_114032	Q00839	HNRPU_HUMAN	heterogeneous nuclear ribonucleoprotein U	824	Gly-rich.				CRD-mediated mRNA stabilization	catalytic step 2 spliceosome|cell surface|CRD-mediated mRNA stability complex|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	ATP binding|DNA binding|protein binding|RNA binding				0	all_cancers(71;6.97e-06)|all_epithelial(71;0.000104)|all_neural(11;0.0269)|Breast(184;0.0545)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0989)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.00868)			TATTCAATAATATCCTTGGTG	0.333000												
OR11L1	391189	broad.mit.edu	37	1	248004739	248004739	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:248004739T>C	uc001idn.1	-	1	460	c.460A>G	c.(460-462)AGC>GGC	p.S154G		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AAGCCTGTGCTGACCCCTGTG	0.577000												
OR2M3	127062	broad.mit.edu	37	1	248366510	248366510	+	Silent	SNP	C	C	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:248366510C>G	uc010pzg.1	+	1	141	c.141C>G	c.(139-141)CTC>CTG	p.L47L		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TCATGGTTCTCCTCATCTACC	0.547000												
SH3BP5L	80851	broad.mit.edu	37	1	249107334	249107334	+	Silent	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:249107334G>T	uc001iew.1	-	6	1117	c.565C>A	c.(565-567)CGA>AGA	p.R189R	SH3BP5L_uc010pzp.1_Silent_p.R82R|SH3BP5L_uc010pzq.1_Silent_p.R157R|SH3BP5L_uc001iev.1_Silent_p.R70R	NM_030645	NP_085148	Q7L8J4	3BP5L_HUMAN	SH3-binding domain protein 5-like	189	Potential.										0	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.19)	OV - Ovarian serous cystadenocarcinoma(106;0.00805)			CGCTCACCTCGAAGCCGCTCT	0.637000												
TUBAL3	79861	broad.mit.edu	37	10	5435603	5435603	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:5435603G>A	uc001ihy.2	-	4	1258	c.1218C>T	c.(1216-1218)TAC>TAT	p.Y406Y	TUBAL3_uc001ihz.2_Silent_p.Y366Y	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	406					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						CTCTCTTGGCGTACATGAGGT	0.582000												
SFMBT2	57713	broad.mit.edu	37	10	7269899	7269899	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:7269899C>A	uc009xio.1	-	10	1212	c.1121G>T	c.(1120-1122)GGT>GTT	p.G374V	SFMBT2_uc001ijn.1_Missense_Mutation_p.G374V|SFMBT2_uc010qay.1_Missense_Mutation_p.G374V	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	374					regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						GCCAGAGTAACCTGGGAATGA	0.473000												
PLXDC2	84898	broad.mit.edu	37	10	20290822	20290822	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:20290822G>A	uc001iqg.1	+	2	868	c.231G>A	c.(229-231)ACG>ACA	p.T77T	PLXDC2_uc001iqh.1_Silent_p.T77T	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	77	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						CGGTAGACACGAACCGAGCAA	0.537000												
KIAA1217	56243	broad.mit.edu	37	10	24832909	24832909	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:24832909G>T	uc001iru.3	+	19	5113	c.4710G>T	c.(4708-4710)AAG>AAT	p.K1570N	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Intron|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Intron|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Missense_Mutation_p.K1253N|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Missense_Mutation_p.K406N	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1570					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AAAGCCCCAAGAAAAAGTTTA	0.468000												
C10orf71	118461	broad.mit.edu	37	10	50532451	50532451	+	Nonsense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:50532451G>T	uc010qgp.1	+	3	2200	c.1861G>T	c.(1861-1863)GGA>TGA	p.G621*		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	621											0						GGAGGTGGAAGGAGAGTTGGA	0.552000												
CSTF2T	23283	broad.mit.edu	37	10	53457958	53457958	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:53457958C>A	uc001jjp.2	-	1	1398	c.1352G>T	c.(1351-1353)AGG>ATG	p.R451M	PRKG1_uc001jjm.2_Intron|PRKG1_uc001jjn.2_Intron|PRKG1_uc001jjo.2_Intron	NM_015235	NP_056050	Q9H0L4	CSTFT_HUMAN	cleavage stimulation factor, 3' pre-RNA, subunit	451	Gly-rich.|1-7; approximate.|9 X 5 AA tandem repeats of M-E-T-R-[AG].				mRNA processing	nucleus	nucleotide binding|RNA binding			ovary(1)	1				COAD - Colon adenocarcinoma(2;0.00736)|Colorectal(2;0.00898)|all cancers(4;0.0188)|GBM - Glioblastoma multiforme(4;0.0778)|Epithelial(53;0.122)		ATCCATGCCCCTTGCTTCCAT	0.532000												
ANK3	288	broad.mit.edu	37	10	61932125	61932125	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:61932125C>T	uc001jky.2	-	21	2611	c.2419G>A	c.(2419-2421)GGC>AGC	p.G807S	ANK3_uc001jkx.2_5'UTR|ANK3_uc010qih.1_Missense_Mutation_p.G790S|ANK3_uc001jkz.3_Missense_Mutation_p.G801S|ANK3_uc001jlb.1_Missense_Mutation_p.G336S|ANK3_uc001jlc.1_Missense_Mutation_p.G468S	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	807	ANK 23.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GAGATGTAGCCGAGGCGCCGG	0.478000												
HK1	3098	broad.mit.edu	37	10	71139813	71139813	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:71139813G>A	uc001jpl.3	+	9	1328	c.1227G>A	c.(1225-1227)ACG>ACA	p.T409T	HK1_uc001jpg.3_Silent_p.T397T|HK1_uc001jph.3_Silent_p.T413T|HK1_uc001jpi.3_Silent_p.T413T|HK1_uc001jpj.3_Silent_p.T444T|HK1_uc001jpk.3_Silent_p.T408T|HK1_uc009xqd.2_Silent_p.T287T	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	409	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						TGCGGACCACGGTTGGTGTCG	0.567000												
CAMK2G	818	broad.mit.edu	37	10	75574931	75574931	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:75574931C>T	uc001jvm.1	-	20	1632	c.1513G>A	c.(1513-1515)GCG>ACG	p.A505T	CAMK2G_uc001jvo.1_Missense_Mutation_p.A476T|CAMK2G_uc001jvq.1_Missense_Mutation_p.A453T|CAMK2G_uc001jvr.1_Missense_Mutation_p.A444T|CAMK2G_uc001jvp.1_Missense_Mutation_p.A467T|CAMK2G_uc001jvs.1_Missense_Mutation_p.A488T|CAMK2G_uc001jvt.1_RNA|CAMK2G_uc001jvu.1_Missense_Mutation_p.A445T|CAMK2G_uc009xrp.1_Missense_Mutation_p.A94T	NM_172171	NP_751911	Q13555	KCC2G_HUMAN	calcium/calmodulin-dependent protein kinase II	507					insulin secretion|interferon-gamma-mediated signaling pathway|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding|calmodulin-dependent protein kinase activity			lung(1)|stomach(1)	2	Prostate(51;0.0112)					GCGATGCACGCTGCGTCCTCC	0.622000												
POLR3A	11128	broad.mit.edu	37	10	79789145	79789145	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:79789145C>T	uc001jzn.2	-	1	115	c.21G>A	c.(19-21)CGG>CGA	p.R7R		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	7					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			CATCCGTCTCCCGGAACTGCT	0.607000											OREG0020298	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
GHITM	27069	broad.mit.edu	37	10	85901266	85901266	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:85901266G>A	uc001kcs.1	+	2	214	c.10G>A	c.(10-12)GCA>ACA	p.A4T	GHITM_uc010qma.1_5'UTR|GHITM_uc010qmb.1_5'Flank	NM_014394	NP_055209	Q9H3K2	GHITM_HUMAN	growth hormone inducible transmembrane protein	4				A -> V (in Ref. 4; CAB66648).	apoptosis	integral to membrane|mitochondrial inner membrane					0						CATGTTGGCTGCAAGGCTGGT	0.458000												
LRIT1	26103	broad.mit.edu	37	10	85992427	85992427	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:85992427G>A	uc001kcz.1	-	4	1150	c.1128C>T	c.(1126-1128)AAC>AAT	p.N376N		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	376	Lumenal (Potential).					integral to endoplasmic reticulum membrane					0						CCACCAGCTTGTTGTTGTAAG	0.597000												
HPSE2	60495	broad.mit.edu	37	10	100904111	100904111	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:100904111T>C	uc001kpn.1	-	3	554	c.494A>G	c.(493-495)AAG>AGG	p.K165R	HPSE2_uc009xwc.1_Missense_Mutation_p.K155R|HPSE2_uc001kpo.1_Missense_Mutation_p.K155R|HPSE2_uc009xwd.1_Intron	NM_021828	NP_068600	Q8WWQ2	HPSE2_HUMAN	heparanase 2	165					carbohydrate metabolic process	intracellular|membrane	cation binding|heparanase activity			ovary(1)	1				Epithelial(162;1.8e-09)|all cancers(201;4.72e-07)		CTGGGCAATCTTGCAGCCTTT	0.408000												
GOT1	2805	broad.mit.edu	37	10	101180555	101180555	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:101180555G>A	uc001kpr.2	-	2	334	c.126C>T	c.(124-126)CGC>CGT	p.R42R	GOT1_uc009xwh.2_RNA|GOT1_uc009xwi.2_Silent_p.R42R|GOT1_uc001kpq.1_5'UTR	NM_002079	NP_002070	P17174	AATC_HUMAN	aspartate aminotransferase 1	42					aspartate catabolic process|cellular response to insulin stimulus|gluconeogenesis|response to glucocorticoid stimulus	cytosol	L-aspartate:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding				0		Ovarian(717;0.028)|Colorectal(252;0.234)		Epithelial(162;4.76e-10)|all cancers(201;3.84e-08)	L-Aspartic Acid(DB00128)|L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	AGTCATCCGTGCGATATGCTG	0.458000												
FBXL15	79176	broad.mit.edu	37	10	104182697	104182697	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:104182697G>T	uc001kvk.2	+	4	2166	c.850G>T	c.(850-852)GTG>TTG	p.V284L	FBXL15_uc001kvl.1_Missense_Mutation_p.V371L	NM_024326	NP_077302	Q9H469	FXL15_HUMAN	F-box and leucine-rich repeat protein 15	284					bone mineralization|dorsal/ventral pattern formation|G2/M transition of mitotic cell cycle|positive regulation of BMP signaling pathway|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	protein binding			kidney(1)	1		Colorectal(252;0.207)		Epithelial(162;1.19e-08)|all cancers(201;2.65e-07)		CCAGGCCCTGGTGCTGCTGCA	0.677000											OREG0020479	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
SORCS1	114815	broad.mit.edu	37	10	108469079	108469079	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:108469079G>A	uc001kym.2	-	7	1053	c.1045C>T	c.(1045-1047)CGA>TGA	p.R349*	SORCS1_uc001kyl.2_Nonsense_Mutation_p.R349*|SORCS1_uc009xxs.2_Nonsense_Mutation_p.R349*|SORCS1_uc001kyn.1_Nonsense_Mutation_p.R349*|SORCS1_uc001kyo.2_Nonsense_Mutation_p.R349*	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	349	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		TTCTGCATTCGGCAAGTTAGA	0.393000												
PNLIPRP3	119548	broad.mit.edu	37	10	118236283	118236283	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:118236283A>G	uc001lcl.3	+	11	1393	c.1292A>G	c.(1291-1293)AAG>AGG	p.K431R		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	431	PLAT.				lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		TCTCAGAATAAGTTGGGAGCA	0.303000												
EMX2	2018	broad.mit.edu	37	10	119307706	119307706	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:119307706C>T	uc001ldh.3	+	3	1545	c.722C>T	c.(721-723)GCG>GTG	p.A241V	EMX2_uc001ldi.3_3'UTR	NM_004098	NP_004089	Q04743	EMX2_HUMAN	empty spiracles homeobox 2 isoform 1	241						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		Colorectal(252;0.109)|Lung NSC(174;0.179)|all_lung(145;0.22)		all cancers(201;0.0133)		ACCAAGCAGGCGAGTCCGGAG	0.478000												
TUBGCP2	10844	broad.mit.edu	37	10	135096606	135096606	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:135096606G>A	uc001lmg.1	-	15	2622	c.2265C>T	c.(2263-2265)TGC>TGT	p.C755C	TUBGCP2_uc001lmf.1_Silent_p.C348C|TUBGCP2_uc010qvc.1_Silent_p.C783C|TUBGCP2_uc009ybk.1_Silent_p.C778C|TUBGCP2_uc010qvd.1_Silent_p.C625C|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	755					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		TGAACATGACGCACACAGACA	0.627000												
ABCC8	6833	broad.mit.edu	37	11	17417236	17417236	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:17417236C>T	uc001mnc.2	-	35	4354	c.4228G>A	c.(4228-4230)GCC>ACC	p.A1410T		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1410	Cytoplasmic (By similarity).|ABC transporter 2.			A -> R (in Ref. 2; AAB36699/AAB36700).	carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GGCAGTTTGGCGATGTCAATG	0.632000												
IGSF22	283284	broad.mit.edu	37	11	18736137	18736137	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:18736137G>A	uc009yht.2	-	12	1756	c.1566C>T	c.(1564-1566)GAC>GAT	p.D522D	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	522										ovary(4)|large_intestine(2)|kidney(1)	7						CCGCGTGCACGTCGGACATCC	0.602000												
GANAB	23193	broad.mit.edu	37	11	62397125	62397125	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:62397125C>T	uc001nub.2	-	15	1802	c.1769G>A	c.(1768-1770)CGC>CAC	p.R590H	GANAB_uc001ntz.2_5'Flank|GANAB_uc001nua.2_Missense_Mutation_p.R612H|GANAB_uc001nuc.2_Missense_Mutation_p.R493H|GANAB_uc010rma.1_Missense_Mutation_p.R498H|GANAB_uc010rmb.1_Missense_Mutation_p.R476H	NM_198334	NP_938148	Q14697	GANAB_HUMAN	neutral alpha-glucosidase AB isoform 2	590					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|Golgi apparatus|melanosome	carbohydrate binding|glucan 1,3-alpha-glucosidase activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5						GCCCCCAGAGCGCTGTCTCAG	0.587000												
NXF1	10482	broad.mit.edu	37	11	62567923	62567923	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:62567923C>T	uc001nvf.1	-	10	1078	c.942G>A	c.(940-942)GGG>GGA	p.G314G	NXF1_uc001nvg.1_Silent_p.G314G|NXF1_uc009yog.1_Silent_p.G357G|NXF1_uc010rmh.1_Silent_p.G177G	NM_006362	NP_006353	Q9UBU9	NXF1_HUMAN	nuclear RNA export factor 1 isoform 1	314	LRR 2.|Interaction with THOC4.				gene expression|interspecies interaction between organisms	cytosol|nuclear speck	nucleotide binding|protein binding			skin(3)	3						CTAGCTTCAGCCCCTTTATCT	0.547000												
KCNK4	50801	broad.mit.edu	37	11	64064727	64064727	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:64064727C>T	uc001nzj.1	+	4	773	c.450C>T	c.(448-450)ATC>ATT	p.I150I	KCNK4_uc009ypl.1_Missense_Mutation_p.S123L|KCNK4_uc001nzk.1_Missense_Mutation_p.S84L|KCNK4_uc010rnk.1_5'UTR|KCNK4_uc001nzl.1_Missense_Mutation_p.S84L|KCNK4_uc001nzm.3_RNA|KCNK4_uc001nzn.1_Silent_p.I150I|KCNK4_uc001nzo.2_Silent_p.I150I|KCNK4_uc001nzp.1_5'UTR	NM_033310	NP_201567	Q9NYG8	KCNK4_HUMAN	TRAAK	150	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity				0						GCCATGGCATCGGTCACATTG	0.627000												
C11orf85	283129	broad.mit.edu	37	11	64714903	64714903	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:64714903A>G	uc001ocb.1	-	7	490	c.416T>C	c.(415-417)ATG>ACG	p.M139T	C11orf85_uc001occ.1_RNA|C11orf85_uc001ocd.1_Missense_Mutation_p.M61T	NM_001037225	NP_001032302	Q3KP22	CK085_HUMAN	hypothetical protein LOC283129	139											0						TCGTTTCCTCATCACAGCTCC	0.522000												
GAL3ST3	89792	broad.mit.edu	37	11	65810630	65810630	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:65810630C>T	uc001ogv.2	-	2	804	c.644G>A	c.(643-645)CGC>CAC	p.R215H	GAL3ST3_uc001ogw.2_Missense_Mutation_p.R215H	NM_033036	NP_149025	Q96A11	G3ST3_HUMAN	galactose-3-O-sulfotransferase 3	215	Lumenal (Potential).				monosaccharide metabolic process|oligosaccharide metabolic process|poly-N-acetyllactosamine metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|carbohydrate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(1)	1						GCGCGGGCTGCGCTCATTGTC	0.667000												
ARAP1	116985	broad.mit.edu	37	11	72410591	72410591	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:72410591C>A	uc001osu.2	-	17	2498	c.2309G>T	c.(2308-2310)AGC>ATC	p.S770I	ARAP1_uc001osv.2_Missense_Mutation_p.S770I|ARAP1_uc001osr.2_Missense_Mutation_p.S530I|ARAP1_uc001oss.2_Missense_Mutation_p.S525I|ARAP1_uc009yth.2_Missense_Mutation_p.S464I|ARAP1_uc010rre.1_Missense_Mutation_p.S525I|ARAP1_uc001osw.1_Missense_Mutation_p.S58I	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	770	PH 3.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						CCAGCGCCGGCTGAACTCTGG	0.622000												
SERPINH1	871	broad.mit.edu	37	11	75282887	75282887	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:75282887G>A	uc001owr.2	+	5	1245	c.1016G>A	c.(1015-1017)CGC>CAC	p.R339H	SERPINH1_uc009yug.2_Missense_Mutation_p.R339H|SERPINH1_uc001ows.2_Missense_Mutation_p.R339H|SERPINH1_uc001owt.2_Missense_Mutation_p.R122H	NM_001235	NP_001226	P50454	SERPH_HUMAN	serine (or cysteine) proteinase inhibitor, clade	339					regulation of proteolysis|response to unfolded protein	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	collagen binding|serine-type endopeptidase inhibitor activity			ovary(2)	2	Ovarian(111;0.11)					GACTTGTCACGCATGTCAGGC	0.587000												
CAPN5	726	broad.mit.edu	37	11	76796090	76796090	+	Missense_Mutation	SNP	G	G	A	rs142613341		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:76796090G>A	uc001oxx.2	+	2	343	c.158G>A	c.(157-159)CGA>CAA	p.R53Q	CAPN5_uc009yup.2_Missense_Mutation_p.R53Q|CAPN5_uc009yuq.2_Missense_Mutation_p.R89Q|CAPN5_uc001oxy.2_Missense_Mutation_p.R93Q	NM_004055	NP_004046	O15484	CAN5_HUMAN	calpain 5	53	Calpain catalytic.				proteolysis|signal transduction	intracellular	calcium-dependent cysteine-type endopeptidase activity				0						AGGTGGAAGCGACCCAAGGTC	0.687000												
C11orf82	220042	broad.mit.edu	37	11	82643006	82643006	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:82643006A>G	uc001ozt.2	+	6	870	c.626A>G	c.(625-627)CAC>CGC	p.H209R	C11orf82_uc010rsr.1_5'UTR|C11orf82_uc010rss.1_5'UTR|C11orf82_uc009yvd.2_Intron	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	209					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						GCTTTAGATCACTCAAATAGT	0.383000												
FAM76B	143684	broad.mit.edu	37	11	95520842	95520842	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:95520842G>A	uc001pfn.2	-	3	465	c.153C>T	c.(151-153)AGC>AGT	p.S51S	CEP57_uc001pfo.1_5'Flank|CEP57_uc010ruh.1_5'Flank|CEP57_uc010rui.1_5'Flank|CEP57_uc009ywn.1_5'Flank|CEP57_uc001pfp.1_5'Flank|CEP57_uc001pfq.1_5'Flank|CEP57_uc001pfr.1_5'Flank|FAM76B_uc001pfm.2_RNA	NM_144664	NP_653265	Q5HYJ3	FA76B_HUMAN	hypothetical protein LOC143684	51											0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TGTTAGTTTTGCTGAAAAATA	0.279000												
CNTN5	53942	broad.mit.edu	37	11	100168355	100168355	+	Splice_Site	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:100168355A>C	uc001pga.2	+	19	2654	c.2315_splice	c.e19-2	p.V772_splice	CNTN5_uc001pfz.2_Splice_Site_p.V772_splice|CNTN5_uc001pgb.2_Splice_Site_p.V698_splice|CNTN5_uc010ruk.1_Splice_Site_p.V43_splice	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long						cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TTTTATCCACAGTTCCGAAGA	0.428000												
MMP3	4314	broad.mit.edu	37	11	102711277	102711277	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:102711277C>A	uc001phj.1	-	5	738	c.673G>T	c.(673-675)GGT>TGT	p.G225C		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	225					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	TGAAAGAGACCCAGGGAGTGG	0.403000												
RAB39	54734	broad.mit.edu	37	11	107832989	107832989	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:107832989G>A	uc001pjt.2	+	2	563	c.545G>A	c.(544-546)GGA>GAA	p.G182E		NM_017516	NP_059986	Q14964	RB39A_HUMAN	RAB39, member RAS oncogene family	182					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0				BRCA - Breast invasive adenocarcinoma(274;3.04e-05)|Epithelial(105;8.56e-05)|all cancers(92;0.00179)		ATTAAAAAGGGAGAAATTTGT	0.383000												
SDHD	6392	broad.mit.edu	37	11	111965589	111965589	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:111965589G>T	uc001pmz.2	+	4	436	c.375G>T	c.(373-375)AAG>AAT	p.K125N		NM_003002	NP_002993	O14521	DHSD_HUMAN	succinate dehydrogenase complex, subunit D	125	Helical; (By similarity).				respiratory electron transport chain|transport|tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain complex II	electron carrier activity|heme binding|succinate dehydrogenase activity|ubiquinone binding				0		all_cancers(61;5.7e-14)|all_epithelial(67;3.4e-08)|Melanoma(852;8.81e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;6.13e-07)|BRCA - Breast invasive adenocarcinoma(274;6.17e-07)|all cancers(92;1.05e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0515)	Succinic acid(DB00139)	AAGCTGCCAAGGCAGGGCTTT	0.438000			Mis|N|F|S			paraganglioma|pheochromocytoma			Familial_Paragangliomas|Carney-Stratakis_syndrome|Cowden_syndrome			
TTC12	54970	broad.mit.edu	37	11	113222930	113222930	+	Splice_Site	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:113222930G>A	uc001pnu.2	+	16	1551	c.1446_splice	c.e16+1	p.L482_splice	TTC12_uc001pnv.2_Splice_Site_p.L488_splice|TTC12_uc001pnw.2_Splice_Site|TTC12_uc001pnx.2_Splice_Site_p.L332_splice	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12								binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		GAGCCTCCTGGTATGTTAGCT	0.473000												
FAM55D	54827	broad.mit.edu	37	11	114442059	114442059	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:114442059C>A	uc001ppc.2	-	6	1417	c.1236G>T	c.(1234-1236)GAG>GAT	p.E412D	FAM55D_uc001ppd.2_Missense_Mutation_p.E128D	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	412						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		GGTACTCCATCTCTTTGACTG	0.438000												
SIK3	23387	broad.mit.edu	37	11	116717249	116717249	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:116717249C>A	uc001ppy.2	-	23	3691	c.3655G>T	c.(3655-3657)GGT>TGT	p.G1219C	SIK3_uc001ppz.2_Missense_Mutation_p.G1058C|SIK3_uc001pqa.2_Missense_Mutation_p.G1159C|SIK3_uc001ppw.2_Missense_Mutation_p.G576C|SIK3_uc001ppx.2_Missense_Mutation_p.G597C	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	1219						cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						TGCTCATGACCTCCCAGGCTT	0.522000												
MLL	4297	broad.mit.edu	37	11	118392022	118392022	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:118392022G>A	uc001pta.2	+	35	11547	c.11524G>A	c.(11524-11526)GGT>AGT	p.G3842S	MLL_uc001ptb.2_Missense_Mutation_p.G3845S	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	3842	SET.				apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CCATGGCCGGGGTCTTTTCTG	0.453000			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL							
GRIK4	2900	broad.mit.edu	37	11	120837915	120837915	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:120837915C>T	uc001pxn.2	+	19	2565	c.2278C>T	c.(2278-2280)CGG>TGG	p.R760W	GRIK4_uc009zaw.1_Missense_Mutation_p.R760W|GRIK4_uc009zax.1_Missense_Mutation_p.R760W	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	760	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	CTCGGTTTTCCGGGACGAGTT	0.607000												
KDM5A	5927	broad.mit.edu	37	12	438150	438150	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:438150G>A	uc001qif.1	-	14	2182	c.1819C>T	c.(1819-1821)CGC>TGC	p.R607C	KDM5A_uc001qie.1_Missense_Mutation_p.R607C|KDM5A_uc010sdn.1_Missense_Mutation_p.R566C|KDM5A_uc010sdo.1_Missense_Mutation_p.R226C	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	607					chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						ACACAGTGGCGCCTTAGGCGT	0.438000			T 	NUP98	AML							
EFCAB4B	84766	broad.mit.edu	37	12	3806150	3806150	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:3806150C>T	uc001qmj.2	-	4	588	c.16G>A	c.(16-18)GGG>AGG	p.G6R	EFCAB4B_uc010sen.1_Missense_Mutation_p.G6R|EFCAB4B_uc010seo.1_Missense_Mutation_p.G6R	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	6					activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			ACTACCCTCCCGTCAGGGGCA	0.567000												
C12orf5	57103	broad.mit.edu	37	12	4460533	4460533	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:4460533C>T	uc001qmp.2	+	5	450	c.371C>T	c.(370-372)ACG>ATG	p.T124M		NM_020375	NP_065108	Q9NQ88	TIGAR_HUMAN	TP53-induced glycolysis and apoptosis regulator	124						intracellular	fructose-2,6-bisphosphate 2-phosphatase activity			skin(1)	1			all cancers(3;1.15e-07)|Colorectal(7;0.00165)|OV - Ovarian serous cystadenocarcinoma(31;0.00596)|COAD - Colon adenocarcinoma(12;0.0229)|GBM - Glioblastoma multiforme(3;0.0266)|STAD - Stomach adenocarcinoma(119;0.206)			GGAGGAGAGACGCTGGACCAG	0.493000												
KCNA5	3741	broad.mit.edu	37	12	5154292	5154292	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:5154292G>A	uc001qni.2	+	1	1208	c.979G>A	c.(979-981)GTG>ATG	p.V327M		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	327	Helical; Name=Segment S2; (Potential).					Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						CTTCTTCATCGTGGAGACCAC	0.667000												
CLEC4D	338339	broad.mit.edu	37	12	8670815	8670815	+	Missense_Mutation	SNP	G	G	T	rs138087450	byFrequency	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:8670815G>T	uc001qun.2	+	3	370	c.177G>T	c.(175-177)GAG>GAT	p.E59D		NM_080387	NP_525126	Q8WXI8	CLC4D_HUMAN	C-type lectin domain family 4, member D	59	Extracellular (Potential).				innate immune response	integral to membrane	sugar binding				0	Lung SC(5;0.184)					ACAAGTTAGAGCACCATGCAA	0.368000												
SOX5	6660	broad.mit.edu	37	12	23689453	23689453	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:23689453C>T	uc001rfw.2	-	14	2024	c.1922G>A	c.(1921-1923)CGC>CAC	p.R641H	SOX5_uc001rfx.2_Missense_Mutation_p.R628H|SOX5_uc001rfy.2_Missense_Mutation_p.R520H|SOX5_uc001rfv.2_Missense_Mutation_p.R255H|SOX5_uc010siv.1_Missense_Mutation_p.R628H|SOX5_uc010siw.1_RNA	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	641					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						TTCACCAATGCGCAGCTTTTT	0.517000												
SOAT2	8435	broad.mit.edu	37	12	53499020	53499020	+	Silent	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:53499020T>C	uc001sbv.2	+	3	356	c.268T>C	c.(268-270)TTG>CTG	p.L90L	SOAT2_uc009zms.2_RNA	NM_003578	NP_003569	O75908	SOAT2_HUMAN	acyl-CoA:cholesterol acyltransferase 2	90					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|macrophage derived foam cell differentiation|very-low-density lipoprotein particle assembly	brush border|endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			ovary(1)	1						CCCAGGTTCCTTGAGCAGGTG	0.572000												
NCKAP1L	3071	broad.mit.edu	37	12	54910752	54910752	+	Silent	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:54910752T>C	uc001sgc.3	+	11	1150	c.1071T>C	c.(1069-1071)GAT>GAC	p.D357D	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Silent_p.D307D	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	357					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TGTTGGCTGATGAACCGGGAC	0.507000												
OR6C75	390323	broad.mit.edu	37	12	55759657	55759657	+	Missense_Mutation	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:55759657T>G	uc010spk.1	+	1	763	c.763T>G	c.(763-765)TTC>GTC	p.F255V		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						TAGCTGTATCTTCATGTACAT	0.408000												
METTL7B	196410	broad.mit.edu	37	12	56075989	56075989	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:56075989C>T	uc010spr.1	+	1	660	c.451C>T	c.(451-453)CAG>TAG	p.Q151*		NM_152637	NP_689850	Q6UX53	MET7B_HUMAN	methyltransferase like 7B precursor	151							methyltransferase activity				0						GTGCTCTGTGCAGAGCCCAAG	0.602000												
LRP1	4035	broad.mit.edu	37	12	57574523	57574523	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:57574523C>T	uc001snd.2	+	33	5926	c.5460C>T	c.(5458-5460)TCC>TCT	p.S1820S		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1820	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GCTCGGGCTCCGTGGTCCTTC	0.647000												
INHBC	3626	broad.mit.edu	37	12	57843601	57843601	+	Silent	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:57843601A>C	uc001snv.1	+	2	982	c.855A>C	c.(853-855)GCA>GCC	p.A285A		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	285					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						TACACATAGCAGGCATGCCTG	0.552000												
YEATS4	8089	broad.mit.edu	37	12	69753780	69753780	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:69753780C>T	uc001sux.2	+	1	249	c.28C>T	c.(28-30)CCT>TCT	p.P10S		NM_006530	NP_006521	O95619	YETS4_HUMAN	glioma-amplified sequence-41	10					histone H2A acetylation|histone H4 acetylation|mitosis|positive regulation of transcription, DNA-dependent|regulation of growth	NuA4 histone acetyltransferase complex|nuclear matrix	DNA binding|protein C-terminus binding|sequence-specific DNA binding transcription factor activity|structural constituent of cytoskeleton				0	all_epithelial(5;9.25e-35)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;6.89e-18)|BRCA - Breast invasive adenocarcinoma(5;3.14e-09)|Lung(24;9.68e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|OV - Ovarian serous cystadenocarcinoma(12;0.00691)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.24)|Kidney(9;0.241)			CGAATTTGGGCCTGACTCCGG	0.692000												
OSBPL8	114882	broad.mit.edu	37	12	76784264	76784264	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:76784264G>T	uc001sye.1	-	11	1583	c.1103C>A	c.(1102-1104)CCT>CAT	p.P368H	OSBPL8_uc001syf.1_Missense_Mutation_p.P326H|OSBPL8_uc001syg.1_Missense_Mutation_p.P326H|OSBPL8_uc001syh.1_Missense_Mutation_p.P343H	NM_020841	NP_065892	Q9BZF1	OSBL8_HUMAN	oxysterol-binding protein-like protein 8 isoform	368					lipid transport		lipid binding			ovary(1)	1						AACAGGCTCAGGTTCGATATA	0.398000												
GCN1L1	10985	broad.mit.edu	37	12	120612992	120612992	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:120612992C>T	uc001txo.2	-	12	1079	c.1066G>A	c.(1066-1068)GTA>ATA	p.V356I		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	356					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTCTGGGCTACAACAGTTAGT	0.313000												
DDX55	57696	broad.mit.edu	37	12	124094579	124094579	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:124094579G>A	uc001ufi.2	+	7	669	c.645G>A	c.(643-645)GCG>GCA	p.A215A	DDX55_uc001ufh.2_Silent_p.A68A|DDX55_uc001ufj.1_Silent_p.A68A|DDX55_uc001ufk.2_Silent_p.A68A	NM_020936	NP_065987	Q8NHQ9	DDX55_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	215	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000142)|Epithelial(86;0.000637)|all cancers(50;0.00772)		TGGTGAGAGCGGGCCTCCGGA	0.562000												
DNAH10	196385	broad.mit.edu	37	12	124399436	124399436	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:124399436G>A	uc001uft.3	+	61	10283	c.10258G>A	c.(10258-10260)GTT>ATT	p.V3420I		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3420	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGAGCTCTCCGTTCAGAATGG	0.552000												
SLC7A1	6541	broad.mit.edu	37	13	30096482	30096482	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr13:30096482G>A	uc001uso.2	-	8	1548	c.1161C>T	c.(1159-1161)ATC>ATT	p.I387I		NM_003045	NP_003036	P30825	CTR1_HUMAN	solute carrier family 7 (cationic amino acid	387	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	receptor activity				0		Lung SC(185;0.0257)|Breast(139;0.238)		all cancers(112;0.0148)|OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(112;0.0875)|GBM - Glioblastoma multiforme(144;0.179)	L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	CTAATGTGGCGATTATTGGTG	0.453000												
PDS5B	23047	broad.mit.edu	37	13	33275470	33275470	+	Missense_Mutation	SNP	C	C	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr13:33275470C>G	uc010abf.2	+	17	1909	c.1751C>G	c.(1750-1752)ACT>AGT	p.T584S	PDS5B_uc010abg.2_RNA	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	584					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		CGTGAAATAACTAAGAAGTTG	0.299000												
MAB21L1	4081	broad.mit.edu	37	13	36049807	36049807	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr13:36049807C>T	uc001uvc.2	-	1	1026	c.469G>A	c.(469-471)GAA>AAA	p.E157K	NBEA_uc001uvb.2_Intron|NBEA_uc010abi.2_Intron|NBEA_uc010tee.1_Intron|NBEA_uc010tef.1_5'Flank|NBEA_uc010teg.1_5'Flank	NM_005584	NP_005575	Q13394	MB211_HUMAN	mab-21-like protein 1	157					anatomical structure morphogenesis	nucleus				ovary(2)	2		Breast(139;0.014)|Lung SC(185;0.051)|Prostate(109;0.202)		all cancers(112;9.63e-08)|Epithelial(112;1.37e-06)|BRCA - Breast invasive adenocarcinoma(63;0.000659)|OV - Ovarian serous cystadenocarcinoma(117;0.00372)|GBM - Glioblastoma multiforme(144;0.115)		AGTTTCACTTCGCTGGTGTCT	0.572000												
WDFY2	115825	broad.mit.edu	37	13	52277737	52277737	+	Silent	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr13:52277737T>C	uc001vfp.2	+	4	625	c.285T>C	c.(283-285)TTT>TTC	p.F95F	WDFY2_uc010ads.1_Silent_p.F95F|WDFY2_uc010adt.1_RNA	NM_052950	NP_443182	Q96P53	WDFY2_HUMAN	WD repeat and FYVE domain containing 2	95	WD 2.						metal ion binding				0		Breast(56;0.000208)|Lung NSC(96;0.000517)|Prostate(109;0.0041)|Hepatocellular(98;0.0652)|Myeloproliferative disorder(33;0.164)|all_neural(104;0.191)		GBM - Glioblastoma multiforme(99;9e-08)		TACAGGAGTTTATATTGTCAG	0.308000												
ATP7B	540	broad.mit.edu	37	13	52539057	52539057	+	Missense_Mutation	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr13:52539057T>G	uc001vfw.2	-	5	1977	c.1820A>C	c.(1819-1821)AAG>ACG	p.K607T	ATP7B_uc010adv.2_Intron|ATP7B_uc001vfx.2_Missense_Mutation_p.K607T|ATP7B_uc001vfy.2_Missense_Mutation_p.K496T|ATP7B_uc010tgt.1_Missense_Mutation_p.K607T|ATP7B_uc010tgu.1_Missense_Mutation_p.K607T|ATP7B_uc010tgv.1_Missense_Mutation_p.K607T|ATP7B_uc010tgw.1_Intron	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	607	HMA 6.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		CGGGTCAAACTTAACAAGGGC	0.408000									Wilson_disease			
PCDH8	5100	broad.mit.edu	37	13	53422475	53422475	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr13:53422475G>A	uc001vhi.2	-	1	300	c.97C>T	c.(97-99)CGA>TGA	p.R33*	PCDH8_uc001vhj.2_Nonsense_Mutation_p.R33*	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	33	Extracellular (Potential).|Cadherin 1.				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		GTGCTGTATCGGACTGTTTTG	0.607000												
GPC5	2262	broad.mit.edu	37	13	92051456	92051456	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr13:92051456G>A	uc010tif.1	+	1	522	c.156G>A	c.(154-156)CCG>CCA	p.P52P		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	52						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				CGGATTCGCCGCGGGCAGGTA	0.677000												
ABCC4	10257	broad.mit.edu	37	13	95723915	95723915	+	Splice_Site	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr13:95723915C>T	uc001vmd.3	-	25	3329	c.3210_splice	c.e25+1	p.K1070_splice	ABCC4_uc010afk.2_Splice_Site_p.K1023_splice	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4						platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	TTTAAACAAACCTTTTCTTGT	0.413000												
MBNL2	10150	broad.mit.edu	37	13	97995278	97995278	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr13:97995278C>T	uc010aft.2	+	4	1164	c.348C>T	c.(346-348)TTC>TTT	p.F116F	MBNL2_uc001vmz.2_Silent_p.F116F|MBNL2_uc001vna.2_Silent_p.F116F|MBNL2_uc001vnb.2_RNA|MBNL2_uc010tij.1_Intron	NM_144778	NP_659002	Q5VZF2	MBNL2_HUMAN	muscleblind-like 2 isoform 1	116					mRNA processing|regulation of RNA splicing|RNA splicing	cytoplasm|nucleus	RNA binding|zinc ion binding				0	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.218)			AGCCCACTTTCCCTGTAGGTC	0.418000												
DOCK9	23348	broad.mit.edu	37	13	99554673	99554673	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr13:99554673C>T	uc001vnt.2	-	12	1307	c.1252G>A	c.(1252-1254)GTA>ATA	p.V418I	DOCK9_uc001vnw.2_Missense_Mutation_p.V417I|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.V418I|DOCK9_uc010tis.1_Missense_Mutation_p.V417I|DOCK9_uc010tit.1_Missense_Mutation_p.V418I|DOCK9_uc010afu.1_Missense_Mutation_p.V233I	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	418					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TTCAGGTCTACGTGGAAATCG	0.478000												
JPH4	84502	broad.mit.edu	37	14	24040545	24040545	+	Silent	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:24040545G>T	uc001wkq.2	-	6	2313	c.1395C>A	c.(1393-1395)GCC>GCA	p.A465A	JPH4_uc010tnr.1_Silent_p.A130A|JPH4_uc001wkr.2_Silent_p.A465A	NM_032452	NP_115828	Q96JJ6	JPH4_HUMAN	junctophilin 4	465	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane				ovary(1)|pancreas(1)	2	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		GGCGGGAGGAGGCAGGACTGC	0.662000												
PCK2	5106	broad.mit.edu	37	14	24572425	24572425	+	Missense_Mutation	SNP	G	G	A	rs61737097		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:24572425G>A	uc001wlt.2	+	9	1561	c.1429G>A	c.(1429-1431)GCC>ACC	p.A477T	NRL_uc001wlq.2_Intron|PCK2_uc001wlr.1_Missense_Mutation_p.A489T|PCK2_uc010tnw.1_Missense_Mutation_p.A343T|PCK2_uc010tnx.1_Missense_Mutation_p.A343T|PCK2_uc001wlu.3_Intron	NM_004563	NP_004554	Q16822	PCKGM_HUMAN	mitochondrial phosphoenolpyruvate carboxykinase	477					gluconeogenesis	mitochondrial matrix	GTP binding|metal ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0184)		TGTGGGCAGCGCCATGCGCTC	0.567000												
REC8	9985	broad.mit.edu	37	14	24646359	24646359	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:24646359G>A	uc001wmr.2	+	9	1061	c.634G>A	c.(634-636)GAG>AAG	p.E212K	REC8_uc001wms.2_Missense_Mutation_p.E212K	NM_005132	NP_005123	O95072	REC8_HUMAN	REC8 homolog	212	Glu-rich.				mitotic metaphase/anaphase transition|mitotic prometaphase|reciprocal meiotic recombination|sister chromatid cohesion	nucleoplasm					0				GBM - Glioblastoma multiforme(265;0.00839)		GGGTGAACGGGAGCTCCCAGA	0.557000												
FRMD6	122786	broad.mit.edu	37	14	52174877	52174877	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:52174877G>A	uc001wzd.2	+	7	925	c.640G>A	c.(640-642)GAA>AAA	p.E214K	FRMD6_uc001wzb.2_Missense_Mutation_p.E206K|FRMD6_uc001wzc.2_Missense_Mutation_p.E206K|FRMD6_uc001wze.2_Missense_Mutation_p.E137K	NM_152330	NP_689543	Q96NE9	FRMD6_HUMAN	FERM domain containing 6	214	FERM.					cytoskeleton|mitochondrion|plasma membrane	binding			ovary(1)|breast(1)|central_nervous_system(1)	3	all_epithelial(31;0.0163)|Breast(41;0.089)					AACAGCTTCCGAAGCTCATCT	0.438000												
RTN1	6252	broad.mit.edu	37	14	60337173	60337173	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:60337173G>A	uc001xen.1	-	1	385	c.176C>T	c.(175-177)GCG>GTG	p.A59V		NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	59					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		TTCCCGCGACGCCGCTTCCCG	0.756000												
HSPA2	3306	broad.mit.edu	37	14	65009232	65009232	+	Silent	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:65009232G>T	uc001xhj.2	+	2	1741	c.1665G>T	c.(1663-1665)ACG>ACT	p.T555T	HSPA2_uc001xhk.3_Silent_p.T555T	NM_021979	NP_068814	P54652	HSP72_HUMAN	heat shock 70kDa protein 2	555					response to unfolded protein|spermatid development	cell surface	ATP binding|unfolded protein binding			skin(1)	1				all cancers(60;0.00515)|OV - Ovarian serous cystadenocarcinoma(108;0.00584)|BRCA - Breast invasive adenocarcinoma(234;0.045)		TCAAGCAGACGGTGGAAGACG	0.542000												
ADCK1	57143	broad.mit.edu	37	14	78325429	78325429	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:78325429G>A	uc001xui.2	+	4	329	c.230G>A	c.(229-231)CGC>CAC	p.R77H	ADCK1_uc010tvo.1_RNA|ADCK1_uc001xuj.2_Intron|ADCK1_uc001xuk.1_5'UTR	NM_020421	NP_065154	Q86TW2	ADCK1_HUMAN	aarF domain containing kinase 1 isoform a	84						extracellular region	ATP binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)	3			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0376)		GTGCACCTTCGCTCTGCCAGG	0.597000												
SLC24A4	123041	broad.mit.edu	37	14	92913724	92913724	+	Silent	SNP	C	C	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:92913724C>G	uc001yak.2	+	9	666	c.642C>G	c.(640-642)GGC>GGG	p.G214G	SLC24A4_uc001yai.2_Silent_p.G167G|SLC24A4_uc010twm.1_Silent_p.G231G|SLC24A4_uc001yaj.2_Silent_p.G214G|SLC24A4_uc010auj.2_Silent_p.G122G|SLC24A4_uc010twn.1_5'UTR	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	231	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		GGTGGGAAGGCCTGGTGCTCA	0.582000												
HSP90AA1	3320	broad.mit.edu	37	14	102551151	102551151	+	Missense_Mutation	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:102551151T>G	uc001yku.3	-	5	1038	c.848A>C	c.(847-849)AAG>ACG	p.K283T	HSP90AA1_uc001ykv.3_Missense_Mutation_p.K405T|HSP90AA1_uc001ykw.1_Missense_Mutation_p.K104T|HSP90AA1_uc001ykx.1_Missense_Mutation_p.K272T	NM_005348	NP_005339	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 2	283					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	ATCGATGTActtttccttaat	0.279000												
TDRD9	122402	broad.mit.edu	37	14	104518407	104518407	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:104518407G>A	uc001yom.3	+	36	4167	c.4137G>A	c.(4135-4137)GTG>GTA	p.V1379V	TDRD9_uc001yon.3_Silent_p.V926V	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	1379					cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				AACTGGTTGTGCTCGGCACCT	0.577000												
KIF26A	26153	broad.mit.edu	37	14	104639558	104639558	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:104639558C>A	uc001yos.3	+	8	1665	c.1665C>A	c.(1663-1665)GAC>GAA	p.D555E		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	555	Kinesin-motor.				blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		TGCGGGAGGACCCCGTGTGTG	0.711000												
KIAA0284	283638	broad.mit.edu	37	14	105346656	105346656	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:105346656C>T	uc010axb.2	+	6	590	c.366C>T	c.(364-366)AGC>AGT	p.S122S	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Silent_p.S52S|KIAA0284_uc001yps.2_Silent_p.S28S	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	122						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		TGCAGGTGAGCGTGAAGGGTT	0.662000												
AHNAK2	113146	broad.mit.edu	37	14	105419697	105419697	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:105419697C>T	uc010axc.1	-	7	2211	c.2091G>A	c.(2089-2091)TCG>TCA	p.S697S	AHNAK2_uc001ypx.2_Silent_p.S597S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	697						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ACACATCCACCGAGGCCTCCA	0.597000												
GPR132	29933	broad.mit.edu	37	14	105517684	105517684	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:105517684C>T	uc001yqd.2	-	4	1689	c.790G>A	c.(790-792)GTC>ATC	p.V264I	GPR132_uc001yqc.2_Missense_Mutation_p.V76I|GPR132_uc001yqe.2_Missense_Mutation_p.V255I	NM_013345	NP_037477	Q9UNW8	GP132_HUMAN	G protein-coupled receptor 132	264	Helical; Name=6; (Potential).				response to stress	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.0953)|Melanoma(154;0.155)|all_epithelial(191;0.219)	OV - Ovarian serous cystadenocarcinoma(23;0.00778)|all cancers(16;0.00936)|Epithelial(46;0.0227)	Epithelial(152;0.02)|all cancers(159;0.0419)|OV - Ovarian serous cystadenocarcinoma(161;0.0521)		GCGGCTTTGACGAGGAGAACC	0.582000												
APBA2	321	broad.mit.edu	37	15	29406136	29406136	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:29406136C>T	uc001zck.2	+	13	2302	c.2095C>T	c.(2095-2097)CGC>TGC	p.R699C	APBA2_uc010uat.1_Missense_Mutation_p.R687C|APBA2_uc001zcl.2_Missense_Mutation_p.R687C	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	699	PDZ 2.				nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		TGTGGGCCACCGCATCATCGA	0.607000												
EIF2AK4	440275	broad.mit.edu	37	15	40259735	40259735	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:40259735G>A	uc001zkm.1	+	9	1258	c.1208G>A	c.(1207-1209)CGC>CAC	p.R403H	EIF2AK4_uc001zkl.2_Missense_Mutation_p.R403H|EIF2AK4_uc010bbj.1_Missense_Mutation_p.R132H	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	403	Protein kinase 1.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		CATCAGCTTCGCAGGTACACA	0.527000												
MGA	23269	broad.mit.edu	37	15	41961969	41961969	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:41961969C>A	uc001zog.1	+	2	968	c.877C>A	c.(877-879)CGT>AGT	p.R293S	MGA_uc010ucy.1_Missense_Mutation_p.R293S|MGA_uc010ucz.1_Missense_Mutation_p.R293S	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	293						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity	p.R293H(1)		ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		TCATCGGGTCCGTCTTACAGA	0.463000												
MAP1A	4130	broad.mit.edu	37	15	43815307	43815307	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:43815307C>T	uc001zrt.2	+	4	2103	c.1636C>T	c.(1636-1638)CTG>TTG	p.L546L		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	546						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GAGGGCTTTGCTGGCTGAACA	0.562000												
UNC13C	440279	broad.mit.edu	37	15	54307469	54307469	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:54307469A>C	uc002ack.2	+	1	2369	c.2369A>C	c.(2368-2370)AAG>ACG	p.K790T		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	790					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CTTTCTGATAAGACTTTCAGC	0.428000												
UNC13C	440279	broad.mit.edu	37	15	54529879	54529879	+	Silent	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:54529879T>C	uc002ack.2	+	5	3219	c.3219T>C	c.(3217-3219)AAT>AAC	p.N1073N		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1073					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CCCTAAATAATGAGGAACTGG	0.393000												
RORA	6095	broad.mit.edu	37	15	61521385	61521385	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:61521385G>A	uc002agx.2	-	1	118	c.33C>T	c.(31-33)GCC>GCT	p.A11A		NM_134261	NP_599023	P35398	RORA_HUMAN	RAR-related orphan receptor A isoform a	Error:Variant_position_missing_in_P35398_after_alignment					positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						GCTCGCTGGCGGCGGGGTCGG	0.677000												
C15orf27	123591	broad.mit.edu	37	15	76484307	76484307	+	Splice_Site	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:76484307A>C	uc002bbq.2	+	9	924	c.769_splice	c.e9-2	p.F257_splice	C15orf27_uc010bkp.2_Splice_Site_p.F73_splice|C15orf27_uc002bbr.2_Splice_Site_p.F73_splice|C15orf27_uc002bbs.2_5'UTR	NM_152335	NP_689548	Q2M3C6	CO027_HUMAN	hypothetical protein LOC123591							integral to membrane					0						CTCCCTCCGCAGTTTGAGATC	0.736000												
SGK269	79834	broad.mit.edu	37	15	77407583	77407583	+	Missense_Mutation	SNP	T	T	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:77407583T>A	uc002bcm.2	-	6	4464	c.4156A>T	c.(4156-4158)AAC>TAC	p.N1386Y		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1386	Protein kinase.				cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		TGCTGAATGTTAAAATGGACA	0.453000												
SGK269	79834	broad.mit.edu	37	15	77407588	77407588	+	Missense_Mutation	SNP	T	T	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:77407588T>A	uc002bcm.2	-	6	4459	c.4151A>T	c.(4150-4152)CAT>CTT	p.H1384L		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1384	Protein kinase.				cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		AATGTTAAAATGGACAGCCAG	0.448000												
PSMA4	5685	broad.mit.edu	37	15	78834913	78834913	+	Silent	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:78834913T>C	uc002bdu.3	+	4	293	c.135T>C	c.(133-135)CTT>CTC	p.L45L	PSMA4_uc010blf.2_Silent_p.L45L|PSMA4_uc002bdv.3_Intron|PSMA4_uc002bdw.3_Silent_p.L21L|PSMA4_uc002bdx.3_Intron	NM_002789	NP_002780	P25789	PSA4_HUMAN	proteasome alpha 4 subunit isoform 1	45					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	identical protein binding|threonine-type endopeptidase activity				0						GTGTTTTGCTTGCAGCAGAGA	0.368000												
KIAA1024	23251	broad.mit.edu	37	15	79750766	79750766	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:79750766C>T	uc002bew.1	+	2	2352	c.2277C>T	c.(2275-2277)GAC>GAT	p.D759D	KIAA1024_uc010unk.1_Silent_p.D759D	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	759						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						ATAATAAAGACTGGCATCGGA	0.463000												
AP3B2	8120	broad.mit.edu	37	15	83349359	83349359	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:83349359C>T	uc010uoh.1	-	8	1097	c.920G>A	c.(919-921)CGC>CAC	p.R307H	AP3B2_uc010uoi.1_Missense_Mutation_p.R307H|AP3B2_uc010uoj.1_Missense_Mutation_p.R275H|AP3B2_uc010uog.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	307					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			TTTGGTGTTGCGCAGCAGCAG	0.711000												
IGF1R	3480	broad.mit.edu	37	15	99467876	99467876	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:99467876G>A	uc002bul.2	+	13	2795	c.2745G>A	c.(2743-2745)TCG>TCA	p.S915S	IGF1R_uc010bon.2_Silent_p.S915S|IGF1R_uc010boo.1_RNA	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	915	Extracellular (Potential).|Fibronectin type-III 3.				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	GGAATGGGTCGTGGACAGATC	0.527000												
OR4F6	390648	broad.mit.edu	37	15	102346035	102346035	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:102346035G>A	uc010utr.1	+	1	113	c.113G>A	c.(112-114)AGC>AAC	p.S38N		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			TATGTGTCAAGCCTGATGGGA	0.488000												
RAB40C	57799	broad.mit.edu	37	16	676060	676060	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:676060G>A	uc002chr.2	+	5	620	c.504G>A	c.(502-504)ACG>ACA	p.T168T	RAB40C_uc002chq.2_Silent_p.T149T	NM_021168	NP_066991	Q96S21	RB40C_HUMAN	RAB40C, member RAS oncogene family	168					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0		Hepatocellular(780;0.0218)				AGTCCTTCACGGAGCTATCCC	0.642000												
CACNA1H	8912	broad.mit.edu	37	16	1248668	1248668	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:1248668G>A	uc002cks.2	+	6	945	c.697G>A	c.(697-699)GTC>ATC	p.V233I	CACNA1H_uc002ckt.2_Missense_Mutation_p.V233I	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	233	Helical; Name=S5 of repeat I; (Potential).|I.				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	gctcgggaacgtccttctGCT	0.453000												
CACNA1H	8912	broad.mit.edu	37	16	1252244	1252244	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:1252244C>T	uc002cks.2	+	9	2042	c.1794C>T	c.(1792-1794)GCC>GCT	p.A598A	CACNA1H_uc002ckt.2_Silent_p.A598A	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	598	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	CAGCCACTGCCGCTGCCAGCC	0.687000												
MAPK8IP3	23162	broad.mit.edu	37	16	1814167	1814167	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:1814167C>T	uc002cmk.2	+	18	2194	c.2074C>T	c.(2074-2076)CCG>TCG	p.P692S	MAPK8IP3_uc002cml.2_Missense_Mutation_p.P686S|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.P693S	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	692					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						CGTGCCGGTGCCGGTGTACTG	0.701000												
PKD1	5310	broad.mit.edu	37	16	2156158	2156158	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:2156158T>C	uc002cos.1	-	19	7846	c.7637A>G	c.(7636-7638)CAC>CGC	p.H2546R	PKD1_uc002cot.1_Missense_Mutation_p.H2546R|PKD1_uc010bse.1_5'Flank	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2546	Extracellular (Potential).|REJ.		H -> Y (in ADPKD1).		calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CACCTCGAAGTGTGGCCTGAA	0.697000												
DNAJA3	9093	broad.mit.edu	37	16	4492271	4492271	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:4492271C>T	uc002cwk.2	+	5	658	c.633C>T	c.(631-633)TAC>TAT	p.Y211Y	DNAJA3_uc002cwl.2_Silent_p.Y211Y|DNAJA3_uc010uxk.1_Silent_p.Y58Y	NM_005147	NP_005138	Q96EY1	DNJA3_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 3	211					activation of caspase activity|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of cell proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein kinase activity|neuromuscular junction development|positive regulation of apoptosis|positive regulation of protein ubiquitination|protein folding|protein folding|protein stabilization|response to heat|response to interferon-gamma	cytosol|mitochondrial matrix|mitochondrial nucleoid|nucleus	ATP binding|heat shock protein binding|interferon-gamma receptor binding|metal ion binding|NF-kappaB binding|protein kinase binding			ovary(2)|breast(2)	4						TTCTTTAGTACTTCATGGAGT	0.498000												
C16orf68	79091	broad.mit.edu	37	16	8722866	8722866	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:8722866G>T	uc002cyz.2	+	3	689	c.413G>T	c.(412-414)GGG>GTG	p.G138V	C16orf68_uc002cza.2_Intron	NM_024109	NP_077014	Q9BUU2	MET22_HUMAN	hypothetical protein LOC79091	138							methyltransferase activity				0						AACCCAGCAGGGCCTCTGAGA	0.557000												
NOMO3	408050	broad.mit.edu	37	16	16357002	16357002	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:16357002C>T	uc002deq.2	+	13	1602	c.1467C>T	c.(1465-1467)ACC>ACT	p.T489T	NOMO3_uc002dep.2_Silent_p.T489T|NOMO3_uc010bvp.1_Silent_p.T322T	NM_001004067	NP_001004067	P69849	NOMO3_HUMAN	nodal modulator 3 precursor	489	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity				0				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		TTACTGTGACCGACAGGCCTG	0.488000												
DNAH3	55567	broad.mit.edu	37	16	20996456	20996456	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:20996456G>A	uc010vbe.1	-	48	7608	c.7608C>T	c.(7606-7608)ACC>ACT	p.T2536T	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2536	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCTCTCCTTGGGTCCTGGCTG	0.463000												
MVP	9961	broad.mit.edu	37	16	29857217	29857217	+	Silent	SNP	C	C	T	rs149725123		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:29857217C>T	uc002dui.2	+	12	2139	c.2055C>T	c.(2053-2055)CGC>CGT	p.R685R	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc002duj.2_Silent_p.R685R|MVP_uc010vea.1_Silent_p.R279R	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	685					mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						AGGAAGCCCGCGGCCGGCTTG	0.622000												
NLRC5	84166	broad.mit.edu	37	16	57057705	57057705	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:57057705C>T	uc002ekk.1	+	5	589	c.364C>T	c.(364-366)CGC>TGC	p.R122C	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_5'Flank|NLRC5_uc002ekl.2_5'Flank|NLRC5_uc002ekm.2_5'Flank|NLRC5_uc010ccr.1_5'Flank	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	122					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				AGGCCTGAAGCGCCCACATCA	0.587000												
NOL3	8996	broad.mit.edu	37	16	67208556	67208556	+	Silent	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:67208556C>A	uc010vjd.1	+	3	511	c.504C>A	c.(502-504)GCC>GCA	p.A168A	NOL3_uc010vjc.1_Missense_Mutation_p.P172T|NOL3_uc002erp.2_Missense_Mutation_p.P110T			O60936	NOL3_HUMAN	RecName: Full=Nucleolar protein 3; AltName: Full=Apoptosis repressor with CARD; AltName: Full=Muscle-enriched cytoplasmic protein;          Short=Myp; AltName: Full=Nucleolar protein of 30 kDa;          Short=Nop30;	106					anti-apoptosis|apoptosis|mRNA processing|RNA splicing	cytosol|nucleolus	identical protein binding|RNA binding				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.0335)|all cancers(182;0.184)		CCCTCCATGCCCAGGCCACTG	0.667000												
CNTNAP4	85445	broad.mit.edu	37	16	76483708	76483708	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:76483708G>T	uc002feu.1	+	9	1409	c.1024G>T	c.(1024-1026)GAT>TAT	p.D342Y	CNTNAP4_uc002fev.1_Intron|CNTNAP4_uc010chb.1_Intron|CNTNAP4_uc002fex.1_Missense_Mutation_p.D345Y|CNTNAP4_uc002few.2_Missense_Mutation_p.D317Y	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	342	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TAATGGAGTGGATATCATTGA	0.363000												
CBFA2T3	863	broad.mit.edu	37	16	88951490	88951490	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:88951490C>T	uc002fmm.1	-	7	1267	c.1081G>A	c.(1081-1083)GAC>AAC	p.D361N	CBFA2T3_uc002fml.1_Missense_Mutation_p.D275N|CBFA2T3_uc010cif.1_Missense_Mutation_p.D300N|CBFA2T3_uc002fmn.1_Missense_Mutation_p.D336N	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	361	Mediates localization to the nucleus (By similarity).|Mediates interaction with PDE7A (in isoform 2).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		TCCCGGGGGTCTGGGTGGCGG	0.697000			T	RUNX1	AML							
RPH3AL	9501	broad.mit.edu	37	17	96929	96929	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:96929G>A	uc002frd.1	-	5	630	c.586C>T	c.(586-588)CGC>TGC	p.R196C	RPH3AL_uc010vpy.1_Missense_Mutation_p.R196C|RPH3AL_uc002fre.1_Missense_Mutation_p.R196C|RPH3AL_uc002frf.1_Missense_Mutation_p.R167C|RPH3AL_uc010cjl.1_Missense_Mutation_p.R167C	NM_006987	NP_008918	Q9UNE2	RPH3L_HUMAN	rabphilin 3A-like (without C2 domains)	196					exocytosis|intracellular protein transport	transport vesicle membrane	cytoskeletal protein binding|Rab GTPase binding|zinc ion binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.023)|all cancers(1;4.96e-06)|Epithelial(1;2.86e-05)|BRCA - Breast invasive adenocarcinoma(1;0.00453)|OV - Ovarian serous cystadenocarcinoma(1;0.0716)|LUAD - Lung adenocarcinoma(1115;0.102)|COAD - Colon adenocarcinoma(4;0.107)		GTGTAGATGCGGCTGGTCTCA	0.612000												
ZBTB4	57659	broad.mit.edu	37	17	7365532	7365532	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:7365532C>T	uc002ghc.3	-	4	3019	c.2769G>A	c.(2767-2769)CCG>CCA	p.P923P	ZBTB4_uc002ghd.3_Silent_p.P923P	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	923					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		CATAGACGAGCGGGTAGGGCT	0.602000												
ARHGEF15	22899	broad.mit.edu	37	17	8222199	8222199	+	Silent	SNP	C	C	T	rs142705439	byFrequency	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:8222199C>T	uc002glc.2	+	12	2125	c.2004C>T	c.(2002-2004)AGC>AGT	p.S668S	ARHGEF15_uc002gld.2_Silent_p.S668S|ARHGEF15_uc010vuw.1_Silent_p.S557S	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	668					negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						TGCTCTTTAGCGACCTGCTGC	0.637000												
MYH8	4626	broad.mit.edu	37	17	10317533	10317533	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:10317533G>A	uc002gmm.2	-	11	1079	c.984C>T	c.(982-984)GAC>GAT	p.D328D	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	328	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						ACTCTTCTTGGTCATCAATAC	0.423000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling			
DNAH9	1770	broad.mit.edu	37	17	11872784	11872784	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:11872784G>A	uc002gne.2	+	69	13469	c.13401G>A	c.(13399-13401)AAG>AAA	p.K4467K	DNAH9_uc010coo.2_Silent_p.K3685K|DNAH9_uc002gnf.2_Silent_p.K779K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4467					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TCAACCTGAAGACTAAGGAAA	0.507000												
SMCR8	140775	broad.mit.edu	37	17	18220238	18220238	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:18220238G>A	uc002gsy.3	+	1	1645	c.1135G>A	c.(1135-1137)GAT>AAT	p.D379N		NM_144775	NP_658988	Q8TEV9	SMCR8_HUMAN	Smith-Magenis syndrome chromosome region,	379										central_nervous_system(1)	1						TGTGGAGGTCGATGACAGGAT	0.448000												
RNF112	7732	broad.mit.edu	37	17	19318461	19318461	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:19318461G>A	uc010vyw.1	+	11	1436	c.1237G>A	c.(1237-1239)GCC>ACC	p.A413T	RNF112_uc010vyv.1_Missense_Mutation_p.A414T|RNF112_uc010vyx.1_Missense_Mutation_p.A296T	NM_007148	NP_009079	Q7Z5V9	Q7Z5V9_HUMAN	ring finger protein 112	413							GTP binding|GTPase activity|zinc ion binding			ovary(2)	2						CGAGGGGCGCGCCGTGGCCAG	0.662000												
LRRC37B	114659	broad.mit.edu	37	17	30376229	30376229	+	Nonsense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:30376229C>A	uc002hgu.2	+	10	2503	c.2492C>A	c.(2491-2493)TCA>TAA	p.S831*	LRRC37B_uc010wbx.1_Nonsense_Mutation_p.S749*|LRRC37B_uc010csu.2_Nonsense_Mutation_p.S780*	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	831	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				ATGGAATGTTCAGAAACACAT	0.488000												
MYO1D	4642	broad.mit.edu	37	17	31039133	31039133	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:31039133C>T	uc002hho.1	-	16	2006	c.1994G>A	c.(1993-1995)CGG>CAG	p.R665Q	MYO1D_uc002hhp.1_Missense_Mutation_p.R665Q	NM_015194	NP_056009	O94832	MYO1D_HUMAN	myosin ID	665	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3			BRCA - Breast invasive adenocarcinoma(9;0.0362)			AAAACCACACCGTTCAATTAG	0.423000												
SLFN5	162394	broad.mit.edu	37	17	33586177	33586177	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:33586177G>T	uc002hjf.3	+	2	585	c.468G>T	c.(466-468)CAG>CAT	p.Q156H	SLFN5_uc002hje.2_Missense_Mutation_p.Q156H|SLFN5_uc010wcg.1_Missense_Mutation_p.Q156H	NM_144975	NP_659412	Q08AF3	SLFN5_HUMAN	schlafen family member 5	156					cell differentiation		ATP binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0191)		TAGGTCCACAGGCAGCTCAGG	0.428000												
STARD3	10948	broad.mit.edu	37	17	37817248	37817248	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:37817248T>C	uc002hsd.2	+	13	1173	c.1049T>C	c.(1048-1050)GTC>GCC	p.V350A	STARD3_uc010weh.1_RNA|STARD3_uc002hse.2_Missense_Mutation_p.V332A|STARD3_uc010wei.1_Missense_Mutation_p.V350A|STARD3_uc002hsf.2_Missense_Mutation_p.V216A|STARD3_uc002hsg.2_Missense_Mutation_p.V183A	NM_006804	NP_006795	Q14849	STAR3_HUMAN	StAR-related lipid transfer (START) domain	350	START.|Cytoplasmic (Potential).				cholesterol metabolic process|mitochondrial transport|steroid biosynthetic process	integral to membrane|late endosome membrane	cholesterol binding|cholesterol transporter activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			TTCGTGAATGTCCGGCGCATT	0.607000												
FKBP10	60681	broad.mit.edu	37	17	39978604	39978604	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:39978604G>A	uc002hxv.2	+	10	2018	c.1693G>A	c.(1693-1695)GAC>AAC	p.D565N	FKBP10_uc002hxw.1_Missense_Mutation_p.D329N	NM_021939	NP_068758	Q96AY3	FKB10_HUMAN	FK506 binding protein 10 precursor	565	EF-hand 2.|2 (Potential).				protein folding	endoplasmic reticulum lumen|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Breast(137;0.00122)		BRCA - Breast invasive adenocarcinoma(366;0.148)		GATCACAGTCGACGAGCTCAA	0.612000												
TTC25	83538	broad.mit.edu	37	17	40087077	40087077	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:40087077A>G	uc002hyj.3	+	1	190	c.101A>G	c.(100-102)CAG>CGG	p.Q34R	TTC25_uc010cxt.2_RNA|TTC25_uc010cxs.1_Missense_Mutation_p.Q34R	NM_031421	NP_113609	Q96NG3	TTC25_HUMAN	tetratricopeptide repeat domain 25	34	TPR 1.					cytoplasm	protein binding			ovary(1)	1		all_cancers(22;8.16e-06)|Breast(137;0.000143)|all_epithelial(22;0.000236)				AAAGCCGCGCAGAGCTTCAGC	0.453000												
NAGLU	4669	broad.mit.edu	37	17	40693036	40693036	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:40693036C>T	uc002hzv.2	+	5	1173	c.833C>T	c.(832-834)TCC>TTC	p.S278F		NM_000263	NP_000254	P54802	ANAG_HUMAN	alpha-N-acetylglucosaminidase precursor	278						lysosome	alpha-N-acetylglucosaminidase activity				0		all_cancers(22;1.58e-05)|Breast(137;0.000153)|all_epithelial(22;0.000344)		BRCA - Breast invasive adenocarcinoma(366;0.13)	N-Acetyl-D-glucosamine(DB00141)	TACTCCTGCTCCTTCCTTCTG	0.532000												
GRN	2896	broad.mit.edu	37	17	42430079	42430079	+	Silent	SNP	C	C	T	rs63751248		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:42430079C>T	uc002igp.1	+	13	1914	c.1695C>T	c.(1693-1695)TGC>TGT	p.C565C	GRN_uc002igr.1_3'UTR	NM_002087	NP_002078	P28799	GRN_HUMAN	granulin precursor	565					signal transduction	extracellular space	cytokine activity|growth factor activity			ovary(2)|central_nervous_system(2)|skin(1)	5		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		GCTTCCGCTGCGCAGCCAGGG	0.662000												
C17orf46	124783	broad.mit.edu	37	17	43333097	43333097	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:43333097G>A	uc002iis.1	-	4	548	c.452C>T	c.(451-453)GCG>GTG	p.A151V	LOC100133991_uc010dah.2_Intron|C17orf46_uc010wjk.1_Missense_Mutation_p.A130V	NM_152343	NP_689556	Q96LK8	CQ046_HUMAN	hypothetical protein LOC124783	151										large_intestine(1)|ovary(1)	2						GGAGGTCTGCGCACTGATGGA	0.582000												
IMP5	162540	broad.mit.edu	37	17	43922586	43922586	+	Missense_Mutation	SNP	C	C	T	rs139470538	byFrequency	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:43922586C>T	uc010wka.1	+	1	314	c.314C>T	c.(313-315)ACG>ATG	p.T105M	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	105	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		AGCTTCCACACGAAAGGCTGG	0.667000												
WNT9B	7484	broad.mit.edu	37	17	44949949	44949949	+	Silent	SNP	C	C	T	rs146743600	byFrequency	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:44949949C>T	uc002ikw.1	+	2	181	c.144C>T	c.(142-144)GGC>GGT	p.G48G	WNT9B_uc002ikx.1_Silent_p.G48G	NM_003396	NP_003387	O14905	WNT9B_HUMAN	wingless-type MMTV integration site family,	48					anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|collecting duct development|cornea development in camera-type eye|endoderm development|establishment of planar polarity involved in nephron morphogenesis|kidney rudiment formation|male genitalia development|mesonephric duct formation|metanephric tubule development|neuron differentiation|palate development|regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|uterus morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway|Wnt receptor signaling pathway, planar cell polarity pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			CGGCACAGGGCGGGGCCCACC	0.692000												
HOXB3	3213	broad.mit.edu	37	17	46629614	46629614	+	Silent	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:46629614T>G	uc002inn.2	-	1	623	c.223A>C	c.(223-225)AGG>CGG	p.R75R	HOXB3_uc010wlm.1_Silent_p.R2R|HOXB3_uc010dbf.2_Silent_p.R75R|HOXB3_uc010dbg.2_Silent_p.R75R|HOXB3_uc002ino.2_Silent_p.R75R|HOXB3_uc010wlk.1_Intron|HOXB3_uc010wll.1_Silent_p.R2R	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	75					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						AGACCCGGCCTCATGCAGCTG	0.692000												
SPATA20	64847	broad.mit.edu	37	17	48628247	48628247	+	Missense_Mutation	SNP	T	T	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:48628247T>A	uc002irf.2	+	10	1445	c.1304T>A	c.(1303-1305)CTC>CAC	p.L435H	SPATA20_uc002irc.2_Missense_Mutation_p.L102H|SPATA20_uc002ire.2_Missense_Mutation_p.L391H|SPATA20_uc002ird.2_Missense_Mutation_p.L451H|SPATA20_uc010wmv.1_3'UTR|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	435					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			CACTACGGCCTCACAGAGGCT	0.637000											OREG0024568	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
GDPD1	284161	broad.mit.edu	37	17	57344479	57344479	+	Silent	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:57344479C>A	uc002ixk.1	+	7	791	c.654C>A	c.(652-654)CCC>CCA	p.P218P	GDPD1_uc002ixj.2_Silent_p.P218P	NM_182569	NP_872375	Q8N9F7	GDPD1_HUMAN	glycerophosphodiester phosphodiesterase domain	218	GDPD.|Extracellular (Potential).				glycerol metabolic process|lipid metabolic process	cytoplasm|integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					GCCTCTTGCCCTTTGTGCCCA	0.363000												
USH1G	124590	broad.mit.edu	37	17	72916026	72916026	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:72916026C>T	uc002jme.1	-	2	1088	c.905G>A	c.(904-906)GGC>GAC	p.G302D	USH1G_uc010wro.1_Missense_Mutation_p.G199D	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	302					equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					GGAGTCGTGGCCTGAGTCGGT	0.682000												
NARF	26502	broad.mit.edu	37	17	80430462	80430462	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:80430462G>A	uc002kfg.3	+	5	548	c.408G>A	c.(406-408)ACG>ACA	p.T136T	NARF_uc002kff.3_Silent_p.T77T|NARF_uc010wvo.1_Intron|NARF_uc010wvp.1_Intron|NARF_uc010dit.2_Silent_p.T136T|NARF_uc002kfj.3_Silent_p.T88T|NARF_uc002kfi.3_RNA|NARF_uc002kfh.3_Silent_p.T136T|NARF_uc002kfk.2_RNA	NM_012336	NP_036468	Q9UHQ1	NARF_HUMAN	nuclear prelamin A recognition factor isoform a	136						lamin filament	lamin binding			skin(1)	1	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			TATTTGATACGACGATAGCTG	0.433000												
EPB41L3	23136	broad.mit.edu	37	18	5416287	5416287	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr18:5416287T>C	uc002kmt.1	-	13	1683	c.1597A>G	c.(1597-1599)AAG>GAG	p.K533E	EPB41L3_uc010wzh.1_Intron|EPB41L3_uc002kmu.1_Intron|EPB41L3_uc010dkq.1_Intron|EPB41L3_uc002kms.1_Intron|EPB41L3_uc010wze.1_Intron|EPB41L3_uc010wzf.1_Intron|EPB41L3_uc010wzg.1_Intron|EPB41L3_uc010dkr.2_Intron	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	533	Spectrin--actin-binding (Potential).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						TCATTCTCCTTACACCTCCTA	0.582000												
LAMA1	284217	broad.mit.edu	37	18	7040146	7040146	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr18:7040146A>C	uc002knm.2	-	10	1445	c.1351T>G	c.(1351-1353)TGT>GGT	p.C451G	LAMA1_uc010wzj.1_5'UTR	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	451	Laminin EGF-like 3.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CAGGAGACACAGGTCGGGTAA	0.537000												
ROCK1	6093	broad.mit.edu	37	18	18586553	18586553	+	Missense_Mutation	SNP	T	T	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr18:18586553T>A	uc002kte.2	-	16	2585	c.1644A>T	c.(1642-1644)GAA>GAT	p.E548D		NM_005406	NP_005397	Q13464	ROCK1_HUMAN	Rho-associated, coiled-coil containing protein	548	Interaction with FHOD1.|Potential.				actin cytoskeleton organization|axon guidance|cellular component disassembly involved in apoptosis|cytokinesis|leukocyte tethering or rolling|membrane to membrane docking|Rho protein signal transduction	centriole|cytosol|Golgi membrane	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			lung(2)|breast(2)|central_nervous_system(1)	5	Melanoma(1;0.165)					CATTGGCTTCTTCTAGCTATT	0.338000												
MYO5B	4645	broad.mit.edu	37	18	47432990	47432990	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr18:47432990T>C	uc002leb.2	-	19	2501	c.2213A>G	c.(2212-2214)AAG>AGG	p.K738R		NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	738	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		AAACTGGAACTTGTCGGGGTC	0.547000												
ADNP2	22850	broad.mit.edu	37	18	77894218	77894218	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr18:77894218C>T	uc002lnw.2	+	4	1377	c.922C>T	c.(922-924)CCA>TCA	p.P308S		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	308	Pro-rich.				cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		CGCAGGACAGCCAGTGACTGT	0.632000												
LPPR3	79948	broad.mit.edu	37	19	812972	812972	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:812972C>T	uc002lpx.1	-	8	1819	c.1755G>A	c.(1753-1755)GCG>GCA	p.A585A	LPPR3_uc010dru.1_Intron|LPPR3_uc002lpw.1_Silent_p.A613A|LPPR3_uc002lpy.1_Silent_p.A366A|hsa-mir-3187|MI0014231_5'Flank	NM_024888	NP_079164	Q6T4P5	LPPR3_HUMAN	plasticity-related protein 2	585						integral to membrane	phosphatidate phosphatase activity				0						GCGGCGCGTGCGCGTCGATGG	0.771000												
GADD45B	4616	broad.mit.edu	37	19	2477069	2477069	+	Missense_Mutation	SNP	G	G	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:2477069G>C	uc002lwb.1	+	3	411	c.189G>C	c.(187-189)GAG>GAC	p.E63D	GADD45B_uc010dtd.1_Missense_Mutation_p.E48D|GADD45B_uc002lwc.1_Missense_Mutation_p.E48D	NM_015675	NP_056490	O75293	GA45B_HUMAN	growth arrest and DNA-damage-inducible, beta	63					activation of MAPKKK activity|apoptosis|cell differentiation|multicellular organismal development|response to stress						0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCATTGACGAGGAGGAGGAGG	0.627000											OREG0025141	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
TLE2	7089	broad.mit.edu	37	19	3009543	3009543	+	Silent	SNP	G	G	A	rs145514117	by1000genomes	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:3009543G>A	uc002lww.2	-	13	1433	c.1170C>T	c.(1168-1170)CCC>CCT	p.P390P	TLE2_uc010xhb.1_Silent_p.P57P|TLE2_uc010dth.2_Silent_p.P391P|TLE2_uc010xhc.1_Silent_p.P268P|TLE2_uc010dti.2_Silent_p.P404P|TLE2_uc010xhd.1_Silent_p.P298P	NM_003260	NP_003251	Q04725	TLE2_HUMAN	transducin-like enhancer protein 2 isoform 1	390	Pro/Ser-rich.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GACTCACCACGGGGGAGCGTC	0.647000												
AES	166	broad.mit.edu	37	19	3053823	3053823	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:3053823C>T	uc002lwy.1	-	7	761	c.588G>A	c.(586-588)TCG>TCA	p.S196S	AES_uc002lwx.1_3'UTR|AES_uc002lwz.1_Silent_p.S195S|AES_uc002lxa.1_Silent_p.S140S|AES_uc002lxb.1_Silent_p.S263S|AES_uc002lxc.2_3'UTR	NM_001130	NP_001121	Q08117	AES_HUMAN	amino-terminal enhancer of split isoform b	196	CCN domain.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of response to cytokine stimulus|negative regulation of transcription from RNA polymerase II promoter|organ morphogenesis|response to interleukin-1|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTGCTAATCCGACTTCTCGC	0.617000												
DUS3L	56931	broad.mit.edu	37	19	5789651	5789651	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:5789651G>A	uc002mdc.2	-	3	564	c.467C>T	c.(466-468)GCC>GTC	p.A156V	DUS3L_uc002mdd.2_Intron|DUS3L_uc010duk.2_5'UTR|DUS3L_uc010xiw.1_Intron	NM_020175	NP_064560	Q96G46	DUS3L_HUMAN	dihydrouridine synthase 3-like isoform 1	156	C3H1-type 2.				tRNA processing		flavin adenine dinucleotide binding|nucleic acid binding|tRNA dihydrouridine synthase activity|zinc ion binding				0						GCCCAGGTCGGCCGGCTTGGT	0.647000												
XAB2	56949	broad.mit.edu	37	19	7691040	7691040	+	Silent	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:7691040G>T	uc002mgx.2	-	5	665	c.639C>A	c.(637-639)GCC>GCA	p.A213A		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	213	HAT 6.				transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						TGGACTTGCCGGCCTTAGACA	0.642000								Direct_reversal_of_damage|NER				
MUC16	94025	broad.mit.edu	37	19	9085983	9085983	+	Silent	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:9085983T>C	uc002mkp.2	-	1	6036	c.5832A>G	c.(5830-5832)GAA>GAG	p.E1944E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1944	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAATGACTTCTTCCACTGGAA	0.488000												
ICAM3	3385	broad.mit.edu	37	19	10446426	10446426	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:10446426G>A	uc002mob.2	-	3	625	c.570C>T	c.(568-570)TGC>TGT	p.C190C	RAVER1_uc002moa.2_5'Flank|ICAM3_uc010dxd.1_Silent_p.C113C|ICAM3_uc010xlf.1_Silent_p.C113C	NM_002162	NP_002153	P32942	ICAM3_HUMAN	intercellular adhesion molecule 3 precursor	190	Extracellular (Potential).|Ig-like C2-type 2.				cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;6.13e-09)|Epithelial(33;9.69e-06)|all cancers(31;2.05e-05)			GTTCTGTGCGGCATGAGAAAG	0.657000												
ZNF653	115950	broad.mit.edu	37	19	11594503	11594503	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:11594503G>A	uc002mrz.1	-	9	1895	c.1842C>T	c.(1840-1842)CCC>CCT	p.P614P	ELAVL3_uc002mrx.1_5'Flank|ELAVL3_uc002mry.1_5'Flank	NM_138783	NP_620138	Q96CK0	ZN653_HUMAN	zinc finger protein 653	614					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGGGTCAGGTGGGCTTGTGAT	0.642000												
ZNF878	729747	broad.mit.edu	37	19	12155555	12155555	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:12155555G>A	uc002mta.1	-	5	802	c.802C>T	c.(802-804)CAC>TAC	p.H268Y		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	221	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						TCTCCAGTGTGCATTCTCATG	0.393000												
MAN2B1	4125	broad.mit.edu	37	19	12766648	12766648	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:12766648G>T	uc002mub.2	-	14	1766	c.1690C>A	c.(1690-1692)CTG>ATG	p.L564M	MAN2B1_uc010dyv.1_Missense_Mutation_p.L563M	NM_000528	NP_000519	O00754	MA2B1_HUMAN	mannosidase, alpha, class 2B, member 1	564					protein deglycosylation	lysosome	alpha-mannosidase activity|zinc ion binding			ovary(4)|central_nervous_system(2)	6						GAGAACAGCAGCTCCGGAGGG	0.597000												
ASNA1	439	broad.mit.edu	37	19	12858229	12858229	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:12858229C>T	uc002muv.2	+	6	752	c.738C>T	c.(736-738)TGC>TGT	p.C246C	ASNA1_uc002muw.2_Silent_p.C245C	NM_004317	NP_004308	O43681	ASNA_HUMAN	arsA arsenite transporter, ATP-binding, homolog	246					response to arsenic-containing substance	endoplasmic reticulum|nucleolus|soluble fraction	arsenite-transporting ATPase activity|ATP binding|metal ion binding			ovary(2)	2					Adenosine triphosphate(DB00171)	CTTTCATCTGCGTATGCATTG	0.572000												
RTBDN	83546	broad.mit.edu	37	19	12936719	12936719	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:12936719C>T	uc002mvi.2	-	6	621	c.491G>A	c.(490-492)CGC>CAC	p.R164H	RTBDN_uc002mvh.1_3'UTR|RTBDN_uc002mvj.2_Missense_Mutation_p.R196H	NM_001080997	NP_001074466	Q9BSG5	RTBDN_HUMAN	retbindin isoform 1	164						extracellular region					0						CAGAGCCGAGCGACAAAGGTC	0.647000											OREG0025275	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
CALR	811	broad.mit.edu	37	19	13051426	13051426	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:13051426C>T	uc002mvu.2	+	6	854	c.774C>T	c.(772-774)GAC>GAT	p.D258D		NM_004343	NP_004334	P27797	CALR_HUMAN	calreticulin precursor	258	P-domain.				cell cycle arrest|cellular senescence|glucocorticoid receptor signaling pathway|negative regulation of neuron differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of steroid hormone receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of translation|peptide antigen assembly with MHC class I protein complex|positive regulation of cell cycle|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of phagocytosis|post-translational protein modification|protein export from nucleus|protein maturation by protein folding|protein N-linked glycosylation via asparagine|protein stabilization|regulation of apoptosis|sequestering of calcium ion	cytosol|endoplasmic reticulum lumen|extracellular space|MHC class I peptide loading complex|nucleus|perinuclear region of cytoplasm|polysome|proteinaceous extracellular matrix	androgen receptor binding|calcium ion binding|chaperone binding|complement component C1q binding|DNA binding|integrin binding|mRNA binding|protein binding involved in protein folding|sugar binding|ubiquitin protein ligase binding|unfolded protein binding|zinc ion binding			ovary(1)	1					Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Reteplase(DB00015)|Tenecteplase(DB00031)	AAGAGATGGACGGAGAGTGGG	0.572000												
ZSWIM4	65249	broad.mit.edu	37	19	13941297	13941297	+	Silent	SNP	C	C	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:13941297C>G	uc002mxh.1	+	13	2592	c.2403C>G	c.(2401-2403)GGC>GGG	p.G801G	ZSWIM4_uc010xng.1_Silent_p.G724G	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	801							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			GCGGCCTGGGCCACGCCCACC	0.701000												
AKAP8	10270	broad.mit.edu	37	19	15483797	15483797	+	Silent	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:15483797C>A	uc002nav.2	-	5	787	c.726G>T	c.(724-726)CGG>CGT	p.R242R	AKAP8_uc010dzy.2_5'UTR|AKAP8_uc010dzz.1_RNA|AKAP8_uc010xog.1_Silent_p.R56R	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	242					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						ACGGAGGTGGCCGGCTGGGGG	0.697000												
KCNN1	3780	broad.mit.edu	37	19	18085055	18085055	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:18085055G>A	uc002nht.2	+	3	668	c.358G>A	c.(358-360)GTC>ATC	p.V120I	KCNN1_uc010xqa.1_Missense_Mutation_p.V120I	NM_002248	NP_002239	Q92952	KCNN1_HUMAN	potassium intermediate/small conductance	120	Helical; Name=Segment S1; (Potential).				synaptic transmission	voltage-gated potassium channel complex	calmodulin binding|small conductance calcium-activated potassium channel activity				0						TGGCATCGTCGTCATGGTGAC	0.642000												
ZNF257	113835	broad.mit.edu	37	19	22256357	22256357	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:22256357A>G	uc010ecx.2	+	3	386	c.217A>G	c.(217-219)AAA>GAA	p.K73E	ZNF257_uc010ecy.2_Missense_Mutation_p.K41E	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	73	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				GATGGTAGCCAAACCCCCAGG	0.443000												
ZNF99	7652	broad.mit.edu	37	19	22952753	22952753	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:22952753A>C	uc010xrh.1	-	1	32	c.32T>G	c.(31-33)CTT>CGT	p.L11R		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				ATACAGAATAAGTCTTGTACA	0.224000												
ZNF681	148213	broad.mit.edu	37	19	23926764	23926764	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:23926764C>T	uc002nrk.3	-	4	1730	c.1588G>A	c.(1588-1590)GGA>AGA	p.G530R	ZNF681_uc002nrl.3_Missense_Mutation_p.G461R|ZNF681_uc002nrj.3_Missense_Mutation_p.G461R	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	530					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				GGTTTCTCTCCAGTATGAATT	0.378000												
CCDC97	90324	broad.mit.edu	37	19	41822657	41822657	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:41822657G>T	uc002oqg.2	+	2	537	c.415G>T	c.(415-417)GTG>TTG	p.V139L	CYP2F1_uc010xvw.1_Intron	NM_052848	NP_443080	Q96F63	CCD97_HUMAN	coiled-coil domain containing 97	139											0						CTGTGCTGAGGTGGCCCGGCA	0.687000												
RABAC1	10567	broad.mit.edu	37	19	42462919	42462919	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:42462919A>G	uc002osf.2	-	2	322	c.238T>C	c.(238-240)TTC>CTC	p.F80L		NM_006423	NP_006414	Q9UI14	PRAF1_HUMAN	Rab acceptor 1	80	Helical; (By similarity).					cell junction|Golgi apparatus|integral to membrane|synaptic vesicle	identical protein binding				0						AGGAACACGAACACATAGTTG	0.448000												
GPR77	27202	broad.mit.edu	37	19	47844955	47844955	+	Missense_Mutation	SNP	G	G	A	rs117238101	by1000genomes	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:47844955G>A	uc010ela.1	+	2	1117	c.899G>A	c.(898-900)CGC>CAC	p.R300H	GPR77_uc002pgk.1_Missense_Mutation_p.R300H	NM_018485	NP_060955	Q9P296	C5ARL_HUMAN	G protein-coupled receptor 77	300	Cytoplasmic (Potential).				chemotaxis	integral to membrane|plasma membrane	C5a anaphylatoxin receptor activity	p.R300L(1)		ovary(1)	1		all_cancers(25;1.72e-06)|all_lung(116;2.15e-05)|all_epithelial(76;3.44e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.0652)|Ovarian(192;0.086)		all cancers(93;0.000129)|OV - Ovarian serous cystadenocarcinoma(262;0.000415)|Epithelial(262;0.0109)|GBM - Glioblastoma multiforme(486;0.0138)		GCTCAACTCCGCCGGTCACTG	0.632000												
LIG1	3978	broad.mit.edu	37	19	48638989	48638989	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:48638989C>T	uc002pia.1	-	16	1591	c.1471G>A	c.(1471-1473)GCC>ACC	p.A491T	LIG1_uc010xze.1_Missense_Mutation_p.A184T|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Missense_Mutation_p.A423T|LIG1_uc010xzg.1_Missense_Mutation_p.A460T	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	491					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	GTCTTTCTGGCCTCTGCTGTC	0.582000								NER				
TRPM4	54795	broad.mit.edu	37	19	49686010	49686010	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:49686010C>T	uc002pmw.2	+	11	1511	c.1439C>T	c.(1438-1440)GCG>GTG	p.A480V	TRPM4_uc010emu.2_Missense_Mutation_p.A480V|TRPM4_uc010yak.1_5'UTR|TRPM4_uc002pmx.2_Missense_Mutation_p.A306V|TRPM4_uc010emv.2_Missense_Mutation_p.A365V|TRPM4_uc010yal.1_Missense_Mutation_p.A126V|TRPM4_uc002pmy.2_5'UTR	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	480	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		TTGGACCAGGCGTCCCACAGC	0.677000												
RRAS	6237	broad.mit.edu	37	19	50138860	50138860	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:50138860G>A	uc002pop.1	-	6	675	c.630C>T	c.(628-630)GGC>GGT	p.G210G		NM_006270	NP_006261	P10301	RRAS_HUMAN	related RAS viral (r-ras) oncogene homolog	210					axon guidance|Ras protein signal transduction|synaptic transmission	intracellular|plasma membrane	GDP binding|GTP binding|GTPase activity|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00114)|GBM - Glioblastoma multiforme(134;0.0206)		GGCAGCCCCCGCCCTTCTTCC	0.567000												
LILRA4	23547	broad.mit.edu	37	19	54849824	54849824	+	Silent	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:54849824T>C	uc002qfj.2	-	3	255	c.198A>G	c.(196-198)TCA>TCG	p.S66S	LILRA4_uc002qfi.2_5'UTR	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	66	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		GCCTCGACATTGAGTTTCCCT	0.527000												
LILRA2	11027	broad.mit.edu	37	19	55086848	55086848	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:55086848C>T	uc002qgg.3	+	5	870	c.781C>T	c.(781-783)CGT>TGT	p.R261C	LILRA2_uc010ern.2_Missense_Mutation_p.R261C|LILRA2_uc002qgf.2_Missense_Mutation_p.R261C|LILRA2_uc010yfe.1_Missense_Mutation_p.R261C|LILRA2_uc010yff.1_Missense_Mutation_p.R249C|LILRA2_uc010ero.2_Missense_Mutation_p.R249C|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	261	Ig-like C2-type 3.|Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		GGAGGGAGAACGTGACTTCCT	0.637000												
ZNF784	147808	broad.mit.edu	37	19	56133410	56133410	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:56133410C>T	uc002qll.1	-	2	693	c.679G>A	c.(679-681)GGC>AGC	p.G227S	ZNF784_uc010etb.1_RNA	NM_203374	NP_976308	Q8NCA9	ZN784_HUMAN	zinc finger protein 784	227	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.105)		CCGCAGATGCCGCAATGGTAT	0.672000												
PEG3	5178	broad.mit.edu	37	19	57326838	57326838	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:57326838T>C	uc002qnu.2	-	7	3323	c.2972A>G	c.(2971-2973)CAT>CGT	p.H991R	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.H962R|PEG3_uc002qnv.2_Missense_Mutation_p.H991R|PEG3_uc002qnw.2_Missense_Mutation_p.H867R|PEG3_uc002qnx.2_Missense_Mutation_p.H865R|PEG3_uc010etr.2_Missense_Mutation_p.H991R	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	991	C2H2-type 5.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CTCCCTATCATGAATCTTCTG	0.502000												
ZBTB45	84878	broad.mit.edu	37	19	59028678	59028678	+	Silent	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:59028678A>G	uc002qtd.2	-	2	655	c.363T>C	c.(361-363)ATT>ATC	p.I121I	ZBTB45_uc002qte.2_Silent_p.I121I|ZBTB45_uc002qtf.2_Silent_p.I121I	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	121					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		CGCGGGCGATAATCTGCGTGC	0.692000											OREG0025700	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
PXDN	7837	broad.mit.edu	37	2	1652415	1652415	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:1652415G>A	uc002qxa.2	-	17	3201	c.3137C>T	c.(3136-3138)ACG>ATG	p.T1046M		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1046					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		CTCTCCCAGCGTCCTCATGCC	0.602000												
CMPK2	129607	broad.mit.edu	37	2	7005402	7005402	+	Silent	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:7005402G>T	uc002qyo.2	-	1	535	c.426C>A	c.(424-426)ACC>ACA	p.T142T	CMPK2_uc010yis.1_Silent_p.T142T|CMPK2_uc010ewv.2_Silent_p.T142T	NM_207315	NP_997198	Q5EBM0	CMPK2_HUMAN	UMP-CMP kinase 2 precursor	142					dTDP biosynthetic process	mitochondrion	ATP binding|cytidylate kinase activity|thymidylate kinase activity|UMP kinase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GCGCTTGCCGGGTGTCAGGGT	0.736000												
GPN1	11321	broad.mit.edu	37	2	27865301	27865301	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:27865301C>T	uc010ymc.1	+	12	909	c.888C>T	c.(886-888)AAC>AAT	p.N296N	GPN1_uc010ezf.2_Silent_p.N270N|GPN1_uc010yma.1_Silent_p.N203N|GPN1_uc010ymb.1_Silent_p.N187N|GPN1_uc010ymd.1_Silent_p.N177N|GPN1_uc010yme.1_Missense_Mutation_p.T283M|GPN1_uc010ezg.1_Silent_p.N177N	NM_007266	NP_009197	Q9HCN4	GPN1_HUMAN	GPN-loop GTPase 1 isoform a	282						cytoplasm	GTP binding|nucleoside-triphosphatase activity|protein binding				0						TACAGGCCAACGCAGAGAGCC	0.428000												
BIRC6	57448	broad.mit.edu	37	2	32658787	32658787	+	Silent	SNP	C	C	T	rs36065012	byFrequency	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:32658787C>T	uc010ezu.2	+	13	3458	c.3324C>T	c.(3322-3324)TTC>TTT	p.F1108F		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	1108					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					ACTTCAAATTCGTTTTGAACT	0.368000												
VIT	5212	broad.mit.edu	37	2	36994320	36994320	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:36994320A>G	uc002rpl.2	+	7	792	c.571A>G	c.(571-573)ACT>GCT	p.T191A	VIT_uc010ynf.1_Intron|VIT_uc002rpm.2_Missense_Mutation_p.T184A|VIT_uc010ezv.2_Missense_Mutation_p.T184A|VIT_uc010ezw.2_Missense_Mutation_p.T184A	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	191						proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				TCTGGCTGTCACTGTAGCTGT	0.562000												
PRKD3	23683	broad.mit.edu	37	2	37480415	37480415	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:37480415C>T	uc002rqd.2	-	18	3133	c.2578G>A	c.(2578-2580)GCT>ACT	p.A860T		NM_005813	NP_005804	O94806	KPCD3_HUMAN	protein kinase D3	860					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(2)|ovary(1)|central_nervous_system(1)	4		all_hematologic(82;0.21)				TCCCAGCGAGCATCATCACTT	0.383000												
PKDCC	91461	broad.mit.edu	37	2	42280399	42280399	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:42280399G>A	uc002rsg.2	+	2	839	c.660G>A	c.(658-660)CAG>CAA	p.Q220Q		NM_138370	NP_612379	Q504Y2	PKDCC_HUMAN	protein kinase-like protein SgK493	220	Protein kinase.				cell differentiation|embryonic digestive tract development|lung alveolus development|negative regulation of Golgi to plasma membrane protein transport|ossification|palate development|positive regulation of bone mineralization|positive regulation of chondrocyte differentiation|protein transport	Golgi apparatus	ATP binding|protein kinase activity			breast(1)	1						ACTGCTACCAGGACAGCGAGG	0.607000												
ALMS1	7840	broad.mit.edu	37	2	73677769	73677769	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:73677769G>A	uc002sje.1	+	10	4229	c.4118G>A	c.(4117-4119)GGC>GAC	p.G1373D	ALMS1_uc002sjf.1_Missense_Mutation_p.G1329D|ALMS1_uc002sjg.2_Missense_Mutation_p.G759D|ALMS1_uc002sjh.1_Missense_Mutation_p.G759D	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1371	18.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CAGACAACTGGCACACCAACT	0.453000												
ST3GAL5	8869	broad.mit.edu	37	2	86073607	86073607	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:86073607C>T	uc002sqq.1	-	5	871	c.742G>A	c.(742-744)GCA>ACA	p.A248T	ST3GAL5_uc010fgq.1_Missense_Mutation_p.A120T|ST3GAL5_uc002sqp.1_Missense_Mutation_p.A225T	NM_003896	NP_003887	Q9UNP4	SIAT9_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	248	Lumenal (Potential).				ganglioside biosynthetic process|protein glycosylation	integral to Golgi membrane|integral to plasma membrane	lactosylceramide alpha-2,3-sialyltransferase activity|neolactotetraosylceramide alpha-2,3-sialyltransferase activity				0						GACAGTGGTGCGCCCTCTGGA	0.348000												
TEKT4	150483	broad.mit.edu	37	2	95537373	95537373	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:95537373G>A	uc002stw.1	+	1	142	c.49G>A	c.(49-51)GTG>ATG	p.V17M	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	17					cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						AGAGTACGACGTGGCCCGTAA	0.667000												
MGAT4A	11320	broad.mit.edu	37	2	99294914	99294914	+	Nonsense_Mutation	SNP	G	G	A	rs141026005		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:99294914G>A	uc002sze.2	-	3	429	c.115C>T	c.(115-117)CGA>TGA	p.R39*	MGAT4A_uc010fil.2_Translation_Start_Site	NM_012214	NP_036346	Q9UM21	MGT4A_HUMAN	alpha-1,3-mannosyl-glycoprotein	39	Lumenal (Potential).|Potential.				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			skin(1)	1						AGGAATTCTCGTTGATAAGCA	0.333000												
EIF5B	9669	broad.mit.edu	37	2	99999375	99999375	+	Silent	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:99999375A>G	uc002tab.2	+	14	2446	c.2262A>G	c.(2260-2262)GCA>GCG	p.A754A		NM_015904	NP_056988	O60841	IF2P_HUMAN	eukaryotic translation initiation factor 5B	754					regulation of translational initiation	cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			ovary(2)|pancreas(1)	3						TCATTGTTGCACTCAATAAGG	0.303000												
ST6GAL2	84620	broad.mit.edu	37	2	107460225	107460225	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:107460225G>A	uc002tdq.2	-	2	328	c.209C>T	c.(208-210)CCG>CTG	p.P70L	ST6GAL2_uc002tdr.2_Missense_Mutation_p.P70L|ST6GAL2_uc002tds.3_Missense_Mutation_p.P70L	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	70	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GCCCCCAGGCGGGGAGGGCTC	0.706000												
RANBP2	5903	broad.mit.edu	37	2	109388223	109388223	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:109388223C>T	uc002tem.3	+	21	8042	c.7916C>T	c.(7915-7917)ACT>ATT	p.T2639I		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2639	Required for E3 SUMO-ligase activity.|1.|Interaction with UBE2I.|2 X 50 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TATGAACTAACTCCAACCGCT	0.378000												
TMEM177	80775	broad.mit.edu	37	2	120439107	120439107	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:120439107C>T	uc010flg.1	+	2	1151	c.678C>T	c.(676-678)GCC>GCT	p.A226A	TMEM177_uc002tme.2_Intron|TMEM177_uc002tmc.1_Silent_p.A226A|TMEM177_uc002tmd.2_Silent_p.A226A|TMEM177_uc010flh.2_Intron	NM_001105198	NP_001098668	Q53S58	TM177_HUMAN	transmembrane protein 177	226						integral to membrane				ovary(1)	1	Colorectal(110;0.196)					TCACTCATGCCGTGGAGTCCT	0.612000												
CNTNAP5	129684	broad.mit.edu	37	2	125262112	125262112	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:125262112C>T	uc002tno.2	+	8	1667	c.1303C>T	c.(1303-1305)CGC>TGC	p.R435C	CNTNAP5_uc010flu.2_Missense_Mutation_p.R436C	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	435	Laminin G-like 2.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		AATGACAGAACGCGTAGCTGA	0.507000												
FAM123C	205147	broad.mit.edu	37	2	131522032	131522032	+	Missense_Mutation	SNP	G	G	A	rs145412369	byFrequency	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:131522032G>A	uc002trw.2	+	2	2577	c.2387G>A	c.(2386-2388)CGC>CAC	p.R796H	FAM123C_uc010fmv.2_Missense_Mutation_p.R796H|FAM123C_uc010fms.1_Missense_Mutation_p.R796H|FAM123C_uc010fmt.1_Missense_Mutation_p.R796H|FAM123C_uc010fmu.1_Missense_Mutation_p.R796H	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	796										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		TCTGAGCCCCGCTCAGCCCCT	0.667000												
LRP1B	53353	broad.mit.edu	37	2	141283810	141283810	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:141283810G>T	uc002tvj.1	-	48	8844	c.7872C>A	c.(7870-7872)AAC>AAA	p.N2624K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2624	Extracellular (Potential).|LDL-receptor class A 13.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCTTACTGCAGTTCTTTTCAT	0.423000										TSP Lung(27;0.18)		
LRP1B	53353	broad.mit.edu	37	2	141751623	141751623	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:141751623C>T	uc002tvj.1	-	16	3557	c.2585G>A	c.(2584-2586)TGG>TAG	p.W862*	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	862	Extracellular (Potential).|LDL-receptor class A 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATCACATTTCCACCGAGCTTG	0.428000										TSP Lung(27;0.18)		
GTDC1	79712	broad.mit.edu	37	2	144764988	144764988	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:144764988C>A	uc002tvp.2	-	7	915	c.636G>T	c.(634-636)GAG>GAT	p.E212D	GTDC1_uc002tvo.2_Missense_Mutation_p.E212D|GTDC1_uc002tvq.2_Intron|GTDC1_uc002tvr.2_Missense_Mutation_p.E212D|GTDC1_uc010fnn.2_Missense_Mutation_p.E212D|GTDC1_uc002tvs.2_Missense_Mutation_p.E180D|GTDC1_uc010fno.2_Missense_Mutation_p.E83D|GTDC1_uc002tvt.1_Missense_Mutation_p.E212D	NM_001006636	NP_001006637	Q4AE62	GTDC1_HUMAN	glycosyltransferase-like domain containing 1	212					biosynthetic process		transferase activity, transferring glycosyl groups			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.0914)		TCAATAAATCCTCTGAATCTC	0.423000												
CHRNA1	1134	broad.mit.edu	37	2	175613394	175613394	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:175613394G>A	uc002ujd.2	-	9	1309	c.1231C>T	c.(1231-1233)CTG>TTG	p.L411L	uc002uiw.2_Intron|CHRNA1_uc002uje.2_Silent_p.L386L	NM_001039523	NP_001034612	P02708	ACHA_HUMAN	nicotinic cholinergic receptor alpha 1 isoform a	411	Cytoplasmic.				muscle cell homeostasis|neuromuscular junction development|neuromuscular process|neuromuscular synaptic transmission|neuron homeostasis|regulation of action potential in neuron|skeletal muscle contraction|skeletal muscle tissue growth	cell junction|cell surface|neuromuscular junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TGTTTGATCAGGGGAGAGTGG	0.478000											OREG0015079	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
HOXD13	3239	broad.mit.edu	37	2	176958221	176958221	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:176958221G>A	uc002ukf.1	+	1	690	c.603G>A	c.(601-603)CAG>CAA	p.Q201Q		NM_000523	NP_000514	P35453	HXD13_HUMAN	homeobox D13	201					skeletal system development|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0526)|READ - Rectum adenocarcinoma(9;0.0678)		GCCCTTACCAGCACGTGCCCG	0.637000			T	NUP98	AML*							
TTN	7273	broad.mit.edu	37	2	179587840	179587840	+	Silent	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:179587840C>A	uc010zfg.1	-	72	18386	c.18162G>T	c.(18160-18162)GGG>GGT	p.G6054G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G2715G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6981							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGAATACTGCCCTGCATCTC	0.383000												
INPP1	3628	broad.mit.edu	37	2	191227411	191227411	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:191227411G>T	uc002ury.3	+	4	963	c.263G>T	c.(262-264)TGG>TTG	p.W88L	INPP1_uc010fsb.2_Missense_Mutation_p.W88L|INPP1_uc002urx.3_Missense_Mutation_p.W88L	NM_001128928	NP_001122400	P49441	INPP_HUMAN	inositol polyphosphate-1-phosphatase	88					signal transduction		inositol-1,4-bisphosphate 1-phosphatase activity|metal ion binding			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.000286)|Epithelial(96;0.0186)|all cancers(119;0.057)		Lithium(DB01356)	ACTAATGACTGGGGTAAGTAT	0.308000												
HECW2	57520	broad.mit.edu	37	2	197172768	197172768	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:197172768C>T	uc002utm.1	-	11	2659	c.2476G>A	c.(2476-2478)GTG>ATG	p.V826M	HECW2_uc002utl.1_Missense_Mutation_p.V470M	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	826	Interaction with TP73.|WW 1.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						ACGTGATCCACGTAGAAGATC	0.552000												
ALS2	57679	broad.mit.edu	37	2	202626159	202626159	+	Silent	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:202626159G>T	uc002uyo.2	-	4	914	c.558C>A	c.(556-558)GCC>GCA	p.A186A	ALS2_uc002uyp.3_Silent_p.A186A|ALS2_uc002uyq.2_Silent_p.A186A|ALS2_uc002uyr.2_Silent_p.A186A	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	186	RCC1 3.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						TCACTGGGAAGGCAGTGGTAA	0.527000												
CPS1	1373	broad.mit.edu	37	2	211521259	211521259	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:211521259A>G	uc002vee.3	+	30	3701	c.3569A>G	c.(3568-3570)CAT>CGT	p.H1190R	CPS1_uc010fur.2_Missense_Mutation_p.H1196R|CPS1_uc010fus.2_Missense_Mutation_p.H739R	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1190	ATP-grasp 2.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GTTATCTCTCATGCCATCTCT	0.458000												
IGFBP5	3488	broad.mit.edu	37	2	217543602	217543602	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:217543602C>T	uc002vgj.3	-	2	1312	c.538G>A	c.(538-540)GCA>ACA	p.A180T		NM_000599	NP_000590	P24593	IBP5_HUMAN	insulin-like growth factor binding protein 5	180					negative regulation of insulin-like growth factor receptor signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell proliferation|negative regulation of translation|signal transduction		insulin-like growth factor I binding				0		Renal(323;0.0822)		Epithelial(149;2.1e-06)|all cancers(144;0.000165)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ATCTCAGGTGCAGAGATGATC	0.547000												
SLC11A1	6556	broad.mit.edu	37	2	219247695	219247695	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:219247695C>A	uc002vhv.2	+	2	360	c.20C>A	c.(19-21)CCC>CAC	p.P7H	SLC11A1_uc010zkb.1_Missense_Mutation_p.P7H|SLC11A1_uc010fvp.1_Missense_Mutation_p.P7H|SLC11A1_uc010fvq.1_Intron|SLC11A1_uc010zkc.1_5'UTR|SLC11A1_uc002vhu.1_5'UTR|SLC11A1_uc002vhw.2_5'UTR	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	7	Pro/Ser-rich.|Cytoplasmic (Potential).				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GACAAGGGTCCCCAAAGGCTA	0.517000												
IRS1	3667	broad.mit.edu	37	2	227662442	227662442	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:227662442C>T	uc002voh.3	-	1	1065	c.1013G>A	c.(1012-1014)CGC>CAC	p.R338H		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	338	Ser-rich.				fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		CGAGGCTGGGCGGGACATGGT	0.711000											OREG0015248	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
SLC19A3	80704	broad.mit.edu	37	2	228552892	228552892	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:228552892A>G	uc002vpi.2	-	5	1393	c.1304T>C	c.(1303-1305)GTC>GCC	p.V435A	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Missense_Mutation_p.V431A	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	435	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	CTGAATGCTGACTGGCAAGTT	0.393000												
SLC19A3	80704	broad.mit.edu	37	2	228563510	228563510	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:228563510C>T	uc002vpi.2	-	3	1010	c.921G>A	c.(919-921)GCG>GCA	p.A307A	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Silent_p.A303A	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	307	Extracellular (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	CTTGGGATGGCGCCTTGTAAT	0.448000												
KIF1A	547	broad.mit.edu	37	2	241659198	241659198	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:241659198G>A	uc002vzy.2	-	44	4857	c.4711C>T	c.(4711-4713)CGA>TGA	p.R1571*	KIF1A_uc010fzk.2_Nonsense_Mutation_p.R1672*|KIF1A_uc002vzw.2_Nonsense_Mutation_p.R232*|KIF1A_uc002vzx.2_Nonsense_Mutation_p.R298*	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1571					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CACCTGACTCGGATCTCCTGG	0.662000												
STK35	140901	broad.mit.edu	37	20	2097952	2097952	+	Silent	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:2097952T>C	uc010gak.2	+	3	1533	c.1533T>C	c.(1531-1533)GCT>GCC	p.A511A	STK35_uc010zpu.1_Intron|STK35_uc002wfw.3_Silent_p.A378A	NM_080836	NP_543026	Q8TDR2	STK35_HUMAN	serine/threonine kinase 35	511	Protein kinase.					cytoplasm|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						ATATGTTAGCTGCTAACCCAC	0.483000												
TGM3	7053	broad.mit.edu	37	20	2297997	2297997	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:2297997G>A	uc002wfx.3	+	7	946	c.849G>A	c.(847-849)GCG>GCA	p.A283A		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	283					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	GACTTGCAGCGCTGCGGTCTT	0.577000												
CENPB	1059	broad.mit.edu	37	20	3766349	3766349	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:3766349T>C	uc002wjk.2	-	1	989	c.782A>G	c.(781-783)TAC>TGC	p.Y261C	CDC25B_uc010zqk.1_5'Flank|CDC25B_uc010zql.1_5'Flank|CDC25B_uc010zqm.1_5'Flank	NM_001810	NP_001801	P07199	CENPB_HUMAN	centromere protein B	261					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|satellite DNA binding				0						GTTGGCGGTGTAGTCGCAGGG	0.682000												
ADRA1D	146	broad.mit.edu	37	20	4228498	4228498	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:4228498C>T	uc002wkr.2	-	1	1162	c.1107G>A	c.(1105-1107)CCG>CCA	p.P369P		NM_000678	NP_000669	P25100	ADA1D_HUMAN	alpha-1D-adrenergic receptor	369	Helical; Name=6; (By similarity).				cell proliferation|cell-cell signaling|DNA metabolic process|G-protein signaling, coupled to cAMP nucleotide second messenger|multicellular organismal development|positive regulation of cell proliferation	integral to plasma membrane	alpha1-adrenergic receptor activity				0					Alfuzosin(DB00346)|Bethanidine(DB00217)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Doxazosin(DB00590)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Methotrimeprazine(DB01403)|Norepinephrine(DB00368)|Promazine(DB00420)|Propericiazine(DB01608)|Propiomazine(DB00777)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)	ACTCACCGAGCGGCAGGACAA	0.627000												
ZNF133	7692	broad.mit.edu	37	20	18296519	18296519	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:18296519G>A	uc010gcq.2	+	5	1329	c.1024G>A	c.(1024-1026)GTG>ATG	p.V342M	ZNF133_uc010zrv.1_Missense_Mutation_p.V345M|ZNF133_uc010zrw.1_Missense_Mutation_p.V279M|ZNF133_uc010gcr.2_Missense_Mutation_p.V342M|ZNF133_uc010zrx.1_Missense_Mutation_p.V247M|ZNF133_uc002wql.3_Missense_Mutation_p.V341M|ZNF133_uc010gcs.2_Missense_Mutation_p.V341M|ZNF133_uc010zry.1_Missense_Mutation_p.V247M|ZNF133_uc002wqm.2_Missense_Mutation_p.V342M	NM_003434	NP_003425	P52736	ZN133_HUMAN	zinc finger protein 133	342	C2H2-type 5.					nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)	2						GTCAGCTGTCGTGAGACACCA	0.552000												
NKX2-2	4821	broad.mit.edu	37	20	21492887	21492887	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:21492887G>A	uc002wsi.2	-	2	853	c.496C>T	c.(496-498)CGC>TGC	p.R166C		NM_002509	NP_002500	O95096	NKX22_HUMAN	NK2 transcription factor related, locus 2	166	Homeobox.				brain development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	chromatin binding|core promoter proximal region DNA binding|transcription coactivator activity			pancreas(1)|skin(1)	2						GGCGTGAGGCGGATGAGGCTG	0.652000												
C20orf112	140688	broad.mit.edu	37	20	31044128	31044128	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:31044128C>T	uc002wxu.3	-	3	337	c.180G>A	c.(178-180)ACG>ACA	p.T60T	C20orf112_uc010gec.2_5'UTR	NM_080616	NP_542183	Q96MY1	CT112_HUMAN	hypothetical protein LOC140688	60											0						GGTCGCCCTGCGTGCTGCTCG	0.647000												
RALGAPB	57148	broad.mit.edu	37	20	37198625	37198625	+	Missense_Mutation	SNP	G	G	A	rs147384010	byFrequency	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:37198625G>A	uc002xiw.2	+	27	4306	c.4049G>A	c.(4048-4050)CGC>CAC	p.R1350H	RALGAPB_uc002xix.2_Missense_Mutation_p.R1347H|RALGAPB_uc002xiy.1_Intron|RALGAPB_uc002xiz.2_Missense_Mutation_p.R1129H	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	1350	Rap-GAP.				activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						TGGGTGGAACGCTATGATGAT	0.468000												
ZSWIM1	90204	broad.mit.edu	37	20	44512182	44512182	+	Silent	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:44512182A>G	uc010ghi.2	+	2	1064	c.951A>G	c.(949-951)AAA>AAG	p.K317K	ZSWIM1_uc010zxh.1_Silent_p.K190K	NM_080603	NP_542170	Q9BR11	ZSWM1_HUMAN	zinc finger, SWIM-type containing 1	317							zinc ion binding			skin(1)	1		Myeloproliferative disorder(115;0.028)				AAAGCCCCAAACTGGAGCAGC	0.572000												
CDH22	64405	broad.mit.edu	37	20	44806663	44806663	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:44806663T>C	uc002xrm.2	-	10	2238	c.1837A>G	c.(1837-1839)ACC>GCC	p.T613A	CDH22_uc010ghk.1_Missense_Mutation_p.T613A	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	613	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				AAGGCCGTGGTGTTGCAGGAC	0.652000												
ADNP	23394	broad.mit.edu	37	20	49508906	49508906	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:49508906G>A	uc002xvt.1	-	5	2690	c.2345C>T	c.(2344-2346)ACC>ATC	p.T782I	ADNP_uc002xvu.1_Missense_Mutation_p.T782I	NM_015339	NP_056154	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector	782	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						TTCTCTCCTGGTGGGATAGGG	0.418000												
NFATC2	4773	broad.mit.edu	37	20	50133423	50133423	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:50133423C>T	uc002xwd.2	-	3	1452	c.1232G>A	c.(1231-1233)CGG>CAG	p.R411Q	NFATC2_uc002xwc.2_Missense_Mutation_p.R411Q|NFATC2_uc010zyv.1_Missense_Mutation_p.R192Q|NFATC2_uc010zyw.1_Missense_Mutation_p.R192Q|NFATC2_uc010zyx.1_Missense_Mutation_p.R391Q|NFATC2_uc010zyy.1_Missense_Mutation_p.R192Q|NFATC2_uc010zyz.1_Missense_Mutation_p.R192Q|NFATC2_uc002xwe.2_Missense_Mutation_p.R391Q	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	411	RHD.				B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					CACCTCGATCCGCAGCTCGTA	0.577000												
DIDO1	11083	broad.mit.edu	37	20	61512787	61512787	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:61512787G>A	uc002ydr.1	-	16	4785	c.4521C>T	c.(4519-4521)GTC>GTT	p.V1507V	DIDO1_uc002yds.1_Silent_p.V1507V	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1507					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TGGAGACCCCGACGGCGGCCC	0.572000												
PRIC285	85441	broad.mit.edu	37	20	62200595	62200595	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:62200595C>T	uc002yfm.2	-	5	1886	c.994G>A	c.(994-996)GTG>ATG	p.V332M	PRIC285_uc002yfl.1_5'Flank	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	332					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CCCGAGGCCACGCTGCTGCGG	0.662000												
KRTAP13-2	337959	broad.mit.edu	37	21	31744257	31744257	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr21:31744257C>T	uc002ynz.3	-	1	301	c.275G>A	c.(274-276)TGC>TAC	p.C92Y		NM_181621	NP_853652	Q52LG2	KR132_HUMAN	keratin associated protein 13-2	92	5 X 10 AA approximate repeats.|5.					intermediate filament					0						AGTCGTCTTGCAAGGACTGCA	0.612000												
KRTAP6-3	337968	broad.mit.edu	37	21	31964786	31964786	+	Missense_Mutation	SNP	A	A	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr21:31964786A>T	uc002yom.2	+	1	28	c.22A>T	c.(22-24)ATG>TTG	p.M8L		NM_181605	NP_853636			keratin associated protein 6-3												0						AACCAACACCATGTGTGGCAG	0.353000												
DSCAM	1826	broad.mit.edu	37	21	41648155	41648155	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr21:41648155C>A	uc002yyq.1	-	11	2677	c.2225G>T	c.(2224-2226)CGA>CTA	p.R742L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	742	Extracellular (Potential).|Ig-like C2-type 8.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AACTTGGATTCGGCCATTTAG	0.512000												
ABCG1	9619	broad.mit.edu	37	21	43711671	43711671	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr21:43711671G>A	uc002zaq.2	+	13	1700	c.1594G>A	c.(1594-1596)GTG>ATG	p.V532M	ABCG1_uc002zan.2_Missense_Mutation_p.V522M|ABCG1_uc002zam.2_Missense_Mutation_p.V498M|ABCG1_uc002zao.2_Missense_Mutation_p.V517M|ABCG1_uc002zap.2_Missense_Mutation_p.V520M|ABCG1_uc002zar.2_Missense_Mutation_p.V531M|ABCG1_uc011aev.1_Missense_Mutation_p.V543M|ABCG1_uc010gpb.1_Missense_Mutation_p.R172H	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	532	Extracellular (Potential).|ABC transmembrane type-2.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	GTCCGACGCCGTGCGCTTTGT	0.662000												
KRTAP10-5	386680	broad.mit.edu	37	21	45999669	45999669	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr21:45999669G>A	uc002zfl.1	-	1	813	c.787C>T	c.(787-789)CGC>TGC	p.R263C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	263						keratin filament					0						CACGCGGGGCGGCAGAGGAGG	0.711000												
KRTAP10-5	386680	broad.mit.edu	37	21	46000448	46000448	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr21:46000448G>A	uc002zfl.1	-	1	34	c.8C>T	c.(7-9)GCG>GTG	p.A3V	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	3						keratin filament					0						CATGGTGCACGCGGCCATGCT	0.527000												
PCNT	5116	broad.mit.edu	37	21	47858188	47858188	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr21:47858188A>G	uc002zji.3	+	41	9318	c.9211A>G	c.(9211-9213)AGA>GGA	p.R3071G	PCNT_uc002zjj.2_Missense_Mutation_p.R2874G	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	3071	Interaction with NEK2.|Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GGAGCTGAGCAGAGCCGTGTC	0.542000												
DGCR14	8220	broad.mit.edu	37	22	19124873	19124873	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:19124873G>A	uc002zou.2	-	8	1035	c.998C>T	c.(997-999)ACG>ATG	p.T333M	DGCR14_uc002zot.2_Missense_Mutation_p.T254M|DGCR14_uc002zov.2_RNA	NM_022719	NP_073210	Q96DF8	DGC14_HUMAN	DiGeorge syndrome critical region protein 14	333					nervous system development	catalytic step 2 spliceosome				ovary(1)	1	Colorectal(54;0.0993)					CACGTAGGGCGTTTCCGACCC	0.597000												
HIC2	23119	broad.mit.edu	37	22	21799578	21799578	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:21799578G>A	uc002zur.3	+	3	624	c.394G>A	c.(394-396)GCA>ACA	p.A132T	HIC2_uc002zus.3_Missense_Mutation_p.A132T	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	132					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				GCCCGAGTTGGCAGCCCTCTG	0.692000												
CYTSA	23384	broad.mit.edu	37	22	24734371	24734371	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:24734371G>A	uc002zzw.2	+	10	2885	c.2578G>A	c.(2578-2580)GCT>ACT	p.A860T	CYTSA_uc002zzv.3_Missense_Mutation_p.A860T|CYTSA_uc011ajq.1_Missense_Mutation_p.A860T	NM_015330	NP_056145	Q69YQ0	CYTSA_HUMAN	cytospin A	860	Poly-Ala.				cell cycle|cell division						0						CCCTGCTGCAGCTGCAATTCC	0.403000												
MN1	4330	broad.mit.edu	37	22	28193118	28193118	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:28193118C>T	uc003adj.2	-	1	4369	c.3414G>A	c.(3412-3414)CCG>CCA	p.P1138P		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	1138							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						TGCTGCTCGTCGGGGTGCGGA	0.687000			T	ETV6	AML|meningioma							
MN1	4330	broad.mit.edu	37	22	28193441	28193441	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:28193441C>T	uc003adj.2	-	1	4046	c.3091G>A	c.(3091-3093)GGG>AGG	p.G1031R		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	1031							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						GACTTGGCCCCGCCGTCCAGG	0.647000			T	ETV6	AML|meningioma							
THOC5	8563	broad.mit.edu	37	22	29907262	29907262	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:29907262C>T	uc003afr.2	-	20	2156	c.1821G>A	c.(1819-1821)GTG>GTA	p.V607V	THOC5_uc003afq.2_Silent_p.V268V|THOC5_uc003afs.2_Silent_p.V607V|THOC5_uc003aft.2_Silent_p.V607V|THOC5_uc003afu.2_Silent_p.V607V|THOC5_uc010gvo.2_Silent_p.V351V	NM_001002878	NP_001002878	Q13769	THOC5_HUMAN	THO complex 5	607					intronless viral mRNA export from host nucleus|monocyte differentiation|mRNA processing|primitive hemopoiesis|RNA splicing	cytoplasm|intermediate filament cytoskeleton|THO complex part of transcription export complex	protein binding|RNA binding			breast(3)	3						CCTTGTAGCACACATTGACTT	0.592000												
SLC5A4	6527	broad.mit.edu	37	22	32629011	32629011	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:32629011T>C	uc003ami.2	-	9	898	c.896A>G	c.(895-897)CAG>CGG	p.Q299R		NM_014227	NP_055042	Q9NY91	SC5A4_HUMAN	solute carrier family 5 (low affinity glucose	299	Cytoplasmic (Potential).				carbohydrate transport|sodium ion transport	integral to membrane	symporter activity				0						CAGGCAGCGCTGCACAATGAC	0.532000												
MCM5	4174	broad.mit.edu	37	22	35802675	35802675	+	Missense_Mutation	SNP	C	C	T	rs142715814		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:35802675C>T	uc003anu.3	+	5	647	c.553C>T	c.(553-555)CGC>TGC	p.R185C	MCM5_uc010gwr.2_5'UTR|MCM5_uc003anv.3_Missense_Mutation_p.R142C|MCM5_uc010gws.1_5'Flank	NM_006739	NP_006730	P33992	MCM5_HUMAN	minichromosome maintenance complex component 5	185					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)	1						CATTGCCATGCGCCCTGGCCT	0.627000												
MCM5	4174	broad.mit.edu	37	22	35811891	35811891	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:35811891C>T	uc003anu.3	+	10	1367	c.1273C>T	c.(1273-1275)CGG>TGG	p.R425W	MCM5_uc010gwr.2_Missense_Mutation_p.R234W|MCM5_uc003anv.3_Missense_Mutation_p.R382W|MCM5_uc010gws.1_RNA|MCM5_uc003anw.1_Missense_Mutation_p.R209W	NM_006739	NP_006730	P33992	MCM5_HUMAN	minichromosome maintenance complex component 5	425	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)	1						CCCTTCGTCCCGGAATTTCAT	0.592000												
CBX6	23466	broad.mit.edu	37	22	39267747	39267747	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:39267747C>T	uc003awl.2	-	3	192	c.129G>A	c.(127-129)GAG>GAA	p.E43E	CBX6_uc003awm.1_Silent_p.E43E	NM_014292	NP_055107	O95503	CBX6_HUMAN	chromobox homolog 6	43	Chromo.				chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	PcG protein complex					0	Melanoma(58;0.04)					TCTCCTCGGGCTCCCAAGTGC	0.622000												
L3MBTL2	83746	broad.mit.edu	37	22	41609927	41609927	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:41609927C>T	uc003azo.2	+	3	347	c.293C>T	c.(292-294)ACA>ATA	p.T98I	L3MBTL2_uc010gyi.1_Missense_Mutation_p.T7I|L3MBTL2_uc003azn.2_RNA|uc003azp.1_RNA	NM_031488	NP_113676	Q969R5	LMBL2_HUMAN	l(3)mbt-like 2	98	FCS-type.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	methylated histone residue binding|transcription corepressor activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3						ATCGTGGGTACAAGGGAAGCC	0.507000												
IQSEC1	9922	broad.mit.edu	37	3	12978181	12978181	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:12978181C>T	uc003bxt.2	-	3	386	c.377G>A	c.(376-378)CGA>CAA	p.R126Q	IQSEC1_uc003bxu.3_Missense_Mutation_p.R4Q|IQSEC1_uc011auw.1_Missense_Mutation_p.R112Q	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	126					regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						CCCATACTTTCGTTCTAGCAT	0.577000												
FBLN2	2199	broad.mit.edu	37	3	13661294	13661294	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:13661294C>T	uc011avb.1	+	8	2243	c.2118C>T	c.(2116-2118)CCC>CCT	p.P706P	FBLN2_uc011auz.1_Silent_p.P732P|FBLN2_uc011ava.1_Silent_p.P706P|FBLN2_uc011avc.1_Silent_p.P706P	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	706	EGF-like 2.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			CCTGTTTTCCCGGCTATGCCA	0.587000												
TRANK1	9881	broad.mit.edu	37	3	36888771	36888771	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:36888771G>A	uc003cgj.2	-	6	3474	c.3172C>T	c.(3172-3174)CGG>TGG	p.R1058W		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1608					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						ACCAATGGCCGGTTTTCCTCT	0.443000												
VILL	50853	broad.mit.edu	37	3	38035889	38035889	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:38035889C>T	uc003chj.2	+	4	559	c.273C>T	c.(271-273)ACC>ACT	p.T91T	VILL_uc003chk.1_Silent_p.T91T|VILL_uc003chl.2_Silent_p.T91T|VILL_uc010hgu.2_5'UTR	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	91					actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		GGGGCCAGACCGTGCTGCACC	0.711000												
CYB561D2	11068	broad.mit.edu	37	3	50390758	50390758	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:50390758C>T	uc003dak.2	+	3	828	c.252C>T	c.(250-252)CGC>CGT	p.R84R	NPRL2_uc003dai.1_5'Flank|NPRL2_uc003daj.1_5'Flank|CYB561D2_uc003dal.2_Silent_p.R84R|CYB561D2_uc003dam.2_Silent_p.R84R	NM_007022	NP_008953	O14569	C56D2_HUMAN	cytochrome b-561 domain containing 2	84	Cytochrome b561.				electron transport chain|transport	integral to membrane	metal ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		GCCGAGCACGCTGCCACTGGG	0.597000												
RAD54L2	23132	broad.mit.edu	37	3	51669622	51669622	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:51669622C>T	uc011bdt.1	+	9	1281	c.1156C>T	c.(1156-1158)CGT>TGT	p.R386C	RAD54L2_uc003dbh.2_5'UTR|RAD54L2_uc011bdu.1_Missense_Mutation_p.R80C|RAD54L2_uc003dbj.2_5'UTR	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	386	Helicase ATP-binding.					nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		GATGGCATCTCGTGCTAAAGT	0.458000												
CADM2	253559	broad.mit.edu	37	3	85932472	85932472	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:85932472C>T	uc003dqj.2	+	3	869	c.243C>T	c.(241-243)CGC>CGT	p.R81R	CADM2_uc003dqk.2_Silent_p.R90R|CADM2_uc003dql.2_Silent_p.R83R	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	81	Ig-like V-type.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		AGCTGGTTCGCGCTTCCTGGC	0.373000												
COL8A1	1295	broad.mit.edu	37	3	99514765	99514765	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:99514765G>A	uc003dtg.1	+	5	2265	c.2020G>A	c.(2020-2022)GTG>ATG	p.V674M	COL8A1_uc003dth.1_Missense_Mutation_p.V674M|COL8A1_uc003dti.1_Missense_Mutation_p.V675M	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	674	C1q.|Nonhelical region (NC1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GGGGGGCAACGTGTGGGTTGC	0.537000												
BBX	56987	broad.mit.edu	37	3	107517482	107517482	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:107517482C>T	uc010hpr.2	+	16	2793	c.2466C>T	c.(2464-2466)AGC>AGT	p.S822S	BBX_uc003dwk.3_Silent_p.S792S|BBX_uc003dwl.3_Missense_Mutation_p.A486V|BBX_uc003dwm.3_Silent_p.S792S|BBX_uc003dwo.3_Missense_Mutation_p.A142V	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	822					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			TGGTGGGCAGCCAAAAGAGAA	0.463000												
PHLDB2	90102	broad.mit.edu	37	3	111603826	111603826	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:111603826A>G	uc010hqa.2	+	2	1313	c.902A>G	c.(901-903)TAC>TGC	p.Y301C	PHLDB2_uc003dyc.2_Missense_Mutation_p.Y328C|PHLDB2_uc003dyd.2_Missense_Mutation_p.Y301C|PHLDB2_uc003dyg.2_Missense_Mutation_p.Y301C|PHLDB2_uc003dyh.2_Missense_Mutation_p.Y301C|PHLDB2_uc003dye.3_Missense_Mutation_p.Y301C|PHLDB2_uc003dyf.3_Missense_Mutation_p.Y301C	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	301						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						AATGACAATTACCTTAATTTT	0.433000												
NR1I2	8856	broad.mit.edu	37	3	119533867	119533867	+	Missense_Mutation	SNP	C	C	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:119533867C>G	uc003edj.2	+	6	2675	c.836C>G	c.(835-837)GCC>GGC	p.A279G	NR1I2_uc003edi.2_Missense_Mutation_p.A242G|NR1I2_uc003edk.2_Missense_Mutation_p.A318G|NR1I2_uc003edl.2_Missense_Mutation_p.A167G	NM_003889	NP_003880	O75469	NR1I2_HUMAN	nuclear receptor subfamily 1, group I, member 2	279	Ligand-binding.				drug export|exogenous drug catabolic process|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid metabolic process|xenobiotic metabolic process|xenobiotic transport	nucleoplasm	drug binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(114;0.175)	Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Rifampin(DB01045)|Vitamin E(DB00163)	CTGAAGGGGGCCGCTTTCGAG	0.607000												
DIRC2	84925	broad.mit.edu	37	3	122545714	122545714	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:122545714C>T	uc003efw.3	+	3	644	c.505C>T	c.(505-507)CTC>TTC	p.L169F	DIRC2_uc010hrl.2_RNA|DIRC2_uc010hrm.2_Missense_Mutation_p.L7F	NM_032839	NP_116228	Q96SL1	DIRC2_HUMAN	disrupted in renal carcinoma 2	169	Helical; (Potential).				transport	integral to membrane					0				GBM - Glioblastoma multiforme(114;0.0614)		AGCACCATTTCTCTCTACGAC	0.423000												
ZNF148	7707	broad.mit.edu	37	3	125007067	125007067	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:125007067G>A	uc003ehx.3	-	5	825	c.339C>T	c.(337-339)AGC>AGT	p.S113S	ZNF148_uc003ehz.3_Silent_p.S113S|ZNF148_uc010hsa.2_Silent_p.S113S|ZNF148_uc003eia.3_Silent_p.S113S|ZNF148_uc003ehy.2_Intron	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	113					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						CCTGCTTTACGCTTATCTGTT	0.323000												
CHST13	166012	broad.mit.edu	37	3	126260936	126260936	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:126260936G>A	uc003eja.2	+	3	541	c.541G>A	c.(541-543)GCA>ACA	p.A181T		NM_152889	NP_690849	Q8NET6	CHSTD_HUMAN	carbohydrate sulfotransferase 13	181	PAPS (By similarity).|Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.151)		CGAGCGCCTGGCATCGGCTTA	0.632000												
CHCHD6	84303	broad.mit.edu	37	3	126676385	126676385	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:126676385C>T	uc003ejf.1	+	7	731	c.693C>T	c.(691-693)GCC>GCT	p.A231A	CHCHD6_uc010hsj.1_Silent_p.A232A	NM_032343	NP_115719	Q9BRQ6	CHCH6_HUMAN	coiled-coil-helix-coiled-coil-helix domain	231	CHCH.										0						GCGTGAGCGCCGCCCACAAGG	0.607000												
COPG	22820	broad.mit.edu	37	3	128984519	128984519	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:128984519T>C	uc003els.2	+	14	1452	c.1352T>C	c.(1351-1353)CTG>CCG	p.L451P	COPG_uc010htb.2_Missense_Mutation_p.L357P	NM_016128	NP_057212	Q9Y678	COPG_HUMAN	coatomer protein complex, subunit gamma 1	451					COPI coating of Golgi vesicle|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(3)|breast(1)	4						TTCACAGTGCTGGCCACCCGT	0.532000												
PLXND1	23129	broad.mit.edu	37	3	129324787	129324787	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:129324787G>A	uc003emx.2	-	1	796	c.696C>T	c.(694-696)TTC>TTT	p.F232F		NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	232	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						GCGTGTTCTCGAAGCGGTGGT	0.607000												
C3orf36	80111	broad.mit.edu	37	3	133647584	133647584	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:133647584G>T	uc003epz.1	-	1	1073	c.64C>A	c.(64-66)CTC>ATC	p.L22I		NM_025041	NP_079317	Q3SXR2	CC036_HUMAN	hypothetical protein LOC80111	22										ovary(1)	1						ACTAGGCTGAGCCCACTACTC	0.473000												
EPHB1	2047	broad.mit.edu	37	3	134670649	134670649	+	Missense_Mutation	SNP	T	T	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:134670649T>A	uc003eqt.2	+	3	780	c.560T>A	c.(559-561)CTT>CAT	p.L187H	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Intron	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	187	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						ATGTCTCTTCTTTCTGTCCGT	0.453000												
FOXL2	668	broad.mit.edu	37	3	138665453	138665453	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:138665453C>T	uc003esw.2	-	1	530	c.112G>A	c.(112-114)GGT>AGT	p.G38S	uc003esv.1_5'Flank|C3orf72_uc003esx.1_5'Flank|C3orf72_uc011bmr.1_5'Flank	NM_023067	NP_075555	P58012	FOXL2_HUMAN	forkhead box L2	38	Poly-Gly.				convergent extension|DNA fragmentation involved in apoptotic nuclear change|embryonic eye morphogenesis|extraocular skeletal muscle development|female somatic sex determination|induction of apoptosis|menstruation|negative regulation of transcription, DNA-dependent|ovarian follicle development|pattern specification process|positive regulation of caspase activity|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	caspase regulator activity|DNA bending activity|double-stranded DNA binding|estrogen receptor binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|ubiquitin conjugating enzyme binding			ovary(266)|large_intestine(1)|skin(1)	268						CCACCCCCACCGCCCTTGCCT	0.751000			Mis		granulosa-cell tumour of the ovary		Blepharophimosis|ptosis and epicanthus inversus Types I|II; Premature ovarian failure type III					
PRR23B	389151	broad.mit.edu	37	3	138739336	138739336	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:138739336C>T	uc003esy.1	-	1	433	c.168G>A	c.(166-168)GCG>GCA	p.A56A		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	56										breast(1)	1						TGGAGGTGAGCGCGTCCACGG	0.746000												
COPB2	9276	broad.mit.edu	37	3	139096964	139096964	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:139096964G>A	uc003etf.3	-	5	553	c.423C>T	c.(421-423)CAC>CAT	p.H141H	COPB2_uc011bmv.1_Silent_p.H112H|COPB2_uc010hui.2_Silent_p.H112H|COPB2_uc011bmw.1_Silent_p.H141H	NM_004766	NP_004757	P35606	COPB2_HUMAN	coatomer protein complex, subunit beta 2 (beta	141	WD 4.				COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(2)	2						CATAATGGGTGTGTCCTTCAA	0.413000												
GPR171	29909	broad.mit.edu	37	3	150916403	150916403	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:150916403G>A	uc003eyq.3	-	3	1011	c.771C>T	c.(769-771)TGC>TGT	p.C257C	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_013308	NP_037440	O14626	GP171_HUMAN	G protein-coupled receptor 171	257	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TCCTGGTTGAGCAATCAGTTA	0.458000												
TIPARP	25976	broad.mit.edu	37	3	156395504	156395504	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:156395504C>T	uc003fav.2	+	2	266	c.18C>T	c.(16-18)ACC>ACT	p.T6T	LOC100287227_uc011boq.1_5'Flank|TIPARP_uc003faw.2_Silent_p.T6T	NM_015508	NP_056323	Q7Z3E1	PARPT_HUMAN	TCDD-inducible poly(ADP-ribose) polymerase	6							NAD+ ADP-ribosyltransferase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|breast(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			TGGAAACCACCGAACCTGAGC	0.448000												
HTR3E	285242	broad.mit.edu	37	3	183824403	183824403	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:183824403G>T	uc010hxq.2	+	9	1759	c.1293G>T	c.(1291-1293)ATG>ATT	p.M431I	HTR3E_uc003fml.3_Missense_Mutation_p.M416I|HTR3E_uc003fmm.2_Missense_Mutation_p.M446I|HTR3E_uc010hxr.2_Missense_Mutation_p.M457I|HTR3E_uc003fmn.2_Missense_Mutation_p.M431I	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	431	Cytoplasmic (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			GCCACGCGATGGACGCCATGC	0.592000												
EHHADH	1962	broad.mit.edu	37	3	184953084	184953084	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:184953084G>A	uc003fpf.2	-	3	372	c.345C>T	c.(343-345)CAC>CAT	p.H115H	EHHADH_uc011brs.1_Silent_p.H19H	NM_001966	NP_001957	Q08426	ECHP_HUMAN	enoyl-Coenzyme A, hydratase/3-hydroxyacyl	115	Enoyl-CoA hydratase / isomerase.					peroxisome	3-hydroxyacyl-CoA dehydrogenase activity|coenzyme binding|dodecenoyl-CoA delta-isomerase activity|enoyl-CoA hydratase activity			ovary(3)	3	all_cancers(143;4.04e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.98e-32)|OV - Ovarian serous cystadenocarcinoma(80;5.55e-21)		NADH(DB00157)	TTACCTCTGCGTGGGCAATCC	0.488000												
JAKMIP1	152789	broad.mit.edu	37	4	6087300	6087300	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:6087300G>A	uc003giu.3	-	4	957	c.681C>T	c.(679-681)GGC>GGT	p.G227G	JAKMIP1_uc010idb.1_Silent_p.G227G|JAKMIP1_uc010idc.1_Silent_p.G62G|JAKMIP1_uc010idd.1_Silent_p.G227G|JAKMIP1_uc011bwc.1_Silent_p.G62G|JAKMIP1_uc003giv.3_Silent_p.G227G|JAKMIP1_uc010ide.2_Silent_p.G227G	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	227	Potential.|Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CAGCCTGCACGCCAAGTTCCT	0.537000												
JAKMIP1	152789	broad.mit.edu	37	4	6107371	6107371	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:6107371C>T	uc003giu.3	-	3	729	c.453G>A	c.(451-453)CTG>CTA	p.L151L	JAKMIP1_uc010idb.1_Silent_p.L151L|JAKMIP1_uc010idc.1_Intron|JAKMIP1_uc010idd.1_Silent_p.L151L|JAKMIP1_uc011bwc.1_Intron|JAKMIP1_uc003giv.3_Silent_p.L151L|JAKMIP1_uc010ide.2_Silent_p.L151L	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	151	Potential.|Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TCTCCTGCTGCAGCCGCAGGC	0.687000												
PSAPL1	768239	broad.mit.edu	37	4	7435572	7435572	+	Silent	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:7435572G>T	uc011bwj.1	-	1	1129	c.1035C>A	c.(1033-1035)CCC>CCA	p.P345P	SORCS2_uc003gkb.3_Intron|SORCS2_uc011bwi.1_Intron	NM_001085382	NP_001078851	Q6NUJ1	SAPL1_HUMAN	prosaposin-like protein 1	345	Saposin B-type 3.				sphingolipid metabolic process	extracellular region|lysosome					0						GCACCAAGGAGGGGCTGTAGG	0.592000												
LAP3	51056	broad.mit.edu	37	4	17579176	17579176	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:17579176G>A	uc003gph.1	+	1	250	c.88G>A	c.(88-90)GCA>ACA	p.A30T	LAP3_uc010ieg.2_Missense_Mutation_p.A30T	NM_015907	NP_056991	P28838	AMPL_HUMAN	leucine aminopeptidase 3	30					proteolysis	nucleus	aminopeptidase activity|magnesium ion binding|manganese ion binding|metalloexopeptidase activity|zinc ion binding				0						TCTCTCCACCGCAGACATGAC	0.692000												
APBB2	323	broad.mit.edu	37	4	40946923	40946923	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:40946923A>G	uc003gvl.2	-	7	1630	c.1000T>C	c.(1000-1002)TCA>CCA	p.S334P	APBB2_uc010ifu.2_5'UTR|APBB2_uc003gvm.2_Missense_Mutation_p.S334P|APBB2_uc003gvn.2_Missense_Mutation_p.S335P|APBB2_uc011byt.1_Missense_Mutation_p.S317P	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	334					cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						GAACTAAGTGACCCTTTCCTA	0.493000												
DCUN1D4	23142	broad.mit.edu	37	4	52765513	52765513	+	Missense_Mutation	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:52765513T>G	uc003gze.2	+	8	717	c.584T>G	c.(583-585)CTT>CGT	p.L195R	DCUN1D4_uc003gzf.2_Missense_Mutation_p.L195R|DCUN1D4_uc011bzn.1_Missense_Mutation_p.L135R|DCUN1D4_uc003gzg.2_RNA|DCUN1D4_uc003gzh.2_RNA|DCUN1D4_uc011bzo.1_Missense_Mutation_p.L239R	NM_001040402	NP_001035492	Q92564	DCNL4_HUMAN	DCN1, defective in cullin neddylation 1, domain	195	DCUN1.									ovary(2)	2			GBM - Glioblastoma multiforme(4;1.93e-11)|LUSC - Lung squamous cell carcinoma(32;0.00654)			AACTTTAAACTTATTTACAGA	0.353000												
CCDC158	339965	broad.mit.edu	37	4	77317535	77317535	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:77317535C>T	uc003hkb.3	-	3	328	c.175G>A	c.(175-177)GTG>ATG	p.V59M	CCDC158_uc003hkd.2_Missense_Mutation_p.V59M	NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	59										skin(3)|ovary(2)|pancreas(1)	6						TCAAGTTCCACTTCATATTTA	0.358000												
GSTCD	79807	broad.mit.edu	37	4	106640591	106640591	+	Silent	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:106640591C>A	uc003hxz.3	+	3	873	c.801C>A	c.(799-801)GCC>GCA	p.A267A	GSTCD_uc003hxx.2_Silent_p.A267A|GSTCD_uc003hxy.3_Silent_p.A180A|GSTCD_uc011cfb.1_Intron|GSTCD_uc010ils.1_Silent_p.A267A	NM_001031720	NP_001026890	Q8NEC7	GSTCD_HUMAN	glutathione S-transferase, C-terminal domain	267	GST C-terminal.					cytoplasm	rRNA methyltransferase activity			breast(1)|central_nervous_system(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.15e-07)|READ - Rectum adenocarcinoma(30;0.139)		AAGCAAAAGCCTCCGACCTTC	0.473000												
FAT4	79633	broad.mit.edu	37	4	126238850	126238850	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:126238850C>T	uc003ifj.3	+	1	1284	c.1284C>T	c.(1282-1284)CGC>CGT	p.R428R		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	428	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCTTGGACCGCGAGCGCATCC	0.607000											OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
FAT4	79633	broad.mit.edu	37	4	126241256	126241256	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:126241256A>C	uc003ifj.3	+	1	3690	c.3690A>C	c.(3688-3690)TTA>TTC	p.L1230F		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1230	Cadherin 12.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CACAAGTGTTAAGAGTATCTG	0.323000												
FAT4	79633	broad.mit.edu	37	4	126373025	126373025	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:126373025G>T	uc003ifj.3	+	9	10854	c.10854G>T	c.(10852-10854)GAG>GAT	p.E3618D	FAT4_uc011cgp.1_Missense_Mutation_p.E1916D|FAT4_uc003ifi.1_Missense_Mutation_p.E1096D	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3618	Cadherin 34.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GGACGGTGGAGATATTTGTTA	0.433000												
PCDH10	57575	broad.mit.edu	37	4	134072270	134072270	+	Silent	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:134072270A>G	uc003iha.2	+	1	1801	c.975A>G	c.(973-975)CAA>CAG	p.Q325Q	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Silent_p.Q325Q	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	325	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		CAGTGTACCAAGTGTACGTGC	0.607000												
DCHS2	54798	broad.mit.edu	37	4	155157276	155157276	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:155157276T>C	uc003inw.2	-	25	7163	c.7163A>G	c.(7162-7164)GAA>GGA	p.E2388G		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2388	Cadherin 21.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		ATTGCCATTTTCATAGTCAAG	0.418000												
DCHS2	54798	broad.mit.edu	37	4	155219587	155219587	+	Missense_Mutation	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:155219587T>G	uc003inw.2	-	18	4514	c.4514A>C	c.(4513-4515)AAG>ACG	p.K1505T		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1505	Cadherin 13.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GCCTTCATCCTTGTCCACAGC	0.458000												
ACCN5	51802	broad.mit.edu	37	4	156751149	156751149	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:156751149C>T	uc003ipe.1	-	10	1424	c.1377G>A	c.(1375-1377)ACG>ACA	p.T459T		NM_017419	NP_059115	Q9NY37	ACCN5_HUMAN	amiloride-sensitive cation channel 5,	459	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0464)|Kidney(143;0.058)|COAD - Colon adenocarcinoma(41;0.141)		TTTCTATGATCGTGATCAGAC	0.358000												
GLRA3	8001	broad.mit.edu	37	4	175649803	175649803	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:175649803C>T	uc003ity.1	-	4	817	c.314G>A	c.(313-315)CGC>CAC	p.R105H	GLRA3_uc003itz.1_Missense_Mutation_p.R105H	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	105	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	GTACGCGAGGCGGGGATCATT	0.383000												
WDR17	116966	broad.mit.edu	37	4	177046415	177046415	+	Silent	SNP	T	T	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:177046415T>A	uc003iuj.2	+	6	927	c.771T>A	c.(769-771)TCT>TCA	p.S257S	WDR17_uc003iuk.2_Silent_p.S233S|WDR17_uc003ium.3_Silent_p.S233S|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	257	WD 4.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		AATCACTTTCTTGCATAACAA	0.433000												
CDKN2AIP	55602	broad.mit.edu	37	4	184368545	184368545	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:184368545C>A	uc003ivp.1	+	3	1870	c.1708C>A	c.(1708-1710)CCT>ACT	p.P570T	CDKN2AIP_uc003ivq.1_Missense_Mutation_p.P315T	NM_017632	NP_060102	Q9NXV6	CARF_HUMAN	CDKN2A interacting protein	570					negative regulation of cell growth|positive regulation of signal transduction|regulation of protein stability	granular component|nucleoplasm	double-stranded RNA binding|p53 binding				0		all_lung(41;6.9e-12)|Lung NSC(41;1.28e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;1.15e-26)|Epithelial(43;2.98e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|GBM - Glioblastoma multiforme(59;4.22e-06)|Colorectal(24;5.87e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		TGTAAACTTACCTCCAGCACT	0.343000												
HELT	391723	broad.mit.edu	37	4	185940639	185940639	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:185940639G>A	uc011ckq.1	+	2	258	c.258G>A	c.(256-258)GCG>GCA	p.A86A	HELT_uc011cko.1_Silent_p.A42A|HELT_uc003ixa.3_Silent_p.A42A|HELT_uc011ckp.1_5'UTR	NM_001029887	NP_001025058	A6NFD8	HELT_HUMAN	HES/HEY-like transcription factor	86	Helix-loop-helix motif.						DNA binding				0		all_lung(41;9.65e-12)|Lung NSC(41;1.64e-11)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;8.92e-26)|Epithelial(43;3.02e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-11)|Colorectal(24;4.79e-05)|BRCA - Breast invasive adenocarcinoma(30;7.72e-05)|GBM - Glioblastoma multiforme(59;0.000274)|COAD - Colon adenocarcinoma(29;0.000362)|STAD - Stomach adenocarcinoma(60;0.000756)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		TGGCCTTGGCGAAGCAGGTAA	0.632000												
SORBS2	8470	broad.mit.edu	37	4	186583287	186583287	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:186583287C>T	uc003iyl.2	-	5	923	c.65G>A	c.(64-66)AGC>AAC	p.S22N	SORBS2_uc003iyh.2_Missense_Mutation_p.S201N|SORBS2_uc011ckw.1_Missense_Mutation_p.S91N|SORBS2_uc003iyi.2_Missense_Mutation_p.S108N|SORBS2_uc011ckx.1_Missense_Mutation_p.S68N|SORBS2_uc003iyk.2_Missense_Mutation_p.S108N|SORBS2_uc003iym.2_Missense_Mutation_p.S122N|SORBS2_uc003iyn.1_Missense_Mutation_p.S68N|SORBS2_uc011cky.1_Missense_Mutation_p.S85N|SORBS2_uc003iyp.2_Missense_Mutation_p.S122N|SORBS2_uc003iyd.2_Missense_Mutation_p.S201N|SORBS2_uc003iye.2_Missense_Mutation_p.S22N|SORBS2_uc003iya.2_Missense_Mutation_p.S22N|SORBS2_uc003iyb.2_Missense_Mutation_p.S22N|SORBS2_uc003iyc.2_Missense_Mutation_p.S22N|SORBS2_uc003iyg.2_Missense_Mutation_p.S108N|SORBS2_uc003iyf.2_Missense_Mutation_p.S85N	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	22						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		CATGACAATGCTGGAGTTGAG	0.502000												
DNAH5	1767	broad.mit.edu	37	5	13719115	13719115	+	Silent	SNP	C	C	T	rs140284455		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:13719115C>T	uc003jfd.2	-	72	12417	c.12375G>A	c.(12373-12375)GCG>GCA	p.A4125A	DNAH5_uc003jfc.2_Silent_p.A293A	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4125	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGAGGCGGAACGCATCATGTA	0.493000									Kartagener_syndrome			
CDH12	1010	broad.mit.edu	37	5	21760759	21760759	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:21760759T>C	uc010iuc.2	-	10	1999	c.1541A>G	c.(1540-1542)GAC>GGC	p.D514G	CDH12_uc011cno.1_Missense_Mutation_p.D474G|CDH12_uc003jgk.2_Missense_Mutation_p.D514G|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	514	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						AAGATCTCGGTCTGCAGCACT	0.403000										HNSCC(59;0.17)		
RXFP3	51289	broad.mit.edu	37	5	33937581	33937581	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:33937581C>A	uc003jic.1	+	1	1093	c.736C>A	c.(736-738)CTG>ATG	p.L246M		NM_016568	NP_057652	Q9NSD7	RL3R1_HUMAN	relaxin/insulin-like family peptide receptor 3	246	Extracellular (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1						GGGCGAGGAGCTGTGCCTGGT	0.652000												
BRIX1	55299	broad.mit.edu	37	5	34922810	34922810	+	Silent	SNP	C	C	T	rs143239489	byFrequency	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:34922810C>T	uc003jja.2	+	6	471	c.447C>T	c.(445-447)CTC>CTT	p.L149L	BRIX1_uc011col.1_Silent_p.L149L	NM_018321	NP_060791	Q8TDN6	BRX1_HUMAN	BRIX	149	Brix.				ribosome biogenesis|translation	nucleolus	aminoacyl-tRNA ligase activity|ATP binding|protein binding				0						TTCATACCCTCGCTGAACTGA	0.323000												
HTR1A	3350	broad.mit.edu	37	5	63256881	63256881	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:63256881C>T	uc011cqt.1	-	1	666	c.666G>A	c.(664-666)GCG>GCA	p.A222A		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	222	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	TGCGGAAGCGCGCAGCTCGGA	0.562000												
ACOT12	134526	broad.mit.edu	37	5	80689868	80689868	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:80689868C>T	uc003khl.3	-	1	121	c.66G>A	c.(64-66)GCG>GCA	p.A22A	RNU5E_uc011cto.1_Intron|ACOT12_uc003khm.2_Silent_p.A22A	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	22	Acyl coenzyme A hydrolase 1.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		GCTCGCCGCGCGCAGTGGCGT	0.582000												
GPR98	84059	broad.mit.edu	37	5	89948236	89948236	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:89948236C>T	uc003kju.2	+	19	3586	c.3490C>T	c.(3490-3492)CAG>TAG	p.Q1164*	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1164	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTCTGCTTTGCAGCCTGGGCA	0.378000												
GPR150	285601	broad.mit.edu	37	5	94956654	94956654	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:94956654G>A	uc003kle.1	+	1	675	c.675G>A	c.(673-675)CCG>CCA	p.P225P		NM_199243	NP_954713	Q8NGU9	GP150_HUMAN	G protein-coupled receptor 150	225	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(142;0.000462)|all_epithelial(76;2.44e-06)|all_lung(232;0.0318)|Lung NSC(167;0.041)|Ovarian(225;0.051)		all cancers(79;1.82e-16)		CGCCCCTGCCGCGCTGGCACC	0.517000												
FBN2	2201	broad.mit.edu	37	5	127681117	127681117	+	Missense_Mutation	SNP	G	G	A	rs150506063	byFrequency	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:127681117G>A	uc003kuu.2	-	24	3588	c.3149C>T	c.(3148-3150)ACG>ATG	p.T1050M	FBN2_uc003kuv.2_Missense_Mutation_p.T1017M	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1050	TB 5.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent	p.T1050M(1)		ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GGGGCACAGCGTCTCGTATTC	0.622000												
KIF3A	11127	broad.mit.edu	37	5	132070141	132070141	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:132070141G>A	uc003kxo.2	-	2	190	c.36C>T	c.(34-36)TGC>TGT	p.C12C	KIF3A_uc003kxn.2_5'UTR|KIF3A_uc011cxf.1_Silent_p.C12C|KIF3A_uc003kxp.2_Silent_p.C12C	NM_007054	NP_008985	Q9Y496	KIF3A_HUMAN	kinesin family member 3A	12	Kinesin-motor.				blood coagulation|organelle organization|plus-end-directed vesicle transport along microtubule	centrosome|cytosol|kinesin II complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|protein binding			pancreas(1)	1		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCACATTATCGCAGCTTTCTG	0.368000												
KDM3B	51780	broad.mit.edu	37	5	137727492	137727492	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:137727492G>A	uc003lcy.1	+	8	2371	c.2171G>A	c.(2170-2172)CGC>CAC	p.R724H	KDM3B_uc010jew.1_Missense_Mutation_p.R380H|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	724	Ser-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						GGGAATGGCCGCTCCAGCTCG	0.607000												
PCDHB3	56132	broad.mit.edu	37	5	140481106	140481106	+	Silent	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:140481106T>G	uc003lio.2	+	1	873	c.873T>G	c.(871-873)ACT>ACG	p.T291T	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	291	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCGCAAAACTTTTCAGCTAA	0.378000												
PCDHB4	56131	broad.mit.edu	37	5	140502924	140502924	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:140502924C>T	uc003lip.1	+	1	1344	c.1344C>T	c.(1342-1344)CCC>CCT	p.P448P		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	448	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAACGCCCCCGCCTTCACCC	0.597000												
PCDHB16	57717	broad.mit.edu	37	5	140563640	140563640	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:140563640C>T	uc003liv.2	+	1	2661	c.1506C>T	c.(1504-1506)TCC>TCT	p.S502S	PCDHB16_uc010jfw.1_Silent_p.S174S	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	502	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCTCGCCTCCCTGGTCTCCA	0.672000												
DIAPH1	1729	broad.mit.edu	37	5	140953602	140953602	+	Silent	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:140953602A>G	uc003llb.3	-	16	1956	c.1815T>C	c.(1813-1815)AGT>AGC	p.S605S	DIAPH1_uc003llc.3_Silent_p.S596S|DIAPH1_uc010jgc.1_Silent_p.S44S	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	605	FH1.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			gaggagTGGTACTATCCCCAG	0.438000												
POU4F3	5459	broad.mit.edu	37	5	145719806	145719806	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:145719806C>T	uc003loa.2	+	2	905	c.816C>T	c.(814-816)AGC>AGT	p.S272S		NM_002700	NP_002691	Q15319	PO4F3_HUMAN	POU class 4 homeobox 3	272					sensory perception of sound|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCAACGGCAGCGAACGGAAGC	0.607000												
DPYSL3	1809	broad.mit.edu	37	5	146777407	146777407	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:146777407G>A	uc003lon.1	-	12	1393	c.1283C>T	c.(1282-1284)GCG>GTG	p.A428V	DPYSL3_uc003loo.2_Missense_Mutation_p.A542V	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3	428					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTACTCTGCCGCCTAGAGGCA	0.537000												
RNF145	153830	broad.mit.edu	37	5	158601053	158601053	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:158601053G>A	uc003lxp.2	-	6	1048	c.735C>T	c.(733-735)TCC>TCT	p.S245S	RNF145_uc011ddy.1_Silent_p.S259S|RNF145_uc003lxo.1_Silent_p.S273S|RNF145_uc011ddz.1_Silent_p.S262S|RNF145_uc010jiq.1_Silent_p.S275S|RNF145_uc011dea.1_Silent_p.S261S	NM_144726	NP_653327	Q96MT1	RN145_HUMAN	ring finger protein 145	245	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TACTGAAATAGGAGTAAATCT	0.413000												
ODZ2	57451	broad.mit.edu	37	5	167617365	167617365	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:167617365C>A	uc010jjd.2	+	14	2566	c.2566C>A	c.(2566-2568)CCT>ACT	p.P856T	ODZ2_uc003lzr.3_Missense_Mutation_p.P633T|ODZ2_uc003lzt.3_Missense_Mutation_p.P229T|ODZ2_uc010jje.2_Missense_Mutation_p.P127T|uc003lzs.1_5'Flank	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TTGTTTGGACCCTGACTGCTG	0.577000												
DOCK2	1794	broad.mit.edu	37	5	169141082	169141082	+	Silent	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:169141082T>G	uc003maf.2	+	18	1790	c.1710T>G	c.(1708-1710)TCT>TCG	p.S570S	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.S62S|DOCK2_uc010jjl.1_Silent_p.S88S	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	570	DHR-1.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCCTTCCTTCTTATCGACACC	0.562000												
F12	2161	broad.mit.edu	37	5	176831539	176831539	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:176831539T>C	uc003mgo.3	-	8	810	c.761A>G	c.(760-762)CAA>CGA	p.Q254R	F12_uc011dfy.1_5'Flank|F12_uc003mgn.3_5'Flank|F12_uc010jkl.2_RNA	NM_000505	NP_000496	P00748	FA12_HUMAN	coagulation factor XII precursor	254	Kringle.				Factor XII activation|fibrinolysis|innate immune response|positive regulation of blood coagulation|positive regulation of fibrinolysis|positive regulation of plasminogen activation|protein autoprocessing|response to misfolded protein|zymogen activation	extracellular space|plasma membrane	serine-type endopeptidase activity				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GTTCCGCGCTTGCTCGGCAGT	0.751000									Hereditary_Angioedema		OREG0017088	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
ZNF454	285676	broad.mit.edu	37	5	178392714	178392714	+	Nonsense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:178392714G>T	uc003mjo.1	+	5	1580	c.1309G>T	c.(1309-1311)GAA>TAA	p.E437*	ZNF454_uc010jkz.1_Nonsense_Mutation_p.E437*	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	437					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		TCATACTGGGGAAAAACCTTA	0.408000												
ADAMTS2	9509	broad.mit.edu	37	5	178581083	178581083	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:178581083C>T	uc003mjw.2	-	8	1349	c.1349G>A	c.(1348-1350)CGC>CAC	p.R450H	ADAMTS2_uc011dgm.1_Missense_Mutation_p.R450H	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	450	Peptidase M12B.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CTGGCTGCAGCGGGACCAGTG	0.697000												
RANBP9	10048	broad.mit.edu	37	6	13622721	13622721	+	Missense_Mutation	SNP	G	G	A	rs112516735		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:13622721G>A	uc003nbb.2	-	14	2122	c.2063C>T	c.(2062-2064)ACC>ATC	p.T688I	RANBP9_uc003nba.2_Missense_Mutation_p.T347I	NM_005493	NP_005484	Q96S59	RANB9_HUMAN	RAN binding protein 9	688	Interaction with FMR1.				axon guidance|microtubule nucleation|protein complex assembly	cytosol|microtubule associated complex|nucleus	Ran GTPase binding			lung(1)|skin(1)	2	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.223)			CAGATTGTGGGTTTCTGAGGA	0.398000												
RANBP9	10048	broad.mit.edu	37	6	13644826	13644826	+	Missense_Mutation	SNP	G	G	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:13644826G>C	uc003nbb.2	-	6	1122	c.1063C>G	c.(1063-1065)CGA>GGA	p.R355G	RANBP9_uc003nba.2_Missense_Mutation_p.R14G	NM_005493	NP_005484	Q96S59	RANB9_HUMAN	RAN binding protein 9	355					axon guidance|microtubule nucleation|protein complex assembly	cytosol|microtubule associated complex|nucleus	Ran GTPase binding			lung(1)|skin(1)	2	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.223)			ATAGGAAATCGATCTATCTGT	0.393000												
NHLRC1	378884	broad.mit.edu	37	6	18122551	18122551	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:18122551G>A	uc003ncl.1	-	1	301	c.287C>T	c.(286-288)GCG>GTG	p.A96V		NM_198586	NP_940988	Q6VVB1	NHLC1_HUMAN	NHL repeat containing 1	96					proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	endoplasmic reticulum|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0	Ovarian(93;0.016)|Breast(50;0.0245)	all_hematologic(90;0.165)	all cancers(50;0.0451)|Epithelial(50;0.0493)			CTGGCGAAGCGCTGAGCCCAG	0.726000												
DCDC2	51473	broad.mit.edu	37	6	24178723	24178723	+	Missense_Mutation	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:24178723T>G	uc003ndx.2	-	9	1463	c.1161A>C	c.(1159-1161)CAA>CAC	p.Q387H	DCDC2_uc003ndy.2_Missense_Mutation_p.Q387H|DCDC2_uc003ndw.2_Missense_Mutation_p.Q138H	NM_016356	NP_057440	Q9UHG0	DCDC2_HUMAN	doublecortin domain containing 2	387					cellular defense response|intracellular signal transduction|neuron migration					ovary(1)	1		Ovarian(999;0.101)				TCTCCTCGACTTGCTCAGGGG	0.512000												
GPLD1	2822	broad.mit.edu	37	6	24436860	24436860	+	Missense_Mutation	SNP	G	G	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:24436860G>C	uc003ned.1	-	22	2413	c.2302C>G	c.(2302-2304)CTT>GTT	p.L768V		NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	768	FG-GAP 6.					extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						ATGTCACCAAGGGTGGTCTCT	0.438000												
BTN3A1	11119	broad.mit.edu	37	6	26409922	26409922	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:26409922A>C	uc003nhv.2	+	5	1245	c.877A>C	c.(877-879)ATG>CTG	p.M293L	BTN3A1_uc011dkj.1_Missense_Mutation_p.M293L|BTN3A1_uc011dkk.1_Missense_Mutation_p.M241L|BTN3A1_uc010jqj.2_Missense_Mutation_p.M293L	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	293	Cytoplasmic (Potential).				lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GTTGAGAGAAATGGCATGGAG	0.498000												
AGER	177	broad.mit.edu	37	6	32149201	32149201	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:32149201C>T	uc003oal.1	-	10	1069	c.1045G>A	c.(1045-1047)GGA>AGA	p.G349R	AGER_uc003oak.1_Missense_Mutation_p.G78R|AGER_uc003oar.2_Missense_Mutation_p.G248R|AGER_uc011dpm.1_Missense_Mutation_p.G239R|AGER_uc011dpn.1_Intron|AGER_uc010jtv.1_Intron|AGER_uc011dpo.1_Intron|AGER_uc003oam.1_RNA|AGER_uc003oan.1_Missense_Mutation_p.G297E|AGER_uc003oap.1_Missense_Mutation_p.G365R|AGER_uc003oat.1_Intron|AGER_uc003oao.1_RNA|AGER_uc003oaq.1_Missense_Mutation_p.G335R|AGER_uc010jtw.1_RNA|AGER_uc003oas.1_Intron|AGER_uc003oau.1_Intron	NM_001136	NP_001127	Q15109	RAGE_HUMAN	advanced glycosylation end product-specific	349	Helical; (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response|neuron projection development|positive regulation of NF-kappaB transcription factor activity	integral to plasma membrane	S100 alpha binding|transmembrane receptor activity			breast(1)	1						CCCAGGCCTCCCAGGATCCCC	0.627000												
ITPR3	3710	broad.mit.edu	37	6	33626517	33626517	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:33626517C>T	uc011drk.1	+	5	659	c.440C>T	c.(439-441)GCC>GTC	p.A147V		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	147	MIR 1.|Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						GAGAAGAACGCCATGCGGGTG	0.612000												
KCNK16	83795	broad.mit.edu	37	6	39282792	39282792	+	Nonsense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:39282792C>A	uc003ooq.2	-	6	930	c.916G>T	c.(916-918)GGA>TGA	p.G306*	KCNK17_uc003ooo.2_5'Flank|KCNK17_uc003oop.2_5'Flank|KCNK16_uc003oor.3_3'UTR|KCNK16_uc010jwy.2_Nonsense_Mutation_p.G259*	NM_032115	NP_115491	Q96T55	KCNKG_HUMAN	potassium channel, subfamily K, member 16	306	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(1)	3						CTTCCCAGTCCTTTCTTGGAT	0.592000												
USP49	25862	broad.mit.edu	37	6	41774065	41774065	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:41774065C>T	uc003ori.2	-	4	879	c.657G>A	c.(655-657)GCG>GCA	p.A219A		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49	219					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			cagccgggcccgcgtcgcggg	0.567000												
TRERF1	55809	broad.mit.edu	37	6	42204007	42204007	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:42204007G>A	uc003osd.2	-	16	3565	c.3002C>T	c.(3001-3003)CCG>CTG	p.P1001L	TRERF1_uc011duq.1_Missense_Mutation_p.P918L|TRERF1_uc003osb.2_Missense_Mutation_p.P757L|TRERF1_uc003osc.2_Missense_Mutation_p.P757L|TRERF1_uc003ose.2_Missense_Mutation_p.P1021L	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	1001	Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CTGCAGGGGCGGCCCCTCCGT	0.612000												
CUL9	23113	broad.mit.edu	37	6	43155045	43155045	+	Silent	SNP	C	C	T	rs61739541	byFrequency	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:43155045C>T	uc003ouk.2	+	6	1524	c.1449C>T	c.(1447-1449)CCC>CCT	p.P483P	CUL9_uc003ouj.1_Intron|CUL9_uc003oul.2_Silent_p.P483P|CUL9_uc010jyk.2_5'UTR|CUL9_uc003oum.1_Intron	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	483					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						ACCTCCAGCCCGAACCTCAGA	0.542000												
PKHD1	5314	broad.mit.edu	37	6	51637556	51637556	+	Silent	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:51637556A>C	uc003pah.1	-	55	8862	c.8586T>G	c.(8584-8586)GCT>GCG	p.A2862A	PKHD1_uc010jzn.1_Silent_p.A845A|PKHD1_uc003pai.2_Silent_p.A2862A	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	2862	G8 2.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TCTTAGGATAAGCACTGTAAA	0.388000												
MCM3	4172	broad.mit.edu	37	6	52147569	52147569	+	Missense_Mutation	SNP	C	C	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:52147569C>G	uc003pan.1	-	3	392	c.282G>C	c.(280-282)CAG>CAC	p.Q94H	MCM3_uc011dwu.1_Missense_Mutation_p.Q48H	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	94					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					ACTCCTCATACTGCTTGGCAT	0.532000												
GCM1	8521	broad.mit.edu	37	6	52998929	52998929	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:52998929T>C	uc003pbp.2	-	3	478	c.269A>G	c.(268-270)GAG>GGG	p.E90G	GCM1_uc010jzr.2_Missense_Mutation_p.E90G	NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	90	GCM.					transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					CTTGCGCCCCTCCTCTGCGAG	0.597000												
KCNQ5	56479	broad.mit.edu	37	6	73904777	73904777	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:73904777A>C	uc003pgk.2	+	14	2786	c.2439A>C	c.(2437-2439)GAA>GAC	p.E813D	KCNQ5_uc011dyh.1_Missense_Mutation_p.E832D|KCNQ5_uc011dyi.1_Missense_Mutation_p.E823D|KCNQ5_uc010kat.2_Missense_Mutation_p.E804D|KCNQ5_uc011dyj.1_Missense_Mutation_p.E703D|KCNQ5_uc011dyk.1_Missense_Mutation_p.E563D	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	813					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TGGGAGGAGAAACTCTGTTGT	0.473000												
RPF2	84154	broad.mit.edu	37	6	111336988	111336988	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:111336988C>T	uc003pun.2	+	8	544	c.525C>T	c.(523-525)ATC>ATT	p.I175I	RPF2_uc003puo.2_Silent_p.I112I	NM_032194	NP_115570	Q9H7B2	RPF2_HUMAN	brix domain containing 1	175	Brix.					nucleolus	protein binding			ovary(2)	2						TATCAAATATCCGCCTGGCTG	0.343000												
FYN	2534	broad.mit.edu	37	6	112024169	112024169	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:112024169G>A	uc003pvj.2	-	7	956	c.616C>T	c.(616-618)CGC>TGC	p.R206C	FYN_uc003pvi.2_Missense_Mutation_p.R206C|FYN_uc003pvk.2_Missense_Mutation_p.R206C|FYN_uc003pvh.2_Missense_Mutation_p.R206C|FYN_uc010kdy.1_Missense_Mutation_p.R12C	NM_002037	NP_002028	P06241	FYN_HUMAN	protein-tyrosine kinase fyn isoform a	206	SH2.				axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|central_nervous_system(1)|skin(1)	7		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	TCAAGTTTGCGAATTTTATAA	0.408000												
C6orf174	387104	broad.mit.edu	37	6	127797312	127797312	+	Missense_Mutation	SNP	T	T	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:127797312T>A	uc003qbd.2	-	6	2724	c.1859A>T	c.(1858-1860)GAC>GTC	p.D620V	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	620	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		CCTAAGGTCGTCCAGTTCCGC	0.602000												
HBS1L	10767	broad.mit.edu	37	6	135318688	135318688	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:135318688C>A	uc003qez.2	-	6	853	c.646G>T	c.(646-648)GCT>TCT	p.A216S	HBS1L_uc003qey.2_Missense_Mutation_p.A52S|HBS1L_uc011ecy.1_Intron|HBS1L_uc011ecz.1_Missense_Mutation_p.A52S|HBS1L_uc011eda.1_Missense_Mutation_p.A174S	NM_006620	NP_006611	Q9Y450	HBS1L_HUMAN	Hsp70 subfamily B suppressor 1-like protein	216					signal transduction		GTP binding|GTPase activity|translation elongation factor activity			skin(2)	2	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0046)|GBM - Glioblastoma multiforme(68;0.00702)		GGTGGATTAGCAGATTTAGAA	0.468000												
STX11	8676	broad.mit.edu	37	6	144507972	144507972	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:144507972G>A	uc003qks.3	+	2	400	c.208G>A	c.(208-210)GCC>ACC	p.A70T		NM_003764	NP_003755	O75558	STX11_HUMAN	syntaxin 11	70	Potential.				cellular membrane fusion|intracellular protein transport|vesicle-mediated transport	Golgi apparatus|membrane	SNAP receptor activity			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(155;2.17e-06)|GBM - Glioblastoma multiforme(68;0.0492)		AAAGCAGAACGCCCGCTTCCT	0.622000									Familial_Hemophagocytic_Lymphohistiocytosis			
SYNE1	23345	broad.mit.edu	37	6	152679642	152679642	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:152679642G>A	uc010kiw.2	-	66	11076	c.10474C>T	c.(10474-10476)CGC>TGC	p.R3492C	SYNE1_uc003qot.3_Missense_Mutation_p.R3499C|SYNE1_uc003qou.3_Missense_Mutation_p.R3492C|SYNE1_uc010kja.1_Missense_Mutation_p.R197C	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	3492	Spectrin 8.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGGTGCAGGCGGACAAGTTTT	0.393000										HNSCC(10;0.0054)		
LPA	4018	broad.mit.edu	37	6	161071490	161071490	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:161071490T>C	uc003qtl.2	-	3	209	c.89A>G	c.(88-90)CAT>CGT	p.H30R		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	2538	Kringle 23.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TCCATCACCATGGTAGCAATC	0.438000												
THBS2	7058	broad.mit.edu	37	6	169639759	169639759	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:169639759C>T	uc003qwt.2	-	8	1312	c.1064G>A	c.(1063-1065)TGC>TAC	p.C355Y		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	355	VWFC.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		TGCAGGCGGGCAGGTGATTTG	0.527000												
C7orf50	84310	broad.mit.edu	37	7	1049623	1049623	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:1049623G>A	uc003sju.2	-	3	356	c.286C>T	c.(286-288)CGC>TGC	p.R96C	C7orf50_uc003sjs.2_RNA|C7orf50_uc011jvt.1_Missense_Mutation_p.R96C|C7orf50_uc011jvu.1_Missense_Mutation_p.R96C	NM_032350	NP_115726	Q9BRJ6	CG050_HUMAN	hypothetical protein LOC84310	96							protein binding				0		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0216)|OV - Ovarian serous cystadenocarcinoma(56;1.3e-15)		GCCCCCGAGCGCCTGGCAGGC	0.677000												
TNRC18	84629	broad.mit.edu	37	7	5427549	5427549	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:5427549G>A	uc003soi.3	-	5	2255	c.1906C>T	c.(1906-1908)CGT>TGT	p.R636C	TNRC18_uc010ksx.1_Missense_Mutation_p.R562C	NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	636							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		TGTGGGAGACGGGCCTGGGCT	0.721000												
COL28A1	340267	broad.mit.edu	37	7	7530221	7530221	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:7530221C>T	uc003src.1	-	12	1200	c.1083G>A	c.(1081-1083)CAG>CAA	p.Q361Q	COL28A1_uc011jxe.1_Missense_Mutation_p.S47N|COL28A1_uc003srd.2_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	361					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TAATACCTTGCTGTCCAATTC	0.463000												
DNAH11	8701	broad.mit.edu	37	7	21920488	21920488	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:21920488A>G	uc003svc.2	+	76	12416	c.12385A>G	c.(12385-12387)AAC>GAC	p.N4129D		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	4129	AAA 6 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TGTCCTCTACAACTACTTAGA	0.483000									Kartagener_syndrome			
C7orf46	340277	broad.mit.edu	37	7	23728932	23728932	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:23728932G>T	uc003swo.3	+	3	373	c.284G>T	c.(283-285)TGC>TTC	p.C95F	C7orf46_uc003swq.3_Missense_Mutation_p.C95F|C7orf46_uc003swr.3_Missense_Mutation_p.C37F|C7orf46_uc003swp.3_RNA|C7orf46_uc010kup.2_RNA	NM_199136	NP_954587	A4D161	CG046_HUMAN	hypothetical protein LOC340277 isoform 1	95											0						CCTCAGCAGTGCCCCATTGAT	0.443000												
FKBP9	11328	broad.mit.edu	37	7	33014948	33014948	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:33014948C>T	uc003tdh.2	+	3	703	c.522C>T	c.(520-522)AAC>AAT	p.N174N	AVL9_uc011kai.1_Intron|FKBP9_uc011kak.1_RNA|FKBP9_uc011kal.1_Silent_p.N227N|FKBP9_uc003tdg.2_Silent_p.N174N|FKBP9_uc010kwm.2_Silent_p.N81N	NM_007270	NP_009201	O95302	FKBP9_HUMAN	FK506 binding protein 9 precursor	174	PPIase FKBP-type 2.				protein folding	endoplasmic reticulum|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			central_nervous_system(13)|ovary(1)	14			GBM - Glioblastoma multiforme(11;0.0156)			ACCACTACAACGGGACGTTCC	0.478000												
WBSCR17	64409	broad.mit.edu	37	7	71130460	71130460	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:71130460A>C	uc003tvy.2	+	7	1145	c.1145A>C	c.(1144-1146)AAG>ACG	p.K382T	WBSCR17_uc003tvz.2_Missense_Mutation_p.K81T	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	382	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				ATTGAGCGGAAGAAGAAGCCA	0.488000												
HIP1	3092	broad.mit.edu	37	7	75191425	75191425	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:75191425C>T	uc003uds.1	-	12	1111	c.1070G>A	c.(1069-1071)AGT>AAT	p.S357N	HIP1_uc011kfz.1_Missense_Mutation_p.S234N	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	357					activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						GAAGGGATCACTGCTGAATGA	0.413000			T	PDGFRB	CMML							
PTPN12	5782	broad.mit.edu	37	7	77200395	77200395	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:77200395C>T	uc003ugh.2	+	2	191	c.100C>T	c.(100-102)CGG>TGG	p.R34W	PTPN12_uc011kgp.1_5'UTR|PTPN12_uc011kgq.1_5'UTR|PTPN12_uc010ldq.1_RNA|PTPN12_uc010ldr.1_RNA	NM_002835	NP_002826	Q05209	PTN12_HUMAN	protein tyrosine phosphatase, non-receptor type	34	Tyrosine-protein phosphatase.					soluble fraction	non-membrane spanning protein tyrosine phosphatase activity|SH3 domain binding			ovary(1)|breast(1)|pancreas(1)	3						GTATTTTAAGCGGTTAAGAAG	0.303000												
ABCB4	5244	broad.mit.edu	37	7	87104745	87104745	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:87104745G>A	uc003uiv.1	-	2	113	c.37C>T	c.(37-39)CGC>TGC	p.R13C	ABCB4_uc003uiw.1_Missense_Mutation_p.R13C|ABCB4_uc003uix.1_Missense_Mutation_p.R13C|ABCB4_uc003uiy.2_Missense_Mutation_p.R13C	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	13	Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CTCGTGGGGCGCCAGGCTGTT	0.607000												
TRRAP	8295	broad.mit.edu	37	7	98609737	98609737	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:98609737C>T	uc003upp.2	+	72	11548	c.11339C>T	c.(11338-11340)GCT>GTT	p.A3780V	TRRAP_uc011kis.1_Missense_Mutation_p.A3751V|TRRAP_uc003upr.2_Missense_Mutation_p.A3486V|TRRAP_uc003ups.2_5'Flank	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3780	PI3K/PI4K.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GAGATCATTGCTTGGCACAAA	0.552000												
SMURF1	57154	broad.mit.edu	37	7	98638150	98638150	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:98638150C>T	uc003upu.1	-	14	1799	c.1479G>A	c.(1477-1479)GGG>GGA	p.G493G	SMURF1_uc003upv.1_Silent_p.G467G|SMURF1_uc003upt.2_Silent_p.G467G	NM_020429	NP_065162	Q9HCE7	SMUF1_HUMAN	Smad ubiquitination regulatory factor 1 isoform	493	HECT.				BMP signaling pathway|cell differentiation|ectoderm development|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process|protein export from nucleus|protein localization at cell surface|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|plasma membrane	activin binding|I-SMAD binding|R-SMAD binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|lung(1)	4	all_cancers(62;1.05e-08)|all_epithelial(64;4.34e-09)|Lung NSC(181;0.00902)|all_lung(186;0.0145)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)|Lung(104;0.224)			CCATGATCCGCCCCACAAAGT	0.567000											OREG0018189	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
TAF6	6878	broad.mit.edu	37	7	99711374	99711374	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:99711374C>T	uc003uti.2	-	4	343	c.262G>A	c.(262-264)GCC>ACC	p.A88T	TAF6_uc003utg.2_Missense_Mutation_p.A29T|TAF6_uc003uth.2_Missense_Mutation_p.A145T|TAF6_uc003utk.2_Missense_Mutation_p.A88T|TAF6_uc011kji.1_Missense_Mutation_p.A125T|TAF6_uc003utj.2_Missense_Mutation_p.A78T|TAF6_uc003utl.2_Missense_Mutation_p.A88T|TAF6_uc003utm.2_Missense_Mutation_p.A88T|TAF6_uc003utn.1_RNA	NM_139315	NP_647476	P49848	TAF6_HUMAN	TBP-associated factor 6 isoform alpha	88					negative regulation of cell cycle|negative regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AACTCCTGGGCGTGGAAGCCA	0.607000												
GIGYF1	64599	broad.mit.edu	37	7	100283658	100283658	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:100283658G>A	uc003uwg.1	-	9	2002	c.993C>T	c.(991-993)TTC>TTT	p.F331F		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	331										large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CCAACCCTTGGAAGTCCAGCT	0.687000												
EMID2	136227	broad.mit.edu	37	7	101183279	101183279	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:101183279A>G	uc010lhy.1	+	5	739	c.547A>G	c.(547-549)ATC>GTC	p.I183V	EMID2_uc003uyo.1_Missense_Mutation_p.I185V	NM_133457	NP_597714	Q96A83	EMID2_HUMAN	EMI domain containing 2	185						collagen				ovary(1)	1	Lung NSC(181;0.215)					CCCCGACGCCATCCCTCTTGC	0.672000												
PPP1R3A	5506	broad.mit.edu	37	7	113519924	113519924	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:113519924G>A	uc010ljy.1	-	4	1254	c.1223C>T	c.(1222-1224)ACT>ATT	p.T408I		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	408					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						ATTTGAAGTAGTTTCCTCTGA	0.393000												
C7orf58	79974	broad.mit.edu	37	7	120740134	120740134	+	Missense_Mutation	SNP	C	C	T	rs145131821		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:120740134C>T	uc003vjq.3	+	7	1351	c.904C>T	c.(904-906)CGC>TGC	p.R302C	C7orf58_uc003vjr.1_Missense_Mutation_p.R302C|C7orf58_uc003vjs.3_Missense_Mutation_p.R302C|C7orf58_uc003vjt.3_Missense_Mutation_p.R82C|C7orf58_uc010lkk.1_Missense_Mutation_p.R82C	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	302						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					AAAGAAAAAACGCTTCACTGT	0.428000												
PTPRZ1	5803	broad.mit.edu	37	7	121652741	121652741	+	Missense_Mutation	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:121652741T>G	uc003vjy.2	+	12	4036	c.3641T>G	c.(3640-3642)GTT>GGT	p.V1214G	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1214	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						ACCCCCAAAGTTGATAAAATT	0.398000												
RNF133	168433	broad.mit.edu	37	7	122338523	122338523	+	Silent	SNP	G	G	A	rs151248984		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:122338523G>A	uc003vkj.1	-	1	686	c.450C>T	c.(448-450)GTC>GTT	p.V150V	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron	NM_139175	NP_631914	Q8WVZ7	RN133_HUMAN	ring finger protein 133	150	PA.					endoplasmic reticulum membrane|integral to membrane	ligase activity|zinc ion binding			skin(1)	1						TAACCACAACGACATCTTCAA	0.448000												
CCDC136	64753	broad.mit.edu	37	7	128447448	128447448	+	Missense_Mutation	SNP	A	A	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:128447448A>T	uc003vnv.1	+	10	1821	c.1454A>T	c.(1453-1455)AAG>ATG	p.K485M	CCDC136_uc003vnu.1_Intron|CCDC136_uc003vnw.1_Missense_Mutation_p.K432M|CCDC136_uc003vnx.1_Missense_Mutation_p.K301M|CCDC136_uc010llq.1_Translation_Start_Site|CCDC136_uc003vny.1_Missense_Mutation_p.K95M	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	485						integral to membrane	protein binding			ovary(2)	2						CAGGAGATGAAGCAGCTGTAC	0.622000												
PLXNA4	91584	broad.mit.edu	37	7	131912276	131912276	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:131912276C>T	uc003vra.3	-	7	2045	c.1816G>A	c.(1816-1818)GTG>ATG	p.V606M		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	606	Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TGATTGCCCACGACCAGCCCA	0.587000												
ATP6V0A4	50617	broad.mit.edu	37	7	138417723	138417723	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:138417723C>T	uc003vuf.2	-	16	2045	c.1807G>A	c.(1807-1809)GTC>ATC	p.V603I	ATP6V0A4_uc003vug.2_Missense_Mutation_p.V603I|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.V603I	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	603	Helical; (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						GATACATGGACGTCAAAGCAG	0.423000												
MLL3	58508	broad.mit.edu	37	7	151884817	151884817	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:151884817G>A	uc003wla.2	-	32	4995	c.4776C>T	c.(4774-4776)TCC>TCT	p.S1592S	MLL3_uc003wkz.2_Silent_p.S653S	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1592					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CAGGATAAGAGGATTGTGCAA	0.388000			N		medulloblastoma							
HTR5A	3361	broad.mit.edu	37	7	154863077	154863077	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:154863077C>T	uc003wlu.1	+	1	532	c.468C>T	c.(466-468)TGC>TGT	p.C156C	uc011kvt.1_5'UTR|uc003wlt.2_5'UTR	NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	156	Cytoplasmic (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		CCCGCAAGTGCGTCTCCAACG	0.622000												
ZNF596	169270	broad.mit.edu	37	8	195481	195481	+	Nonsense_Mutation	SNP	C	C	T	rs145428583		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:195481C>T	uc003wot.2	+	6	922	c.634C>T	c.(634-636)CGA>TGA	p.R212*	ZNF596_uc003wou.2_Nonsense_Mutation_p.R111*|ZNF596_uc003wov.2_Nonsense_Mutation_p.R212*|ZNF596_uc003wow.2_Nonsense_Mutation_p.R212*	NM_173539	NP_775810	Q8TC21	ZN596_HUMAN	zinc finger protein 596	212	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(2;4.81e-29)|all_epithelial(2;5.03e-19)|Lung NSC(2;8.68e-08)|all_lung(2;1.52e-07)|Ovarian(12;0.00965)|Colorectal(14;0.0367)|all_neural(12;0.0837)|Myeloproliferative disorder(644;0.116)|all_hematologic(2;0.138)|Acute lymphoblastic leukemia(644;0.242)		Epithelial(5;3.77e-18)|all cancers(2;5.2e-17)|OV - Ovarian serous cystadenocarcinoma(5;5.37e-09)|BRCA - Breast invasive adenocarcinoma(11;1.7e-06)|Colorectal(2;6.51e-05)|READ - Rectum adenocarcinoma(2;0.0276)|COAD - Colon adenocarcinoma(149;0.0702)		TAATCTTAGGCGACATGAGAT	0.423000												
MSR1	4481	broad.mit.edu	37	8	16007762	16007762	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:16007762G>A	uc003wwz.2	-	7	1155	c.957C>T	c.(955-957)CTC>CTT	p.L319L	MSR1_uc010lsu.2_Silent_p.L337L|MSR1_uc003wxa.2_Silent_p.L319L|MSR1_uc003wxb.2_Silent_p.L319L|MSR1_uc011kxz.1_Silent_p.L93L	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	319	Collagen-like.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		CATATCCTGGGAGTCCTCGAC	0.343000												
PIWIL2	55124	broad.mit.edu	37	8	22173817	22173817	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:22173817C>T	uc003xbn.2	+	19	2416	c.2268C>T	c.(2266-2268)TCC>TCT	p.S756S	PIWIL2_uc011kzf.1_Silent_p.S756S|PIWIL2_uc010ltv.2_Silent_p.S756S	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	756	Piwi.				DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		GCATGCGCTCCGTGGTTGGCT	0.418000												
SLC25A37	51312	broad.mit.edu	37	8	23425872	23425872	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:23425872G>A	uc003xdo.2	+	3	630	c.477G>A	c.(475-477)GCG>GCA	p.A159A	SLC25A37_uc003xdp.2_RNA|SLC25A37_uc010ltz.2_Intron|SLC25A37_uc003xdq.2_RNA|SLC25A37_uc003xdr.1_5'Flank	NM_016612	NP_057696	Q9NYZ2	MFRN1_HUMAN	solute carrier family 25, member 37	159	Solcar 2.|Helical; Name=3; (Potential).				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Prostate(55;0.114)		Colorectal(74;0.0198)|COAD - Colon adenocarcinoma(73;0.0751)		TCCACGATGCGGTAATGAATC	0.522000												
ZNF395	55893	broad.mit.edu	37	8	28210871	28210871	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:28210871C>T	uc003xgq.2	-	5	726	c.638G>A	c.(637-639)GGC>GAC	p.G213D	ZNF395_uc003xgt.2_Missense_Mutation_p.G213D|ZNF395_uc003xgr.2_Missense_Mutation_p.G213D|ZNF395_uc003xgs.2_Missense_Mutation_p.G213D	NM_018660	NP_061130	Q9H8N7	ZN395_HUMAN	zinc finger protein 395	213					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.102)|Kidney(114;0.123)|Colorectal(74;0.142)		AGTGCTGCTGCCGCTGTCCGA	0.637000												
FUT10	84750	broad.mit.edu	37	8	33247216	33247216	+	Silent	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:33247216A>G	uc003xje.2	-	4	833	c.477T>C	c.(475-477)TTT>TTC	p.F159F	FUT10_uc003xjc.2_Silent_p.F166F|FUT10_uc003xjd.2_Silent_p.F131F|FUT10_uc011lbi.1_Silent_p.F209F|FUT10_uc003xjf.2_Silent_p.F97F|FUT10_uc003xjg.2_Silent_p.F131F|FUT10_uc003xjh.2_Silent_p.F159F	NM_032664	NP_116053	Q6P4F1	FUT10_HUMAN	fucosyltransferase 10	159	Lumenal (Potential).				embryo development|fertilization|hemopoiesis|L-fucose catabolic process|nervous system development|protein folding|protein glycosylation|protein targeting|wound healing	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			ovary(1)|pancreas(1)	2				KIRC - Kidney renal clear cell carcinoma(67;0.129)|Kidney(114;0.154)		CTGGTTTATGAAAGAGCTTAT	0.443000												
ANK1	286	broad.mit.edu	37	8	41753957	41753957	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:41753957G>A	uc003xom.2	-	1	324	c.42C>T	c.(40-42)ATC>ATT	p.I14I		NM_001142446	NP_001135918	P16157	ANK1_HUMAN	ankyrin 1 isoform 9	Error:Variant_position_missing_in_P16157_after_alignment					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CCTGCGCCTCGATGTCTTTGA	0.632000												
MYST3	7994	broad.mit.edu	37	8	41834610	41834610	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:41834610G>A	uc010lxb.2	-	8	1823	c.1279C>T	c.(1279-1281)CGG>TGG	p.R427W	MYST3_uc010lxc.2_Missense_Mutation_p.R427W|MYST3_uc003xon.3_Missense_Mutation_p.R427W|MYST3_uc010lxd.2_Missense_Mutation_p.R427W	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	427	Interaction with RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			ACTTCCCCCCGAGCTTTCCGC	0.468000												
ZFHX4	79776	broad.mit.edu	37	8	77617679	77617679	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:77617679C>A	uc003yav.2	+	2	1743	c.1356C>A	c.(1354-1356)AAC>AAA	p.N452K	ZFHX4_uc003yat.1_Missense_Mutation_p.N452K|ZFHX4_uc003yau.1_Missense_Mutation_p.N452K|ZFHX4_uc003yaw.1_Missense_Mutation_p.N452K	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	452						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AAGAAAGCAACGTTTTACACC	0.483000										HNSCC(33;0.089)		
ZFHX4	79776	broad.mit.edu	37	8	77775430	77775430	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:77775430G>T	uc003yav.2	+	11	9732	c.9345G>T	c.(9343-9345)CAG>CAT	p.Q3115H		NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3111	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTTTGCTGCAGActccaccac	0.398000										HNSCC(33;0.089)		
ADCY8	114	broad.mit.edu	37	8	131916177	131916177	+	Silent	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:131916177A>G	uc003ytd.3	-	7	2008	c.1752T>C	c.(1750-1752)ACT>ACC	p.T584T	ADCY8_uc010mds.2_Silent_p.T584T	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	584	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TAATTAAGTAAGTTTCGATAT	0.483000										HNSCC(32;0.087)		
COL22A1	169044	broad.mit.edu	37	8	139618653	139618653	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:139618653G>T	uc003yvd.2	-	58	4522	c.4075C>A	c.(4075-4077)CCT>ACT	p.P1359T	COL22A1_uc011ljo.1_Missense_Mutation_p.P639T	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1359	Pro-rich.|Gly-rich.|Collagen-like 13.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			AGGAAGCCAGGAAGTCCTGGG	0.537000										HNSCC(7;0.00092)		
KCNK9	51305	broad.mit.edu	37	8	140715004	140715004	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:140715004A>G	uc003yvf.1	-	1	296	c.232T>C	c.(232-234)TGG>CGG	p.W78R	KCNK9_uc003yvg.1_Missense_Mutation_p.W78R	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	78	Extracellular (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			GCGAATTTCCACTGGACGCCG	0.652000												
GPR20	2843	broad.mit.edu	37	8	142367316	142367316	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:142367316G>A	uc003ywf.2	-	2	797	c.708C>T	c.(706-708)CGC>CGT	p.R236R		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	236	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			TGGCCCGCACGCGGCGCTGGC	0.667000												
BAI1	575	broad.mit.edu	37	8	143558811	143558811	+	Missense_Mutation	SNP	C	C	T	rs76763828		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:143558811C>T	uc003ywm.2	+	5	1471	c.1288C>T	c.(1288-1290)CGG>TGG	p.R430W		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	430	Extracellular (Potential).|TSP type-1 3.				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CCGTGGCTTTCGGGATCGCAC	0.657000												
FAM83H	286077	broad.mit.edu	37	8	144810229	144810229	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:144810229G>A	uc003yzk.2	-	5	1471	c.1402C>T	c.(1402-1404)CGC>TGC	p.R468C	FAM83H_uc010mfk.1_RNA	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	468					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CCTTGCGGGCGCGCCGGCGTG	0.711000												
SCRIB	23513	broad.mit.edu	37	8	144885864	144885864	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:144885864C>T	uc003yzp.1	-	23	3374	c.3367G>A	c.(3367-3369)GCT>ACT	p.A1123T	SCRIB_uc003yzn.1_5'UTR|SCRIB_uc003yzo.1_Missense_Mutation_p.A1123T	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	1123	PDZ 4.|Interaction with ARHGEF7.				activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			GGGTTGCCAGCGTGGCCCCTG	0.721000												
PLEC	5339	broad.mit.edu	37	8	145001034	145001034	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:145001034G>A	uc003zaf.1	-	30	4543	c.4373C>T	c.(4372-4374)ACG>ATG	p.T1458M	PLEC_uc003zab.1_Missense_Mutation_p.T1321M|PLEC_uc003zac.1_Missense_Mutation_p.T1325M|PLEC_uc003zad.2_Missense_Mutation_p.T1321M|PLEC_uc003zae.1_Missense_Mutation_p.T1289M|PLEC_uc003zag.1_Missense_Mutation_p.T1299M|PLEC_uc003zah.2_Missense_Mutation_p.T1307M|PLEC_uc003zaj.2_Missense_Mutation_p.T1348M	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	1458	Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCTGTAGTGCGTACGCAGGTC	0.627000												
SPATC1	375686	broad.mit.edu	37	8	145101823	145101823	+	Missense_Mutation	SNP	C	C	G	rs137945127		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:145101823C>G	uc011lkw.1	+	5	1844	c.1742C>G	c.(1741-1743)GCG>GGG	p.A581G	SPATC1_uc011lkx.1_3'UTR	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	581										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AGCCAGCTGGCGCACGATGAC	0.662000												
PPP1R16A	84988	broad.mit.edu	37	8	145722779	145722779	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:145722779C>A	uc003zdd.2	+	2	1115	c.202C>A	c.(202-204)CTC>ATC	p.L68I	uc003zde.1_Missense_Mutation_p.R112M|PPP1R16A_uc003zdf.2_Missense_Mutation_p.L68I	NM_032902	NP_116291	Q96I34	PP16A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	68				Missing (in Ref. 1; BAC03452).		plasma membrane	protein binding				0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			GAAGCAGGTCCTCTTCCCTCC	0.647000												
SMARCA2	6595	broad.mit.edu	37	9	2039502	2039502	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:2039502C>A	uc003zhc.2	+	4	491	c.392C>A	c.(391-393)CCA>CAA	p.P131Q	SMARCA2_uc003zhd.2_Missense_Mutation_p.P131Q|SMARCA2_uc010mha.2_Missense_Mutation_p.P122Q	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	131					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		TTAGGAGCCCCAGAGCACGTC	0.552000												
DENND4C	55667	broad.mit.edu	37	9	19334985	19334985	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:19334985G>A	uc003znq.2	+	14	1796	c.1763G>A	c.(1762-1764)CGA>CAA	p.R588Q	DENND4C_uc011lnc.1_5'UTR|DENND4C_uc011lnd.1_5'Flank	NM_017925	NP_060395	Q5VZ89	DEN4C_HUMAN	DENN/MADD domain containing 4C	588	PPR.					integral to membrane				ovary(1)|skin(1)	2						GTGTGCTATCGAGTAGTGATG	0.338000												
KIAA1797	54914	broad.mit.edu	37	9	20881873	20881873	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:20881873T>C	uc003zog.1	+	22	2684	c.2321T>C	c.(2320-2322)TTG>TCG	p.L774S	KIAA1797_uc003zoh.1_Missense_Mutation_p.L210S	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	774						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		CTTTTAGCTTTGGAGGAATTT	0.378000												
GBA2	57704	broad.mit.edu	37	9	35748547	35748547	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:35748547C>A	uc003zxw.2	-	1	679	c.155G>T	c.(154-156)CGA>CTA	p.R52L	GBA2_uc011lpb.1_Missense_Mutation_p.R52L|GBA2_uc011lpc.1_Missense_Mutation_p.R52L|GBA2_uc011lpd.1_Missense_Mutation_p.R52L|RGP1_uc011lpe.1_5'Flank|RGP1_uc011lpf.1_5'Flank	NM_020944	NP_065995	Q9HCG7	GBA2_HUMAN	bile acid beta-glucosidase	52	Extracellular (Potential).				bile acid metabolic process|glucosylceramide catabolic process|O-glycoside catabolic process	integral to membrane|microsome|plasma membrane|smooth endoplasmic reticulum	beta-glucosidase activity|glucosylceramidase activity			ovary(3)|skin(1)	4	all_epithelial(49;0.167)		Lung(28;0.00416)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TTTTGGGGGTCGGCTGTCTTC	0.542000												
C9orf79	286234	broad.mit.edu	37	9	90497878	90497878	+	Silent	SNP	C	C	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:90497878C>G	uc004app.3	+	1	107	c.72C>G	c.(70-72)CCC>CCG	p.P24P	C9orf79_uc004apo.1_Silent_p.P24P	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	24						integral to membrane				ovary(3)	3						GGATTCCACCCCCAGCTCCCA	0.562000												
BARX1	56033	broad.mit.edu	37	9	96715468	96715468	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:96715468G>A	uc010mrh.2	-	2	405	c.225C>T	c.(223-225)GCC>GCT	p.A75A	BARX1_uc004aud.2_5'UTR	NM_021570	NP_067545	Q9HBU1	BARX1_HUMAN	BARX homeobox 1	75						nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CCTTCAGCACGGCTGCGAAGA	0.711000												
PTCH1	5727	broad.mit.edu	37	9	98231285	98231285	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:98231285C>T	uc004avk.3	-	14	2186	c.1998G>A	c.(1996-1998)ACG>ACA	p.T666T	PTCH1_uc010mro.2_Silent_p.T515T|PTCH1_uc010mrp.2_Silent_p.T515T|PTCH1_uc010mrq.2_Silent_p.T515T|PTCH1_uc004avl.3_Silent_p.T515T|PTCH1_uc010mrr.2_Silent_p.T600T|PTCH1_uc004avm.3_Silent_p.T665T|PTCH1_uc010mrs.1_Silent_p.T334T	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	666	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				GGTCGTACTCCGTGCGGAGCT	0.622000									Basal_Cell_Nevus_syndrome			
TBC1D2	55357	broad.mit.edu	37	9	100983416	100983416	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:100983416C>T	uc011lvb.1	-	6	1253	c.1073G>A	c.(1072-1074)CGG>CAG	p.R358Q	TBC1D2_uc004ayq.2_Missense_Mutation_p.R358Q|TBC1D2_uc004ayr.2_Missense_Mutation_p.R140Q|TBC1D2_uc004ayo.3_Missense_Mutation_p.R358Q	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	358	Potential.|Interaction with RAC1.					cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		CAGCTCCAGCCGGTCCTTGTC	0.701000												
ANKS6	203286	broad.mit.edu	37	9	101536344	101536344	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:101536344G>T	uc004ayu.2	-	9	1657	c.1636C>A	c.(1636-1638)CTC>ATC	p.L546I	ANKS6_uc004ayt.2_Missense_Mutation_p.L245I|ANKS6_uc004ayv.1_Missense_Mutation_p.L8I|ANKS6_uc004ayw.1_Missense_Mutation_p.L128I|ANKS6_uc004ayx.1_RNA|ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	546										ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				AGTCTGGTGAGGGGAGCTCCG	0.562000												
ALDOB	229	broad.mit.edu	37	9	104193132	104193132	+	Missense_Mutation	SNP	T	T	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:104193132T>G	uc004bbk.2	-	2	120	c.38A>C	c.(37-39)AAG>ACG	p.K13T		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	13					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				GAGCTCCTTCTTCTGCTCCTG	0.517000												
ORM1	5004	broad.mit.edu	37	9	117087179	117087179	+	Splice_Site	SNP	T	T	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:117087179T>C	uc004bik.3	+	4	547	c.436_splice	c.e4+2	p.A146_splice	ORM1_uc011lxo.1_Splice_Site_p.A146_splice	NM_000607	NP_000598	P02763	A1AG1_HUMAN	orosomucoid 1 precursor						acute-phase response|regulation of immune system process|transport	extracellular space	protein binding				0		Myeloproliferative disorder(63;0.163)			Acenocoumarol(DB01418)|Alfentanil(DB00802)|Aprindine(DB01429)|Disopyramide(DB00280)|Penbutolol(DB01359)|Phenprocoumon(DB00946)|Quinidine(DB00908)|Tamsulosin(DB00706)	CTGTCTATGGTAGGCATGCTT	0.582000												
C5	727	broad.mit.edu	37	9	123723779	123723779	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:123723779G>A	uc004bkv.2	-	37	4599	c.4569C>T	c.(4567-4569)GCC>GCT	p.A1523A		NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	1523					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	ACTTGCACGCGGCTCCTTCAC	0.388000												
OR1K1	392392	broad.mit.edu	37	9	125562773	125562773	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:125562773C>T	uc011lze.1	+	1	372	c.372C>T	c.(370-372)TAC>TAT	p.Y124Y		NM_080859	NP_543135	Q8NGR3	OR1K1_HUMAN	olfactory receptor, family 1, subfamily K,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATGACTGCTACGTGGCCATCC	0.622000												
ZBTB34	403341	broad.mit.edu	37	9	129642652	129642652	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:129642652G>A	uc004bqm.3	+	2	1059	c.962G>A	c.(961-963)CGC>CAC	p.R321H		NM_001099270	NP_001092740	Q8NCN2	ZBT34_HUMAN	zinc finger and BTB domain containing 34	321					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GGGCGTGCCCGCCAGAAGCGG	0.572000												
ZER1	10444	broad.mit.edu	37	9	131512933	131512933	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:131512933C>A	uc004bwa.1	-	8	1754	c.1321G>T	c.(1321-1323)GTG>TTG	p.V441L		NM_006336	NP_006327	Q7Z7L7	ZER1_HUMAN	zyg-11 homolog B (C. elegans)-like	441	ARM 1.				ATP hydrolysis coupled proton transport|regulation of ubiquitin-protein ligase activity	Cul2-RING ubiquitin ligase complex|vacuolar proton-transporting V-type ATPase, V1 domain	protein binding|proton-transporting ATPase activity, rotational mechanism|ubiquitin-protein ligase activity			ovary(1)	1						TTCAGCACCACCTGGATAACC	0.602000												
CRAT	1384	broad.mit.edu	37	9	131862838	131862838	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:131862838G>A	uc004bxh.2	-	7	1218	c.936C>T	c.(934-936)GGC>GGT	p.G312G	CRAT_uc004bxg.2_Silent_p.G291G|CRAT_uc004bxk.3_Silent_p.G291G	NM_000755	NP_000746	P43155	CACP_HUMAN	carnitine acetyltransferase precursor	312					energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA oxidase|transport	endoplasmic reticulum|mitochondrial inner membrane|peroxisomal matrix	carnitine O-acetyltransferase activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)	L-Carnitine(DB00583)	GCCTGCTGCCGCCCCCATGCA	0.627000												
GTF3C4	9329	broad.mit.edu	37	9	135553727	135553727	+	Missense_Mutation	SNP	A	A	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:135553727A>T	uc010mzv.2	+	2	979	c.721A>T	c.(721-723)AGG>TGG	p.R241W	GTF3C4_uc010mzw.2_RNA	NM_012204	NP_036336	Q9UKN8	TF3C4_HUMAN	general transcription factor IIIC 4	241					transcription initiation from RNA polymerase III promoter	transcription factor TFIIIC complex	DNA binding|enzyme activator activity|histone acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(145;8.15e-07)|Epithelial(140;2.6e-05)		TGAGTTTCAGAGGAGACACAG	0.517000												
OLFM1	10439	broad.mit.edu	37	9	138011444	138011444	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:138011444G>A	uc010nar.2	+	6	1194	c.878G>A	c.(877-879)CGT>CAT	p.R293H	OLFM1_uc004cfl.3_Missense_Mutation_p.R275H|OLFM1_uc004cfn.3_Missense_Mutation_p.R44H	NM_014279	NP_055094	Q99784	NOE1_HUMAN	olfactomedin related ER localized protein	293	Olfactomedin-like.				nervous system development	endoplasmic reticulum lumen	protein binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(178;0.0333)		Epithelial(140;5.49e-08)|OV - Ovarian serous cystadenocarcinoma(145;9.68e-08)|all cancers(34;1.88e-07)		ACCTCCCACCGTCTCCCCCAC	0.532000												
MAMDC4	158056	broad.mit.edu	37	9	139753497	139753497	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:139753497C>T	uc004cjs.2	+	24	3047	c.2997C>T	c.(2995-2997)GGC>GGT	p.G999G	MAMDC4_uc011mej.1_Silent_p.G336G	NM_206920	NP_996803	Q6UXC1	AEGP_HUMAN	apical early endosomal glycoprotein precursor	1078	Extracellular (Potential).|MAM 6.				protein transport	integral to membrane				breast(4)|upper_aerodigestive_tract(2)|central_nervous_system(1)	7	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.52e-05)|Epithelial(140;0.000171)		GTGCTCAGGGCCAGCTGGCTG	0.682000												
NDOR1	27158	broad.mit.edu	37	9	140110805	140110805	+	Silent	SNP	C	C	T	rs143516871		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:140110805C>T	uc004clw.2	+	14	1842	c.1731C>T	c.(1729-1731)GAC>GAT	p.D577D	NDOR1_uc004clx.2_Silent_p.D586D|NDOR1_uc011mes.1_Silent_p.D570D|NDOR1_uc004cly.2_3'UTR	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	577					cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		GCAGCCCGGACGCAGCCGCGT	0.672000												
P2RY8	286530	broad.mit.edu	37	X	1584492	1584492	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:1584492C>T	uc004cpz.2	-	2	1208	c.960G>A	c.(958-960)ACG>ACA	p.T320T		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	320	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TCTCGCGGCGCGTGTCCAGGG	0.667000			T	CRLF2	B-ALL|Downs associated ALL							
FANCB	2187	broad.mit.edu	37	X	14868779	14868779	+	Silent	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:14868779A>C	uc004cwg.1	-	7	1612	c.1344T>G	c.(1342-1344)CCT>CCG	p.P448P	FANCB_uc004cwh.1_Silent_p.P448P	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	448					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					CACCACAAAGAGGAACAAGAC	0.299000								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia			
CHST7	56548	broad.mit.edu	37	X	46434041	46434041	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:46434041C>T	uc004dgt.2	+	1	850	c.675C>T	c.(673-675)TGC>TGT	p.C225C		NM_019886	NP_063939	Q9NS84	CHST7_HUMAN	chondroitin 6-sulfotransferase 7	225	Lumenal (Potential).				chondroitin sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	chondroitin 6-sulfotransferase activity|N-acetylglucosamine 6-O-sulfotransferase activity			breast(3)	3						ACACCGCCTGCGAGCGCAGCT	0.697000												
FTSJ1	24140	broad.mit.edu	37	X	48337473	48337473	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:48337473G>A	uc004djo.1	+	5	653	c.330G>A	c.(328-330)GCG>GCA	p.A110A	FTSJ1_uc004djl.2_Silent_p.A110A|FTSJ1_uc004djm.2_Silent_p.A110A|FTSJ1_uc004djn.1_Silent_p.A110A|FTSJ1_uc004djp.1_Silent_p.A110A|FTSJ1_uc011mlw.1_5'UTR	NM_012280	NP_036412	Q9UET6	RRMJ1_HUMAN	FtsJ homolog 1 isoform a	110					RNA methylation|rRNA processing		methyltransferase activity|nucleic acid binding				0						GCTGCCCTGCGGACCTAGTGG	0.607000												
NUDT10	170685	broad.mit.edu	37	X	51076061	51076061	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:51076061G>A	uc004dph.2	+	2	464	c.244G>A	c.(244-246)GTC>ATC	p.V82I	NUDT10_uc004dpi.3_Missense_Mutation_p.V82I	NM_153183	NP_694853	Q8NFP7	NUD10_HUMAN	nudix-type motif 10	82	Nudix hydrolase.					cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					GCTCCTGGGCGTCTTCGAACA	0.627000												
FOXO4	4303	broad.mit.edu	37	X	70320595	70320595	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:70320595C>T	uc004dys.1	+	2	868	c.515C>T	c.(514-516)ACC>ATC	p.T172I	FOXO4_uc010nkz.2_Missense_Mutation_p.T172I|FOXO4_uc004dyt.1_Missense_Mutation_p.T117I	NM_005938	NP_005929	P98177	FOXO4_HUMAN	forkhead box O4	172	Fork-head.				cell cycle arrest|cell differentiation|embryo development|G1 phase of mitotic cell cycle|insulin receptor signaling pathway|mitotic cell cycle G2/M transition DNA damage checkpoint|muscle organ development|negative regulation of angiogenesis|negative regulation of cell proliferation|negative regulation of smooth muscle cell differentiation|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			central_nervous_system(2)|prostate(1)	3	Renal(35;0.156)					AACGAGGCCACCGGCAAAAGC	0.517000											OREG0019856	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
PABPC5	140886	broad.mit.edu	37	X	90690958	90690958	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:90690958G>T	uc004efg.2	+	2	822	c.382G>T	c.(382-384)GCT>TCT	p.A128S	PABPC5_uc004eff.1_Intron	NM_080832	NP_543022	Q96DU9	PABP5_HUMAN	poly(A) binding protein, cytoplasmic 5	128	RRM 2.					cytoplasm	nucleotide binding|RNA binding			ovary(1)|lung(1)|pancreas(1)	3						CTTATTTTCTGCTTTTGGGAA	0.448000												
ESX1	80712	broad.mit.edu	37	X	103495216	103495216	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:103495216G>T	uc004ely.2	-	4	972	c.914C>A	c.(913-915)CCC>CAC	p.P305H		NM_153448	NP_703149	Q8N693	ESX1_HUMAN	extraembryonic, spermatogenesis, homeobox	305	7.|15 X 9 AA tandem repeats of P-P-x-x-P-x- P-P-x.				negative regulation of transcription, DNA-dependent|regulation of cell cycle	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGGCGGCCAGGGTGGCACAGG	0.761000												
CHRDL1	91851	broad.mit.edu	37	X	110035370	110035370	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:110035370A>C	uc004eou.3	-	2	389	c.40T>G	c.(40-42)TTT>GTT	p.F14V	CHRDL1_uc004eov.2_Missense_Mutation_p.F8V|CHRDL1_uc004eow.2_Missense_Mutation_p.F14V|CHRDL1_uc010nps.2_Missense_Mutation_p.F14V|CHRDL1_uc004eot.2_Missense_Mutation_p.F14V|CHRDL1_uc011mss.1_Missense_Mutation_p.F8V|CHRDL1_uc004eox.3_Missense_Mutation_p.F8V	NM_001143981	NP_001137453	Q9BU40	CRDL1_HUMAN	chordin-like 1 isoform 1 precursor	8					BMP signaling pathway|cell differentiation|nervous system development|ossification	extracellular region					0						AACAACGAAAAGATGTATTTC	0.358000												
CAPN6	827	broad.mit.edu	37	X	110491974	110491974	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:110491974A>C	uc004epc.1	-	10	1475	c.1307T>G	c.(1306-1308)CTC>CGC	p.L436R	CAPN6_uc011msu.1_Missense_Mutation_p.L181R	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	436	Domain III.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						GAGGTGGTGGAGGCGGAATTT	0.448000												
ELF4	2000	broad.mit.edu	37	X	129205342	129205342	+	Silent	SNP	G	G	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:129205342G>A	uc004evd.3	-	6	970	c.585C>T	c.(583-585)ATC>ATT	p.I195I	ELF4_uc004eve.3_Silent_p.I195I	NM_001421	NP_001412	Q99607	ELF4_HUMAN	E74-like factor 4	195	RUNX1-binding.				natural killer cell proliferation|NK T cell proliferation|positive regulation of transcription from RNA polymerase II promoter	PML body	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCCTAATGGGGATGCTGGGGT	0.587000			T	ERG	AML							
ARHGAP36	158763	broad.mit.edu	37	X	130220338	130220338	+	Silent	SNP	C	C	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:130220338C>T	uc004evz.2	+	10	1662	c.1317C>T	c.(1315-1317)CGC>CGT	p.R439R	ARHGAP36_uc004ewa.2_Silent_p.R427R|ARHGAP36_uc004ewb.2_Silent_p.R408R|ARHGAP36_uc004ewc.2_Silent_p.R303R	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	439					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						TTGCTAAGCGCGTGTGGAAGT	0.453000												
IDS	3423	broad.mit.edu	37	X	148579806	148579806	+	Silent	SNP	G	G	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:148579806G>T	uc011mxe.1	-	5	738	c.540C>A	c.(538-540)GCC>GCA	p.A180A	IDS_uc011mxf.1_Silent_p.A90A|IDS_uc011mxg.1_5'UTR|IDS_uc010nsu.1_Intron|IDS_uc004fcw.3_5'UTR|IDS_uc011mxh.1_Silent_p.A180A|IDS_uc011mxi.1_RNA	NM_000202	NP_000193	P22304	IDS_HUMAN	iduronate-2-sulfatase isoform a precursor	180						lysosome	iduronate-2-sulfatase activity|metal ion binding				0	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					AAAGCAGGTTGGCATGGAGTT	0.453000												
HELB	92797	broad.mit.edu	37	12	66731961	66731962	+	RNA	INS	-	-	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:66731961_66731962insA	uc010ssz.1	+	13		c.3447_3448insA			HELB_uc009zqt.1_RNA			Q8NG08	HELB_HUMAN	Homo sapiens helicase B mRNA, complete cds.						DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		AGTACCAAGATAAAAAAAGTTT	0.297												
GALNT14	79623	broad.mit.edu	37	2	31168648	31168649	+	Splice_Site	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:31168647_31168648A>AC	uc002rns.3	-	8	1397	c.757_splice	c.e8+1	p.G253_splice	GALNT14_uc002rnq.3_Splice_Site_p.G228_splice|GALNT14_uc010ymr.2_Splice_Site_p.G213_splice|GALNT14_uc002rnr.3_Splice_Site_p.G248_splice|GALNT14_uc010ezo.2_Splice_Site_p.G215_splice|GALNT14_uc010ezp.1_Intron	NM_001253826	NP_001240755	Q96FL9	GLT14_HUMAN	Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) (GALNT14), transcript variant 2, mRNA.	248						Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			cervix(1)|endometrium(3)|large_intestine(10)|liver(1)|lung(21)|ovary(1)|skin(3)|upper_aerodigestive_tract(3)	43	Acute lymphoblastic leukemia(172;0.155)					AGCCCAACTCACCCCCTCTGAG	0.510												
ATG3	64422	broad.mit.edu	37	3	112277267	112277267	+	Splice_Site	DEL	A	A	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:112277266_112277266TA>T	uc003dzd.3	-	2	183	c.73_splice	c.e2-1	p.E25_splice	ATG3_uc003dzc.3_Splice_Site_p.E25_splice|ATG3_uc010hqe.3_Splice_Site_p.E25_splice	NM_022488	NP_071933	Q9NT62	ATG3_HUMAN	Homo sapiens ATG3 autophagy related 3 homolog (S. cerevisiae) (ATG3), mRNA.	25					autophagic vacuole assembly|mitochondrial fragmentation involved in apoptosis|protein targeting to membrane|protein ubiquitination	cytoplasmic ubiquitin ligase complex|cytosol	Atg12 ligase activity|Atg8 ligase activity|enzyme binding			breast(1)|kidney(1)|large_intestine(1)|lung(3)|ovary(3)	9						CTTTGATTCCTAAAAAAAGCA	0.323												
ARAP3	64411	broad.mit.edu	37	5	141060073	141060073	+	Splice_Site	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:141060072_141060072TG>T	uc003llm.3	-	2	62	c.-16_splice	c.e2-1		ARAP3_uc003lln.3_Intron|ARAP3_uc003llo.1_5'UTR	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	Homo sapiens ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 (ARAP3), mRNA.						cytoskeleton organization|negative regulation of Rho protein signal transduction|negative regulation of cell migration|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|Rho GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			NS(1)|breast(7)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(13)|lung(14)|ovary(1)|prostate(2)|skin(4)|stomach(1)	53						AGGCCATTGCTGGGGGGAGGG	0.652												
COPB1	1315	broad.mit.edu	37	11	14510133	14510133	+	Splice_Site	DEL	A	A	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:14510132_14510132TA>T	uc001mlh.2	-	6	853	c.607_splice	c.e6-1	p.D203_splice	COPB1_uc001mli.2_Splice_Site_p.D203_splice|COPB1_uc001mlg.2_Splice_Site_p.D203_splice	NM_001144061	NP_057535	P53618	COPB_HUMAN	Homo sapiens coatomer protein complex, subunit beta 1 (COPB1), transcript variant 2, mRNA.	203					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|ER-Golgi intermediate compartment|cytosol|plasma membrane	protein binding|structural molecule activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(9)|lung(12)|ovary(1)|prostate(1)|skin(1)|stomach(1)|urinary_tract(2)	36						AGCTCGATCCTAAAAAAAATA	0.294												
KAT2A	2648	broad.mit.edu	37	17	40267056	40267056	+	Splice_Site	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:40267055_40267055TG>T	uc002hyx.2	-	13	1936	c.1876_splice	c.e13-1	p.G626_splice	DHX58_uc002hyv.3_5'Flank|DHX58_uc002hyw.3_5'Flank|DHX58_uc010wgf.1_5'Flank	NM_021078	NP_066564	Q92830	KAT2A_HUMAN	Homo sapiens K(lysine) acetyltransferase 2A (KAT2A), mRNA.	626	N-acetyltransferase.				chromatin remodeling|histone deubiquitination|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	H3 histone acetyltransferase activity|histone deacetylase binding|protein binding|transcription coactivator activity			central_nervous_system(1)|endometrium(3)|large_intestine(1)|lung(4)|ovary(1)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	18						GGAGAAACCCTGGGGGGTGGA	0.577												
COL16A1	1307	broad.mit.edu	37	1	32157042	32157043	+	Frame_Shift_Ins	INS	-	-	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:32157042_32157043insG	uc001btk.1	-	19	1738_1739	c.1373_1374insC	c.(1372-1374)CCTfs	p.P458fs	COL16A1_uc001btj.1_Frame_Shift_Ins_p.P287fs|COL16A1_uc001btl.3_Frame_Shift_Ins_p.P458fs	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	458	Triple-helical region 9 (COL9) with 3 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		GTCCTATCCCAGGGGGTCCAGG	0.653												
CCDC30	728621	broad.mit.edu	37	1	43055135	43055135	+	Frame_Shift_Del	DEL	A	A	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:43055135delA	uc009vwk.1	+	9	1474	c.1364delA	c.(1363-1365)GAAfs	p.E455fs	CCDC30_uc001chm.2_Frame_Shift_Del_p.E153fs|CCDC30_uc001chn.2_Frame_Shift_Del_p.E244fs|CCDC30_uc001chp.2_Frame_Shift_Del_p.E269fs	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	455	Potential.										0						CTGGAAAATGAAAAAAGAAAA	0.343												
KCND3	3752	broad.mit.edu	37	1	112329567	112329567	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:112329567delT	uc001ebu.1	-	3	1748	c.1268delA	c.(1267-1269)AAGfs	p.K423fs	KCND3_uc001ebv.1_Frame_Shift_Del_p.K423fs	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	423	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		GAGGCTTACCTTTTGTGCCCT	0.562												
KIAA0907	22889	broad.mit.edu	37	1	155886421	155886422	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:155886421_155886422insCT	uc001fmi.1	-	12	1571_1572	c.1547_1548insAG	c.(1546-1548)AGGfs	p.R516fs	KIAA0907_uc001fmj.1_Frame_Shift_Ins_p.R516fs|KIAA0907_uc009wrk.1_Frame_Shift_Ins_p.R373fs|KIAA0907_uc009wrl.1_RNA	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	516											0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			CTTACCTGTCCCTCTCTCTCTC	0.396												
PCP4L1	654790	broad.mit.edu	37	1	161254130	161254130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:161254130delA	uc001gad.2	+	3	314	c.66delA	c.(64-66)GGAfs	p.G22fs		NM_001102566	NP_001096036	A6NKN8	PC4L1_HUMAN	Purkinje cell protein 4 like 1	22											0	all_cancers(52;4.16e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			TATCTGCAGGAAAAGCTGGCA	0.507												
C1orf9	51430	broad.mit.edu	37	1	172558656	172558658	+	In_Frame_Del	DEL	TAT	TAT	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:172558656_172558658delTAT	uc001giq.3	+	18	2731_2733	c.2415_2417delTAT	c.(2413-2418)AATATT>AAT	p.I807del	C1orf9_uc010pmm.1_In_Frame_Del_p.I807del|C1orf9_uc009wwd.2_In_Frame_Del_p.I763del|C1orf9_uc010pmn.1_Intron|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	807					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		TAATGGATAATATTATAAAAGAA	0.335												
ELF3	1999	broad.mit.edu	37	1	201980293	201980293	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:201980293delT	uc001gxg.3	+	1	3221	c.29delT	c.(28-30)ATTfs	p.I10fs	ELF3_uc001gxi.3_Frame_Shift_Del_p.I10fs|ELF3_uc001gxh.3_Frame_Shift_Del_p.I10fs	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	10					epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						ATTAGCAACATTTTTAGCAAC	0.567												
CSGALNACT2	55454	broad.mit.edu	37	10	43650701	43650701	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:43650701delC	uc001jan.2	+	2	439	c.104delC	c.(103-105)GCCfs	p.A35fs	CSGALNACT2_uc001jam.1_Frame_Shift_Del_p.A35fs	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	35	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						CTGGAATGTGCCCCCCAGACT	0.458												
JMJD1C	221037	broad.mit.edu	37	10	64966902	64966903	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:64966902_64966903insT	uc001jmn.2	-	10	4826_4827	c.4526_4527insA	c.(4525-4527)AATfs	p.N1509fs	JMJD1C_uc001jml.2_Frame_Shift_Ins_p.N1290fs|JMJD1C_uc001jmm.2_Frame_Shift_Ins_p.N1221fs|JMJD1C_uc010qiq.1_Frame_Shift_Ins_p.N1327fs|JMJD1C_uc009xpi.2_Frame_Shift_Ins_p.N1327fs|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc009xpk.1_Frame_Shift_Ins_p.N546fs	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	1509					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					AAAGTGTCTGATTTTTTATAGC	0.401												
ZMYND17	118490	broad.mit.edu	37	10	75187827	75187829	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:75187827_75187829delTTC	uc001jud.2	-	2	280_282	c.214_216delGAA	c.(214-216)GAAdel	p.E72del	ZMYND17_uc001juc.2_In_Frame_Del_p.E72del|ZMYND17_uc009xrh.2_In_Frame_Del_p.E95del|ZMYND17_uc009xrg.2_5'UTR	NM_001024593	NP_001019764	Q4VC12	ZMY17_HUMAN	zinc finger, MYND domain containing 17	72							zinc ion binding			ovary(1)	1	Prostate(51;0.0119)					CTCACTTATATTCTTCATAGCTT	0.424												
EBF3	253738	broad.mit.edu	37	10	131666125	131666125	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:131666125delC	uc001lki.1	-	9	865	c.806delG	c.(805-807)GGTfs	p.G269fs		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	278	IPT/TIG.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		GACGGTGGCACCCCCCGTGGT	0.577												
ILK	3611	broad.mit.edu	37	11	6629292	6629293	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:6629292_6629293insC	uc001mee.2	+	3	241_242	c.106_107insC	c.(106-108)TCCfs	p.S36fs	ILK_uc001mef.2_Frame_Shift_Ins_p.S36fs|ILK_uc010rap.1_Intron|ILK_uc010raq.1_Frame_Shift_Ins_p.S36fs|ILK_uc001meg.2_5'UTR|ILK_uc001meh.2_Frame_Shift_Ins_p.S36fs|ILK_uc001mei.2_5'Flank	NM_001014794	NP_001014794	Q13418	ILK_HUMAN	integrin-linked kinase	36	ANK 2.|Interaction with LIMS1.				cell junction assembly|cell proliferation|cell-matrix adhesion|integrin-mediated signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent	cytosol|focal adhesion	ATP binding|protein serine/threonine kinase activity			central_nervous_system(1)	1		Breast(177;7.61e-05)|Medulloblastoma(188;0.00263)|all_neural(188;0.026)|all_lung(207;0.152)		Epithelial(150;5.49e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00012)|Lung(200;0.00942)|LUSC - Lung squamous cell carcinoma(625;0.0163)		TCATGGCTTCTCCCCCTTGCAC	0.525												
TSGA10IP	254187	broad.mit.edu	37	11	65714876	65714876	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:65714876delC	uc001ogk.1	+	5	612	c.580delC	c.(580-582)CCCfs	p.P194fs	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_Intron	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	194											0						AGGATCAGAGCCCCCCAGTGG	0.642												
SF3B2	10992	broad.mit.edu	37	11	65828076	65828076	+	Frame_Shift_Del	DEL	A	A	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:65828076delA	uc001ogy.1	+	14	1693	c.1653delA	c.(1651-1653)TCAfs	p.S551fs		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	551					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						CCATGAAGTCAAAAATGCGAG	0.448												
CWF19L2	143884	broad.mit.edu	37	11	107207380	107207381	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:107207380_107207381insA	uc010rvp.1	-	15	2291_2292	c.2261_2262insT	c.(2260-2262)TTGfs	p.L754fs	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_RNA	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	754							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		TATTAGTTTCCAAAAAAATGCA	0.327												
BCL9L	283149	broad.mit.edu	37	11	118770112	118770112	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:118770112delG	uc001pug.2	-	8	4477	c.3512delC	c.(3511-3513)CCGfs	p.P1171fs	BCL9L_uc009zal.2_Frame_Shift_Del_p.P1166fs	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1171	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		CATGGCGGGCGGGGGCTCATG	0.657												
NCAPD2	9918	broad.mit.edu	37	12	6631161	6631162	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:6631161_6631162insT	uc001qoo.2	+	15	1958_1959	c.1912_1913insT	c.(1912-1914)ATTfs	p.I638fs	NCAPD2_uc009zen.1_Frame_Shift_Ins_p.I510fs|NCAPD2_uc010sfd.1_Frame_Shift_Ins_p.I593fs	NM_014865	NP_055680	Q15021	CND1_HUMAN	non-SMC condensin I complex, subunit D2	638					cell division|mitotic chromosome condensation	condensin core heterodimer|cytoplasm	histone binding			ovary(2)|lung(1)|breast(1)|kidney(1)	5						TACAGAGGCCATTGGCATCATC	0.446												
MRPS35	60488	broad.mit.edu	37	12	27908309	27908309	+	Frame_Shift_Del	DEL	A	A	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:27908309delA	uc001rih.2	+	8	946	c.898delA	c.(898-900)AAAfs	p.K300fs	MRPS35_uc001rii.2_3'UTR	NM_021821	NP_068593	P82673	RT35_HUMAN	mitochondrial ribosomal protein S35 precursor	300	Potential.				DNA damage response, detection of DNA damage	mitochondrial small ribosomal subunit					0	Lung SC(9;0.0873)					TGTTAGTCTTAAAAATGAGGA	0.323												
ALG10	84920	broad.mit.edu	37	12	34179403	34179404	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:34179403_34179404insT	uc001rlm.2	+	3	1294_1295	c.975_976insT	c.(973-978)CTGTTTfs	p.L325fs		NM_032834	NP_116223	Q5BKT4	AG10A_HUMAN	asparagine-linked glycosylation 10 homolog	325_326	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			skin(1)	1	Lung NSC(5;3.82e-05)|Acute lymphoblastic leukemia(23;0.0142)|all_hematologic(23;0.0429)	Lung NSC(34;0.204)|all_lung(34;0.235)				GTAGAATTCTGTTTTTTGTGGT	0.322												
ENDOU	8909	broad.mit.edu	37	12	48106392	48106392	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:48106392delT	uc001rpu.1	-	8	1033	c.879delA	c.(877-879)AAAfs	p.K293fs	ENDOU_uc010sll.1_Frame_Shift_Del_p.K59fs|ENDOU_uc001rpt.1_Frame_Shift_Del_p.K252fs|ENDOU_uc010slm.1_Frame_Shift_Del_p.K230fs	NM_006025	NP_006016	P21128	ENDOU_HUMAN	placental protein 11 precursor	293					female pregnancy|immune response|proteolysis	cytoplasm|extracellular space|plasma membrane	endoribonuclease activity|growth factor activity|manganese ion binding|polysaccharide binding|RNA binding|scavenger receptor activity|serine-type peptidase activity			ovary(2)|pancreas(1)	3						TAACCTTGCCTTTTTTTACCT	0.502												
HELB	92797	broad.mit.edu	37	12	66731961	66731962	+	RNA	INS	-	-	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:66731961_66731962insA	uc010ssz.1	+	13		c.3447_3448insA			HELB_uc009zqt.1_RNA			Q8NG08	HELB_HUMAN	Homo sapiens helicase B mRNA, complete cds.						DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		AGTACCAAGATAAAAAAAGTTT	0.297												
KNTC1	9735	broad.mit.edu	37	12	123028174	123028175	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:123028174_123028175insA	uc001ucv.2	+	7	714_715	c.551_552insA	c.(550-552)GCAfs	p.A184fs	KNTC1_uc010taf.1_Frame_Shift_Ins_p.A184fs	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	184					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		TTCAGTACAGCAAAAAAGGTAA	0.267												
KTN1	3895	broad.mit.edu	37	14	56146293	56146295	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:56146293_56146295delAGA	uc001xcb.2	+	44	4261_4263	c.3959_3961delAGA	c.(3958-3963)GAGAAG>GAG	p.K1321del	KTN1_uc001xce.2_In_Frame_Del_p.K1264del|KTN1_uc001xcc.2_In_Frame_Del_p.K1321del|KTN1_uc001xcd.2_In_Frame_Del_p.K1270del|KTN1_uc010trb.1_In_Frame_Del_p.K1293del|KTN1_uc001xcf.1_In_Frame_Del_p.K1270del|KTN1_uc010aoq.2_In_Frame_Del_p.K559del|KTN1_uc010trc.1_In_Frame_Del_p.K298del|KTN1_uc001xcg.2_In_Frame_Del_p.K254del	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	1321	Lumenal (Potential).|Potential.				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						GAGTCTTCTGAGAAGGAGACAAT	0.374			T	RET	papillary thryoid							
VSX2	338917	broad.mit.edu	37	14	74706508	74706508	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:74706508delG	uc001xpq.2	+	1	334	c.244delG	c.(244-246)GGGfs	p.G82fs		NM_182894	NP_878314	P58304	VSX2_HUMAN	visual system homeobox 2	82	Pro-rich.				multicellular organismal development|response to stimulus|visual perception	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00154)		TCTGGGGCCCGGGGGGCTCCC	0.741												
XYLT1	64131	broad.mit.edu	37	16	17564358	17564358	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:17564358delC	uc002dfa.2	-	1	381	c.296delG	c.(295-297)GGAfs	p.G99fs		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	99	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						ggggccgcctccccgcgcccg	0.448												
MYBBP1A	10514	broad.mit.edu	37	17	4451274	4451276	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:4451274_4451276delGAG	uc002fyb.3	-	13	1863_1865	c.1801_1803delCTC	c.(1801-1803)CTCdel	p.L601del	MYBBP1A_uc002fxz.3_In_Frame_Del_p.L601del	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	601				L -> F (in Ref. 1; AAF33021).	nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						GGATGCCCACGAGGAGCAGAAGG	0.645												
AOC3	8639	broad.mit.edu	37	17	41003845	41003846	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:41003845_41003846insC	uc002ibv.2	+	1	645_646	c.485_486insC	c.(484-486)GGCfs	p.G162fs		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	162	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	CGTCATGGAGGCCCCCTGCCCT	0.614												
TOM1L1	10040	broad.mit.edu	37	17	52991190	52991191	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:52991190_52991191delCA	uc002iud.2	+	5	629_630	c.454_455delCA	c.(454-456)CAGfs	p.Q152fs	TOM1L1_uc002iub.2_Frame_Shift_Del_p.Q117fs|TOM1L1_uc002iuc.2_Frame_Shift_Del_p.Q152fs|TOM1L1_uc010dca.1_Frame_Shift_Del_p.Q152fs|TOM1L1_uc010wnb.1_Frame_Shift_Del_p.Q145fs|TOM1L1_uc010wnc.1_Frame_Shift_Del_p.Q75fs|TOM1L1_uc010dbz.2_Frame_Shift_Del_p.Q75fs|TOM1L1_uc010wnd.1_Frame_Shift_Del_p.Q75fs|TOM1L1_uc010dcb.1_RNA	NM_005486	NP_005477	O75674	TM1L1_HUMAN	target of myb1-like 1	152	VHS.				intracellular protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	cytosol|endosome membrane|Golgi stack|lysosome	SH3 domain binding|ubiquitin binding			ovary(1)	1						GAAAGGCGTTCAGTTTCCTCCC	0.465												
DOCK6	57572	broad.mit.edu	37	19	11356341	11356341	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:11356341delC	uc002mqs.3	-	9	962	c.921delG	c.(919-921)GGGfs	p.G307fs		NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	307					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CCCGAAGCAGCCCCTTCATGG	0.557												
AXL	558	broad.mit.edu	37	19	41765646	41765647	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:41765646_41765647insC	uc010ehj.2	+	20	2712_2713	c.2522_2523insC	c.(2521-2523)GACfs	p.D841fs	CYP2F1_uc010xvw.1_Intron|HNRNPUL1_uc002opz.3_5'Flank|HNRNPUL1_uc002oqa.3_5'Flank|AXL_uc010ehk.2_Frame_Shift_Ins_p.D832fs|HNRNPUL1_uc010ehl.1_5'Flank	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	841	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GGAGGAGCTGACCCCCCAACCC	0.594												
NLRP2	55655	broad.mit.edu	37	19	55512184	55512184	+	Frame_Shift_Del	DEL	A	A	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:55512184delA	uc002qij.2	+	13	3193	c.3107delA	c.(3106-3108)GAAfs	p.E1036fs	NLRP2_uc010yfp.1_Frame_Shift_Del_p.E1013fs|NLRP2_uc010esn.2_Frame_Shift_Del_p.E1012fs|NLRP2_uc010eso.2_Frame_Shift_Del_p.E1033fs|NLRP2_uc010esp.2_Frame_Shift_Del_p.E1014fs	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	1036					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GAAATAGAAGAAAAAAACCCA	0.413												
ITSN2	50618	broad.mit.edu	37	2	24484521	24484521	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:24484521delT	uc002rfe.2	-	21	2704	c.2446delA	c.(2446-2448)ATGfs	p.M816fs	ITSN2_uc002rff.2_Frame_Shift_Del_p.M789fs|ITSN2_uc002rfg.2_Frame_Shift_Del_p.M816fs	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	816	SH3 1.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTTGATGGCATTTTTTCTACA	0.378												
C2orf55	343990	broad.mit.edu	37	2	99448925	99448925	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:99448925delC	uc002szf.1	-	5	720	c.426delG	c.(424-426)GGGfs	p.G142fs		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	142											0						TGGCAGGAAGCCCCCCTGGAG	0.522												
RANBP2	5903	broad.mit.edu	37	2	109381418	109381419	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:109381418_109381419insT	uc002tem.3	+	20	4549_4550	c.4423_4424insT	c.(4423-4425)GTTfs	p.V1475fs		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1475					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TTTCAGATCTGTTTTTTCTACA	0.386												
HDAC4	9759	broad.mit.edu	37	2	240002823	240002823	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:240002823delG	uc002vyk.3	-	22	3495	c.2703delC	c.(2701-2703)CCCfs	p.P901fs	HDAC4_uc010fyy.2_Frame_Shift_Del_p.P858fs	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	901	Histone deacetylase.				B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		CGTCTCCCATGGGGGGGTCCA	0.602												
HRH3	11255	broad.mit.edu	37	20	60791510	60791510	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:60791510delC	uc002ycf.2	-	3	1187	c.890delG	c.(889-891)GGCfs	p.G297fs	HRH3_uc002ycg.2_Intron|HRH3_uc002ych.2_Intron|HRH3_uc002yci.2_Frame_Shift_Del_p.G297fs	NM_007232	NP_009163	Q9Y5N1	HRH3_HUMAN	histamine receptor H3	297	Poly-Gly.|Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|neurotransmitter secretion	integral to plasma membrane	histamine receptor activity				0	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;7.08e-07)		Histamine Phosphate(DB00667)	CACGGAGCCGCCCCCACCGCC	0.736												
ITSN1	6453	broad.mit.edu	37	21	35174739	35174740	+	Frame_Shift_Ins	INS	-	-	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr21:35174739_35174740insG	uc002yta.1	+	20	2578_2579	c.2310_2311insG	c.(2308-2313)AAAGGGfs	p.K770fs	DONSON_uc002ysn.1_Intron|ITSN1_uc002yth.3_Intron|ITSN1_uc002ysz.2_Intron|ITSN1_uc010gmg.2_Intron|ITSN1_uc010gmh.2_Intron|ITSN1_uc002ysw.2_Frame_Shift_Ins_p.K770fs|ITSN1_uc010gmi.2_Frame_Shift_Ins_p.K733fs|ITSN1_uc010gmj.2_Intron|ITSN1_uc002ysy.2_Intron|ITSN1_uc002ysx.2_Intron|ITSN1_uc002ytb.1_Intron|ITSN1_uc002ytc.1_Intron|ITSN1_uc002ytd.2_Intron|ITSN1_uc010gmk.2_Frame_Shift_Ins_p.K733fs|ITSN1_uc010gml.2_Intron|ITSN1_uc002ytj.2_Intron|ITSN1_uc010gmm.1_Intron|ITSN1_uc002yte.2_Frame_Shift_Ins_p.K704fs|ITSN1_uc002ytf.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	770_771	SH3 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						TGGAGGTTAAAGGGGAATGGGT	0.371												
ZDHHC8	29801	broad.mit.edu	37	22	20130375	20130375	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:20130375delG	uc002zrq.2	+	10	1328	c.1222delG	c.(1222-1224)GGGfs	p.G408fs	ZDHHC8_uc002zrr.1_Frame_Shift_Del_p.G408fs|ZDHHC8_uc010gsa.2_Frame_Shift_Del_p.G214fs	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	408	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					CTATGGGCCAGGGGGCCTGCA	0.672												
COL7A1	1294	broad.mit.edu	37	3	48616694	48616694	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:48616694delG	uc003ctz.2	-	61	5325	c.5324delC	c.(5323-5325)CCTfs	p.P1775fs	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1775	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ATCCAGCCCAGGGGGACCCCG	0.617												
STAB1	23166	broad.mit.edu	37	3	52551026	52551026	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:52551026delG	uc003dej.2	+	42	4464	c.4390delG	c.(4390-4392)GGGfs	p.G1464fs	STAB1_uc003dek.1_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1464	Extracellular (Potential).|EGF-like 11.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CCACGGCCATGGGGGCTGCTC	0.682												
PCGF3	10336	broad.mit.edu	37	4	728799	728799	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:728799delC	uc011bva.1	+	6	664	c.189delC	c.(187-189)CACfs	p.H63fs	PCGF3_uc003gbc.1_RNA|PCGF3_uc003gbd.1_RNA|PCGF3_uc003gbe.2_Frame_Shift_Del_p.H63fs|PCGF3_uc010ibh.2_Frame_Shift_Del_p.H63fs|PCGF3_uc003gbg.1_Frame_Shift_Del_p.H29fs|PCGF3_uc003gbh.2_Frame_Shift_Del_p.H29fs	NM_006315	NP_006306	Q3KNV8	PCGF3_HUMAN	ring finger protein 3	63					regulation of transcription, DNA-dependent|transcription, DNA-dependent	PcG protein complex	zinc ion binding				0						ACCAGAGCCACCCCCTGCAGT	0.607												
NKX6-1	4825	broad.mit.edu	37	4	85419145	85419145	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:85419145delC	uc003hpa.1	-	1	243	c.237delG	c.(235-237)GGGfs	p.G79fs		NM_006168	NP_006159	P78426	NKX61_HUMAN	NK6 transcription factor related, locus 1	79					detection of glucose|negative regulation of transcription from RNA polymerase II promoter|organ morphogenesis|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|type B pancreatic cell maturation	nucleus					0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.0013)		GGGATGAGAGCCCCCCCGTGG	0.542												
TBC1D9	23158	broad.mit.edu	37	4	141592064	141592064	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:141592064delT	uc010ioj.2	-	7	1348	c.1076delA	c.(1075-1077)AAGfs	p.K359fs		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	359	GRAM 2.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				GCTGTCTGCCTTTTCCACAAT	0.453												
POU5F2	134187	broad.mit.edu	37	5	93076713	93076713	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:93076713delT	uc003kkl.1	-	1	597	c.557delA	c.(556-558)AAGfs	p.K186fs	FAM172A_uc010jbd.2_Intron|FAM172A_uc011cuf.1_Intron|FAM172A_uc011cug.1_Intron|FAM172A_uc011cuh.1_Intron|FAM172A_uc011cui.1_Intron|FAM172A_uc011cuj.1_Intron	NM_153216	NP_694948	Q8N7G0	PO5F2_HUMAN	POU domain class 5, transcription factor 2	186	POU-specific.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(142;3.87e-05)|all_epithelial(76;4.59e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0415)|all cancers(79;2.03e-19)		CTTCAGCCACTTTTTCAGCAG	0.552												
HLA-DRA	3122	broad.mit.edu	37	6	32411022	32411024	+	In_Frame_Del	DEL	TCA	TCA	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:32411022_32411024delTCA	uc003obh.2	+	3	470_472	c.389_391delTCA	c.(388-393)CTCATC>CTC	p.I131del	HLA-DRA_uc003obi.2_Intron	NM_019111	NP_061984	P01903	DRA_HUMAN	major histocompatibility complex, class II, DR	131	Ig-like C1-type.|Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to plasma membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			ovary(1)|skin(1)	2						CCCAACGTCCTCATCTGTTTCAT	0.512									T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Kaposi_Sarcoma_Familial_Clustering_of			
TAPBP	6892	broad.mit.edu	37	6	33273073	33273073	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:33273073delG	uc003odx.1	-	4	732	c.561delC	c.(559-561)CCCfs	p.P187fs	TAPBP_uc010jus.1_Frame_Shift_Del_p.P205fs|TAPBP_uc003ody.2_Frame_Shift_Del_p.P187fs|TAPBP_uc003odz.2_Frame_Shift_Del_p.P187fs|TAPBP_uc010jut.1_Frame_Shift_Del_p.P100fs|TAPBP_uc011drc.1_Frame_Shift_Del_p.P187fs	NM_003190	NP_003181	O15533	TPSN_HUMAN	tapasin isoform 1 precursor	187	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|immune response|peptide antigen stabilization|protein complex assembly|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|MHC class I peptide loading complex|microsome	MHC class I protein binding|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|unfolded protein binding			ovary(1)	1						CCTCGGAGGTGGGGGGCATGT	0.627												
TXLNB	167838	broad.mit.edu	37	6	139564084	139564084	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:139564084delG	uc011eds.1	-	10	1799	c.1634delC	c.(1633-1635)CCTfs	p.P545fs		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	545						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		AGGGATCAGAGGGGGTTGCTC	0.587												
SHPRH	257218	broad.mit.edu	37	6	146256569	146256570	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:146256569_146256570insA	uc003qlf.2	-	12	2976_2977	c.2577_2578insT	c.(2575-2580)TTTGGGfs	p.F859fs	SHPRH_uc003qld.2_Frame_Shift_Ins_p.F859fs|SHPRH_uc003qle.2_Frame_Shift_Ins_p.F859fs|SHPRH_uc003qlg.1_Frame_Shift_Ins_p.F415fs|SHPRH_uc003qlj.1_Frame_Shift_Ins_p.F748fs|SHPRH_uc003qlh.2_5'Flank	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	859_860	Helicase ATP-binding; second part.				DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		ACCACTAACCCAAAAAGATCTG	0.371												
TULP4	56995	broad.mit.edu	37	6	158923160	158923160	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:158923160delC	uc003qrf.2	+	13	3822	c.2465delC	c.(2464-2466)GCCfs	p.A822fs	TULP4_uc003qrg.2_Intron	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	822					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		GTCTTTAGTGCCCCCCAGGAG	0.672												
JAZF1	221895	broad.mit.edu	37	7	27934891	27934891	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:27934891delG	uc003szn.2	-	3	574	c.333delC	c.(331-333)CCCfs	p.P111fs	JAZF1_uc003szm.2_Frame_Shift_Del_p.P47fs	NM_175061	NP_778231	Q86VZ6	JAZF1_HUMAN	JAZF zinc finger 1	111					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcriptional repressor complex	nucleic acid binding|transcription corepressor activity|zinc ion binding		JAZF1/SUZ12(131)	soft_tissue(98)|endometrium(33)	131						GTGGGGTCACGGGGGGAGTAA	0.612			T	SUZ12	endometrial stromal tumours							
GPR141	353345	broad.mit.edu	37	7	37780680	37780680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:37780680delT	uc003tfm.1	+	1	685	c.685delT	c.(685-687)TTTfs	p.F229fs	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	229	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						GAAAAACCTATTTTTTATAGG	0.433												
GPC2	221914	broad.mit.edu	37	7	99767927	99767927	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr7:99767927delC	uc003utv.2	-	10	1834	c.1666delG	c.(1666-1668)GCAfs	p.A556fs	GAL3ST4_uc003utt.2_5'Flank|GAL3ST4_uc003utu.2_5'Flank|GAL3ST4_uc010lgq.2_5'Flank|GPC2_uc010lgr.2_RNA	NM_152742	NP_689955	Q8N158	GPC2_HUMAN	glypican 2 precursor	556						anchored to membrane|endoplasmic reticulum|extracellular space|plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)|pancreas(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCAATAGATGCCCCCCCACTC	0.617												
PTK2B	2185	broad.mit.edu	37	8	27308396	27308398	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr8:27308396_27308398delAGG	uc003xfn.1	+	30	3279_3281	c.2471_2473delAGG	c.(2470-2475)CAGGAG>CAG	p.E826del	PTK2B_uc003xfo.1_In_Frame_Del_p.E826del|PTK2B_uc003xfp.1_In_Frame_Del_p.E826del|PTK2B_uc003xfq.1_In_Frame_Del_p.E784del|PTK2B_uc003xfs.1_In_Frame_Del_p.E23del	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	826	Interaction with TGFB1I1 (By similarity).				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		TGGCTCAGGCAGGAGGAGAAGTC	0.606												
RBM18	92400	broad.mit.edu	37	9	125004207	125004207	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:125004207delT	uc004bma.2	-	6	695	c.529delA	c.(529-531)AGGfs	p.R177fs	RBM18_uc004blz.2_RNA|RBM18_uc010mvy.2_RNA|RBM18_uc011lyp.1_RNA	NM_033117	NP_149108	Q96H35	RBM18_HUMAN	RNA binding motif protein 18	177							nucleotide binding|RNA binding				0						GGAGTAGTCCTTTTTTTATCT	0.403												
MSL3	10943	broad.mit.edu	37	X	11779022	11779022	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chrX:11779022delC	uc004cuw.2	+	4	453	c.348delC	c.(346-348)CTCfs	p.L116fs	MSL3_uc004cuv.1_Frame_Shift_Del_p.L116fs|MSL3_uc004cux.2_Frame_Shift_Del_p.L57fs|MSL3_uc011mig.1_5'UTR|MSL3_uc011mih.1_Frame_Shift_Del_p.L104fs|MSL3_uc004cuy.2_5'UTR|MSL3_uc011mii.1_5'UTR	NM_078629	NP_523353	Q8N5Y2	MS3L1_HUMAN	male-specific lethal 3-like 1 isoform a	116					histone H4-K16 acetylation|multicellular organismal development|transcription from RNA polymerase II promoter	MSL complex	DNA binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TAAAAGGCCTCCCCACTGAAG	0.423												
TMEM51	55092	broad.mit.edu	37	1	15545912	15545913	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:15545911_15545912C>CA	uc001avw.4	+	3	953_954	c.434_435C>CA	c.(433-435)gcafs	p.A145fs	TMEM51_uc010obk.2_Frame_Shift_Ins_p.A145fs|TMEM51_uc001avz.3_3'UTR|TMEM51_uc001avy.3_Frame_Shift_Ins_p.A145fs|TMEM51_uc001avx.3_Frame_Shift_Ins_p.A145fs	NM_001136216	NP_060492	Q9NW97	TMM51_HUMAN	Homo sapiens transmembrane protein 51 (TMEM51), transcript variant 1, mRNA.	145						integral to membrane				breast(1)|central_nervous_system(1)|cervix(3)|large_intestine(2)|lung(5)|prostate(2)	14		Renal(390;0.00145)|Breast(348;0.00186)|Colorectal(325;0.00215)|all_lung(284;0.00459)|Lung NSC(340;0.0104)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;2.07e-06)|COAD - Colon adenocarcinoma(227;7.14e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000175)|KIRC - Kidney renal clear cell carcinoma(229;0.00141)|STAD - Stomach adenocarcinoma(313;0.00644)|READ - Rectum adenocarcinoma(331;0.0751)		TACTCAGAAGCAAGGGGAGAGG	0.564												
EXTL1	2134	broad.mit.edu	37	1	26349533	26349534	+	In_Frame_Ins	INS	-	-	CCT			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:26349532_26349533G>GCCT	uc001blf.3	+	0	1262_1263	c.395_396G>GCCT	c.(394-396)tgc>tGCCT	p.C132C		NM_004455	NP_004446	Q92935	EXTL1_HUMAN	Homo sapiens exostoses (multiple)-like 1 (EXTL1), mRNA.	132					skeletal system development	integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|protein binding			central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(4)|lung(10)|ovary(1)|stomach(1)|urinary_tract(1)	23		Colorectal(325;3.46e-05)|Lung NSC(340;6.18e-05)|all_lung(284;9.43e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;6.44e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000954)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00594)|READ - Rectum adenocarcinoma(331;0.0649)		GCTGGGGCCTGCCTCCTCCTCC	0.599												
COL16A1	1307	broad.mit.edu	37	1	32157043	32157044	+	Frame_Shift_Ins	INS	-	-	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:32157042_32157043A>AG	uc001btk.1	-	18	1738_1739	c.1373_1374T>CT	c.(1372-1374)cctfs	p.P458fs	COL16A1_uc001btj.1_Frame_Shift_Ins_p.P287fs|COL16A1_uc001btl.4_Frame_Shift_Ins_p.P458fs	NM_001856	NP_001847	Q07092	COGA1_HUMAN	Homo sapiens collagen, type XVI, alpha 1 (COL16A1), mRNA.	458	Triple-helical region 9 (COL9) with 3 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			breast(4)|central_nervous_system(2)|cervix(1)|endometrium(5)|kidney(2)|large_intestine(7)|lung(15)|ovary(8)|prostate(4)	48		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		GTCCTATCCCAGGGGGTCCAGG	0.653												
SSX2IP	117178	broad.mit.edu	37	1	85135370	85135370	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:85135369_85135369GT>G	uc001dki.3	-	4	747	c.421_421AC>C	c.(421-423)cttfs	p.L141fs	SSX2IP_uc001dkf.3_Frame_Shift_Del_p.L114fs|SSX2IP_uc001dkh.3_Frame_Shift_Del_p.L141fs|SSX2IP_uc010orz.2_Frame_Shift_Del_p.L114fs|SSX2IP_uc001dkg.3_Non-coding_Transcript|SSX2IP_uc010osa.2_Frame_Shift_Del_p.L114fs|SSX2IP_uc001dkj.3_Frame_Shift_Del_p.L141fs|SSX2IP_uc009wci.3_Intron|SSX2IP_uc001dkk.1_Frame_Shift_Del_p.L137fs	NM_014021	NP_001159767	Q9Y2D8	ADIP_HUMAN	Homo sapiens synovial sarcoma, X breakpoint 2 interacting protein (SSX2IP), transcript variant 5, mRNA.	141					cell adhesion	nucleus|protein complex				endometrium(5)|kidney(1)|large_intestine(4)|lung(6)|ovary(2)|urinary_tract(1)	19				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		TCTACCTTAAGTTTTGAGTAG	0.338												
SLC25A24	29957	broad.mit.edu	37	1	108700183	108700184	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:108700182_108700183A>AT	uc001dvn.4	-	4	784_785	c.570_571T>AT	c.(568-573)aaatccfs	p.K190fs	SLC25A24_uc001dvm.3_Frame_Shift_Ins_p.K171fs	NM_013386	NP_037518	Q6NUK1	SCMC1_HUMAN	Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 (SLC25A24), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA.	190					transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding	p.K171fs*29(1)|p.K190fs*29(1)		endometrium(1)|kidney(1)|large_intestine(7)|lung(5)|ovary(1)|upper_aerodigestive_tract(1)	16		all_epithelial(167;3.72e-05)|all_lung(203;0.000567)|Lung NSC(277;0.0011)|Melanoma(281;0.211)		Colorectal(144;0.0345)|Lung(183;0.0971)|COAD - Colon adenocarcinoma(174;0.127)|Epithelial(280;0.134)		CATTGTCCGGATTTTTTTTCGT	0.450												
KIAA0907	22889	broad.mit.edu	37	1	155886422	155886423	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:155886421_155886422C>CCT	uc001fmi.1	-	11	1571_1572	c.1547_1548G>AGG	c.(1546-1548)aggfs	p.R516fs	KIAA0907_uc001fmj.1_Frame_Shift_Ins_p.R516fs|KIAA0907_uc009wrl.1_Non-coding_Transcript	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	Homo sapiens KIAA0907 (KIAA0907), mRNA.	516								p.R516fs*21(2)		breast(1)|endometrium(2)|kidney(1)|large_intestine(4)|liver(1)|lung(11)|urinary_tract(1)	21	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			CTTACCTGTCCCTCTCTCTCTC	0.396												
CENPF	1063	broad.mit.edu	37	1	214818826	214818827	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr1:214818825_214818826C>CA	uc001hkm.3	+	12	6086_6087	c.5912_5913C>CA	c.(5911-5913)tcafs	p.S1971fs		NM_016343	NP_057427	P49454	CENPF_HUMAN	Homo sapiens centromere protein F, 350/400kDa (mitosin) (CENPF), mRNA.	2067					DNA replication|G2 phase of mitotic cell cycle|cell differentiation|cell division|cell proliferation|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			NS(2)|breast(2)|central_nervous_system(4)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(37)|lung(47)|ovary(7)|prostate(3)|skin(6)|stomach(1)|urinary_tract(1)	126				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		GATACTATGTCAAAAAAAACCA	0.411												
PXDN	7837	broad.mit.edu	37	2	1653207	1653207	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:1653206_1653206GT>G	uc002qxa.3	-	16	2410	c.2346_2346AC>C	c.(2344-2346)aacfs	p.N782fs		NM_012293	NP_036425	Q92626	PXDN_HUMAN	Homo sapiens peroxidasin homolog (Drosophila) (PXDN), mRNA.	782					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			breast(1)|cervix(3)|endometrium(10)|haematopoietic_and_lymphoid_tissue(3)|kidney(6)|large_intestine(24)|lung(48)|ovary(3)|pancreas(8)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(3)	112	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		GTCGGTGGGGGTTGATGCCCC	0.652												
GALNT14	79623	broad.mit.edu	37	2	31168648	31168649	+	Splice_Site	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:31168647_31168648A>AC	uc002rns.3	-	8	1397	c.757_splice	c.e8+1	p.G253_splice	GALNT14_uc002rnq.3_Splice_Site_p.G228_splice|GALNT14_uc010ymr.2_Splice_Site_p.G213_splice|GALNT14_uc002rnr.3_Splice_Site_p.G248_splice|GALNT14_uc010ezo.2_Splice_Site_p.G215_splice|GALNT14_uc010ezp.1_Intron	NM_001253826	NP_001240755	Q96FL9	GLT14_HUMAN	Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) (GALNT14), transcript variant 2, mRNA.	248						Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			cervix(1)|endometrium(3)|large_intestine(10)|liver(1)|lung(21)|ovary(1)|skin(3)|upper_aerodigestive_tract(3)	43	Acute lymphoblastic leukemia(172;0.155)					AGCCCAACTCACCCCCTCTGAG	0.510												
RANBP2	5903	broad.mit.edu	37	2	109381419	109381420	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr2:109381418_109381419G>GT	uc002tem.4	+	19	4549_4550	c.4423_4424G>GT	c.(4423-4425)gttfs	p.V1475fs		NM_006267	NP_006258	P49792	RBP2_HUMAN	Homo sapiens RAN binding protein 2 (RANBP2), mRNA.	1475					carbohydrate metabolic process|glucose transport|mRNA transport|mitotic prometaphase|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	Ran GTPase binding|peptidyl-prolyl cis-trans isomerase activity|zinc ion binding		RANBP2/ALK(34)	NS(1)|biliary_tract(1)|breast(3)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(21)|large_intestine(19)|lung(51)|pancreas(1)|prostate(8)|skin(7)|upper_aerodigestive_tract(2)|urinary_tract(1)	129						TTTCAGATCTGTTTTTTCTACA	0.386												
MTMR14	64419	broad.mit.edu	37	3	9739422	9739423	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:9739421_9739422CCT>C	uc003brz.3	+	17	1791_1792	c.1640_1641CCT>C	c.(1639-1641)tccfs	p.S547fs	MTMR14_uc003bsa.3_Intron|MTMR14_uc003bsb.3_Intron|MTMR14_uc011ath.2_Non-coding_Transcript|MTMR14_uc010hcl.3_Intron|MTMR14_uc003bsc.3_Non-coding_Transcript|MTMR14_uc021wss.1_Intron	NM_001077525	NP_001070993	Q8NCE2	MTMRE_HUMAN	Homo sapiens myotubularin related protein 14 (MTMR14), transcript variant 2, mRNA.	547						perinuclear region of cytoplasm|ruffle	phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			breast(1)|endometrium(3)|kidney(2)|lung(10)|skin(3)|upper_aerodigestive_tract(2)	21	Medulloblastoma(99;0.227)					CTGCCCGGATCCTCTCTCTCCA	0.594												
NUP210	23225	broad.mit.edu	37	3	13438890	13438890	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:13438889_13438889AG>A	uc003bxv.1	-	2	487	c.404_404CT>T	c.(403-405)ctgfs	p.L135fs		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	Homo sapiens nucleoporin 210kDa (NUP210), mRNA.	135					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore		p.P134L(1)		NS(1)|biliary_tract(1)|breast(1)|central_nervous_system(2)|cervix(1)|endometrium(9)|kidney(2)|large_intestine(10)|liver(1)|lung(16)|ovary(7)|pancreas(1)|prostate(1)|skin(8)|upper_aerodigestive_tract(3)|urinary_tract(2)	66	all_neural(104;0.187)					CTTCAGCTCCAGGGGGGAGTC	0.607												
ATG3	64422	broad.mit.edu	37	3	112277267	112277267	+	Splice_Site	DEL	A	A	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:112277266_112277266TA>T	uc003dzd.3	-	2	183	c.73_splice	c.e2-1	p.E25_splice	ATG3_uc003dzc.3_Splice_Site_p.E25_splice|ATG3_uc010hqe.3_Splice_Site_p.E25_splice	NM_022488	NP_071933	Q9NT62	ATG3_HUMAN	Homo sapiens ATG3 autophagy related 3 homolog (S. cerevisiae) (ATG3), mRNA.	25					autophagic vacuole assembly|mitochondrial fragmentation involved in apoptosis|protein targeting to membrane|protein ubiquitination	cytoplasmic ubiquitin ligase complex|cytosol	Atg12 ligase activity|Atg8 ligase activity|enzyme binding			breast(1)|kidney(1)|large_intestine(1)|lung(3)|ovary(3)	9						CTTTGATTCCTAAAAAAAGCA	0.323												
PDIA5	10954	broad.mit.edu	37	3	122869089	122869090	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:122869088_122869089G>GC	uc003egc.2	+	13	1306_1307	c.1150_1151G>GC	c.(1150-1152)gccfs	p.A384fs	PDIA5_uc003egd.2_Non-coding_Transcript	NM_006810	NP_006801	Q14554	PDIA5_HUMAN	Homo sapiens protein disulfide isomerase family A, member 5 (PDIA5), transcript variant 1, mRNA.	384	Thioredoxin 2.|Thioredoxin 3.				cell redox homeostasis|glycerol ether metabolic process|protein folding|response to stress	endoplasmic reticulum lumen	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			breast(1)|endometrium(1)|large_intestine(4)|lung(8)|ovary(1)|prostate(1)|skin(2)|stomach(1)|urinary_tract(2)	21				GBM - Glioblastoma multiforme(114;0.0427)		CAGCCCTGAGGCCCCCCCGCCC	0.604												
PHC3	80012	broad.mit.edu	37	3	169820467	169820469	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr3:169820466_169820468GTCT>G	uc003fgl.2	-	13	2666_2668	c.2632_2634AGAC>C	c.(2632-2634)gac>C	p.D878del	PHC3_uc010hws.1_In_Frame_Del_p.D866del|PHC3_uc011bpq.1_In_Frame_Del_p.816_817KT>N	NM_024947	NP_079223	Q8NDX5	PHC3_HUMAN	Homo sapiens polyhomeotic homolog 3 (Drosophila) (PHC3), mRNA.	866					multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(12)|ovary(1)|upper_aerodigestive_tract(2)	26	all_cancers(22;2.67e-22)|all_epithelial(15;4.73e-27)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0655)			GAGAAGCCAAGTCTTCTTCTGCA	0.438												
PKD2	5311	broad.mit.edu	37	4	88986559	88986560	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:88986558_88986559G>GA	uc003hre.3	+	10	2238_2239	c.2151_2152G>GA	c.(2149-2154)ctgaaafs	p.L717fs	PKD2_uc011cdf.2_Frame_Shift_Ins_p.L135fs|PKD2_uc011cdg.2_Frame_Shift_Ins_p.L43fs|PKD2_uc011cdh.2_5'UTR	NM_000297	NP_000288	Q13563	PKD2_HUMAN	Homo sapiens polycystic kidney disease 2 (autosomal dominant) (PKD2), mRNA.	717	EF-hand domain.					basal cortex|basal plasma membrane|endoplasmic reticulum|integral to membrane|lamellipodium|microtubule basal body	calcium ion binding|cytoskeletal protein binding|voltage-gated chloride channel activity|voltage-gated sodium channel activity			breast(1)|endometrium(4)|kidney(1)|large_intestine(8)|liver(2)|lung(15)|skin(4)|upper_aerodigestive_tract(1)	36		Hepatocellular(203;0.114)|Acute lymphoblastic leukemia(40;0.221)		OV - Ovarian serous cystadenocarcinoma(123;9.98e-10)|COAD - Colon adenocarcinoma(81;0.0237)		AACTAAAACTGAAAAAAAATAC	0.386												
KIAA1109	84162	broad.mit.edu	37	4	123140538	123140547	+	Frame_Shift_Del	DEL	AGGTTATCTC	AGGTTATCTC	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr4:123140537_123140546GAGGTTATCTC>G	uc003ieh.3	+	18	2335_2344	c.2290_2299GAGGTTATCTC>G	c.(2290-2301)gaggttatctcafs	p.E764fs	KIAA1109_uc003iei.1_Frame_Shift_Del_p.E518fs|KIAA1109_uc010ins.1_Frame_Shift_Del_p.E108fs|KIAA1109_uc003iej.1_Frame_Shift_Del_p.E149fs	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	Homo sapiens KIAA1109 (KIAA1109), mRNA.	764					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				breast(7)|central_nervous_system(1)|cervix(1)|endometrium(16)|kidney(6)|large_intestine(33)|liver(4)|lung(74)|ovary(9)|pancreas(1)|prostate(5)|skin(6)|upper_aerodigestive_tract(6)|urinary_tract(3)	172						GGATTTTGAAGAGGTTATCTCAAGTCCTGT	0.352												
GCNT4	51301	broad.mit.edu	37	5	74324983	74324984	+	Frame_Shift_Ins	INS	-	-	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:74324982_74324983T>TG	uc003kdn.3	-	0	1742_1743	c.880_881A>CA	c.(880-882)catfs	p.H294fs		NM_016591	NP_057675	Q9P109	GCNT4_HUMAN	Homo sapiens glucosaminyl (N-acetyl) transferase 4, core 2 (GCNT4), mRNA.	294					protein O-linked glycosylation	Golgi membrane|integral to membrane	N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity	p.H294fs*2(2)		NS(1)|breast(1)|endometrium(1)|kidney(1)|large_intestine(7)|lung(3)|ovary(2)|skin(1)|stomach(2)	19		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;8.44e-57)		CTGAATGTTATGGGGGGGTGCT	0.366												
ARAP3	64411	broad.mit.edu	37	5	141060073	141060073	+	Splice_Site	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr5:141060072_141060072TG>T	uc003llm.3	-	2	62	c.-16_splice	c.e2-1		ARAP3_uc003lln.3_Intron|ARAP3_uc003llo.1_5'UTR	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	Homo sapiens ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 (ARAP3), mRNA.						cytoskeleton organization|negative regulation of Rho protein signal transduction|negative regulation of cell migration|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|Rho GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			NS(1)|breast(7)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(13)|lung(14)|ovary(1)|prostate(2)|skin(4)|stomach(1)	53						AGGCCATTGCTGGGGGGAGGG	0.652												
ELOVL2	54898	broad.mit.edu	37	6	10995330	10995330	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:10995329_10995329GT>G	uc003mzp.4	-	4	577	c.416_416AC>C	c.(415-417)acgfs	p.T139fs		NM_017770	NP_060240	Q9NXB9	ELOV2_HUMAN	Homo sapiens ELOVL fatty acid elongase 2 (ELOVL2), mRNA.	139					fatty acid elongation, polyunsaturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(3)|lung(5)|stomach(1)|upper_aerodigestive_tract(2)	14	Breast(50;0.0418)|Ovarian(93;0.0919)	all_hematologic(90;0.117)	Epithelial(50;0.176)			AATCTGACTCGTTTTTTTCCG	0.363												
RING1	6015	broad.mit.edu	37	6	33178990	33178990	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:33178989_33178989TG>T	uc003odk.3	+	4	704	c.510_510TG>T	c.(508-510)agtfs	p.S170fs	RING1_uc011dqx.1_Frame_Shift_Del_p.S170fs|RING1_uc003odl.3_Frame_Shift_Del_p.S141fs	NM_002931	NP_002922	Q06587	RING1_HUMAN	Homo sapiens ring finger protein 1 (RING1), mRNA.	170	Necessary for transcriptional repression (By similarity).				histone H2A monoubiquitination|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	PcG protein complex|cytoplasm|nuclear speck	protein binding|zinc ion binding			endometrium(5)|large_intestine(1)|lung(3)|ovary(2)|prostate(2)|skin(4)	17						CAACGATGAGTGGGGGGGAAG	0.617												
ZBTB24	9841	broad.mit.edu	37	6	109787370	109787371	+	In_Frame_Ins	INS	-	-	GTAAGATTA			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:109787369_109787370G>GGTAAGATTA	uc003ptl.1	-	6	1946_1947	c.1778_1779C>TAATCTTACC	c.(1777-1779)acc>aTAATCTTACC	p.593_593T>IIL	MICAL1_uc011eaq.2_5'Flank|ZBTB24_uc011ear.1_Non-coding_Transcript|ZBTB24_uc010kds.1_In_Frame_Ins_p.537_537T>IIL|ZBTB24_uc010kdt.1_Non-coding_Transcript	NM_014797	NP_055612	O43167	ZBT24_HUMAN	Homo sapiens zinc finger and BTB domain containing 24 (ZBTB24), transcript variant 1, mRNA.	593					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(1)|large_intestine(6)|lung(9)|ovary(1)|pancreas(1)|skin(1)|stomach(1)	22		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0154)|all cancers(137;0.0216)|OV - Ovarian serous cystadenocarcinoma(136;0.0242)|BRCA - Breast invasive adenocarcinoma(108;0.059)		GCGTGAGCAGGGTAAGATTAGC	0.465												
SHPRH	257218	broad.mit.edu	37	6	146256570	146256571	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:146256569_146256570C>CA	uc003qlf.3	-	11	2976_2977	c.2577_2578G>TG	c.(2575-2580)tttgggfs	p.F859fs	SHPRH_uc003qle.3_Frame_Shift_Ins_p.F859fs|SHPRH_uc003qlg.1_Frame_Shift_Ins_p.F415fs|SHPRH_uc003qlj.1_Frame_Shift_Ins_p.F748fs|SHPRH_uc003qlh.3_5'Flank	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	Homo sapiens SNF2 histone linker PHD RING helicase (SHPRH), transcript variant 1, mRNA.	859	Helicase ATP-binding; second part.				DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding	p.L858I(1)		breast(2)|central_nervous_system(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(15)|lung(33)|ovary(3)|pancreas(2)|prostate(7)|skin(1)|urinary_tract(1)	79		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		ACCACTAACCCAAAAAGATCTG	0.371												
SYTL3	94120	broad.mit.edu	37	6	159183138	159183141	+	Frame_Shift_Del	DEL	TTTG	TTTG	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr6:159183137_159183140CTTTG>C	uc003qrp.3	+	16	1843_1846	c.1444_1447CTTTG>C	c.(1444-1449)ctttgtfs	p.L482fs	SYTL3_uc003qrr.3_Frame_Shift_Del_p.L482fs|SYTL3_uc003qro.3_Frame_Shift_Del_p.L414fs|SYTL3_uc003qrs.3_Frame_Shift_Del_p.L414fs|SYTL3_uc011efq.2_Frame_Shift_Del_p.L208fs	NM_001242384	NP_001229313	Q4VX76	SYTL3_HUMAN	Homo sapiens synaptotagmin-like 3 (SYTL3), transcript variant 1, mRNA.	482	C2 2.				intracellular protein transport	endomembrane system|membrane	Rab GTPase binding			endometrium(2)|kidney(3)|large_intestine(5)|lung(7)|ovary(1)|pancreas(1)|urinary_tract(1)	20		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.54e-17)|BRCA - Breast invasive adenocarcinoma(81;8.24e-06)		TCATGGTCAACTTTGTTTGGTAGT	0.441												
ANKS6	203286	broad.mit.edu	37	9	101544793	101544793	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr9:101544792_101544792AT>A	uc004ayu.3	-	4	1197	c.1176_1176AT>T	c.(1174-1176)aatfs	p.N392fs	ANKS6_uc004ayx.2_Non-coding_Transcript|ANKS6_uc004ayy.2_Non-coding_Transcript|ANKS6_uc004ayt.3_Frame_Shift_Del_p.N91fs	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	Homo sapiens ankyrin repeat and sterile alpha motif domain containing 6 (ANKS6), mRNA.	392										endometrium(3)|large_intestine(6)|lung(6)|ovary(2)|pancreas(1)|prostate(2)|skin(1)	21		Acute lymphoblastic leukemia(62;0.0527)				CCGTGTATCCATTTTTTGCAC	0.433												
FRMD4A	55691	broad.mit.edu	37	10	13696452	13696453	+	Frame_Shift_Ins	INS	-	-	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:13696451_13696452T>TG	uc001ims.3	-	22	3366_3367	c.3014_3015A>CA	c.(3013-3015)ccafs	p.P1005fs	PRPF18_uc001imq.3_Intron|FRMD4A_uc009xjf.1_Frame_Shift_Ins_p.P1005fs	NM_018027	NP_060497	Q9P2Q2	FRM4A_HUMAN	Homo sapiens FERM domain containing 4A (FRMD4A), mRNA.	1005	Ser-rich.					cytoplasm|cytoskeleton	binding			breast(4)|endometrium(9)|kidney(2)|large_intestine(11)|lung(9)|ovary(2)|pancreas(1)|prostate(2)|skin(1)	41						GGGGGCTGCTTGGGGGGGTGGC	0.535												
JMJD1C	221037	broad.mit.edu	37	10	64966903	64966904	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr10:64966902_64966903A>AT	uc001jmn.3	-	9	4826_4827	c.4526_4527T>AT	c.(4525-4527)aatfs	p.N1509fs	JMJD1C_uc001jml.3_Frame_Shift_Ins_p.N1290fs|JMJD1C_uc001jmm.3_Frame_Shift_Ins_p.N1221fs|JMJD1C_uc010qiq.2_Frame_Shift_Ins_p.N1327fs|JMJD1C_uc009xpi.3_Frame_Shift_Ins_p.N1327fs|JMJD1C_uc009xpj.2_Non-coding_Transcript|JMJD1C_uc009xpk.1_Frame_Shift_Ins_p.N546fs	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	Homo sapiens jumonji domain containing 1C (JMJD1C), transcript variant 1, mRNA.	1509					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			breast(2)|central_nervous_system(2)|cervix(1)|endometrium(8)|kidney(8)|large_intestine(9)|lung(27)|ovary(6)|prostate(4)|skin(4)|stomach(3)|upper_aerodigestive_tract(3)	77	Prostate(12;0.0119)|all_hematologic(501;0.191)					AAAGTGTCTGATTTTTTATAGC	0.401												
ILK	3611	broad.mit.edu	37	11	6629293	6629294	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:6629292_6629293T>TC	uc001mee.3	+	2	241_242	c.106_107T>TC	c.(106-108)tccfs	p.S36fs	ILK_uc001mef.3_Frame_Shift_Ins_p.S36fs|ILK_uc010rap.2_Intron|ILK_uc010raq.2_Frame_Shift_Ins_p.S36fs|ILK_uc001meh.3_Frame_Shift_Ins_p.S36fs	NM_001014794	NP_004508	Q13418	ILK_HUMAN	Homo sapiens integrin-linked kinase (ILK), transcript variant 2, mRNA.	36	Interaction with LIMS1.				cell junction assembly|cell proliferation|cell-matrix adhesion|integrin-mediated signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent	cytosol|focal adhesion	ATP binding|protein serine/threonine kinase activity			central_nervous_system(1)	1		Breast(177;7.61e-05)|Medulloblastoma(188;0.00263)|all_neural(188;0.026)|all_lung(207;0.152)		Epithelial(150;5.49e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00012)|Lung(200;0.00942)|LUSC - Lung squamous cell carcinoma(625;0.0163)		TCATGGCTTCTCCCCCTTGCAC	0.535												
MDK	4192	broad.mit.edu	37	11	46403892	46403893	+	Frame_Shift_Ins	INS	-	-	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:46403891_46403892T>TG	uc001nco.3	+	2	346_347	c.124_125T>TG	c.(124-126)tggfs	p.W42fs	MDK_uc009ykz.1_Frame_Shift_Ins_p.W42fs|MDK_uc001ncp.3_Frame_Shift_Ins_p.W42fs|MDK_uc009yla.3_Intron|MDK_uc009ylb.3_Frame_Shift_Ins_p.W42fs|MDK_uc001ncq.3_Frame_Shift_Ins_p.W42fs	NM_001012334	NP_002382	P21741	MK_HUMAN	Homo sapiens midkine (neurite growth-promoting factor 2) (MDK), transcript variant 1, mRNA.	42					adrenal gland development|cell differentiation|nervous system development|positive regulation of cell division|response to wounding|signal transduction	extracellular region	growth factor activity|heparin binding			lung(1)	1				GBM - Glioblastoma multiforme(35;0.0252)|Lung(87;0.14)		TGAGTGGGCCTGGGGGCCCTGC	0.693												
IGHMBP2	3508	broad.mit.edu	37	11	68696803	68696803	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:68696802_68696802GC>G	uc001ook.1	+	7	1314	c.1212_1212GC>G	c.(1210-1212)ctgfs	p.L404fs	IGHMBP2_uc001ooj.1_Non-coding_Transcript|IGHMBP2_uc001ool.1_5'Flank|IGHMBP2_uc001oom.1_5'Flank	NM_002180	NP_002171	P38935	SMBP2_HUMAN	Homo sapiens immunoglobulin mu binding protein 2 (IGHMBP2), mRNA.	404	Leu-rich.				DNA recombination|DNA repair|DNA replication|cell death|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|tRNA binding|transcription factor binding|zinc ion binding			central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(4)|liver(1)|lung(15)|ovary(2)|prostate(2)|soft_tissue(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	36			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			ACAAGCAGCTGCCCCCCACCA	0.642												
TAF1D	79101	broad.mit.edu	37	11	93471453	93471453	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr11:93471452_93471452CT>C	uc001ped.3	-	2	525	c.282_282AG>G	c.(280-282)aagfs	p.K94fs	TAF1D_uc001pec.3_5'Flank|TAF1D_uc001pdz.3_Non-coding_Transcript	NM_024116	NP_077021	Q9H5J8	TAF1D_HUMAN	Homo sapiens TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa (TAF1D), mRNA.	94					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			large_intestine(1)|lung(3)|prostate(1)|skin(2)	7						TCCTCTTTTTCTTTTTTTTAT	0.343												
NCAPD2	9918	broad.mit.edu	37	12	6631162	6631163	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:6631161_6631162A>AT	uc001qoo.2	+	14	1958_1959	c.1912_1913A>AT	c.(1912-1914)attfs	p.I638fs	NCAPD2_uc009zen.1_Frame_Shift_Ins_p.I510fs|NCAPD2_uc010sfd.1_Frame_Shift_Ins_p.I593fs	NM_014865	NP_055680	Q15021	CND1_HUMAN	Homo sapiens non-SMC condensin I complex, subunit D2 (NCAPD2), mRNA.	638					cell division|mitotic chromosome condensation	condensin core heterodimer|cytoplasm	histone binding			NS(1)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(5)|large_intestine(7)|lung(15)|ovary(2)|skin(1)|upper_aerodigestive_tract(4)|urinary_tract(3)	48						TACAGAGGCCATTGGCATCATC	0.446												
ALG10	84920	broad.mit.edu	37	12	34179404	34179405	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr12:34179403_34179404G>GT	uc001rlm.3	+	2	1294_1295	c.975_976G>GT	c.(973-978)ctgtttfs	p.L325fs		NM_032834	NP_116223	Q5BKT4	AG10A_HUMAN	Homo sapiens asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe) (ALG10), mRNA.	325					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			NS(1)|breast(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(3)|lung(13)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)	26	Lung NSC(5;3.82e-05)|Acute lymphoblastic leukemia(23;0.0142)|all_hematologic(23;0.0429)	Lung NSC(34;0.204)|all_lung(34;0.235)				GTAGAATTCTGTTTTTTGTGGT	0.322												
WASF3	10810	broad.mit.edu	37	13	27255387	27255388	+	Frame_Shift_Ins	INS	-	-	C	rs141429361		TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr13:27255386_27255387G>GC	uc001uqv.3	+	7	1137_1138	c.912_913G>GC	c.(910-915)ccgcccfs	p.P304fs	WASF3_uc001uqw.3_Frame_Shift_Ins_p.P301fs	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	Homo sapiens WAS protein family, member 3 (WASF3), mRNA.	304	Poly-Pro.				actin filament polymerization	cytoplasm|cytoskeleton	actin binding			breast(2)|endometrium(3)|kidney(2)|large_intestine(4)|lung(6)|pancreas(1)|prostate(2)|skin(2)	22	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		CTCAGCAGCCGCCCCCCCCGCC	0.678												
PELI2	57161	broad.mit.edu	37	14	56757067	56757067	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr14:56757066_56757066AG>A	uc001xch.3	+	4	874	c.588_588AG>A	c.(586-588)cgafs	p.R196fs		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	Homo sapiens pellino homolog 2 (Drosophila) (PELI2), mRNA.	196					MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|innate immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			kidney(6)|large_intestine(3)|lung(11)|ovary(1)|skin(1)	22						TGCATCCACGAGGGGGCTTCA	0.587												
SYNM	23336	broad.mit.edu	37	15	99670283	99670284	+	Frame_Shift_Ins	INS	-	-	GA			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr15:99670282_99670283C>CGA	uc002bup.3	+	4	1834_1835	c.1714_1715C>CGA	c.(1714-1716)cgafs	p.R572fs	SYNM_uc002buo.3_Frame_Shift_Ins_p.R572fs|SYNM_uc002buq.3_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	Homo sapiens synemin, intermediate filament protein (SYNM), transcript variant A, mRNA.	573	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			NS(1)|breast(1)|central_nervous_system(2)|endometrium(3)|kidney(1)|large_intestine(8)|lung(6)|ovary(3)|prostate(1)|skin(2)|urinary_tract(1)	29						GAAGAGCGTGCGAGAGAGAGAG	0.520												
CLDN9	9080	broad.mit.edu	37	16	3063918	3063919	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr16:3063917_3063918G>GC	uc010uwo.1	+	0	1461_1462	c.554_555G>GC	c.(553-555)tgcfs	p.C185fs		NM_020982	NP_066192	O95484	CLD9_HUMAN	Homo sapiens claudin 9 (CLDN9), mRNA.	185					calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity	p.T184M(1)		endometrium(2)|large_intestine(1)|lung(5)|prostate(2)	10						TGCTGCACGTGCCCCCCGCCCC	0.718												
SERPINF2	5345	broad.mit.edu	37	17	1657784	1657785	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:1657783_1657784G>GC	uc002ftk.1	+	9	1508_1509	c.1431_1432G>GC	c.(1429-1434)gtgcccfs	p.V477fs	SERPINF2_uc010vqr.1_Frame_Shift_Ins_p.V413fs|SERPINF2_uc021tnm.1_Frame_Shift_Ins_p.V477fs	NM_000934	NP_001159392	P08697	A2AP_HUMAN	Homo sapiens serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 (SERPINF2), transcript variant 1, mRNA.	477					acute-phase response|fibrinolysis|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			breast(2)|endometrium(1)|kidney(2)|lung(4)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	12				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)	Streptokinase(DB00086)	TAAAACTTGTGCCCCCCATGGA	0.599												
CHD3	1107	broad.mit.edu	37	17	7798765	7798765	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:7798764_7798764AC>A	uc002gjd.2	+	9	1790	c.1788_1788AC>A	c.(1786-1788)ccafs	p.P596fs	CHD3_uc002gje.2_Frame_Shift_Del_p.P537fs|CHD3_uc002gjf.2_Frame_Shift_Del_p.P537fs|CHD3_uc002gjg.1_Frame_Shift_Del_p.P365fs	NM_001005271	NP_001005271	Q12873	CHD3_HUMAN	Homo sapiens chromodomain helicase DNA binding protein 3 (CHD3), transcript variant 3, mRNA.	537					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	NuRD complex|microtubule organizing center	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(2)|central_nervous_system(1)|cervix(2)|endometrium(11)|kidney(6)|large_intestine(13)|liver(2)|lung(14)|ovary(1)|pancreas(1)|prostate(7)|skin(3)|urinary_tract(2)	65		Prostate(122;0.202)				CAGATGTCCCACCCCCCCGTC	0.577												
LIG3	3980	broad.mit.edu	37	17	33310486	33310487	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:33310485_33310486C>CA	uc002hik.2	+	1	590_591	c.461_462C>CA	c.(460-462)acafs	p.T154fs	LIG3_uc002hii.3_Frame_Shift_Ins_p.T154fs|LIG3_uc002hij.3_Frame_Shift_Ins_p.T154fs|LIG3_uc010cth.1_Frame_Shift_Ins_p.T163fs	NM_013975	NP_039269	P49916	DNLI3_HUMAN	Homo sapiens ligase III, DNA, ATP-dependent (LIG3), nuclear gene encoding mitochondrial protein, transcript variant alpha, mRNA.	154					DNA ligation involved in DNA repair|DNA replication|base-excision repair|cell division|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			endometrium(4)|large_intestine(8)|lung(9)|ovary(3)|pancreas(2)|prostate(1)|skin(3)|stomach(1)	31		Ovarian(249;0.17)			Bleomycin(DB00290)	CGGGCCACCACAAAAAAAATCG	0.485								Other BER factors				
KAT2A	2648	broad.mit.edu	37	17	40267056	40267056	+	Splice_Site	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:40267055_40267055TG>T	uc002hyx.2	-	13	1936	c.1876_splice	c.e13-1	p.G626_splice	DHX58_uc002hyv.3_5'Flank|DHX58_uc002hyw.3_5'Flank|DHX58_uc010wgf.1_5'Flank	NM_021078	NP_066564	Q92830	KAT2A_HUMAN	Homo sapiens K(lysine) acetyltransferase 2A (KAT2A), mRNA.	626	N-acetyltransferase.				chromatin remodeling|histone deubiquitination|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	H3 histone acetyltransferase activity|histone deacetylase binding|protein binding|transcription coactivator activity			central_nervous_system(1)|endometrium(3)|large_intestine(1)|lung(4)|ovary(1)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	18						GGAGAAACCCTGGGGGGTGGA	0.577												
AOC3	8639	broad.mit.edu	37	17	41003846	41003847	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr17:41003845_41003846G>GC	uc002ibv.3	+	0	645_646	c.485_486G>GC	c.(484-486)ggcfs	p.G162fs		NM_003734	NP_003725	Q16853	AOC3_HUMAN	Homo sapiens amine oxidase, copper containing 3 (vascular adhesion protein 1) (AOC3), mRNA.	162					amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			breast(1)|central_nervous_system(4)|endometrium(4)|kidney(1)|large_intestine(8)|lung(14)|ovary(1)|skin(8)	41		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	CGTCATGGAGGCCCCCTGCCCT	0.614												
SAFB	6294	broad.mit.edu	37	19	5667168	5667169	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:5667167_5667168T>TC	uc002mcg.3	+	17	2616_2617	c.2445_2446T>TC	c.(2443-2448)cctcccfs	p.P815fs	SAFB_uc002mcf.3_Frame_Shift_Ins_p.P815fs|SAFB_uc002mce.4_Frame_Shift_Ins_p.P814fs|SAFB_uc010xis.2_Frame_Shift_Ins_p.P746fs|SAFB_uc010xit.2_Frame_Shift_Ins_p.P657fs|SAFB_uc010xir.2_Frame_Shift_Ins_p.P814fs|SAFB_uc010xiu.2_Frame_Shift_Ins_p.P614fs	NM_001201338	NP_001188267	Q15424	SAFB1_HUMAN	Homo sapiens scaffold attachment factor B (SAFB), transcript variant 1, mRNA.	815	Arg-rich.|Gly-rich.|Interaction with SAFB2.				chromatin organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	RNA binding|double-stranded DNA binding|nucleotide binding|protein binding			breast(3)|central_nervous_system(1)|endometrium(5)|large_intestine(4)|liver(1)|lung(6)|ovary(2)|skin(1)	23				UCEC - Uterine corpus endometrioid carcinoma (162;0.000222)		GGCTGCCTCCTCCCCCCAGGTT	0.693												
SNAPC2	6618	broad.mit.edu	37	19	7987519	7987519	+	Frame_Shift_Del	DEL	C	C	-	rs143745112	byFrequency	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:7987518_7987518AC>A	uc002miw.2	+	4	932	c.874_874AC>A	c.(874-876)accfs	p.T292fs	SNAPC2_uc002mix.2_Non-coding_Transcript	NM_003083	NP_003074	Q13487	SNPC2_HUMAN	Homo sapiens small nuclear RNA activating complex, polypeptide 2, 45kDa (SNAPC2), transcript variant 1, mRNA.	292					snRNA transcription|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	sequence-specific DNA binding transcription factor activity			NS(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(1)|urinary_tract(1)	6						ACCAGAGGAGACCCCCCCAGC	0.667												
ZNF443	10224	broad.mit.edu	37	19	12542364	12542365	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:12542363_12542364C>CA	uc002mtu.3	-	3	820_821	c.622_623G>TG	c.(622-624)tggfs	p.W208fs		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	Homo sapiens zinc finger protein 443 (ZNF443), mRNA.	208					induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|endometrium(1)|kidney(1)|large_intestine(11)|lung(10)|pancreas(1)|prostate(1)	28						TAAACTGGGCCAAAAAAACGCT	0.406												
CYP4F3	4051	broad.mit.edu	37	19	15760824	15760825	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:15760823_15760824A>AC	uc010xok.2	+	6	798_799	c.748_749A>AC	c.(748-750)accfs	p.T250fs	CYP4F3_uc010xol.2_Frame_Shift_Ins_p.T250fs|CYP4F3_uc002nbj.3_Frame_Shift_Ins_p.T250fs|CYP4F3_uc010xom.2_Frame_Shift_Ins_p.T101fs|CYP4F3_uc002nbk.3_Frame_Shift_Ins_p.T250fs|CYP4F3_uc010xon.2_5'UTR	NM_001199208	NP_001186137	Q08477	CP4F3_HUMAN	Homo sapiens cytochrome P450, family 4, subfamily F, polypeptide 3 (CYP4F3), transcript variant 2, mRNA.	250					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			endometrium(3)|large_intestine(4)|lung(21)|ovary(3)|prostate(2)|stomach(1)	34						GTATTATCTCACCCCTGATGGG	0.574												
PAK4	10298	broad.mit.edu	37	19	39668366	39668367	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:39668365_39668366G>GC	uc002okj.1	+	9	1997_1998	c.1536_1537G>GC	c.(1534-1539)gagcccfs	p.E512fs	PAK4_uc002okl.1_Frame_Shift_Ins_p.E512fs|PAK4_uc002okn.1_Frame_Shift_Ins_p.E512fs|PAK4_uc002okm.1_Frame_Shift_Ins_p.E359fs|PAK4_uc002oko.1_Frame_Shift_Ins_p.E359fs|PAK4_uc002okp.1_Frame_Shift_Ins_p.E422fs	NM_001014831	NP_005875	O96013	PAK4_HUMAN	Homo sapiens p21 protein (Cdc42/Rac)-activated kinase 4 (PAK4), transcript variant 2, mRNA.	512	Protein kinase.				cellular component movement|signal transduction	Golgi apparatus	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(1)|kidney(2)|large_intestine(1)|lung(7)|ovary(1)|prostate(1)	13	all_cancers(60;1.03e-07)|all_epithelial(25;9.66e-08)|all_lung(34;1.58e-07)|Lung NSC(34;1.88e-07)|Ovarian(47;0.0454)		Epithelial(26;4.82e-25)|all cancers(26;2.94e-22)|Lung(45;0.000797)|LUSC - Lung squamous cell carcinoma(53;0.00113)			TGGACGGAGAGCCCCCCTACTT	0.604												
AXL	558	broad.mit.edu	37	19	41765647	41765648	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:41765646_41765647A>AC	uc010ehj.3	+	19	2712_2713	c.2522_2523A>AC	c.(2521-2523)gacfs	p.D841fs	HNRNPUL1_uc002opz.4_5'Flank|HNRNPUL1_uc002oqa.4_5'Flank|AXL_uc010ehk.3_Frame_Shift_Ins_p.D832fs|HNRNPUL1_uc010ehl.1_5'Flank	NM_021913	NP_068713	P30530	UFO_HUMAN	Homo sapiens AXL receptor tyrosine kinase (AXL), transcript variant 1, mRNA.	841						integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			breast(3)|central_nervous_system(1)|endometrium(6)|kidney(2)|large_intestine(9)|lung(12)|ovary(3)|pancreas(1)|prostate(4)|skin(3)|stomach(3)|upper_aerodigestive_tract(1)	48						GGAGGAGCTGACCCCCCAACCC	0.594												
FPR1	2357	broad.mit.edu	37	19	52250074	52250075	+	Frame_Shift_Ins	INS	-	-	TG			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:52250073_52250074C>CTG	uc021uyn.1	-	2	320_321	c.174_175G>CAG	c.(172-177)acagtcfs	p.T58fs	FPR1_uc002pxq.3_Frame_Shift_Ins_p.T58fs|FPR1_uc021uyo.1_Frame_Shift_Ins_p.T58fs	NM_001193306	NP_002020	P21462	FPR1_HUMAN	Homo sapiens formyl peptide receptor 1 (FPR1), transcript variant 1, mRNA.	58					G-protein signaling, coupled to cAMP nucleotide second messenger|activation of MAPK activity|cellular component movement|chemotaxis|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			endometrium(2)|kidney(2)|large_intestine(2)|lung(6)|ovary(1)|pancreas(1)|prostate(1)|skin(2)|stomach(3)	20		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	ATGGTGGTGACTGTGTGTGTCA	0.535												
NLRP7	199713	broad.mit.edu	37	19	55451098	55451098	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:55451097_55451097CG>C	uc002qih.4	-	3	1166	c.1090_1090CG>G	c.(1090-1092)gcgfs	p.A364fs	NLRP7_uc010esk.3_Frame_Shift_Del_p.A364fs|NLRP7_uc002qig.4_Frame_Shift_Del_p.A364fs|NLRP7_uc002qii.4_Frame_Shift_Del_p.A364fs|NLRP7_uc010esl.3_Frame_Shift_Del_p.A392fs	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	Homo sapiens NLR family, pyrin domain containing 7 (NLRP7), transcript variant 2, mRNA.	364	NACHT.						ATP binding			autonomic_ganglia(1)|breast(2)|central_nervous_system(2)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(17)|liver(1)|lung(33)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(3)	73				GBM - Glioblastoma multiforme(193;0.0325)		CAGCACACCGCGGGGGCCGAG	0.627												
MZF1	7593	broad.mit.edu	37	19	59081816	59081817	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr19:59081815_59081816TCA>T	uc002qto.3	-	2	1036_1037	c.475_476TGA>A	c.(475-477)gagfs	p.E159fs	LOC100131691_uc002qtm.3_Non-coding_Transcript|MZF1_uc002qtn.3_Frame_Shift_Del_p.E159fs|MZF1_uc010euu.1_Frame_Shift_Del_p.E200fs	NM_198055	NP_932172	P28698	MZF1_HUMAN	Homo sapiens myeloid zinc finger 1 (MZF1), transcript variant 2, mRNA.	159					viral reproduction	nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(2)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	11		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0443)|all cancers(4;7.92e-14)|Epithelial(4;5.57e-11)|OV - Ovarian serous cystadenocarcinoma(4;1.13e-09)|GBM - Glioblastoma multiforme(193;0.0108)|Lung(386;0.182)		AGTTGGAGGCTCAGTTTCAGGT	0.594												
CHGB	1114	broad.mit.edu	37	20	5903414	5903415	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:5903413_5903414T>TA	uc002wmg.3	+	3	929_930	c.623_624T>TA	c.(622-624)atafs	p.I208fs	CHGB_uc010zqz.2_5'UTR	NM_001819	NP_001810	P05060	SCG1_HUMAN	Homo sapiens chromogranin B (secretogranin 1) (CHGB), mRNA.	208						extracellular region	hormone activity			breast(7)|kidney(2)|large_intestine(8)|lung(19)|ovary(1)|pancreas(2)|skin(5)|stomach(2)|upper_aerodigestive_tract(1)	47						GCTTCAGCTATAAAAAAAGAGG	0.490												
SSTR4	6754	broad.mit.edu	37	20	23016142	23016142	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr20:23016141_23016141GC>G	uc002wsr.2	+	0	85	c.21_21GC>G	c.(19-21)ctgfs	p.L7fs		NM_001052	NP_001043	P31391	SSR4_HUMAN	Homo sapiens somatostatin receptor 4 (SSTR4), mRNA.	7					G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			breast(1)|central_nervous_system(2)|endometrium(6)|kidney(1)|large_intestine(4)|lung(16)|ovary(1)|upper_aerodigestive_tract(1)	32	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CCTCGACGCTGCCCCCCGGGG	0.791												
ITSN1	6453	broad.mit.edu	37	21	35174740	35174741	+	Frame_Shift_Ins	INS	-	-	G			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr21:35174739_35174740A>AG	uc002yta.1	+	19	2578_2579	c.2310_2311A>AG	c.(2308-2313)aaagggfs	p.K770fs	DONSON_uc002ysn.1_Intron|ITSN1_uc010gmj.3_Intron|ITSN1_uc002ysy.3_Intron|ITSN1_uc002ysx.3_Intron|ITSN1_uc002yth.4_Intron|ITSN1_uc002ysz.3_Intron|ITSN1_uc010gmg.3_Intron|ITSN1_uc010gmh.3_Intron|ITSN1_uc002ysw.3_Frame_Shift_Ins_p.K770fs|ITSN1_uc010gmi.3_Frame_Shift_Ins_p.K733fs|ITSN1_uc002ytb.1_Intron|ITSN1_uc002ytc.1_Intron|ITSN1_uc010gmk.3_Frame_Shift_Ins_p.K733fs|ITSN1_uc010gml.3_Intron|ITSN1_uc002ytd.3_Intron|ITSN1_uc002ytj.2_Intron|ITSN1_uc010gmm.1_Intron|ITSN1_uc002yte.3_Frame_Shift_Ins_p.K704fs|ITSN1_uc021wip.1_Intron|ITSN1_uc002ytf.1_Non-coding_Transcript	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	Homo sapiens intersectin 1 (SH3 domain protein) (ITSN1), transcript variant 1, mRNA.	770	SH3 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	Rho guanyl-nucleotide exchange factor activity|calcium ion binding|proline-rich region binding|protein complex scaffold			breast(1)|cervix(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(3)|kidney(3)|large_intestine(16)|lung(26)|ovary(4)|prostate(1)|skin(4)|stomach(1)|urinary_tract(2)	67						TGGAGGTTAAAGGGGAATGGGT	0.371												
ITSN1	6453	broad.mit.edu	37	21	35260498	35260503	+	In_Frame_Del	DEL	AAGACC	AAGACC	-	rs145593879	byFrequency	TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr21:35260497_35260502AAAGACC>A	uc002yta.1	+	39	5327_5332	c.5059_5064AAAGACC>A	c.(5059-5064)aaagac>A	p.KD1687del	DONSON_uc002ysn.1_Intron|ITSN1_uc002ytb.1_In_Frame_Del_p.KD1682del|ITSN1_uc002ytj.2_In_Frame_Del_p.KD1626del|ITSN1_uc010gmm.1_Non-coding_Transcript	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	Homo sapiens intersectin 1 (SH3 domain protein) (ITSN1), transcript variant 1, mRNA.	1687					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	Rho guanyl-nucleotide exchange factor activity|calcium ion binding|proline-rich region binding|protein complex scaffold			breast(1)|cervix(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(3)|kidney(3)|large_intestine(16)|lung(26)|ovary(4)|prostate(1)|skin(4)|stomach(1)|urinary_tract(2)	67						GGACATCAAGAAAGACCAGGGCTCCA	0.529												
HLCS	3141	broad.mit.edu	37	21	38308768	38308769	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr21:38308767_38308768T>TC	uc010gnb.3	-	4	2391_2392	c.977_978A>GA	c.(976-978)ggafs	p.G326fs	HLCS_uc021wjb.1_Frame_Shift_Ins_p.G326fs|HLCS_uc002yvs.3_Frame_Shift_Ins_p.G326fs|HLCS_uc010gnc.2_Frame_Shift_Ins_p.G473fs	NM_001242784	NP_001229713	P50747	BPL1_HUMAN	Homo sapiens holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) (HLCS), transcript variant 3, mRNA.	326					cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			breast(1)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(8)|liver(1)|lung(8)|ovary(2)|upper_aerodigestive_tract(1)	24		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	GAACAGCTTCTCCCCCGCGAGT	0.545												
DSCAM	1826	broad.mit.edu	37	21	41514615	41514615	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr21:41514614_41514614CG>C	uc002yyq.1	-	17	3729	c.3277_3277CG>G	c.(3277-3279)gaafs	p.E1093fs	DSCAM_uc002yyr.1_Non-coding_Transcript	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Homo sapiens Down syndrome cell adhesion molecule (DSCAM), transcript variant 1, mRNA.	1093	Fibronectin type-III 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding	p.E1093K(2)		NS(2)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(22)|haematopoietic_and_lymphoid_tissue(4)|kidney(6)|large_intestine(22)|lung(47)|ovary(7)|pancreas(2)|prostate(3)|skin(14)|upper_aerodigestive_tract(6)|urinary_tract(4)	142		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGGACATTTTCGGGGGGGTAA	0.408												
MTMR3	8897	broad.mit.edu	37	22	30414048	30414048	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:30414047_30414047TC>T	uc003agv.4	+	15	2134	c.1806_1806TC>T	c.(1804-1806)gatfs	p.D602fs	MTMR3_uc003agu.4_Frame_Shift_Del_p.D602fs|MTMR3_uc003agw.4_Frame_Shift_Del_p.D602fs	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	Homo sapiens myotubularin related protein 3 (MTMR3), transcript variant 3, mRNA.	602					phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity	p.D602D(1)		breast(3)|large_intestine(3)|ovary(2)|skin(8)|upper_aerodigestive_tract(1)	17			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			GCCCTGATGATCCCCCCCTGA	0.622												
MB	4151	broad.mit.edu	37	22	36013257	36013258	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D7-A4YY-01A-11D-A25D-08	TCGA-D7-A4YY-10A-01D-A25E-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607d041c-7219-4cd1-8276-0d3031601b3c	dc39cfd8-eced-4a56-b080-5d8fd03a622f	g.chr22:36013256_36013257T>TC	uc003anz.3	-	0	128_129	c.48_49A>GA	c.(46-51)gggaagfs	p.G16fs	MB_uc003aoa.3_Frame_Shift_Ins_p.G16fs|MB_uc003aob.3_Frame_Shift_Ins_p.G16fs	NM_005368	NP_976312	P02144	MYG_HUMAN	Homo sapiens myoglobin (MB), transcript variant 1, mRNA.	16							heme binding|oxygen transporter activity			lung(1)	1						GCCTCCACCTTCCCCCAGACGT	0.569												
