Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values
AGRN	375790	broad.mit.edu	37	1	979559	979559	+	Silent	SNP	C	C	T	rs146441147		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:979559C>T	uc001ack.1	+	11	2120	c.2070C>T	c.(2068-2070)CGC>CGT	p.R690R		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	690					axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		GCCGGCAGCGCGGTGGCATCT	0.682												
GLTPD1	80772	broad.mit.edu	37	1	1262961	1262961	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:1262961C>T	uc001aeo.2	+	3	878	c.463C>T	c.(463-465)CGC>TGC	p.R155C	CPSF3L_uc001aee.1_5'Flank|CPSF3L_uc001aef.1_5'Flank|CPSF3L_uc009vjz.1_5'Flank|CPSF3L_uc010nyj.1_5'Flank|CPSF3L_uc001aeg.1_5'Flank|CPSF3L_uc001aeh.1_5'Flank|CPSF3L_uc001aei.1_5'Flank|CPSF3L_uc001aej.1_5'Flank|CPSF3L_uc001aek.1_5'Flank|CPSF3L_uc001aem.1_5'Flank|CPSF3L_uc001ael.1_5'Flank|CPSF3L_uc001aen.1_5'Flank	NM_001029885	NP_001025056	Q5TA50	GLTD1_HUMAN	glycolipid transfer protein domain containing 1	155						cytoplasm	glycolipid binding|glycolipid transporter activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;4.95e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CTGGGTCGTGCGCCGCGCCGT	0.721												
DVL1	1855	broad.mit.edu	37	1	1275137	1275137	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:1275137C>T	uc001aer.3	-	9	1012	c.965G>A	c.(964-966)CGG>CAG	p.R322Q	DVL1_uc002quu.2_Missense_Mutation_p.R39Q|DVL1_uc009vka.2_5'UTR|DVL1_uc001aeu.1_Missense_Mutation_p.G9R	NM_004421	NP_004412	O14640	DVL1_HUMAN	dishevelled 1	322	PDZ.				canonical Wnt receptor signaling pathway|dendrite morphogenesis|intracellular signal transduction|negative regulation of protein binding|negative regulation of protein kinase activity|neural tube development|neuromuscular junction development|neurotransmitter secretion|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|receptor clustering|transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, planar cell polarity pathway	cytoplasmic membrane-bounded vesicle|cytosol|plasma membrane|synapse|synaptosome	frizzled binding|identical protein binding|protein kinase binding|signal transducer activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		AACGATCTCCCGCAGCACCCG	0.642												
MXRA8	54587	broad.mit.edu	37	1	1289409	1289409	+	Splice_Site	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:1289409C>T	uc001aew.2	-	8	1253	c.1222_splice	c.e8+1	p.D408_splice	MXRA8_uc001aex.3_Splice_Site_p.A408_splice|MXRA8_uc001aey.3_Splice_Site_p.D408_splice|MXRA8_uc010nyl.1_Splice_Site_p.D408_splice|MXRA8_uc001aez.2_Splice_Site_p.D307_splice|MXRA8_uc001afa.2_Splice_Site_p.D399_splice	NM_032348	NP_115724	Q9BRK3	MXRA8_HUMAN	matrix-remodelling associated 8 precursor							integral to membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		CACTGCCTCACCTAGCTGGAT	0.642												
ATAD3C	219293	broad.mit.edu	37	1	1389866	1389866	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:1389866C>T	uc001aft.2	+	4	1359	c.364C>T	c.(364-366)CGG>TGG	p.R122W		NM_001039211	NP_001034300	Q5T2N8	ATD3C_HUMAN	ATPase family, AAA domain containing 3C	122							ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TGAGGCGCTGCGGCACCCCAT	0.662												
CDK11B	984	broad.mit.edu	37	1	1575796	1575796	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:1575796C>T	uc001agv.1	-	15	1204	c.1093G>A	c.(1093-1095)GAC>AAC	p.D365N	CDK11B_uc009vkj.2_Missense_Mutation_p.D22N|CDK11B_uc001ags.1_Missense_Mutation_p.D223N|CDK11B_uc001agt.1_Missense_Mutation_p.D148N|CDK11B_uc001aha.1_Missense_Mutation_p.D331N|CDK11B_uc001agw.1_Missense_Mutation_p.D320N|CDK11B_uc001agy.1_Missense_Mutation_p.D363N|CDK11B_uc001agx.1_Missense_Mutation_p.D354N|CDK11B_uc001agz.1_Missense_Mutation_p.D109N	NM_033486	NP_277021	P21127	CD11B_HUMAN	cell division cycle 2-like 1 (PITSLRE proteins)	378	Glu-rich.				apoptosis|cell proliferation|mitosis|regulation of cell growth|regulation of mRNA processing|regulation of transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity|protein binding			skin(1)	1						GAATCTCGGTCGAACCGTGAC	0.582												
C1orf86	199990	broad.mit.edu	37	1	2125140	2125140	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:2125140C>T	uc001aiy.2	-	3	434	c.408G>A	c.(406-408)CCG>CCA	p.P136P	C1orf86_uc001aiv.1_RNA|C1orf86_uc001aiw.1_RNA|C1orf86_uc001aix.1_Missense_Mutation_p.R132H	NM_182533	NP_872339	Q6NZ36	CA086_HUMAN	hypothetical protein LOC199990 isoform 2	136											0	all_cancers(77;0.000134)|all_epithelial(69;4.45e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;1.14e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;1.09e-37)|OV - Ovarian serous cystadenocarcinoma(86;1.5e-23)|GBM - Glioblastoma multiforme(42;1.61e-08)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00437)|STAD - Stomach adenocarcinoma(132;0.0134)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.199)		CCTCCACAGACGGCTGCTGCT	0.721												
PEX10	5192	broad.mit.edu	37	1	2337210	2337210	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:2337210G>A	uc001ajh.2	-	6	1045	c.976C>T	c.(976-978)CGC>TGC	p.R326C	PEX10_uc001ajg.2_Missense_Mutation_p.R346C	NM_002617	NP_002608	O60683	PEX10_HUMAN	peroxisome biogenesis factor 10 isoform 2	326					protein import into peroxisome matrix|protein import into peroxisome matrix	integral to peroxisomal membrane|peroxisomal membrane	protein binding|protein C-terminus binding|zinc ion binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(77;0.000247)|all_epithelial(69;9.96e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;5.35e-20)|all_lung(118;2.78e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;1.1e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.02e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00102)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0169)|Lung(427;0.199)		CCGGCTCAGCGGTAGTGCCGA	0.602												
PRDM16	63976	broad.mit.edu	37	1	3342703	3342703	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:3342703C>T	uc001akf.2	+	14	3278	c.3198C>T	c.(3196-3198)GAC>GAT	p.D1066D	PRDM16_uc001akc.2_Silent_p.D1065D|PRDM16_uc001akd.2_Silent_p.D1065D|PRDM16_uc001ake.2_Silent_p.D1066D|PRDM16_uc009vlh.2_Silent_p.D766D	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	1066	Mediates interaction with SKI and regulation of TGF-beta signaling.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CACTTTTAGACGAGAAAGAAG	0.522			T	EVI1	MDS|AML							
MEGF6	1953	broad.mit.edu	37	1	3417557	3417557	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:3417557C>T	uc001akl.2	-	20	2775	c.2548G>A	c.(2548-2550)GGG>AGG	p.G850R	MEGF6_uc001akk.2_Missense_Mutation_p.G745R	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	850	EGF-like 14.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		CCGGTCCACCCGGGGGCACAG	0.647												
MEGF6	1953	broad.mit.edu	37	1	3425206	3425206	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:3425206C>T	uc001akl.2	-	13	1803	c.1576G>A	c.(1576-1578)GAC>AAC	p.D526N	MEGF6_uc001akk.2_Missense_Mutation_p.D421N	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	526	EGF-like 9.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		TTCCTGCAGTCATCACAGGTC	0.627												
CCDC27	148870	broad.mit.edu	37	1	3679950	3679950	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:3679950G>A	uc001akv.2	+	7	1314	c.1233G>A	c.(1231-1233)CTG>CTA	p.L411L		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	411	Glu-rich.									skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		AGGAGGAGCTGCTGGCCCAGC	0.468												
C1orf174	339448	broad.mit.edu	37	1	3809519	3809519	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:3809519T>C	uc001alf.2	-	2	164	c.57A>G	c.(55-57)CGA>CGG	p.R19R	C1orf174_uc009vls.2_RNA	NM_207356	NP_997239	Q8IYL3	CA174_HUMAN	hypothetical protein LOC339448	19											0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_cancers(23;5.09e-25)|all_epithelial(116;9.35e-17)|all_lung(118;1.09e-06)|Lung NSC(185;0.000139)|all_neural(13;0.00287)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0219)|all_hematologic(16;0.027)|Colorectal(325;0.0276)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.0743)|Ovarian(437;0.127)		Epithelial(90;1.55e-39)|OV - Ovarian serous cystadenocarcinoma(86;5.99e-23)|GBM - Glioblastoma multiforme(42;2.22e-17)|Colorectal(212;1.08e-05)|COAD - Colon adenocarcinoma(227;5.49e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000365)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.19)		CCGAACAACTTCGTGCTTTCA	0.562												
AJAP1	55966	broad.mit.edu	37	1	4834505	4834505	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:4834505G>A	uc001alm.1	+	5	1563	c.1182G>A	c.(1180-1182)CGG>CGA	p.R394R	AJAP1_uc001aln.2_Silent_p.R394R	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	394	Targeting signals.|Cytoplasmic (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		CTTCTGATCGGCATCTTATTC	0.547												
CHD5	26038	broad.mit.edu	37	1	6204099	6204099	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:6204099G>A	uc001amb.1	-	12	2019	c.1919C>T	c.(1918-1920)GCC>GTC	p.A640V	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	640	Chromo 2.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GCCCCAGTAGGCCTGCTTGAG	0.612												
CHD5	26038	broad.mit.edu	37	1	6212526	6212526	+	Silent	SNP	G	G	A	rs140463225	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:6212526G>A	uc001amb.1	-	6	916	c.816C>T	c.(814-816)GCC>GCT	p.A272A		NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	272	Lys-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		ACTTGAGCCCGGCCGTCTTTT	0.403												
GPR153	387509	broad.mit.edu	37	1	6313900	6313900	+	Missense_Mutation	SNP	C	C	T	rs141201270	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:6313900C>T	uc001amp.1	-	3	924	c.664G>A	c.(664-666)GCG>ACG	p.A222T		NM_207370	NP_997253	Q6NV75	GP153_HUMAN	G protein-coupled receptor 153	222	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0	Ovarian(185;0.0634)	all_cancers(23;8.07e-33)|all_epithelial(116;4.45e-18)|all_lung(118;1.09e-06)|all_neural(13;3.68e-06)|Lung NSC(185;1.52e-05)|all_hematologic(16;2.39e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00475)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;1.91e-37)|GBM - Glioblastoma multiforme(13;4.87e-29)|OV - Ovarian serous cystadenocarcinoma(86;3.03e-19)|Colorectal(212;1.33e-07)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(365;0.00109)|STAD - Stomach adenocarcinoma(132;0.00313)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.246)		TTGCCCTGCGCGTCCTCCACC	0.672												
ACOT7	11332	broad.mit.edu	37	1	6399491	6399491	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:6399491A>G	uc001ams.2	-	3	605	c.448_splice	c.e3+1	p.G150_splice	ACOT7_uc010nzq.1_Splice_Site_p.G35_splice|ACOT7_uc001amt.2_Splice_Site_p.G140_splice|ACOT7_uc001amu.2_Splice_Site|ACOT7_uc001amv.2_Splice_Site|ACOT7_uc001amq.2_Splice_Site_p.G99_splice|ACOT7_uc001amr.2_Splice_Site_p.G120_splice	NM_181864	NP_863654	O00154	BACH_HUMAN	acyl-CoA thioesterase 7 isoform hBACHb							mitochondrion|nucleus	carboxylesterase activity|fatty-acyl-CoA binding|palmitoyl-CoA hydrolase activity				0	Ovarian(185;0.0634)|all_lung(157;0.175)	all_cancers(23;1.42e-38)|all_epithelial(116;3.96e-23)|all_lung(118;3.69e-08)|Lung NSC(185;8.52e-07)|all_hematologic(16;6.92e-06)|Colorectal(325;4.53e-05)|Acute lymphoblastic leukemia(12;5e-05)|all_neural(13;0.000164)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0393)|Medulloblastoma(700;0.211)		Epithelial(90;9.16e-37)|GBM - Glioblastoma multiforme(13;5.89e-29)|OV - Ovarian serous cystadenocarcinoma(86;7.63e-19)|Colorectal(212;1.27e-07)|COAD - Colon adenocarcinoma(227;2.06e-05)|Kidney(185;7.74e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00129)|BRCA - Breast invasive adenocarcinoma(365;0.00132)|STAD - Stomach adenocarcinoma(132;0.00195)|READ - Rectum adenocarcinoma(331;0.0481)		TCCCAGAAGTACCTGTGAGGA	0.597												
TNFRSF25	8718	broad.mit.edu	37	1	6524767	6524767	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:6524767G>A	uc001ane.2	-	4	396	c.308C>T	c.(307-309)GCG>GTG	p.A103V	TNFRSF25_uc001ana.2_Intron|TNFRSF25_uc001anb.2_RNA|TNFRSF25_uc001anc.2_RNA|TNFRSF25_uc001and.2_5'UTR|TNFRSF25_uc009vlz.2_RNA|TNFRSF25_uc001anf.2_Missense_Mutation_p.A103V|TNFRSF25_uc001ang.2_Missense_Mutation_p.A58V|TNFRSF25_uc001anh.2_Missense_Mutation_p.A103V|TNFRSF25_uc001ani.1_Missense_Mutation_p.A103V	NM_003790	NP_003781	Q93038	TNR25_HUMAN	tumor necrosis factor receptor superfamily,	103	TNFR-Cys 2.|Extracellular (Potential).				apoptosis|induction of apoptosis by extracellular signals	cytosol|extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity	p.A103A(1)		central_nervous_system(2)|breast(1)	3	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Acute lymphoblastic leukemia(12;0.00157)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;4.58e-35)|GBM - Glioblastoma multiforme(13;3.06e-27)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|BRCA - Breast invasive adenocarcinoma(365;0.00105)|STAD - Stomach adenocarcinoma(132;0.00158)|READ - Rectum adenocarcinoma(331;0.0419)		GTTCTCCAGCGCCACCTGGGA	0.592												
TAS1R1	80835	broad.mit.edu	37	1	6631009	6631009	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:6631009G>A	uc001ant.2	+	2	232	c.232G>A	c.(232-234)GCT>ACT	p.A78T	TAS1R1_uc001anu.2_Missense_Mutation_p.A78T|TAS1R1_uc001anv.2_Missense_Mutation_p.A78T|TAS1R1_uc001anw.2_Missense_Mutation_p.A78T	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	78	Extracellular (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		CCTCTTCCAGGCTATGCGGCT	0.542												
KLHL21	9903	broad.mit.edu	37	1	6659354	6659354	+	Missense_Mutation	SNP	G	G	A	rs141248147		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:6659354G>A	uc001aoa.2	-	2	1232	c.1180C>T	c.(1180-1182)CGC>TGC	p.R394C	KLHL21_uc001anz.1_Missense_Mutation_p.R394C|KLHL21_uc009vme.2_Missense_Mutation_p.R27C	NM_014851	NP_055666	Q9UJP4	KLH21_HUMAN	kelch-like 21	394	Kelch 3.				anaphase|cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|cytoplasm|polar microtubule				central_nervous_system(1)	1	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;7.39e-28)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;1.36e-07)|COAD - Colon adenocarcinoma(227;1.4e-05)|Kidney(185;4.95e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000528)|KIRC - Kidney renal clear cell carcinoma(229;0.000927)|STAD - Stomach adenocarcinoma(132;0.0172)|READ - Rectum adenocarcinoma(331;0.0644)		TGGTCATAGCGCTCGGTGCTG	0.657												
PHF13	148479	broad.mit.edu	37	1	6679933	6679933	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:6679933A>G	uc001aob.3	+	3	583	c.212A>G	c.(211-213)GAC>GGC	p.D71G		NM_153812	NP_722519	Q86YI8	PHF13_HUMAN	PHD finger protein 13	71					cell division|chromatin modification|mitotic chromosome condensation	nucleoplasm	chromatin binding|methylated histone residue binding|zinc ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;1.46e-33)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.19e-07)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|STAD - Stomach adenocarcinoma(132;0.0165)|READ - Rectum adenocarcinoma(331;0.0642)		GACGGCTGGGACGCGGGTTTC	0.572												
PER3	8863	broad.mit.edu	37	1	7890044	7890044	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:7890044A>G	uc001aoo.2	+	18	3185	c.3010A>G	c.(3010-3012)ACT>GCT	p.T1004A	PER3_uc009vmg.1_Missense_Mutation_p.T1012A|PER3_uc009vmh.1_Missense_Mutation_p.T1005A|PER3_uc001aop.2_Missense_Mutation_p.T1013A|PER3_uc010nzw.1_Missense_Mutation_p.T693A	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	1004	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		ATCCCATCCTACTGCCAGCGC	0.587												
ERRFI1	54206	broad.mit.edu	37	1	8073280	8073280	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:8073280A>G	uc001aoz.2	-	4	1628	c.1379T>C	c.(1378-1380)GTT>GCT	p.V460A		NM_018948	NP_061821	Q9UJM3	ERRFI_HUMAN	mitogen-inducible gene 6 protein	460					lung alveolus development|lung epithelium development|lung vasculature development|negative regulation of epidermal growth factor receptor activity|negative regulation of protein autophosphorylation|regulation of keratinocyte differentiation|response to stress|skin morphogenesis	cytoplasm|extrinsic to internal side of plasma membrane|nucleus	protein kinase binding|Rho GTPase activator activity			ovary(1)	1	Ovarian(185;0.06)|all_lung(157;0.151)	all_epithelial(116;1.76e-16)|all_lung(118;3.66e-05)|Lung NSC(185;0.000163)|Renal(390;0.000469)|Colorectal(325;0.0033)|Breast(348;0.0044)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.33e-70)|GBM - Glioblastoma multiforme(8;8.05e-37)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;6.9e-06)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.000985)|READ - Rectum adenocarcinoma(331;0.0642)		CTAAGGAGAAACCACATAGGA	0.438												
SLC45A1	50651	broad.mit.edu	37	1	8397983	8397983	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:8397983T>C	uc001apb.2	+	6	1705	c.1705T>C	c.(1705-1707)TAC>CAC	p.Y569H	SLC45A1_uc001apc.2_Missense_Mutation_p.Y267H	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	569					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GTATCAGAAGTACAACAGCGG	0.597												
CA6	765	broad.mit.edu	37	1	9005977	9005977	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:9005977T>C	uc001apm.2	+	1	56	c.32T>C	c.(31-33)TTC>TCC	p.F11S	CA6_uc009vmn.2_Missense_Mutation_p.F11S	NM_001215	NP_001206	P23280	CAH6_HUMAN	carbonic anhydrase VI precursor	11					one-carbon metabolic process	extracellular region	carbonate dehydratase activity|zinc ion binding			ovary(2)	2	Ovarian(185;0.112)|all_lung(157;0.143)	all_epithelial(116;1.02e-19)|all_lung(118;3.6e-06)|Lung NSC(185;7.94e-06)|Renal(390;0.000147)|Breast(348;0.00123)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.9e-07)|COAD - Colon adenocarcinoma(227;8.28e-05)|Kidney(185;0.000268)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|STAD - Stomach adenocarcinoma(132;0.00184)|BRCA - Breast invasive adenocarcinoma(304;0.00192)|READ - Rectum adenocarcinoma(331;0.0649)		CTGTCCCTGTTCCTGCTGGGT	0.542												
H6PD	9563	broad.mit.edu	37	1	9305622	9305622	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:9305622T>C	uc001apt.2	+	2	900	c.627_splice	c.e2+2	p.Q209_splice		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor							endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	GGCAAGCAGGTGAGCATCAGC	0.602												
TMEM201	199953	broad.mit.edu	37	1	9661349	9661349	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:9661349A>G	uc001apz.2	+	5	805	c.793A>G	c.(793-795)ACC>GCC	p.T265A	TMEM201_uc001apy.2_Missense_Mutation_p.T265A	NM_001130924	NP_001124396	Q5SNT2	TM201_HUMAN	transmembrane protein 201 isoform 1	265						integral to membrane|nuclear inner membrane					0	all_lung(157;0.222)	all_epithelial(116;2.09e-14)|Renal(390;0.000469)|all_lung(118;0.000521)|Lung NSC(185;0.000744)|Colorectal(325;0.0062)|Breast(348;0.0157)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.5e-08)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|STAD - Stomach adenocarcinoma(132;0.00345)|READ - Rectum adenocarcinoma(331;0.0419)		CAATGGCACCACCCCTGGGGC	0.687												
RBP7	116362	broad.mit.edu	37	1	10067724	10067724	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:10067724G>A	uc001aqq.2	+	2	232	c.170G>A	c.(169-171)AGC>AAC	p.S57N	RBP7_uc009vms.2_RNA	NM_052960	NP_443192	Q96R05	RET7_HUMAN	retinol binding protein 7, cellular	57						cytoplasm	retinal binding|retinol binding|transporter activity				0		all_lung(284;0.000407)|Renal(390;0.000469)|Lung NSC(185;0.000577)|Colorectal(325;0.0062)|Breast(348;0.00686)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.5e-08)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;0.000249)|BRCA - Breast invasive adenocarcinoma(304;0.000302)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00856)|READ - Rectum adenocarcinoma(331;0.0419)	Vitamin A(DB00162)	ACGAACAGCAGCCTAAGGAAC	0.383												
KIF1B	23095	broad.mit.edu	37	1	10381867	10381867	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:10381867C>T	uc001aqx.3	+	24	2512	c.2310C>T	c.(2308-2310)GCC>GCT	p.A770A	KIF1B_uc001aqw.3_Silent_p.A724A|KIF1B_uc001aqy.2_Silent_p.A744A|KIF1B_uc001aqz.2_Silent_p.A770A|KIF1B_uc001ara.2_Silent_p.A730A|KIF1B_uc001arb.2_Silent_p.A756A	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	770					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		GGGGCAATGCCGTGTACCTAA	0.512												
KIF1B	23095	broad.mit.edu	37	1	10384880	10384880	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:10384880G>T	uc001aqx.3	+	26	2804	c.2602G>T	c.(2602-2604)GAC>TAC	p.D868Y	KIF1B_uc001aqw.3_Missense_Mutation_p.D822Y|KIF1B_uc001aqy.2_Missense_Mutation_p.D842Y|KIF1B_uc001aqz.2_Missense_Mutation_p.D868Y|KIF1B_uc001ara.2_Missense_Mutation_p.D828Y|KIF1B_uc001arb.2_Missense_Mutation_p.D854Y	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	868	Potential.				anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		CAGTGCCCAAGACGAAAGCGA	0.468												
PGD	5226	broad.mit.edu	37	1	10460487	10460487	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:10460487A>C	uc001arc.2	+	3	212	c.122A>C	c.(121-123)GAT>GCT	p.D41A	PGD_uc001ard.2_5'UTR|PGD_uc010oak.1_Missense_Mutation_p.D41A|PGD_uc010oal.1_Missense_Mutation_p.D28A	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	41					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		AAAGTTGATGATTTCTTGGCC	0.502												
TARDBP	23435	broad.mit.edu	37	1	11078874	11078874	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:11078874T>C	uc001art.2	+	4	621	c.487T>C	c.(487-489)TCA>CCA	p.S163P	TARDBP_uc010oap.1_Missense_Mutation_p.S47P	NM_007375	NP_031401	Q13148	TADBP_HUMAN	TAR DNA binding protein	163	RRM 1.			Missing: Completely abolishes RNA binding.	3'-UTR-mediated mRNA stabilization|cell death|mRNA processing|negative regulation by host of viral transcription|RNA splicing|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|mRNA 3'-UTR binding|nucleotide binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0578)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.37e-07)|COAD - Colon adenocarcinoma(227;7.38e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)		GAAAGTAATGTCACAGCGACA	0.398												
EXOSC10	5394	broad.mit.edu	37	1	11131025	11131025	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:11131025G>A	uc001asa.2	-	21	2298	c.2248C>T	c.(2248-2250)CGG>TGG	p.R750W	EXOSC10_uc001asb.2_Missense_Mutation_p.R725W	NM_001001998	NP_001001998	Q01780	EXOSX_HUMAN	exosome component 10 isoform 1	750					CUT catabolic process|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear polyadenylation-dependent rRNA catabolic process|nuclear retention of unspliced pre-mRNA at the site of transcription|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasm|nuclear exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5' exonuclease activity|exoribonuclease activity|identical protein binding|nucleotide binding|protein serine/threonine kinase activity|RNA binding			upper_aerodigestive_tract(1)	1	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.18e-07)|COAD - Colon adenocarcinoma(227;8.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000315)|Kidney(185;0.000832)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|READ - Rectum adenocarcinoma(331;0.0526)|STAD - Stomach adenocarcinoma(313;0.202)		GCCTGTTCCCGGGCAGCTGCA	0.582												
EXOSC10	5394	broad.mit.edu	37	1	11142796	11142796	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:11142796T>C	uc001asa.2	-	10	1279	c.1229A>G	c.(1228-1230)TAC>TGC	p.Y410C	EXOSC10_uc001asb.2_Missense_Mutation_p.Y410C|EXOSC10_uc009vmy.1_Missense_Mutation_p.Y410C	NM_001001998	NP_001001998	Q01780	EXOSX_HUMAN	exosome component 10 isoform 1	410					CUT catabolic process|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear polyadenylation-dependent rRNA catabolic process|nuclear retention of unspliced pre-mRNA at the site of transcription|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasm|nuclear exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5' exonuclease activity|exoribonuclease activity|identical protein binding|nucleotide binding|protein serine/threonine kinase activity|RNA binding			upper_aerodigestive_tract(1)	1	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.18e-07)|COAD - Colon adenocarcinoma(227;8.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000315)|Kidney(185;0.000832)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|READ - Rectum adenocarcinoma(331;0.0526)|STAD - Stomach adenocarcinoma(313;0.202)		CACGTTGCAGTAGAGTTTCAG	0.448												
MTOR	2475	broad.mit.edu	37	1	11288788	11288788	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:11288788G>A	uc001asd.2	-	19	3088	c.2967C>T	c.(2965-2967)TTC>TTT	p.F989F		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	989	HEAT 4.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						CCTGGGGCAGGAACTGCACAC	0.527												
UBIAD1	29914	broad.mit.edu	37	1	11333988	11333988	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:11333988T>C	uc001asg.2	+	1	734	c.400T>C	c.(400-402)TTC>CTC	p.F134L		NM_013319	NP_037451	Q9Y5Z9	UBIA1_HUMAN	UbiA prenyltransferase domain containing 1	134	Helical; (Potential).				menaquinone biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrion|nucleus	prenyltransferase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.012)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.52e-06)|COAD - Colon adenocarcinoma(227;0.000254)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0487)		TGTCGTCCGGTTCGGAGTCTT	0.522												
PTCHD2	57540	broad.mit.edu	37	1	11580770	11580770	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:11580770T>C	uc001ash.3	+	10	2365	c.2227T>C	c.(2227-2229)TCC>CCC	p.S743P	PTCHD2_uc001asi.1_Missense_Mutation_p.S743P	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	743	Helical; (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CCTCATCTTGTCCCTGGTGTT	0.652												
PTCHD2	57540	broad.mit.edu	37	1	11586864	11586864	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:11586864G>A	uc001ash.3	+	13	2908	c.2770G>A	c.(2770-2772)GTG>ATG	p.V924M	PTCHD2_uc001asi.1_Missense_Mutation_p.V924M	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	924	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CAGCTTCTACGTGGCCACCAA	0.607												
PLOD1	5351	broad.mit.edu	37	1	12034725	12034725	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:12034725T>C	uc001atm.2	+	19	2135	c.2044T>C	c.(2044-2046)TTC>CTC	p.F682L	PLOD1_uc010obb.1_Missense_Mutation_p.F729L	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor	682	Fe2OG dioxygenase.				epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	GGGCTGTCGGTTCCTGCGCTA	0.632												
MFN2	9927	broad.mit.edu	37	1	12057394	12057394	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:12057394A>G	uc001atn.3	+	6	968	c.515A>G	c.(514-516)CAG>CGG	p.Q172R	MFN2_uc009vni.2_Missense_Mutation_p.Q172R	NM_014874	NP_055689	O95140	MFN2_HUMAN	mitofusin 2	172	Cytoplasmic (Potential).				blood coagulation|mitochondrial fusion|mitochondrial membrane organization|mitochondrion localization|negative regulation of Ras protein signal transduction|negative regulation of smooth muscle cell proliferation|protein targeting to mitochondrion	cytosol|integral to membrane|intrinsic to mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.25e-06)|COAD - Colon adenocarcinoma(227;0.000302)|BRCA - Breast invasive adenocarcinoma(304;0.000329)|Kidney(185;0.000896)|KIRC - Kidney renal clear cell carcinoma(229;0.00274)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		CAGGACAAGCAGCTCCATGCC	0.567												
MFN2	9927	broad.mit.edu	37	1	12065963	12065963	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:12065963G>A	uc001atn.3	+	15	2144	c.1691G>A	c.(1690-1692)CGG>CAG	p.R564Q	MFN2_uc009vni.2_Missense_Mutation_p.R564Q	NM_014874	NP_055689	O95140	MFN2_HUMAN	mitofusin 2	564	Cytoplasmic (Potential).				blood coagulation|mitochondrial fusion|mitochondrial membrane organization|mitochondrion localization|negative regulation of Ras protein signal transduction|negative regulation of smooth muscle cell proliferation|protein targeting to mitochondrion	cytosol|integral to membrane|intrinsic to mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding	p.R564W(1)		ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.25e-06)|COAD - Colon adenocarcinoma(227;0.000302)|BRCA - Breast invasive adenocarcinoma(304;0.000329)|Kidney(185;0.000896)|KIRC - Kidney renal clear cell carcinoma(229;0.00274)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		AACAGCCGTCGGGCCTTGATG	0.552												
TNFRSF1B	7133	broad.mit.edu	37	1	12248947	12248947	+	Missense_Mutation	SNP	C	C	T	rs139221787		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:12248947C>T	uc001att.2	+	2	262	c.173C>T	c.(172-174)TCG>TTG	p.S58L	TNFRSF1B_uc001atu.2_Intron|TNFRSF1B_uc009vnk.2_RNA	NM_001066	NP_001057	P20333	TNR1B_HUMAN	tumor necrosis factor receptor 2 precursor	58	Extracellular (Potential).|TNFR-Cys 1.				apoptosis	extracellular region|integral to membrane|membrane raft|plasma membrane	tumor necrosis factor receptor activity			liver(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.72e-05)|all_lung(284;9.92e-05)|Renal(390;0.000147)|Colorectal(325;0.000584)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;5.52e-07)|COAD - Colon adenocarcinoma(227;0.000345)|BRCA - Breast invasive adenocarcinoma(304;0.000353)|Kidney(185;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00302)|STAD - Stomach adenocarcinoma(313;0.00815)|READ - Rectum adenocarcinoma(331;0.0284)	Etanercept(DB00005)|Infliximab(DB00065)	AGCAAATGCTCGCCGGGTGAG	0.617												
VPS13D	55187	broad.mit.edu	37	1	12336565	12336565	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:12336565T>C	uc001atv.2	+	19	3061	c.2920T>C	c.(2920-2922)TAC>CAC	p.Y974H	VPS13D_uc001atw.2_Missense_Mutation_p.Y974H|VPS13D_uc001atx.2_Missense_Mutation_p.Y162H	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	974					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CAATGGCCGGTACATTTCTGT	0.507											OREG0013110	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
PRAMEF1	65121	broad.mit.edu	37	1	12856081	12856081	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:12856081C>A	uc001auj.1	+	4	1464	c.1361C>A	c.(1360-1362)CCC>CAC	p.P454H		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	454											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTCATTGGCCCCACCCCCTGC	0.562												
PRAMEF16	654348	broad.mit.edu	37	1	13497743	13497743	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:13497743T>C	uc001aux.2	+	3	1070	c.1040T>C	c.(1039-1041)GTT>GCT	p.V347A		NM_001045480	NP_001038945	Q5VWM1	PRA16_HUMAN	PRAME family member 16	347											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTAGAGAAAGTTGCTGCTACT	0.542												
CELA2B	51032	broad.mit.edu	37	1	15817807	15817807	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:15817807A>G	uc001awl.2	+	8	835	c.810A>G	c.(808-810)TAA>TAG	p.*270*	CASP9_uc001awm.1_3'UTR	NM_015849	NP_056933	P08218	CEL2B_HUMAN	elastase 2B preproprotein	270					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						CAAATAACTAACCAAAAGAAG	0.428												
TMEM82	388595	broad.mit.edu	37	1	16069351	16069351	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:16069351T>A	uc001axc.2	+	2	248	c.110T>A	c.(109-111)GTC>GAC	p.V37D		NM_001013641	NP_001013663	A0PJX8	TMM82_HUMAN	transmembrane protein 82	37	Leu-rich.|Helical; (Potential).					integral to membrane				breast(1)|central_nervous_system(1)	2		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.73e-07)|COAD - Colon adenocarcinoma(227;3.49e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000114)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCCCTTGGAGTCTTGGTCCTG	0.642												
SPEN	23013	broad.mit.edu	37	1	16257562	16257562	+	Silent	SNP	A	A	G	rs139671958	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:16257562A>G	uc001axk.1	+	11	5031	c.4827A>G	c.(4825-4827)AAA>AAG	p.K1609K	SPEN_uc010obp.1_Silent_p.K1568K	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1609	Potential.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		AGGTTGAGAAACAGGAAGATA	0.433												
ZBTB17	7709	broad.mit.edu	37	1	16271569	16271569	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:16271569C>T	uc001axl.3	-	7	1029	c.790G>A	c.(790-792)GAG>AAG	p.E264K	ZBTB17_uc010obq.1_Missense_Mutation_p.E181K|ZBTB17_uc010obr.1_Missense_Mutation_p.E264K|ZBTB17_uc010obs.1_Missense_Mutation_p.E188K|ZBTB17_uc010obt.1_Missense_Mutation_p.E201K|ZBTB17_uc010obu.1_Missense_Mutation_p.E188K|ZBTB17_uc009vom.1_Missense_Mutation_p.E207K	NM_003443	NP_003434	Q13105	ZBT17_HUMAN	zinc finger and BTB domain containing 17	264					negative regulation of cell cycle	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|Colorectal(212;4.12e-07)|COAD - Colon adenocarcinoma(227;2.43e-05)|BRCA - Breast invasive adenocarcinoma(304;9.97e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0649)		TCGTTCTCCTCGGGGGCCTCT	0.557												
FBXO42	54455	broad.mit.edu	37	1	16577504	16577504	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:16577504C>T	uc001ayg.2	-	10	2031	c.1815G>A	c.(1813-1815)GGG>GGA	p.G605G	FBXO42_uc001aye.3_Silent_p.G323G|FBXO42_uc001ayf.2_Silent_p.G512G	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	605										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		CTTGGGCAGGCCCTGGGCGAG	0.592												
NBPF1	55672	broad.mit.edu	37	1	16895594	16895594	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:16895594T>C	uc009vos.1	-	23	3476	c.2588A>G	c.(2587-2589)CAA>CGA	p.Q863R	NBPF1_uc009vot.1_Missense_Mutation_p.Q321R|NBPF1_uc001ayz.1_Missense_Mutation_p.Q321R|NBPF1_uc010oce.1_Missense_Mutation_p.Q592R	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	863	NBPF 4.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		CATGCAGACTTGCTGTTCCTC	0.483												
RCC2	55920	broad.mit.edu	37	1	17749323	17749323	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:17749323T>C	uc001bal.2	-	4	580	c.533A>G	c.(532-534)GAG>GGG	p.E178G	RCC2_uc001bam.2_Missense_Mutation_p.E178G	NM_001136204	NP_001129676	Q9P258	RCC2_HUMAN	regulator of chromosome condensation 2	178	RCC1 2.				cell division|mitotic prometaphase	chromosome, centromeric region|cytosol|microtubule|nucleolus|spindle					0		Colorectal(325;0.000147)|Breast(348;0.00122)|Renal(390;0.00145)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;7.69e-06)|COAD - Colon adenocarcinoma(227;1.19e-05)|Kidney(64;0.000189)|KIRC - Kidney renal clear cell carcinoma(64;0.00273)|STAD - Stomach adenocarcinoma(196;0.0135)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.19)		CTGCCCCTTCTCATTTCGACC	0.532												
ACTL8	81569	broad.mit.edu	37	1	18149614	18149614	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:18149614G>A	uc001bat.2	+	2	327	c.111G>A	c.(109-111)CCG>CCA	p.P37P		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	37						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		ACTACCTACCGTGCAAGGAGA	0.587												
PAX7	5081	broad.mit.edu	37	1	19018395	19018395	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:19018395A>G	uc001bay.2	+	5	1332	c.734A>G	c.(733-735)TAC>TGC	p.Y245C	PAX7_uc001baz.2_Missense_Mutation_p.Y243C|PAX7_uc010oct.1_Missense_Mutation_p.Y245C	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	245	Homeobox.				anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		CCAGACATATACACCCGCGAG	0.612			T	FOXO1A	alveolar rhabdomyosarcoma							
PAX7	5081	broad.mit.edu	37	1	19029776	19029776	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:19029776G>T	uc001bay.2	+	7	1739	c.1141G>T	c.(1141-1143)GGC>TGC	p.G381C	PAX7_uc001baz.2_Missense_Mutation_p.G379C|PAX7_uc010oct.1_Missense_Mutation_p.G381C	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	381					anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		GGTCAGCAACGGCCTGTCTCC	0.622			T	FOXO1A	alveolar rhabdomyosarcoma							
ALDH4A1	8659	broad.mit.edu	37	1	19201970	19201970	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:19201970A>G	uc001bbb.2	-	13	1642	c.1366T>C	c.(1366-1368)TAC>CAC	p.Y456H	ALDH4A1_uc010ocu.1_Missense_Mutation_p.Y396H|ALDH4A1_uc001bbc.2_Missense_Mutation_p.Y456H	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	456					proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	GGGTAGACGTACACAGACAGT	0.622											OREG0013164	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
UBR4	23352	broad.mit.edu	37	1	19449347	19449347	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:19449347A>T	uc001bbi.2	-	66	9800	c.9796T>A	c.(9796-9798)TAT>AAT	p.Y3266N	UBR4_uc001bbk.1_Missense_Mutation_p.Y913N	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3266					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		AGTGTGTCATATTGCAAGGCG	0.567												
KIF17	57576	broad.mit.edu	37	1	21009336	21009336	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:21009336G>A	uc001bdr.3	-	11	2391	c.2273C>T	c.(2272-2274)GCC>GTC	p.A758V	KIF17_uc001bdp.3_Missense_Mutation_p.A36V|KIF17_uc001bdq.3_Missense_Mutation_p.A36V|KIF17_uc009vpx.2_Missense_Mutation_p.A128V|KIF17_uc001bds.3_Missense_Mutation_p.A758V	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	758	Potential.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		CTTGTTCTTGGCCTGCTCTCC	0.602												
HP1BP3	50809	broad.mit.edu	37	1	21083671	21083671	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:21083671C>A	uc001bdw.1	-	9	1109	c.969G>T	c.(967-969)TCG>TCT	p.S323S	HP1BP3_uc001bdv.1_Silent_p.S285S|HP1BP3_uc010odh.1_Silent_p.S285S|HP1BP3_uc001bdy.1_Silent_p.S323S|HP1BP3_uc001bdz.2_RNA|HP1BP3_uc001bea.2_Silent_p.S322S|HP1BP3_uc010odf.1_5'UTR|HP1BP3_uc010odg.1_Silent_p.S171S	NM_016287	NP_057371	Q5SSJ5	HP1B3_HUMAN	HP1-BP74	323	H15 2.				nucleosome assembly	nucleosome|nucleus	DNA binding			central_nervous_system(1)|skin(1)	2		all_lung(284;6.55e-06)|Lung NSC(340;6.59e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.26e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00015)|GBM - Glioblastoma multiforme(114;0.000521)|Kidney(64;0.000529)|STAD - Stomach adenocarcinoma(196;0.00311)|KIRC - Kidney renal clear cell carcinoma(64;0.00687)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.201)		GGAATGTCCCCGAAGCACCTT	0.343												
RAP1GAP	5909	broad.mit.edu	37	1	21938061	21938061	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:21938061G>T	uc001bex.2	-	13	985	c.727C>A	c.(727-729)CTG>ATG	p.L243M	RAP1GAP_uc001bev.2_Missense_Mutation_p.L243M|RAP1GAP_uc001bew.2_Missense_Mutation_p.L307M|RAP1GAP_uc001bey.2_Missense_Mutation_p.L243M	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	243	Rap-GAP.				regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		GTCACGTCCAGGCCTCCTCGG	0.662												
HSPG2	3339	broad.mit.edu	37	1	22169859	22169859	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:22169859C>T	uc001bfj.2	-	66	8729	c.8689G>A	c.(8689-8691)GGA>AGA	p.G2897R	HSPG2_uc009vqd.2_Missense_Mutation_p.G2898R	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2897	Ig-like C2-type 14.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CCTGAGCTTCCGGTCACTTGG	0.642												
HSPG2	3339	broad.mit.edu	37	1	22179505	22179505	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:22179505C>T	uc001bfj.2	-	51	6538	c.6498G>A	c.(6496-6498)GGG>GGA	p.G2166G	HSPG2_uc009vqd.2_Silent_p.G2167G	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2166	Ig-like C2-type 7.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CCAGGGTCTGCCCTTCCGCCA	0.697												
EPHA8	2046	broad.mit.edu	37	1	22902826	22902826	+	Silent	SNP	C	C	T	rs145476843	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:22902826C>T	uc001bfx.1	+	3	401	c.276C>T	c.(274-276)GAC>GAT	p.D92D	EPHA8_uc001bfw.2_Silent_p.D92D	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	92	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TCCCCCGAGACGGCGCCCGGC	0.607												
EPHA8	2046	broad.mit.edu	37	1	22927263	22927263	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:22927263C>T	uc001bfx.1	+	14	2623	c.2498C>T	c.(2497-2499)GCC>GTC	p.A833V		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	833	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GAGGTGCTGGCCTATGGGGAG	0.682												
HTR1D	3352	broad.mit.edu	37	1	23520184	23520184	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:23520184G>A	uc001bgn.2	-	1	1039	c.529C>T	c.(529-531)CGG>TGG	p.R177W		NM_000864	NP_000855	P28221	5HT1D_HUMAN	5-hydroxytryptamine (serotonin) receptor 1D	177	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|intestine smooth muscle contraction|synaptic transmission	integral to plasma membrane	serotonin receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000779)|all_lung(284;0.00135)|Breast(348;0.0385)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0561)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;4.69e-27)|Colorectal(126;4.86e-08)|COAD - Colon adenocarcinoma(152;2.86e-06)|GBM - Glioblastoma multiforme(114;0.00012)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(1967;0.00122)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.083)|LUSC - Lung squamous cell carcinoma(448;0.185)	Almotriptan(DB00918)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Tegaserod(DB01079)|Ziprasidone(DB00246)|Zolmitriptan(DB00315)	TTGGCCTGCCGCCAGAAGAGC	0.597												
HNRNPR	10236	broad.mit.edu	37	1	23637458	23637458	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:23637458T>C	uc001bgr.3	-	11	1550	c.1391A>G	c.(1390-1392)TAC>TGC	p.Y464C	HNRNPR_uc001bgo.2_Missense_Mutation_p.Y74C|HNRNPR_uc001bgp.3_Missense_Mutation_p.Y467C|HNRNPR_uc009vqk.2_Missense_Mutation_p.Y366C|HNRNPR_uc001bgs.3_Missense_Mutation_p.Y363C|HNRNPR_uc010odw.1_Missense_Mutation_p.Y426C|HNRNPR_uc010odx.1_Missense_Mutation_p.Y304C|HNRNPR_uc009vql.2_Missense_Mutation_p.Y325C	NM_005826	NP_005817	O43390	HNRPR_HUMAN	heterogeneous nuclear ribonucleoprotein R	464	3 X 11 AA approximate repeats of D-D-Y-Y- G-Y-D-Y-H-D-Y.|RNA-binding RGG-box.|1; approximate.					catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00394)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;6.83e-27)|Colorectal(126;6.01e-08)|COAD - Colon adenocarcinoma(152;3.32e-06)|GBM - Glioblastoma multiforme(114;6.69e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00357)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0875)|LUSC - Lung squamous cell carcinoma(448;0.19)		ATAGCCGTAGTAATCTGGAGG	0.468												
TCEB3	6924	broad.mit.edu	37	1	24077589	24077589	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:24077589A>G	uc001bho.2	+	4	632	c.572A>G	c.(571-573)TAC>TGC	p.Y191C		NM_003198	NP_003189	Q14241	ELOA1_HUMAN	elongin A	191					positive regulation of viral transcription|regulation of transcription from RNA polymerase II promoter|transcription elongation from RNA polymerase II promoter|viral reproduction	integral to membrane	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000112)|all_lung(284;0.00016)|Renal(390;0.000219)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;2.42e-24)|Colorectal(126;5.5e-08)|COAD - Colon adenocarcinoma(152;3.09e-06)|GBM - Glioblastoma multiforme(114;4.74e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000973)|KIRC - Kidney renal clear cell carcinoma(1967;0.00334)|STAD - Stomach adenocarcinoma(196;0.0127)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.187)		TCACCAACTTACTCTTCAGAC	0.483											OREG0013232	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
NIPAL3	57185	broad.mit.edu	37	1	24776017	24776017	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:24776017T>C	uc001bjh.2	+	6	848	c.441T>C	c.(439-441)GGT>GGC	p.G147G	NIPAL3_uc010oek.1_Silent_p.G147G|NIPAL3_uc001bjg.2_Silent_p.G147G|NIPAL3_uc009vrc.2_Silent_p.G65G	NM_020448	NP_065181	Q6P499	NPAL3_HUMAN	NIPA-like domain containing 3	147	Helical; (Potential).					integral to membrane					0						CTGTCGTGGGTACCTACCTGC	0.557												
TMEM50A	23585	broad.mit.edu	37	1	25678158	25678158	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:25678158A>G	uc001bke.2	+	4	398	c.248A>G	c.(247-249)TAC>TGC	p.Y83C	TMEM50A_uc010oeq.1_Missense_Mutation_p.Y83C|TMEM50A_uc009vrr.2_RNA|TMEM50A_uc009vrs.2_RNA	NM_014313	NP_055128	O95807	TM50A_HUMAN	small membrane protein 1	83						endoplasmic reticulum|integral to membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;3.47e-27)|Colorectal(126;1.1e-08)|COAD - Colon adenocarcinoma(152;7.48e-07)|STAD - Stomach adenocarcinoma(196;0.00035)|BRCA - Breast invasive adenocarcinoma(304;0.00047)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|GBM - Glioblastoma multiforme(114;0.00106)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.204)		GGTGATAGTTACAGTGAAGGT	0.368												
RHCE	6006	broad.mit.edu	37	1	25715467	25715467	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:25715467C>T	uc001bkf.2	-	6	1025	c.939G>A	c.(937-939)CCG>CCA	p.P313P	RHCE_uc001bkg.2_Silent_p.P313P|RHCE_uc001bkh.2_Silent_p.P208P|RHCE_uc001bki.2_Intron|RHCE_uc001bkj.2_Silent_p.P297P	NM_020485	NP_065231	P18577	RHCE_HUMAN	Rhesus blood group, CcEe antigens isoform 1	313						integral to plasma membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0426)|OV - Ovarian serous cystadenocarcinoma(117;2.12e-27)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|STAD - Stomach adenocarcinoma(196;0.00035)|KIRC - Kidney renal clear cell carcinoma(1967;0.000769)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|GBM - Glioblastoma multiforme(114;0.00458)|READ - Rectum adenocarcinoma(331;0.0649)		AGTTTCTTACCGGCAGGCACT	0.592												
TMEM57	55219	broad.mit.edu	37	1	25775373	25775373	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:25775373G>A	uc001bkk.2	+	3	499	c.297G>A	c.(295-297)TGG>TGA	p.W99*	TMEM57_uc009vru.2_Nonsense_Mutation_p.W99*|TMEM57_uc009vrv.2_Intron|TMEM57_uc009vrt.2_RNA	NM_018202	NP_060672	Q8N5G2	MACOI_HUMAN	transmembrane protein 57	99						axon|integral to membrane|neuron projection terminus|nuclear membrane|synapse part					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00715)|all_lung(284;0.00989)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.201)		UCEC - Uterine corpus endometrioid carcinoma (279;0.042)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-26)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|GBM - Glioblastoma multiforme(114;0.0191)|READ - Rectum adenocarcinoma(331;0.0649)		CCATACAGTGGCTTTTTTTTG	0.343												
TMEM57	55219	broad.mit.edu	37	1	25812245	25812245	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:25812245A>G	uc001bkk.2	+	8	1657	c.1455A>G	c.(1453-1455)GAA>GAG	p.E485E	TMEM57_uc009vru.2_Silent_p.E258E|TMEM57_uc009vrv.2_Silent_p.E127E	NM_018202	NP_060672	Q8N5G2	MACOI_HUMAN	transmembrane protein 57	485						axon|integral to membrane|neuron projection terminus|nuclear membrane|synapse part					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00715)|all_lung(284;0.00989)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.201)		UCEC - Uterine corpus endometrioid carcinoma (279;0.042)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-26)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|GBM - Glioblastoma multiforme(114;0.0191)|READ - Rectum adenocarcinoma(331;0.0649)		AGTTAGAAGAAGCCACTGCTG	0.448												
SEPN1	57190	broad.mit.edu	37	1	26135246	26135246	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:26135246A>G	uc010oer.1	+	7	768	c.713A>G	c.(712-714)AAC>AGC	p.N238S	SEPN1_uc010oes.1_Missense_Mutation_p.N204S	NM_020451	NP_065184	Q9NZV5	SELN_HUMAN	selenoprotein N, 1 isoform 1 precursor	238						endoplasmic reticulum membrane|extracellular region	protein binding			ovary(2)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.00038)|all_lung(284;0.00051)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0421)|OV - Ovarian serous cystadenocarcinoma(117;1.26e-25)|Colorectal(126;3.01e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0143)|READ - Rectum adenocarcinoma(331;0.0649)		CTGTCCAACAACCGCTTCTAT	0.667												
FAM54B	56181	broad.mit.edu	37	1	26156176	26156176	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:26156176A>G	uc001bkq.3	+	6	838	c.628A>G	c.(628-630)AGC>GGC	p.S210G	FAM54B_uc001bkr.3_Silent_p.P173P|FAM54B_uc010oet.1_Missense_Mutation_p.S243G|FAM54B_uc009vrz.2_Missense_Mutation_p.S195G|FAM54B_uc001bks.3_Missense_Mutation_p.S210G|FAM54B_uc001bkt.3_Missense_Mutation_p.S210G|FAM54B_uc001bku.3_Silent_p.P170P|FAM54B_uc001bkv.3_Missense_Mutation_p.S113G	NM_001099625	NP_001093095	Q9H019	FA54B_HUMAN	hypothetical protein LOC56181 isoform a	210										pancreas(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.00038)|all_lung(284;0.00051)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;1.96e-25)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.00095)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0649)		TTGTTCTGCCAGCCCTGAATG	0.512												
C1orf135	79000	broad.mit.edu	37	1	26162053	26162053	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:26162053T>C	uc001bkw.1	-	3	505	c.505A>G	c.(505-507)ACC>GCC	p.T169A		NM_024037	NP_076942	Q9H7T9	CA135_HUMAN	aurora A-binding protein	169											0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00521)|all_lung(284;0.00764)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.117)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0429)|OV - Ovarian serous cystadenocarcinoma(117;3.28e-25)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;1.75e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000787)|BRCA - Breast invasive adenocarcinoma(304;0.00102)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.015)|READ - Rectum adenocarcinoma(331;0.0649)		GCCAGTGGGGTATGACTATCT	0.483												
STMN1	3925	broad.mit.edu	37	1	26228173	26228173	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:26228173A>G	uc001bkz.2	-	4	551	c.187T>C	c.(187-189)TCC>CCC	p.S63P	STMN1_uc010oev.1_Missense_Mutation_p.S63P|STMN1_uc001bla.2_Missense_Mutation_p.S63P|STMN1_uc001blb.2_Missense_Mutation_p.S63P|STMN1_uc001blc.2_Missense_Mutation_p.S63P	NM_203401	NP_981946	P16949	STMN1_HUMAN	stathmin 1 isoform a	63	Potential.				cell differentiation|intracellular signal transduction|microtubule depolymerization|mitotic spindle organization|nervous system development|response to virus	cytoplasm|microtubule	signal transducer activity|tubulin binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000163)|all_lung(284;0.000234)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-25)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.013)|READ - Rectum adenocarcinoma(331;0.0649)		GCTTCATGGGACTGGAAAAAA	0.294												
CATSPER4	378807	broad.mit.edu	37	1	26517331	26517331	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:26517331G>A	uc010oez.1	+	1	213	c.213G>A	c.(211-213)GCG>GCA	p.A71A	CATSPER4_uc010oey.1_5'UTR|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	71	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		CGAACAAAGCGGTAAGGATAG	0.612												
CCDC21	64793	broad.mit.edu	37	1	26582109	26582109	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:26582109A>G	uc001bls.1	+	4	787	c.656A>G	c.(655-657)TAC>TGC	p.Y219C	CCDC21_uc001blr.2_Missense_Mutation_p.Y219C|CCDC21_uc010ofa.1_Missense_Mutation_p.Y168C	NM_022778	NP_073615	Q6P2H3	CEP85_HUMAN	coiled-coil domain containing 21	219						centrosome|nucleolus|spindle pole					0		all_cancers(24;7e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.6e-26)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;9.48e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00917)|READ - Rectum adenocarcinoma(331;0.0649)		AAGGAGTTGTACAGAGTGTTG	0.537												
LIN28A	79727	broad.mit.edu	37	1	26751895	26751895	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:26751895C>T	uc001bmj.2	+	3	444	c.330C>T	c.(328-330)ACC>ACT	p.T110T	LIN28A_uc001bmi.1_RNA	NM_024674	NP_078950	Q9H9Z2	LN28A_HUMAN	lin-28 homolog	110	CSD.				miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing|stem cell maintenance	cytoplasmic mRNA processing body|nucleolus|stress granule	DNA binding|zinc ion binding			central_nervous_system(1)	1						TCCGTGTCACCGGACCTGGTG	0.527												
C1orf172	126695	broad.mit.edu	37	1	27278358	27278358	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:27278358A>G	uc001bni.1	-	2	603	c.514T>C	c.(514-516)TAT>CAT	p.Y172H		NM_152365	NP_689578	Q8NAX2	CA172_HUMAN	hypothetical protein LOC126695	172										large_intestine(1)|ovary(1)	2		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;3.37e-51)|OV - Ovarian serous cystadenocarcinoma(117;2.22e-29)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)		GGGTAGGGATACACAGGGATG	0.652												
WDTC1	23038	broad.mit.edu	37	1	27609836	27609836	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:27609836G>A	uc009vst.2	+	5	722	c.187G>A	c.(187-189)GCC>ACC	p.A63T	WDTC1_uc001bno.2_Missense_Mutation_p.A63T|WDTC1_uc001bnp.1_RNA	NM_015023	NP_055838	Q8N5D0	WDTC1_HUMAN	WD and tetratricopeptide repeats 1	63	WD 1.						protein binding			ovary(1)|central_nervous_system(1)	2		all_cancers(24;3.12e-19)|all_epithelial(13;4.18e-18)|Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.00257)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0443)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;1.02e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000544)|KIRC - Kidney renal clear cell carcinoma(1967;0.00201)|STAD - Stomach adenocarcinoma(196;0.00321)|READ - Rectum adenocarcinoma(331;0.0476)		CAGCTTGCTGGCCTCTGGTTC	0.517												
WASF2	10163	broad.mit.edu	37	1	27744873	27744873	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:27744873G>A	uc001bof.1	-	4	532	c.316C>T	c.(316-318)CAA>TAA	p.Q106*	WASF2_uc010ofl.1_Nonsense_Mutation_p.Q106*	NM_006990	NP_008921	Q9Y6W5	WASF2_HUMAN	WAS protein family, member 2	106					actin cytoskeleton organization|G-protein signaling, coupled to cAMP nucleotide second messenger	actin cytoskeleton|lamellipodium	actin binding			skin(2)|ovary(1)	3		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0446)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.7e-08)|COAD - Colon adenocarcinoma(152;2e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00139)|KIRC - Kidney renal clear cell carcinoma(1967;0.00204)|STAD - Stomach adenocarcinoma(196;0.00325)|READ - Rectum adenocarcinoma(331;0.0481)		TTCTGGTCTTGAATGGTGGAA	0.453												
AHDC1	27245	broad.mit.edu	37	1	27875206	27875206	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:27875206C>T	uc009vsy.2	-	6	4390	c.3421G>A	c.(3421-3423)GTG>ATG	p.V1141M	AHDC1_uc009vsz.1_Missense_Mutation_p.V1141M	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	1141							DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		TCCAGGATCACGTTGGGCTCG	0.577												
C1orf38	9473	broad.mit.edu	37	1	28209163	28209163	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:28209163C>T	uc001bpc.3	+	4	1356	c.1328C>T	c.(1327-1329)GCA>GTA	p.A443V	C1orf38_uc001boz.2_Intron|C1orf38_uc001bpa.2_Intron|C1orf38_uc010ofn.1_Missense_Mutation_p.A247V|C1orf38_uc010ofo.1_Missense_Mutation_p.A314V	NM_001105556	NP_001099026	Q5TEJ8	THMS2_HUMAN	basement membrane-induced gene isoform 3	443	CABIT 2.				cell adhesion|inflammatory response					ovary(1)	1		Colorectal(325;3.46e-05)|all_lung(284;0.000129)|Lung NSC(340;0.000259)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;2.52e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0649)		TACAGCCTGGCAGATCTGACT	0.622												
RCC1	1104	broad.mit.edu	37	1	28862498	28862498	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:28862498C>T	uc001bqg.1	+	7	862	c.777C>T	c.(775-777)GGC>GGT	p.G259G	SNHG3-RCC1_uc001bqa.1_Silent_p.G259G|SNHG3-RCC1_uc001bqb.1_Silent_p.G259G|SNHG3-RCC1_uc001bqc.1_Silent_p.G259G|RCC1_uc001bqe.1_Silent_p.G276G|RCC1_uc001bqf.1_Silent_p.G290G	NM_001269	NP_001260	P18754	RCC1_HUMAN	regulator of chromosome condensation 1 isoform	259	RCC1 5.				cell division|chromosome segregation|G1/S transition of mitotic cell cycle|mitosis|mitotic spindle organization|regulation of mitosis|regulation of S phase of mitotic cell cycle|spindle assembly|viral reproduction	condensed nuclear chromosome|cytoplasm|nuclear chromatin|nuclear membrane|nucleoplasm	histone binding|nucleosomal DNA binding|Ran guanyl-nucleotide exchange factor activity			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000318)|all_lung(284;0.000434)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.00989)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|KIRC - Kidney renal clear cell carcinoma(1967;0.0101)|BRCA - Breast invasive adenocarcinoma(304;0.022)|READ - Rectum adenocarcinoma(331;0.0649)		CCCATGAGGGCCACGTGTACG	0.507												
YTHDF2	51441	broad.mit.edu	37	1	29070470	29070470	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:29070470G>A	uc001brc.2	+	4	2185	c.1688G>A	c.(1687-1689)CGC>CAC	p.R563H	YTHDF2_uc001brd.2_Missense_Mutation_p.R560H|YTHDF2_uc010ofx.1_Missense_Mutation_p.R513H|YTHDF2_uc001bre.2_Missense_Mutation_p.R513H	NM_016258	NP_057342	Q9Y5A9	YTHD2_HUMAN	high glucose-regulated protein 8	563					humoral immune response					ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.000601)|all_lung(284;0.000771)|Breast(348;0.00502)|Renal(390;0.00758)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;8.36e-08)|COAD - Colon adenocarcinoma(152;5.46e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		TATGAGAAACGCCAAGAGGAA	0.398												
PTPRU	10076	broad.mit.edu	37	1	29642617	29642617	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:29642617G>A	uc001bru.2	+	25	3607	c.3497G>A	c.(3496-3498)CGC>CAC	p.R1166H	PTPRU_uc001brv.2_Missense_Mutation_p.R1162H|PTPRU_uc001brw.2_Missense_Mutation_p.R1156H|PTPRU_uc009vtq.2_Missense_Mutation_p.R1162H|PTPRU_uc009vtr.2_Missense_Mutation_p.R1153H	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	1166	Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		GAGATGATCCGCATTGATCCT	0.423												
SDC3	9672	broad.mit.edu	37	1	31351566	31351566	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:31351566T>G	uc001bse.2	-	2	207	c.160A>C	c.(160-162)AAC>CAC	p.N54H	SDC3_uc001bsd.2_5'UTR	NM_014654	NP_055469	O75056	SDC3_HUMAN	syndecan 3	54	Extracellular (Potential).					integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)|Colorectal(325;0.0466)|all_neural(195;0.0966)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)		STAD - Stomach adenocarcinoma(196;0.0197)|READ - Rectum adenocarcinoma(331;0.0649)		CTCTCGAAGTTCTCACTGCGC	0.637												
PUM1	9698	broad.mit.edu	37	1	31532150	31532150	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:31532150C>T	uc001bsi.1	-	2	377	c.264G>A	c.(262-264)CAG>CAA	p.Q88Q	PUM1_uc001bsh.1_Silent_p.Q88Q|PUM1_uc001bsj.1_Silent_p.Q88Q|PUM1_uc010oga.1_Silent_p.Q88Q|PUM1_uc001bsk.1_Silent_p.Q124Q|PUM1_uc010ogb.1_Silent_p.Q124Q	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	88					cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		GCTCACCATGCTGCCTCTGAA	0.542												
SERINC2	347735	broad.mit.edu	37	1	31899570	31899570	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:31899570A>G	uc010ogh.1	+	6	893	c.692A>G	c.(691-693)TAC>TGC	p.Y231C	SERINC2_uc010ogg.1_Missense_Mutation_p.Y228C|SERINC2_uc001bst.2_Missense_Mutation_p.Y227C|SERINC2_uc001bsu.2_Missense_Mutation_p.Y172C|SERINC2_uc001bsv.2_Missense_Mutation_p.Y172C	NM_178865	NP_849196	Q96SA4	SERC2_HUMAN	tumor differentially expressed 2-like	227						integral to membrane					0		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0629)|Breast(348;0.0707)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0541)|READ - Rectum adenocarcinoma(331;0.151)		TTCATGTACTACACTGAGCCC	0.592												
BAI2	576	broad.mit.edu	37	1	32221679	32221679	+	Silent	SNP	G	G	A	rs139265180		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:32221679G>A	uc001btn.2	-	4	1113	c.759C>T	c.(757-759)CCC>CCT	p.P253P	BAI2_uc010ogp.1_Silent_p.P241P|BAI2_uc010ogq.1_Silent_p.P253P|BAI2_uc001bto.2_Silent_p.P253P|BAI2_uc001btq.1_Silent_p.P241P|BAI2_uc010ogr.1_Silent_p.P241P	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	253	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		CTGGGCCCCCGGGCACCAGGG	0.662												
CCDC28B	79140	broad.mit.edu	37	1	32667684	32667684	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:32667684C>T	uc001bul.1	+	2	280	c.148C>T	c.(148-150)CGG>TGG	p.R50W	CCDC28B_uc001buk.2_Missense_Mutation_p.R50W	NM_024296	NP_077272	Q9BUN5	CC28B_HUMAN	coiled-coil domain containing 28B	50											0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				CCCCAAGCAGCGGGCCAAGTT	0.637												
IQCC	55721	broad.mit.edu	37	1	32673020	32673020	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:32673020C>T	uc001bum.2	+	5	785	c.738C>T	c.(736-738)GAC>GAT	p.D246D	IQCC_uc009vua.2_Silent_p.D326D|IQCC_uc010ogz.1_Silent_p.D146D|DCDC2B_uc001bun.2_5'Flank	NM_018134	NP_060604	Q4KMZ1	IQCC_HUMAN	IQ motif containing C isoform 2	246										ovary(4)	4		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				AGGAGGATGACTCCTGTCACA	0.542												
EIF3I	8668	broad.mit.edu	37	1	32694367	32694367	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:32694367C>T	uc001bur.3	+	9	1212	c.679C>T	c.(679-681)CGG>TGG	p.R227W	EIF3I_uc009vuc.2_Missense_Mutation_p.R227W|EIF3I_uc001bus.2_Missense_Mutation_p.R179W	NM_003757	NP_003748	Q13347	EIF3I_HUMAN	eukaryotic translation initiation factor 3,	227						cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)				GAAGACTTTCCGGACAGAACG	0.537												
HDAC1	3065	broad.mit.edu	37	1	32796452	32796452	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:32796452G>A	uc001bvb.1	+	9	985	c.922G>A	c.(922-924)GTT>ATT	p.V308I	HDAC1_uc010ohf.1_Missense_Mutation_p.V279I|HDAC1_uc001bvc.1_Missense_Mutation_p.V64I	NM_004964	NP_004955	Q13547	HDAC1_HUMAN	histone deacetylase 1	308	Histone deacetylase.				anti-apoptosis|blood coagulation|embryonic digit morphogenesis|epidermal cell differentiation|eyelid development in camera-type eye|fungiform papilla formation|hair follicle placode formation|histone H3 deacetylation|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of androgen receptor signaling pathway|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|odontogenesis of dentine-containing tooth|positive regulation of cell proliferation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	cytosol|NuRD complex|Sin3 complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|identical protein binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|RNA polymerase II transcription corepressor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)	3		Breast(348;0.000523)|Lung NSC(340;0.000992)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Lung SC(1967;0.113)		KIRC - Kidney renal clear cell carcinoma(1967;0.138)	Vorinostat(DB02546)	CATTCGTAACGTTGCCCGGTG	0.562												
BSDC1	55108	broad.mit.edu	37	1	32842196	32842196	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:32842196T>C	uc001bvh.3	-	9	870	c.823A>G	c.(823-825)ACT>GCT	p.T275A	BSDC1_uc010ohg.1_Missense_Mutation_p.T292A|BSDC1_uc010ohh.1_Missense_Mutation_p.T219A|BSDC1_uc010ohi.1_Missense_Mutation_p.T180A|BSDC1_uc001bvg.3_RNA|BSDC1_uc001bvj.2_Missense_Mutation_p.T171A|BSDC1_uc001bvi.2_Missense_Mutation_p.T292A	NM_018045	NP_060515	Q9NW68	BSDC1_HUMAN	BSD domain containing 1 isoform b	275							protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				TCTGATGGAGTCACCTCTGCT	0.567												
RBBP4	5928	broad.mit.edu	37	1	33117607	33117607	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:33117607A>G	uc001bvr.2	+	2	268	c.109A>G	c.(109-111)ACC>GCC	p.T37A	ZBTB8OS_uc001bvo.1_5'Flank|ZBTB8OS_uc001bvp.2_5'Flank|ZBTB8OS_uc001bvq.2_5'Flank|RBBP4_uc001bvs.2_Missense_Mutation_p.T36A|RBBP4_uc010ohj.1_5'UTR|RBBP4_uc010ohk.1_Missense_Mutation_p.T2A	NM_005610	NP_005601	Q09028	RBBP4_HUMAN	retinoblastoma binding protein 4 isoform a	37					cell cycle|CenH3-containing nucleosome assembly at centromere|DNA replication|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|ESC/E(Z) complex|NuRD complex|NURF complex|Sin3 complex	histone binding|histone deacetylase binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				TTTGGTGATGACCCATGCTCT	0.448												
RNF19B	127544	broad.mit.edu	37	1	33415365	33415365	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:33415365T>C	uc010oho.1	-	2	646	c.646A>G	c.(646-648)ATT>GTT	p.I216V	RNF19B_uc001bwm.3_Missense_Mutation_p.I216V|RNF19B_uc010ohp.1_Missense_Mutation_p.I216V	NM_153341	NP_699172	Q6ZMZ0	RN19B_HUMAN	ring finger protein 19B isoform a	216	IBR-type.					integral to membrane	ligase activity|protein binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				CCATAGGCAATAACAGCATAA	0.433												
ZSCAN20	7579	broad.mit.edu	37	1	33956657	33956657	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:33956657G>A	uc001bxj.3	+	6	966	c.799G>A	c.(799-801)GAG>AAG	p.E267K	ZSCAN20_uc001bxk.2_Missense_Mutation_p.E213K|ZSCAN20_uc009vui.2_Missense_Mutation_p.E267K	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	267					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				TAATACCTCCGAGAAAGAGCA	0.438												
ZSCAN20	7579	broad.mit.edu	37	1	33956724	33956724	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:33956724A>T	uc001bxj.3	+	6	1033	c.866A>T	c.(865-867)GAT>GTT	p.D289V	ZSCAN20_uc001bxk.2_Missense_Mutation_p.D235V|ZSCAN20_uc009vui.2_Missense_Mutation_p.D289V	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	289					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				AGCACTGCAGATTACAGCCTG	0.478												
ZSCAN20	7579	broad.mit.edu	37	1	33960491	33960491	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:33960491T>C	uc001bxj.3	+	8	2714	c.2547T>C	c.(2545-2547)GCT>GCC	p.A849A	ZSCAN20_uc009vui.2_Silent_p.A848A	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	849					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				AAGAGACAGCTCCTGAACAAC	0.463												
CSMD2	114784	broad.mit.edu	37	1	34383804	34383804	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:34383804T>C	uc001bxn.1	-	5	720	c.691A>G	c.(691-693)ACC>GCC	p.T231A	CSMD2_uc001bxm.1_Missense_Mutation_p.T271A	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	231	CUB 2.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCCAGGATGGTCCATGTGCAG	0.582												
CSMD2	114784	broad.mit.edu	37	1	34383824	34383824	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:34383824T>C	uc001bxn.1	-	5	700	c.671A>G	c.(670-672)AAC>AGC	p.N224S	CSMD2_uc001bxm.1_Missense_Mutation_p.N264S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	224	CUB 2.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTCGGCATTGTTATGGTACTC	0.582												
GJB4	127534	broad.mit.edu	37	1	35226975	35226975	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:35226975G>T	uc001bxv.1	+	2	490	c.120G>T	c.(118-120)GCG>GCT	p.A40A	GJB4_uc001bxw.3_Silent_p.A40A	NM_153212	NP_694944	Q9NTQ9	CXB4_HUMAN	gap junction protein, beta 4	40	Helical; (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity			ovary(2)|central_nervous_system(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				TGGTGGCAGCGGAGGAGGTGT	0.592												
GJB3	2707	broad.mit.edu	37	1	35250706	35250706	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:35250706A>G	uc001bxx.2	+	2	958	c.343A>G	c.(343-345)AAG>GAG	p.K115E	GJB3_uc001bxy.2_Missense_Mutation_p.K115E|GJB3_uc001bxz.3_Missense_Mutation_p.K115E|uc010ohs.1_RNA	NM_024009	NP_076872	O75712	CXB3_HUMAN	connexin 31	115	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				CCAGTGCGCCAAGCTGTACGA	0.602												
GJA4	2701	broad.mit.edu	37	1	35260075	35260075	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:35260075A>G	uc001bya.2	+	2	349	c.261A>G	c.(259-261)ACA>ACG	p.T87T	GJA4_uc009vul.2_Silent_p.T163T|GJA4_uc009vum.1_Silent_p.T87T	NM_002060	NP_002051	P35212	CXA4_HUMAN	connexin 37	87	Helical; (Potential).				cell-cell junction assembly	integral to plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				TCGTCAGCACACCCACCCTGG	0.637												
ZMYM4	9202	broad.mit.edu	37	1	35864507	35864507	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:35864507T>C	uc001byt.2	+	22	3376	c.3296T>C	c.(3295-3297)GTA>GCA	p.V1099A	ZMYM4_uc009vuu.2_Missense_Mutation_p.V1067A|ZMYM4_uc001byu.2_Missense_Mutation_p.V775A|ZMYM4_uc009vuv.2_Missense_Mutation_p.V838A	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	1099					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TCAGAGGCAGTATCTACTCCA	0.403												
CLSPN	63967	broad.mit.edu	37	1	36202565	36202565	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:36202565T>C	uc001bzi.2	-	24	3939	c.3859A>G	c.(3859-3861)ACA>GCA	p.T1287A	CLSPN_uc009vux.2_Missense_Mutation_p.T1223A	NM_022111	NP_071394	Q9HAW4	CLSPN_HUMAN	claspin	1287					activation of protein kinase activity|cell cycle|cellular component disassembly involved in apoptosis|DNA repair|DNA replication|G2/M transition DNA damage checkpoint|mitotic cell cycle DNA replication checkpoint|peptidyl-serine phosphorylation	nucleoplasm	anaphase-promoting complex binding|DNA binding			breast(2)|ovary(2)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)	8		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GGAGAAAGTGTATGAAAGACA	0.448												
EIF2C1	26523	broad.mit.edu	37	1	36358271	36358271	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:36358271A>G	uc001bzl.2	+	3	536	c.323A>G	c.(322-324)AAC>AGC	p.N108S	EIF2C1_uc001bzk.2_Missense_Mutation_p.N33S|EIF2C1_uc009vuy.2_5'Flank	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	108					negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CCCATTGGCAACGAACGGGTA	0.493												
EIF2C1	26523	broad.mit.edu	37	1	36367936	36367936	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:36367936C>T	uc001bzl.2	+	11	1608	c.1395C>T	c.(1393-1395)CTC>CTT	p.L465L	EIF2C1_uc001bzk.2_Silent_p.L390L|EIF2C1_uc009vuy.2_Intron	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	465					negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AAGAGGTGCTCAAGTAAGGAG	0.542												
ADPRHL2	54936	broad.mit.edu	37	1	36557305	36557305	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:36557305G>A	uc001bzt.2	+	3	448	c.395G>A	c.(394-396)TGT>TAT	p.C132Y	ADPRHL2_uc001bzu.2_5'UTR	NM_017825	NP_060295	Q9NX46	ARHL2_HUMAN	ADP-ribosylhydrolase like 2	132						cytoplasm|nucleus	metal ion binding|poly(ADP-ribose) glycohydrolase activity			pancreas(1)	1		Myeloproliferative disorder(586;0.0393)				AACCCCAAATGTCGCGATGTC	0.552												
TRAPPC3	27095	broad.mit.edu	37	1	36602838	36602838	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:36602838C>T	uc001bzx.2	-	5	597	c.509G>A	c.(508-510)CGG>CAG	p.R170Q	TRAPPC3_uc001bzy.2_Missense_Mutation_p.R124Q	NM_014408	NP_055223	O43617	TPPC3_HUMAN	trafficking protein particle complex 3	170						endoplasmic reticulum	guanylate cyclase activity|heme binding			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0393)				GTCCTCAATCCGCCTGATGAA	0.547												
MAP7D1	55700	broad.mit.edu	37	1	36645665	36645665	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:36645665A>G	uc001bzz.2	+	16	2728	c.2512A>G	c.(2512-2514)ACA>GCA	p.T838A	MAP7D1_uc001caa.2_Missense_Mutation_p.T805A|MAP7D1_uc001cab.2_Missense_Mutation_p.T800A|MAP7D1_uc001cac.2_Missense_Mutation_p.T537A|MAP7D1_uc001cad.2_Missense_Mutation_p.T374A	NM_018067	NP_060537	Q3KQU3	MA7D1_HUMAN	MAP7 domain containing 1	838						cytoplasm|spindle				ovary(3)|breast(2)	5		Myeloproliferative disorder(586;0.0393)				CCCGCAGGTCACAGGTAGATC	0.592												
CSF3R	1441	broad.mit.edu	37	1	36940985	36940985	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:36940985G>A	uc001caw.1	-	4	532	c.354C>T	c.(352-354)CGC>CGT	p.R118R	CSF3R_uc001cau.1_5'Flank|CSF3R_uc001cav.1_Silent_p.R118R|CSF3R_uc001cax.1_Silent_p.R118R|CSF3R_uc001cay.1_Silent_p.R118R	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	118	Extracellular (Potential).				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	TACAGCCTGCGCGCAGCTCAA	0.488												
GRIK3	2899	broad.mit.edu	37	1	37319265	37319265	+	Missense_Mutation	SNP	G	G	A	rs142974275	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:37319265G>A	uc001caz.2	-	8	1298	c.1163C>T	c.(1162-1164)ACG>ATG	p.T388M	GRIK3_uc001cba.1_Missense_Mutation_p.T388M	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	388	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	ATCAAAATCCGTCCGCAAGCC	0.547												
SNIP1	79753	broad.mit.edu	37	1	38005863	38005863	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:38005863T>C	uc001cbi.2	-	3	894	c.821A>G	c.(820-822)TAC>TGC	p.Y274C	SNIP1_uc010oid.1_RNA	NM_024700	NP_078976	Q8TAD8	SNIP1_HUMAN	Smad nuclear interacting protein	274					production of miRNAs involved in gene silencing by miRNA	nucleus	protein binding			upper_aerodigestive_tract(1)|lung(1)	2		Myeloproliferative disorder(586;0.0393)				TCGATGTATGTACATGACTGG	0.478												
GNL2	29889	broad.mit.edu	37	1	38056365	38056365	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:38056365A>G	uc001cbk.2	-	4	489	c.326T>C	c.(325-327)GTT>GCT	p.V109A	GNL2_uc010oif.1_5'UTR|GNL2_uc009vve.2_Missense_Mutation_p.V109A	NM_013285	NP_037417	Q13823	NOG2_HUMAN	guanine nucleotide binding protein-like 2	109					ribosome biogenesis	nucleolus	GTP binding|GTPase activity|protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)				CTTCATGACAACTTTGTATGG	0.383												
POU3F1	5453	broad.mit.edu	37	1	38511620	38511620	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:38511620G>A	uc001ccp.1	-	1	831	c.796C>T	c.(796-798)CGC>TGC	p.R266C		NM_002699	NP_002690	Q03052	PO3F1_HUMAN	POU domain, class 3, transcription factor 1	266	POU-specific.				positive regulation of transcription, DNA-dependent		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				AGCTTGATGCGCCGCTGCTTG	0.592												
MACF1	23499	broad.mit.edu	37	1	39765930	39765930	+	Missense_Mutation	SNP	G	G	A	rs140369443	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:39765930G>A	uc010ois.1	+	23	2750	c.2545G>A	c.(2545-2547)GTT>ATT	p.V849I	MACF1_uc001cda.1_Missense_Mutation_p.V757I|MACF1_uc001cdc.1_5'UTR|MACF1_uc009vvq.1_5'UTR|MACF1_uc001cdb.1_5'UTR	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	849					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TGCCAGTCTCGTTGGGAGATC	0.428												
MACF1	23499	broad.mit.edu	37	1	39920622	39920622	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:39920622G>A	uc010oiu.1	+	54	16388	c.16257G>A	c.(16255-16257)ACG>ACA	p.T5419T	MACF1_uc010ois.1_Silent_p.T4917T	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	6875					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GTCTTGAAACGGCCTTGTCAG	0.532												
MACF1	23499	broad.mit.edu	37	1	39950380	39950380	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:39950380A>G	uc010oiu.1	+	63	17669	c.17538A>G	c.(17536-17538)ACA>ACG	p.T5846T	MACF1_uc010ois.1_Silent_p.T5338T|MACF1_uc001cde.1_Silent_p.T252T|MACF1_uc001cdf.1_Silent_p.T221T|MACF1_uc001cdg.2_Silent_p.T166T|MACF1_uc001cdh.2_Silent_p.T129T	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	7296	Ser-rich.|C-terminal tail (By similarity).				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CGGCCTCCACAGGTGCCAAAA	0.498												
PABPC4	8761	broad.mit.edu	37	1	40029377	40029377	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:40029377G>A	uc010oiv.1	-	12	2427	c.1529C>T	c.(1528-1530)GCT>GTT	p.A510V	PABPC4_uc001cdl.2_Missense_Mutation_p.A526V|PABPC4_uc001cdm.2_Missense_Mutation_p.A497V	NM_003819	NP_003810	Q13310	PABP4_HUMAN	poly A binding protein, cytoplasmic 4 isoform 2	510	Poly-Ala.				blood coagulation|RNA catabolic process|RNA processing|translation	cytoplasm|ribonucleoprotein complex	nucleotide binding|poly(A) RNA binding|poly(U) RNA binding|protein binding				0	Lung NSC(20;1.55e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.89e-18)|Epithelial(16;6.17e-17)|all cancers(16;1.18e-15)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			AGCAACAGCAGCGCGTGGCGC	0.567												
PABPC4	8761	broad.mit.edu	37	1	40038101	40038101	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:40038101A>G	uc010oiv.1	-	2	1249	c.351T>C	c.(349-351)GAT>GAC	p.D117D	PABPC4_uc001cdl.2_Silent_p.D117D|PABPC4_uc001cdm.2_Silent_p.D117D	NM_003819	NP_003810	Q13310	PABP4_HUMAN	poly A binding protein, cytoplasmic 4 isoform 2	117	RRM 2.				blood coagulation|RNA catabolic process|RNA processing|translation	cytoplasm|ribonucleoprotein complex	nucleotide binding|poly(A) RNA binding|poly(U) RNA binding|protein binding				0	Lung NSC(20;1.55e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.89e-18)|Epithelial(16;6.17e-17)|all cancers(16;1.18e-15)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CAGAAAAAGTATCATAAAGTG	0.348												
RLF	6018	broad.mit.edu	37	1	40661362	40661362	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:40661362T>C	uc001cfc.3	+	4	564	c.533T>C	c.(532-534)GTT>GCT	p.V178A		NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	178					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			TTGGTTCATGTTACCAAGGAA	0.368												
ZNF684	127396	broad.mit.edu	37	1	41012267	41012267	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:41012267A>C	uc001cft.1	+	5	523	c.272A>C	c.(271-273)AAG>ACG	p.K91T		NM_152373	NP_689586	Q5T5D7	ZN684_HUMAN	zinc finger protein 684	91					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.42e-18)			GAACCAGGGAAGCATCGGGAA	0.358												
SLFNL1	200172	broad.mit.edu	37	1	41486096	41486096	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:41486096C>T	uc001cgm.1	-	2	457	c.237G>A	c.(235-237)GCG>GCA	p.A79A	SLFNL1_uc009vwf.1_Silent_p.A79A|SLFNL1_uc001cgn.1_Silent_p.A79A|SLFNL1_uc009vwg.1_Silent_p.A79A	NM_144990	NP_659427	Q499Z3	SLNL1_HUMAN	schlafen-like 1	79							ATP binding			skin(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Breast(333;0.1)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0393)				TGTGCTCCCGCGCCACCGGCA	0.667												
C1orf210	149466	broad.mit.edu	37	1	43748598	43748598	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:43748598C>T	uc001cit.3	-	3	434	c.200G>A	c.(199-201)CGC>CAC	p.R67H		NM_182517	NP_872323	Q8IVY1	CA210_HUMAN	hypothetical protein LOC149466	67	Cytoplasmic (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AGGCAGTGGGCGGTGCCGGTA	0.597												
TIE1	7075	broad.mit.edu	37	1	43773195	43773195	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:43773195T>C	uc001ciu.2	+	6	944	c.865T>C	c.(865-867)TAT>CAT	p.Y289H	TIE1_uc010okd.1_Missense_Mutation_p.Y289H|TIE1_uc010oke.1_Missense_Mutation_p.Y244H|TIE1_uc009vwq.2_Missense_Mutation_p.Y245H|TIE1_uc010okf.1_5'UTR|TIE1_uc010okg.1_5'UTR|TIE1_uc010okc.1_Missense_Mutation_p.Y289H	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	289	Extracellular (Potential).|EGF-like 2.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCCAGACCCCTATGGCTGCTC	0.607												
TIE1	7075	broad.mit.edu	37	1	43785145	43785145	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:43785145C>T	uc001ciu.2	+	19	3131	c.3052C>T	c.(3052-3054)CGC>TGC	p.R1018C	TIE1_uc010oke.1_Missense_Mutation_p.R973C|TIE1_uc009vwq.2_Missense_Mutation_p.R974C|TIE1_uc010okg.1_Missense_Mutation_p.R663C	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	1018	Cytoplasmic (Potential).|Protein kinase.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TCTCCCTGTGCGCTGGATGGC	0.587												
KIAA0467	23334	broad.mit.edu	37	1	43893400	43893400	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:43893400C>T	uc001cjk.1	+	11	1563	c.1101C>T	c.(1099-1101)ATC>ATT	p.I367I		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	1266						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GAGACCTCATCTTCCGGTGAG	0.577												
IPO13	9670	broad.mit.edu	37	1	44432664	44432664	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:44432664T>C	uc001ckx.2	+	18	3381	c.2586T>C	c.(2584-2586)GGT>GGC	p.G862G	IPO13_uc001cky.2_Silent_p.G80G	NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	862					protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				AGGAAGACGGTCGTATGCTGC	0.612												
ERI3	79033	broad.mit.edu	37	1	44804743	44804743	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:44804743A>G	uc001clt.2	-	3	704	c.463T>C	c.(463-465)TGC>CGC	p.C155R	ERI3_uc010okv.1_Intron|ERI3_uc009vxg.2_Missense_Mutation_p.C155R|ERI3_uc010okw.1_Missense_Mutation_p.C77R|ERI3_uc001clu.2_Missense_Mutation_p.C77R	NM_024066	NP_076971	O43414	ERI3_HUMAN	prion protein interacting protein	155	Exonuclease.					intracellular	exonuclease activity|metal ion binding|nucleic acid binding			ovary(2)|large_intestine(1)	3						GGCTTGTCGCACGTGGCCTCA	0.547												
ERI3	79033	broad.mit.edu	37	1	44804978	44804978	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:44804978T>C	uc001clt.2	-	3	469	c.228A>G	c.(226-228)GGA>GGG	p.G76G	ERI3_uc010okv.1_Intron|ERI3_uc009vxg.2_Silent_p.G76G|ERI3_uc010okw.1_5'UTR|ERI3_uc001clu.2_5'UTR	NM_024066	NP_076971	O43414	ERI3_HUMAN	prion protein interacting protein	76						intracellular	exonuclease activity|metal ion binding|nucleic acid binding			ovary(2)|large_intestine(1)	3						GCATTGAACATCCAGAAGCAT	0.348												
BEST4	266675	broad.mit.edu	37	1	45250930	45250930	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:45250930G>A	uc001cmm.2	-	6	811	c.762C>T	c.(760-762)GGC>GGT	p.G254G		NM_153274	NP_695006	Q8NFU0	BEST4_HUMAN	bestrophin 4	254	Extracellular (Potential).					chloride channel complex|plasma membrane	chloride channel activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CAAACTGGCGGCCAACCAGGG	0.607												
MAST2	23139	broad.mit.edu	37	1	46496683	46496683	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:46496683C>T	uc001cov.2	+	23	2996	c.2713C>T	c.(2713-2715)CGG>TGG	p.R905W	MAST2_uc001cow.2_Missense_Mutation_p.R905W|MAST2_uc001coy.1_Missense_Mutation_p.R579W|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	905					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					TCATAGATTACGGAAGCGGCT	0.587												
TAL1	6886	broad.mit.edu	37	1	47691500	47691500	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:47691500C>T	uc001cqx.2	-	2	638	c.61G>A	c.(61-63)GCG>ACG	p.A21T	TAL1_uc009vyq.2_5'Flank|TAL1_uc001cqy.2_Missense_Mutation_p.A21T|TAL1_uc001cra.1_Intron|TAL1_uc001cqz.1_Intron	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	21					basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						GCCTCGGCCGCGTCCCGTCCC	0.716			T	TRD@|SIL	lymphoblastic leukemia/biphasic							
BEND5	79656	broad.mit.edu	37	1	49201945	49201945	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:49201945T>C	uc001crx.3	-	5	1118	c.1074A>G	c.(1072-1074)CCA>CCG	p.P358P	AGBL4_uc001cru.2_Intron|AGBL4_uc010omw.1_Intron|AGBL4_uc010omx.1_Intron|AGBL4_uc001crv.1_Intron|AGBL4_uc010omy.1_Intron|BEND5_uc001crw.3_Silent_p.P189P	NM_024603	NP_078879	Q7L4P6	BEND5_HUMAN	BEN domain containing 5	358	BEN.									skin(1)	1						GCGAGAGGGGTGGTTTAGGGA	0.458												
FAF1	11124	broad.mit.edu	37	1	51049325	51049325	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:51049325T>C	uc009vyx.1	-	12	1093	c.1030A>G	c.(1030-1032)AGA>GGA	p.R344G	FAF1_uc009vyw.1_RNA|FAF1_uc001cse.1_Missense_Mutation_p.R344G|FAF1_uc010onc.1_Missense_Mutation_p.R102G	NM_007051	NP_008982	Q9UNN5	FAF1_HUMAN	FAS-associated factor 1	344					apoptosis|cytoplasmic sequestering of NF-kappaB|positive regulation of apoptosis|positive regulation of protein complex assembly|proteasomal ubiquitin-dependent protein catabolic process|regulation of protein catabolic process	CD95 death-inducing signaling complex|cytosol|perinuclear region of cytoplasm	heat shock protein binding|NF-kappaB binding|protein kinase binding|protein kinase regulator activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(3;3.18e-11)|all cancers(3;0.00526)		TAACCCTACCTTGAAGAAAAC	0.269												
TTC39A	22996	broad.mit.edu	37	1	51767291	51767291	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:51767291A>G	uc001csl.2	-	12	1219	c.1114T>C	c.(1114-1116)TCC>CCC	p.S372P	TTC39A_uc001csk.2_Missense_Mutation_p.S337P|TTC39A_uc010ond.1_Missense_Mutation_p.S309P|TTC39A_uc010one.1_Missense_Mutation_p.S336P|TTC39A_uc010onf.1_Missense_Mutation_p.S340P|TTC39A_uc001csn.2_Missense_Mutation_p.S371P|TTC39A_uc001cso.1_3'UTR|TTC39A_uc009vyy.1_Missense_Mutation_p.S309P	NM_001080494	NP_001073963	Q5SRH9	TT39A_HUMAN	tetratricopeptide repeat domain 39A isoform 2	372							binding			skin(1)	1						TAGAAGTAGGACATCTTCCAC	0.587												
OSBPL9	114883	broad.mit.edu	37	1	52252277	52252277	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:52252277A>G	uc001cst.2	+	22	2007	c.1988A>G	c.(1987-1989)TAT>TGT	p.Y663C	OSBPL9_uc001css.2_Missense_Mutation_p.Y668C|OSBPL9_uc001csx.2_RNA|OSBPL9_uc009vza.2_Missense_Mutation_p.Y664C|OSBPL9_uc001csu.2_Missense_Mutation_p.Y673C|OSBPL9_uc001csv.2_Missense_Mutation_p.Y498C|OSBPL9_uc001csw.2_Missense_Mutation_p.Y650C|OSBPL9_uc001csy.2_Missense_Mutation_p.Y485C|OSBPL9_uc001csz.2_Missense_Mutation_p.Y485C|OSBPL9_uc001cta.2_Missense_Mutation_p.Y553C|OSBPL9_uc001ctb.2_Missense_Mutation_p.Y448C	NM_024586	NP_078862	Q96SU4	OSBL9_HUMAN	oxysterol binding protein-like 9 isoform e	663					lipid transport		lipid binding			central_nervous_system(1)	1						CAGAACGAGTATGAATCCCGC	0.418												
NRD1	4898	broad.mit.edu	37	1	52277683	52277683	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:52277683A>G	uc001ctc.3	-	17	2288	c.1966T>C	c.(1966-1968)TTT>CTT	p.F656L	NRD1_uc009vzb.2_Missense_Mutation_p.F351L|NRD1_uc001ctd.3_Missense_Mutation_p.F588L|NRD1_uc001cte.2_Missense_Mutation_p.F524L|NRD1_uc001ctf.2_Missense_Mutation_p.F588L|NRD1_uc010ong.1_RNA	NM_002525	NP_002516	O43847	NRDC_HUMAN	nardilysin isoform a	587					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding				0						TTGTATTCAAAAAGAAGCTGA	0.413												
ZCCHC11	23318	broad.mit.edu	37	1	52961105	52961105	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:52961105A>G	uc001ctx.2	-	6	1494	c.1260T>C	c.(1258-1260)CCT>CCC	p.P420P	ZCCHC11_uc001cty.2_Silent_p.P420P|ZCCHC11_uc001ctz.2_Silent_p.P420P|ZCCHC11_uc009vze.1_Silent_p.P420P|ZCCHC11_uc009vzf.1_Silent_p.P179P|ZCCHC11_uc001cub.2_Silent_p.P420P|ZCCHC11_uc001cuc.2_RNA	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	420					miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						TTACCTTGGGAGGAAATTTTA	0.308												
C1orf163	65260	broad.mit.edu	37	1	53153604	53153604	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:53153604G>A	uc001cui.1	-	3	524	c.484C>T	c.(484-486)CCA>TCA	p.P162S		NM_023077	NP_075565	Q96BR5	SELR1_HUMAN	hypothetical protein LOC65260	162	Sel1-like 4.						binding				0						GGAAAGCCTGGGGCACCCTGC	0.542												
SCP2	6342	broad.mit.edu	37	1	53513586	53513586	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:53513586A>G	uc001cur.1	+	15	1646	c.1525A>G	c.(1525-1527)ACT>GCT	p.T509A	SCP2_uc001cus.1_RNA|SCP2_uc010ono.1_Missense_Mutation_p.T428A|SCP2_uc010onp.1_Missense_Mutation_p.T485A|SCP2_uc009vzi.1_Missense_Mutation_p.T465A|SCP2_uc010onq.1_Missense_Mutation_p.T105A|SCP2_uc001cut.1_Missense_Mutation_p.T102A|SCP2_uc001cuu.1_3'UTR	NM_002979	NP_002970	P22307	NLTP_HUMAN	sterol carrier protein 2 isoform 1 proprotein	509	SCP2.				bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|lipid transport	mitochondrion|nucleus|peroxisomal matrix	propanoyl-CoA C-acyltransferase activity|propionyl-CoA C2-trimethyltridecanoyltransferase activity|protein binding|sterol binding			breast(1)	1						GGCTTTAATGACTGGTAAAAT	0.443												
SLC1A7	6512	broad.mit.edu	37	1	53554604	53554604	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:53554604G>A	uc001cuy.2	-	10	1577	c.1409C>T	c.(1408-1410)GCG>GTG	p.A470V	SLC1A7_uc001cux.2_Missense_Mutation_p.A123V	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	470	Helical; (Potential).					integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	CATGATCCCCGCTGCCAGCGC	0.612												
CPT2	1376	broad.mit.edu	37	1	53675834	53675834	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:53675834T>C	uc001cvb.3	+	4	1003	c.488T>C	c.(487-489)CTG>CCG	p.L163P		NM_000098	NP_000089	P23786	CPT2_HUMAN	carnitine O-palmitoyltransferase precursor	163	Mitochondrial matrix (By similarity).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	mitochondrial inner membrane	carnitine O-palmitoyltransferase activity				0					L-Carnitine(DB00583)|Perhexiline(DB01074)	ATCCGGTTTCTGAAGACACTC	0.473												
DMRTB1	63948	broad.mit.edu	37	1	53930411	53930411	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:53930411C>T	uc001cvq.1	+	3	907	c.852C>T	c.(850-852)CTC>CTT	p.L284L		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	284	Pro-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						CCCAGTTCCTCCCGCCAGGCT	0.522												
GLIS1	148979	broad.mit.edu	37	1	53974836	53974836	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:53974836C>T	uc001cvr.1	-	9	2229	c.1662G>A	c.(1660-1662)CGG>CGA	p.R554R		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	554					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						AGCCATTGGGCCGCAGGGGGT	0.532												
DIO1	1733	broad.mit.edu	37	1	54370370	54370370	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:54370370T>C	uc010onx.1	+	2	392	c.369T>C	c.(367-369)AGT>AGC	p.S123S	DIO1_uc010onw.1_Silent_p.S59S|DIO1_uc009vzl.2_Intron|DIO1_uc001cwb.2_Intron|DIO1_uc010ony.1_Silent_p.S123S|DIO1_uc001cwd.2_RNA|DIO1_uc001cwe.2_Intron|DIO1_uc001cwf.2_RNA|DIO1_uc001cwg.2_RNA	NM_000792	NP_000783	P49895	IOD1_HUMAN	deiodinase, iodothyronine, type I isoform a	123					hormone biosynthetic process|thyroid hormone generation	endoplasmic reticulum membrane|integral to membrane|plasma membrane	selenium binding|thyroxine 5'-deiodinase activity				0						ATTTTGGAAGTTGTACCTGAC	0.383												
ACOT11	26027	broad.mit.edu	37	1	55065067	55065067	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:55065067T>C	uc001cxm.1	+	8	945	c.863T>C	c.(862-864)GTG>GCG	p.V288A	ACOT11_uc001cxj.1_Missense_Mutation_p.V166A|ACOT11_uc001cxl.1_Missense_Mutation_p.V288A	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	288	Acyl coenzyme A hydrolase 2.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						AAAGCCATCGTGAACAATGCC	0.592												
ACOT11	26027	broad.mit.edu	37	1	55069590	55069590	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:55069590C>T	uc001cxm.1	+	11	1214	c.1132C>T	c.(1132-1134)CCC>TCC	p.P378S	ACOT11_uc001cxj.1_Missense_Mutation_p.P256S|ACOT11_uc001cxl.1_Missense_Mutation_p.P378S	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	378	START.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						CCTCTCCGTCCCCTGGGACCC	0.572												
C1orf175	374977	broad.mit.edu	37	1	55175638	55175638	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:55175638T>C	uc010ooe.1	+	24	4074	c.3750T>C	c.(3748-3750)CAT>CAC	p.H1250H	C1orf175_uc001cxq.2_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.H768H|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Silent_p.H451H	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1250						integral to membrane	binding				0						ACTTGAGACATGACCCAGAAG	0.532												
USP24	23358	broad.mit.edu	37	1	55624619	55624619	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:55624619G>A	uc001cyg.3	-	9	823	c.823C>T	c.(823-825)CGA>TGA	p.R275*		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	387					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						ATATCTAGTCGAAGGTCATCC	0.393												
C8B	732	broad.mit.edu	37	1	57415420	57415420	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:57415420T>G	uc001cyp.2	-	6	739	c.672A>C	c.(670-672)CAA>CAC	p.Q224H	C8B_uc010oon.1_Missense_Mutation_p.Q162H|C8B_uc010ooo.1_Missense_Mutation_p.Q172H	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	224	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						CGTATTTGCCTTGGGTCTAAA	0.279												
C8B	732	broad.mit.edu	37	1	57425755	57425755	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:57425755T>C	uc001cyp.2	-	2	254	c.187A>G	c.(187-189)ATT>GTT	p.I63V	C8B_uc010oon.1_5'UTR|C8B_uc010ooo.1_Missense_Mutation_p.I11V	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	63					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TCACAATCAATGGGCATCAGG	0.498												
L1TD1	54596	broad.mit.edu	37	1	62676144	62676144	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:62676144T>C	uc001dae.3	+	4	2000	c.1698T>C	c.(1696-1698)CAT>CAC	p.H566H		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	566										ovary(1)|skin(1)	2						AGATGAGTCATGATGAGCATA	0.428												
DOCK7	85440	broad.mit.edu	37	1	62970361	62970361	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:62970361T>C	uc001daq.2	-	37	4711	c.4677A>G	c.(4675-4677)ATA>ATG	p.I1559M	DOCK7_uc001dan.2_Missense_Mutation_p.I1420M|DOCK7_uc001dao.2_Missense_Mutation_p.I1420M|DOCK7_uc001dap.2_Missense_Mutation_p.I1537M|DOCK7_uc001dam.2_Missense_Mutation_p.I739M|DOCK7_uc010oov.1_Missense_Mutation_p.I298M	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	1568					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						CGTGTGACCGTATTGTACCGA	0.403												
CACHD1	57685	broad.mit.edu	37	1	65147750	65147750	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:65147750C>T	uc001dbo.1	+	26	3499	c.3394C>T	c.(3394-3396)CGC>TGC	p.R1132C	CACHD1_uc001dbp.1_Missense_Mutation_p.R887C|CACHD1_uc001dbq.1_Missense_Mutation_p.R887C|CACHD1_uc010opa.1_Missense_Mutation_p.R376C	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	1183	Cytoplasmic (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						AGAAAGAAGGCGCCGCTACTG	0.493												
RAVER2	55225	broad.mit.edu	37	1	65243402	65243402	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:65243402A>G	uc001dbs.1	+	3	491	c.413A>G	c.(412-414)CAG>CGG	p.Q138R	RAVER2_uc001dbt.1_Missense_Mutation_p.Q17R|RAVER2_uc010opb.1_Missense_Mutation_p.Q17R	NM_018211	NP_060681	Q9HCJ3	RAVR2_HUMAN	ribonucleoprotein, PTB-binding 2	138	RRM 1.					cytoplasm|nucleus	nucleotide binding|RNA binding			large_intestine(1)	1						GTCCAGCTTCAGCCAACAGAT	0.378												
DNAJC6	9829	broad.mit.edu	37	1	65830470	65830470	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:65830470T>C	uc001dcd.1	+	2	337	c.173_splice	c.e2+2	p.S58_splice	DNAJC6_uc001dcc.1_Splice_Site_p.S89_splice|DNAJC6_uc010opc.1_Splice_Site_p.S45_splice|DNAJC6_uc001dce.1_Splice_Site_p.S115_splice	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6						cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						TGTGACCAGGTACGCACATTC	0.453												
LEPR	3953	broad.mit.edu	37	1	66067119	66067119	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:66067119A>G	uc001dci.2	+	9	1241	c.1039A>G	c.(1039-1041)AAT>GAT	p.N347D	LEPR_uc001dcg.2_Missense_Mutation_p.N347D|LEPR_uc001dch.2_Missense_Mutation_p.N347D|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.N347D|LEPR_uc001dck.2_Missense_Mutation_p.N347D	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	347	Extracellular (Potential).|Ig-like.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TGTTGGGTCTAATGTTTCTTT	0.343												
SGIP1	84251	broad.mit.edu	37	1	67105497	67105497	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:67105497A>T	uc001dcr.2	+	5	426	c.209A>T	c.(208-210)GAA>GTA	p.E70V		NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	70					positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						TTTTATGCGGAAATTGATTGG	0.294												
SGIP1	84251	broad.mit.edu	37	1	67185012	67185012	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:67185012G>A	uc001dcr.2	+	19	1883	c.1666G>A	c.(1666-1668)GCT>ACT	p.A556T	SGIP1_uc010opd.1_Missense_Mutation_p.A156T|SGIP1_uc001dcs.2_Missense_Mutation_p.A156T|SGIP1_uc001dct.2_Missense_Mutation_p.A158T|SGIP1_uc009wat.2_Missense_Mutation_p.A350T|SGIP1_uc001dcu.2_Missense_Mutation_p.A61T	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	556					positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						AACCATGGGAGCTCAGGACAC	0.423												
WDR78	79819	broad.mit.edu	37	1	67337080	67337080	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:67337080A>T	uc001dcx.2	-	6	969	c.913T>A	c.(913-915)TGT>AGT	p.C305S	WDR78_uc001dcy.2_Missense_Mutation_p.C305S|WDR78_uc001dcz.2_Missense_Mutation_p.C305S|WDR78_uc009waw.2_Missense_Mutation_p.C51S|WDR78_uc009wax.2_RNA	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	305										ovary(2)	2						ATTTTATCACATTGAACATCT	0.308												
GNG12	55970	broad.mit.edu	37	1	68171216	68171216	+	Missense_Mutation	SNP	T	T	C	rs139638442	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:68171216T>C	uc001dea.1	-	4	329	c.137A>G	c.(136-138)CAT>CGT	p.H46R		NM_018841	NP_061329	Q9UBI6	GBG12_HUMAN	G-protein gamma-12 subunit precursor	46					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	heterotrimeric G-protein complex	signal transducer activity				0						ACTCCTGGCATGTTCCTCACA	0.393												
GNG12	55970	broad.mit.edu	37	1	68171242	68171242	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:68171242C>T	uc001dea.1	-	4	303	c.111G>A	c.(109-111)GCG>GCA	p.A37A		NM_018841	NP_061329	Q9UBI6	GBG12_HUMAN	G-protein gamma-12 subunit precursor	37					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	heterotrimeric G-protein complex	signal transducer activity				0						ACATGAGGTCCGCTGATGCCT	0.368												
WLS	79971	broad.mit.edu	37	1	68564378	68564378	+	Nonsense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:68564378A>T	uc001dee.2	-	12	1840	c.1569T>A	c.(1567-1569)TAT>TAA	p.Y523*	uc001deb.1_RNA|uc001dec.1_RNA	NM_001002292	NP_001002292	Q5T9L3	WLS_HUMAN	G protein-coupled receptor 177 isoform 2	Error:Variant_position_missing_in_Q5T9L3_after_alignment					multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Wnt receptor signaling pathway	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	signal transducer activity				0						acaattcttgataaagttccg	0												
DEPDC1	55635	broad.mit.edu	37	1	68949753	68949753	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:68949753T>C	uc001dem.3	-	7	907	c.790A>G	c.(790-792)AAT>GAT	p.N264D	DEPDC1_uc001dej.3_5'Flank|DEPDC1_uc001dek.3_RNA|DEPDC1_uc001del.3_Missense_Mutation_p.N264D	NM_001114120	NP_001107592	Q5TB30	DEP1A_HUMAN	DEP domain containing 1 isoform a	264					intracellular signal transduction|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	GTPase activator activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(397;7.21e-36)		GTTGGATTATTCATATCATTG	0.274												
TNNI3K	51086	broad.mit.edu	37	1	74957869	74957869	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:74957869G>A	uc001dgf.1	+	23	2321	c.2270G>A	c.(2269-2271)CGG>CAG	p.R757Q	TNNI3K_uc001dge.1_Missense_Mutation_p.R858Q	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	757						cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						GGACCTGGCCGGAGTCATGTG	0.488												
C1orf173	127254	broad.mit.edu	37	1	75108709	75108709	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:75108709A>G	uc001dgg.2	-	4	534	c.315_splice	c.e4+1	p.K105_splice		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254											ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						ATAACTCCTTACCTTAAACCT	0.338												
CRYZ	1429	broad.mit.edu	37	1	75188918	75188918	+	Missense_Mutation	SNP	C	C	T	rs138254201	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:75188918C>T	uc001dgk.2	-	4	653	c.148G>A	c.(148-150)GTG>ATG	p.V50M	CRYZ_uc001dgj.2_Missense_Mutation_p.V50M|CRYZ_uc001dgl.2_Missense_Mutation_p.V50M|CRYZ_uc001dgm.2_Translation_Start_Site	NM_001130042	NP_001123514	Q08257	QOR_HUMAN	crystallin, zeta isoform a	50					protein homotetramerization|visual perception|xenobiotic catabolic process	cytosol|Golgi apparatus	mRNA 3'-UTR binding|NADPH binding|NADPH:quinone reductase activity|zinc ion binding				0					Dicumarol(DB00266)	TATGTCTCCACGGGGTTGACA	0.393												
LHX8	431707	broad.mit.edu	37	1	75606712	75606712	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:75606712G>A	uc001dgo.2	+	5	974	c.310G>A	c.(310-312)GTT>ATT	p.V104I	LHX8_uc001dgq.2_Missense_Mutation_p.V43I	NM_001001933	NP_001001933	Q68G74	LHX8_HUMAN	LIM homeobox 8	104	LIM zinc-binding 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CTCCTGCAGTGTTTGCAGAAC	0.398												
RABGGTB	5876	broad.mit.edu	37	1	76256992	76256992	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:76256992T>C	uc001dgy.1	+	5	509	c.438T>C	c.(436-438)TCT>TCC	p.S146S	RABGGTB_uc009wbt.1_RNA|RABGGTB_uc001dha.1_Silent_p.S100S|RABGGTB_uc001dhc.1_5'Flank	NM_004582	NP_004573	P53611	PGTB2_HUMAN	RAB geranylgeranyltransferase, beta subunit	146	PFTB 3.				protein modification process|visual perception		metal ion binding|protein binding|Rab geranylgeranyltransferase activity			ovary(1)	1						CAAGATTCTCTTTTTGTGCGG	0.318												
PIGK	10026	broad.mit.edu	37	1	77620132	77620132	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:77620132A>G	uc001dhk.2	-	9	1031	c.986_splice	c.e9+1	p.S329_splice	PIGK_uc010orj.1_Splice_Site_p.S253_splice|PIGK_uc009wbx.2_Splice_Site_p.S235_splice|PIGK_uc001dhl.1_Missense_Mutation_p.Y330H	NM_005482	NP_005473	Q92643	GPI8_HUMAN	phosphatidylinositol glycan anchor biosynthesis,						attachment of GPI anchor to protein|C-terminal protein lipidation|protein thiol-disulfide exchange|proteolysis	GPI-anchor transamidase complex	cysteine-type endopeptidase activity|GPI-anchor transamidase activity|protein binding			ovary(2)|pancreas(1)	3						TAAGATGAATACCTGCTTTCC	0.303												
PIGK	10026	broad.mit.edu	37	1	77629529	77629529	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:77629529A>G	uc001dhk.2	-	6	629	c.584_splice	c.e6+1	p.R195_splice	PIGK_uc010orj.1_Splice_Site_p.R119_splice|PIGK_uc009wbx.2_Splice_Site_p.R101_splice|PIGK_uc001dhl.1_Splice_Site_p.R195_splice	NM_005482	NP_005473	Q92643	GPI8_HUMAN	phosphatidylinositol glycan anchor biosynthesis,						attachment of GPI anchor to protein|C-terminal protein lipidation|protein thiol-disulfide exchange|proteolysis	GPI-anchor transamidase complex	cysteine-type endopeptidase activity|GPI-anchor transamidase activity|protein binding			ovary(2)|pancreas(1)	3						TTTGCTAATTACCGTCTTTTC	0.294												
AK5	26289	broad.mit.edu	37	1	77752673	77752673	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:77752673A>G	uc001dhn.2	+	2	365	c.108A>G	c.(106-108)GAA>GAG	p.E36E	AK5_uc001dho.2_Silent_p.E10E|AK5_uc001dhm.1_Silent_p.E36E	NM_174858	NP_777283	Q9Y6K8	KAD5_HUMAN	adenylate kinase 5 isoform 1	36					ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	adenylate kinase activity|ATP binding|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			skin(1)	1						ATCCAGTAGAATACTTGGAAA	0.368												
FAM73A	374986	broad.mit.edu	37	1	78326981	78326981	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:78326981A>G	uc001dhx.2	+	12	1380	c.1348A>G	c.(1348-1350)ACT>GCT	p.T450A	FAM73A_uc010ork.1_Missense_Mutation_p.T450A|FAM73A_uc010orl.1_Missense_Mutation_p.T412A|FAM73A_uc001dhy.1_3'UTR	NM_198549	NP_940951	Q8NAN2	FA73A_HUMAN	hypothetical protein LOC374986	450						integral to membrane				ovary(1)	1				Colorectal(170;0.226)		CTGGGGTAGTACTGAAATGGA	0.313												
FAM73A	374986	broad.mit.edu	37	1	78329681	78329681	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:78329681A>G	uc001dhx.2	+	13	1509	c.1477A>G	c.(1477-1479)AAT>GAT	p.N493D	FAM73A_uc010ork.1_Missense_Mutation_p.N493D|FAM73A_uc010orl.1_Missense_Mutation_p.N455D	NM_198549	NP_940951	Q8NAN2	FA73A_HUMAN	hypothetical protein LOC374986	493						integral to membrane				ovary(1)	1				Colorectal(170;0.226)		TGTAGTAAATAATCGATGGCT	0.294												
LPHN2	23266	broad.mit.edu	37	1	82372891	82372891	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:82372891A>T	uc001dit.3	+	4	444	c.263A>T	c.(262-264)GAT>GTT	p.D88V	LPHN2_uc001dis.2_Missense_Mutation_p.D88V|LPHN2_uc001diu.2_Missense_Mutation_p.D88V|LPHN2_uc001div.2_Missense_Mutation_p.D88V|LPHN2_uc009wcd.2_Missense_Mutation_p.D88V	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	88	Extracellular (Potential).|SUEL-type lectin.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		TACCTCCCCGATGCCTTCAAA	0.383												
DNASE2B	58511	broad.mit.edu	37	1	84864332	84864332	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:84864332A>G	uc001djt.1	+	1	118	c.85A>G	c.(85-87)ACA>GCA	p.T29A	UOX_uc009wcg.2_5'Flank	NM_021233	NP_067056	Q8WZ79	DNS2B_HUMAN	deoxyribonuclease II beta isoform 1 precursor	29					DNA metabolic process	lysosome	deoxyribonuclease II activity				0				all cancers(265;0.00303)|Epithelial(280;0.0112)|OV - Ovarian serous cystadenocarcinoma(397;0.0808)		GGGGGCAGCAACAATTTCATG	0.468								Direct_reversal_of_damage				
SSX2IP	117178	broad.mit.edu	37	1	85130189	85130189	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:85130189T>C	uc001dkh.2	-	7	859	c.584A>G	c.(583-585)AAT>AGT	p.N195S	SSX2IP_uc001dkf.2_Missense_Mutation_p.N168S|SSX2IP_uc001dkg.2_RNA|SSX2IP_uc010orz.1_Missense_Mutation_p.N168S|SSX2IP_uc001dki.2_Missense_Mutation_p.N195S|SSX2IP_uc010osa.1_Missense_Mutation_p.N168S|SSX2IP_uc001dkj.2_Missense_Mutation_p.N195S|SSX2IP_uc009wci.2_Intron|SSX2IP_uc001dkk.1_Missense_Mutation_p.N191S	NM_014021	NP_054740	Q9Y2D8	ADIP_HUMAN	synovial sarcoma, X breakpoint 2 interacting	195	Potential.				cell adhesion	nucleus|protein complex				ovary(2)	2				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		CATATCATGATTATACTGAGT	0.323												
MCOLN2	255231	broad.mit.edu	37	1	85424273	85424273	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:85424273T>C	uc001dkm.2	-	3	591	c.350A>G	c.(349-351)TAC>TGC	p.Y117C	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	117						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		ACTGCAGCTGTAGTCATCTTC	0.368												
MCOLN2	255231	broad.mit.edu	37	1	85431242	85431242	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:85431242A>G	uc001dkm.2	-	2	468	c.227T>C	c.(226-228)GTC>GCC	p.V76A	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	76						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		CTGTGTGGTGACCATGACTAT	0.393												
WDR63	126820	broad.mit.edu	37	1	85598648	85598648	+	Silent	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:85598648C>G	uc001dkt.2	+	23	2834	c.2643C>G	c.(2641-2643)GTC>GTG	p.V881V	WDR63_uc009wcl.2_Silent_p.V842V	NM_145172	NP_660155	Q8IWG1	WDR63_HUMAN	WD repeat domain 63	881										upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				all cancers(265;0.00391)|Epithelial(280;0.00922)|Colorectal(170;0.166)		TAATCAAAGTCACAGAGAAGG	0.398												
COL24A1	255631	broad.mit.edu	37	1	86591117	86591117	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:86591117A>G	uc001dlj.2	-	3	944	c.902T>C	c.(901-903)GTG>GCG	p.V301A	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Missense_Mutation_p.V301A	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	301					cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TCTTTTATACACGGTTTCAGA	0.398												
COL24A1	255631	broad.mit.edu	37	1	86591185	86591185	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:86591185T>C	uc001dlj.2	-	3	876	c.834A>G	c.(832-834)GTA>GTG	p.V278V	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Silent_p.V278V	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	278					cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		CCTCTGACAGTACTTTTTCAG	0.378												
CLCA2	9635	broad.mit.edu	37	1	86921029	86921029	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:86921029C>T	uc001dlr.3	+	14	2813	c.2651C>T	c.(2650-2652)GCG>GTG	p.A884V		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	884	Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		ATTGCCCAGGCGCCTCTGTTT	0.418												
CCBL2	56267	broad.mit.edu	37	1	89408756	89408756	+	Missense_Mutation	SNP	C	C	T	rs145574653	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:89408756C>T	uc001dmp.2	-	13	1611	c.1234G>A	c.(1234-1236)GTT>ATT	p.V412I	CCBL2_uc001dmq.2_Missense_Mutation_p.V378I|CCBL2_uc001dmr.2_Missense_Mutation_p.V248I	NM_001008661	NP_001008661	Q6YP21	KAT3_HUMAN	kynurenine aminotransferase III isoform 1	412					biosynthetic process|kynurenine metabolic process|tryptophan catabolic process		cysteine-S-conjugate beta-lyase activity|kynurenine-glyoxylate transaminase activity|kynurenine-oxoglutarate transaminase activity|pyridoxal phosphate binding			ovary(1)	1		Lung NSC(277;0.123)		all cancers(265;0.0117)|Epithelial(280;0.0341)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	AATGCTGAAACGGGGATGGCT	0.318												
GBP3	2635	broad.mit.edu	37	1	89479832	89479832	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:89479832A>G	uc001dmt.2	-	5	764	c.559T>C	c.(559-561)TTG>CTG	p.L187L	GBP3_uc010oss.1_Silent_p.L108L|GBP3_uc001dmu.2_Silent_p.L53L|GBP3_uc001dmv.2_RNA	NM_018284	NP_060754	Q9H0R5	GBP3_HUMAN	guanylate binding protein 3	187						integral to membrane	GTP binding|GTPase activity			ovary(1)|pancreas(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0103)|Epithelial(280;0.0293)		TCTGCTTCCAAGTCCAGGGAG	0.458												
GBP6	163351	broad.mit.edu	37	1	89848299	89848299	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:89848299T>G	uc001dnf.2	+	8	1503	c.1229T>G	c.(1228-1230)CTC>CGC	p.L410R	GBP6_uc010ost.1_Missense_Mutation_p.L280R	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	410							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		CAGGCTAAACTCAATGAGCTC	0.433												
LRRC8B	23507	broad.mit.edu	37	1	90058418	90058418	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:90058418A>G	uc001dni.2	+	8	2735	c.2228A>G	c.(2227-2229)CAT>CGT	p.H743R	LRRC8B_uc001dnh.2_Missense_Mutation_p.H743R|LRRC8B_uc001dnj.2_Missense_Mutation_p.H743R	NM_001134476	NP_001127948	Q6P9F7	LRC8B_HUMAN	leucine rich repeat containing 8 family, member	743	LRR 12.					integral to membrane				ovary(2)	2		all_lung(203;0.17)		all cancers(265;0.00515)|Epithelial(280;0.0241)		TTGTCCCCTCATGTGGGTGAG	0.443												
ZNF326	284695	broad.mit.edu	37	1	90493124	90493124	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:90493124T>C	uc001dnq.2	+	12	1752	c.1613T>C	c.(1612-1614)GTA>GCA	p.V538A	ZNF326_uc009wda.1_Missense_Mutation_p.V449A|ZNF326_uc001dnr.2_Missense_Mutation_p.V332A	NM_182976	NP_892021	Q5BKZ1	ZN326_HUMAN	zinc finger protein 326 isoform 1	538	Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	DNA binding			ovary(1)	1		all_lung(203;0.0116)|Lung NSC(277;0.0417)		all cancers(265;0.00728)|Epithelial(280;0.0265)		atacagggagtaggggaagga	0.04												
ZNF644	84146	broad.mit.edu	37	1	91405701	91405701	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:91405701T>C	uc001dnw.2	-	3	1352	c.1210A>G	c.(1210-1212)ACC>GCC	p.T404A	ZNF644_uc001dnv.2_Intron|ZNF644_uc001dnx.2_Intron|ZNF644_uc001dny.1_Missense_Mutation_p.T404A	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	404					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		GGCTCTTCGGTACTGAAAGTA	0.398												
ZNF644	84146	broad.mit.edu	37	1	91406703	91406703	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:91406703T>C	uc001dnw.2	-	3	350	c.208A>G	c.(208-210)AAT>GAT	p.N70D	ZNF644_uc001dnv.2_Intron|ZNF644_uc001dnx.2_Intron|ZNF644_uc001dny.1_Missense_Mutation_p.N70D	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	70					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		GTCAACGTATTATTTTTCTGA	0.393												
CDC7	8317	broad.mit.edu	37	1	91977451	91977451	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:91977451C>T	uc001doe.2	+	6	708	c.543C>T	c.(541-543)AGC>AGT	p.S181S	CDC7_uc001dof.2_Silent_p.S181S|CDC7_uc010osw.1_Silent_p.S153S|CDC7_uc009wdc.2_Silent_p.S181S|CDC7_uc009wdd.2_5'Flank	NM_003503	NP_003494	O00311	CDC7_HUMAN	cell division cycle 7	181	Protein kinase.				cell cycle checkpoint|cell division|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|positive regulation of cell proliferation|regulation of S phase	cytoplasm|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	5		all_lung(203;0.0165)|Lung NSC(277;0.0562)		all cancers(265;0.00108)|Epithelial(280;0.0184)|KIRC - Kidney renal clear cell carcinoma(1967;0.124)		TTAAGCCCAGCAATTTTTTAT	0.289												
GLMN	11146	broad.mit.edu	37	1	92728468	92728468	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:92728468T>C	uc001dor.2	-	16	1540	c.1425A>G	c.(1423-1425)TTA>TTG	p.L475L	GLMN_uc009wdg.2_RNA|GLMN_uc001dos.2_Silent_p.L461L	NM_053274	NP_444504	Q92990	GLMN_HUMAN	glomulin	475					muscle cell differentiation|negative regulation of T cell proliferation|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of phosphorylation|regulation of gene expression, epigenetic|vasculogenesis	intracellular	hepatocyte growth factor receptor binding			skin(1)	1		all_lung(203;0.00827)|Lung NSC(277;0.0295)		all cancers(265;0.00702)|GBM - Glioblastoma multiforme(16;0.0381)|Epithelial(280;0.0989)		TCAATAAATTTAATGAAGCCA	0.264									Multiple_Glomus_Tumors_(of_the_Skin)_Familial			
CCDC18	343099	broad.mit.edu	37	1	93705385	93705385	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:93705385A>G	uc001dpq.2	+	21	3435	c.3267A>G	c.(3265-3267)GTA>GTG	p.V1089V	CCDC18_uc009wdl.1_Silent_p.V606V	NM_206886	NP_996769	Q5T9S5	CCD18_HUMAN	sarcoma antigen NY-SAR-41	970	Potential.									ovary(2)|breast(2)|pancreas(1)	5		all_lung(203;0.00196)|Lung NSC(277;0.00903)|Melanoma(281;0.099)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00166)|GBM - Glioblastoma multiforme(16;0.00551)|Epithelial(280;0.0967)		TGAGAGATGTACTACAGAAGG	0.343												
ABCA4	24	broad.mit.edu	37	1	94544999	94544999	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:94544999A>G	uc001dqh.2	-	9	1222	c.1118T>C	c.(1117-1119)TTG>TCG	p.L373S	ABCA4_uc010otn.1_Missense_Mutation_p.L373S	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	373	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GCTCTGGATCAATGCATTACA	0.443												
ABCD3	5825	broad.mit.edu	37	1	94941258	94941258	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:94941258A>G	uc001dqn.3	+	7	694	c.592A>G	c.(592-594)AAC>GAC	p.N198D	ABCD3_uc001dqm.3_Missense_Mutation_p.N198D|ABCD3_uc010oto.1_Missense_Mutation_p.N222D|ABCD3_uc010otp.1_Missense_Mutation_p.N125D|ABCD3_uc009wdr.2_Missense_Mutation_p.N198D	NM_002858	NP_002849	P28288	ABCD3_HUMAN	ATP-binding cassette, sub-family D, member 3	198	ABC transmembrane type-1.|Interaction with PEX19.				peroxisomal long-chain fatty acid import|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(1)	1		all_lung(203;0.000434)|Lung NSC(277;0.0019)		all cancers(265;0.0261)|Epithelial(280;0.165)		AAAATTTTGTAACAGTGTAGT	0.294												
ABCD3	5825	broad.mit.edu	37	1	94980753	94980753	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:94980753C>T	uc001dqn.3	+	22	1999	c.1897C>T	c.(1897-1899)CAT>TAT	p.H633Y	ABCD3_uc010oto.1_Missense_Mutation_p.H657Y|ABCD3_uc010otp.1_Missense_Mutation_p.H560Y|ABCD3_uc009wdr.2_Missense_Mutation_p.H523Y|ABCD3_uc001dqo.3_Missense_Mutation_p.H321Y	NM_002858	NP_002849	P28288	ABCD3_HUMAN	ATP-binding cassette, sub-family D, member 3	633	ABC transporter.			VGITLFTVSHRKSLWKHHE -> GWHHSLHLCLIGNLFGNI MR (in Ref. 3; CAA58470).	peroxisomal long-chain fatty acid import|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(1)	1		all_lung(203;0.000434)|Lung NSC(277;0.0019)		all cancers(265;0.0261)|Epithelial(280;0.165)		TTGGAAACATCATGAGGTTTG	0.289												
RWDD3	25950	broad.mit.edu	37	1	95709937	95709937	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:95709937A>G	uc009wdu.2	+	2	332	c.256A>G	c.(256-258)AAT>GAT	p.N86D	RWDD3_uc001drd.3_3'UTR|RWDD3_uc010oty.1_Missense_Mutation_p.N71D|RWDD3_uc009wdt.2_Missense_Mutation_p.N86D|RWDD3_uc001drf.3_Missense_Mutation_p.N86D|RWDD3_uc001drh.3_Missense_Mutation_p.N71D|RWDD3_uc009wdv.2_Intron|RWDD3_uc001drg.3_RNA|RWDD3_uc001dri.3_Missense_Mutation_p.N86D	NM_015485	NP_056300	Q9Y3V2	RWDD3_HUMAN	RWD domain containing 3 isoform a	86	RWD.					cytoplasm|nucleus	protein binding			ovary(1)	1		all_epithelial(167;5.99e-05)|all_lung(203;0.00168)|Lung NSC(277;0.00769)		all cancers(265;0.112)|Epithelial(280;0.229)		TGTGAAAGAGAATTTACTTGA	0.463												
RWDD3	25950	broad.mit.edu	37	1	95710148	95710148	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:95710148T>C	uc009wdu.2	+	2	543	c.467T>C	c.(466-468)GTC>GCC	p.V156A	RWDD3_uc001drd.3_3'UTR|RWDD3_uc010oty.1_Missense_Mutation_p.V141A|RWDD3_uc009wdt.2_Missense_Mutation_p.V156A|RWDD3_uc001drf.3_Missense_Mutation_p.V156A|RWDD3_uc001drh.3_Missense_Mutation_p.V141A|RWDD3_uc009wdv.2_RNA|RWDD3_uc001drg.3_RNA|RWDD3_uc001dri.3_Missense_Mutation_p.V156A	NM_015485	NP_056300	Q9Y3V2	RWDD3_HUMAN	RWD domain containing 3 isoform a	156						cytoplasm|nucleus	protein binding			ovary(1)	1		all_epithelial(167;5.99e-05)|all_lung(203;0.00168)|Lung NSC(277;0.00769)		all cancers(265;0.112)|Epithelial(280;0.229)		ACTAAATATGTCAAAATTGTG	0.383												
FRRS1	391059	broad.mit.edu	37	1	100212942	100212942	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:100212942G>A	uc001dsh.1	-	4	843	c.241C>T	c.(241-243)CGT>TGT	p.R81C		NM_001013660	NP_001013682	Q6ZNA5	FRRS1_HUMAN	stromal cell derived factor receptor 2 homolog	81	Reelin.				electron transport chain|transport	integral to membrane	ferric-chelate reductase activity|metal ion binding			skin(1)	1		all_epithelial(167;2.09e-06)|all_lung(203;0.000435)|Lung NSC(277;0.00201)		Epithelial(280;0.0718)|all cancers(265;0.126)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.206)		TCAGCATTACGCGCTTCTAGG	0.388												
CDC14A	8556	broad.mit.edu	37	1	100964808	100964808	+	Missense_Mutation	SNP	G	G	A	rs148639495	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:100964808G>A	uc001dtg.3	+	15	2233	c.1745G>A	c.(1744-1746)CGT>CAT	p.R582H	CDC14A_uc010oui.1_Missense_Mutation_p.R524H|CDC14A_uc001dtf.2_Missense_Mutation_p.R582H|CDC14A_uc009wed.1_Missense_Mutation_p.R289H|CDC14A_uc009wee.2_Missense_Mutation_p.R582H	NM_003672	NP_003663	Q9UNH5	CC14A_HUMAN	CDC14 homolog A isoform 1	582					cell cycle|cell division|cell proliferation	centrosome|nucleus|spindle	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			large_intestine(1)	1		all_epithelial(167;3.71e-06)|all_lung(203;0.00097)|Lung NSC(277;0.001)		Epithelial(280;0.0676)|all cancers(265;0.127)|COAD - Colon adenocarcinoma(174;0.201)|Lung(183;0.227)|Colorectal(144;0.241)		TTCCTGAGCCGTTCTATCCCT	0.592												
VCAM1	7412	broad.mit.edu	37	1	101194879	101194879	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:101194879T>A	uc001dti.2	+	5	1265	c.1145T>A	c.(1144-1146)CTG>CAG	p.L382Q	VCAM1_uc001dtj.2_Intron|VCAM1_uc010ouj.1_Missense_Mutation_p.L320Q	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	382	Ig-like C2-type 4.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	CACTCTTATCTGTGCACAGTG	0.468												
SLC30A7	148867	broad.mit.edu	37	1	101387377	101387377	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:101387377A>G	uc001dtn.2	+	8	1009	c.822A>G	c.(820-822)ATA>ATG	p.I274M	SLC30A7_uc001dto.2_Missense_Mutation_p.I274M	NM_001144884	NP_001138356	Q8NEW0	ZNT7_HUMAN	zinc transporter like 2	274	Helical; (Potential).				zinc ion transport	Golgi apparatus|integral to membrane	cation transmembrane transporter activity|protein binding				0		all_epithelial(167;0.000445)|all_lung(203;0.00645)|Lung NSC(277;0.0119)		Epithelial(280;0.0437)|all cancers(265;0.0498)|COAD - Colon adenocarcinoma(174;0.162)|Colorectal(144;0.19)|Lung(183;0.201)		CAATTCTTATAGCCATTCTTA	0.323												
SLC30A7	148867	broad.mit.edu	37	1	101431471	101431471	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:101431471T>C	uc001dtn.2	+	10	1267	c.1080T>C	c.(1078-1080)ACT>ACC	p.T360T	SLC30A7_uc001dto.2_Silent_p.T360T	NM_001144884	NP_001138356	Q8NEW0	ZNT7_HUMAN	zinc transporter like 2	360	Cytoplasmic (Potential).				zinc ion transport	Golgi apparatus|integral to membrane	cation transmembrane transporter activity|protein binding				0		all_epithelial(167;0.000445)|all_lung(203;0.00645)|Lung NSC(277;0.0119)		Epithelial(280;0.0437)|all cancers(265;0.0498)|COAD - Colon adenocarcinoma(174;0.162)|Colorectal(144;0.19)|Lung(183;0.201)		ATATTTTTACTCAGGTATGTC	0.269												
NTNG1	22854	broad.mit.edu	37	1	107867505	107867505	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:107867505G>A	uc001dvh.3	+	3	1566	c.848G>A	c.(847-849)CGC>CAC	p.R283H	NTNG1_uc001dvf.3_Missense_Mutation_p.R283H|NTNG1_uc010out.1_Missense_Mutation_p.R283H|NTNG1_uc001dvc.3_Missense_Mutation_p.R283H|NTNG1_uc001dvd.1_Missense_Mutation_p.R283H	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	283	Laminin N-terminal.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		CACTTGGCACGCTACTTTTAC	0.453												
VAV3	10451	broad.mit.edu	37	1	108507366	108507366	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:108507366C>T	uc001dvk.1	-	1	180	c.126G>A	c.(124-126)CTG>CTA	p.L42L	VAV3_uc010ouw.1_Silent_p.L42L|VAV3_uc001dvl.1_5'Flank|VAV3_uc010oux.1_Silent_p.L42L	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	42	CH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		GCTGGCAGAGCAGGACTCCAT	0.637												
TAF13	6884	broad.mit.edu	37	1	109607261	109607261	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:109607261C>T	uc001dwm.1	-	4	314	c.259G>A	c.(259-261)GTC>ATC	p.V87I		NM_005645	NP_005636	Q15543	TAF13_HUMAN	TBP-associated factor 13	87					transcription elongation from RNA polymerase II promoter|viral reproduction	transcription factor TFIID complex	protein C-terminus binding|sequence-specific DNA binding transcription factor activity				0		all_epithelial(167;0.000102)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0138)|Lung(183;0.0425)|COAD - Colon adenocarcinoma(174;0.113)|Epithelial(280;0.166)|all cancers(265;0.191)|LUSC - Lung squamous cell carcinoma(189;0.228)		ATCAAGAAGACGATATCTTCA	0.343												
KIAA1324	57535	broad.mit.edu	37	1	109742806	109742806	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:109742806T>C	uc001dwq.2	+	21	2890	c.2754T>C	c.(2752-2754)TGT>TGC	p.C918C	KIAA1324_uc009wex.1_Silent_p.C868C|KIAA1324_uc009wey.2_Silent_p.C831C|KIAA1324_uc010ovg.1_Silent_p.C816C|KIAA1324_uc001dwr.2_Silent_p.C568C|KIAA1324_uc001dws.1_RNA|KIAA1324_uc009wez.1_RNA	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	918	Helical; (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		CAGGCACCTGTACTGCCATCC	0.488												
CELSR2	1952	broad.mit.edu	37	1	109793883	109793883	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:109793883T>A	uc001dxa.3	+	1	1243	c.1182T>A	c.(1180-1182)GAT>GAA	p.D394E		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	394	Cadherin 2.|Extracellular (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		ATGACAATGATAATGCCCCCC	0.577												
GNAT2	2780	broad.mit.edu	37	1	110151277	110151277	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:110151277T>C	uc001dya.2	-	4	650	c.437A>G	c.(436-438)TAC>TGC	p.Y146C		NM_005272	NP_005263	P19087	GNAT2_HUMAN	guanine nucleotide binding protein, alpha	146					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|rhodopsin mediated phototransduction	heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment membrane	G-protein beta/gamma-subunit complex binding|G-protein coupled photoreceptor activity|G-protein-coupled receptor binding|GTP binding|GTPase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0422)|Colorectal(144;0.108)|Epithelial(280;0.125)|all cancers(265;0.129)|LUSC - Lung squamous cell carcinoma(189;0.227)		ATTAAGCTGGTATTCTGCAGC	0.517												
EPS8L3	79574	broad.mit.edu	37	1	110301149	110301149	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:110301149G>A	uc001dyr.1	-	7	743	c.598C>T	c.(598-600)CAC>TAC	p.H200Y	EPS8L3_uc001dys.1_Missense_Mutation_p.H200Y|EPS8L3_uc001dyq.1_Missense_Mutation_p.H201Y|EPS8L3_uc009wfm.1_Missense_Mutation_p.H167Y|EPS8L3_uc009wfn.1_Missense_Mutation_p.H167Y|EPS8L3_uc009wfo.1_Missense_Mutation_p.H147Y	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	200	Pro-rich.					cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		AACTTACTGTGCTCTAGGGTC	0.577												
SLC6A17	388662	broad.mit.edu	37	1	110734660	110734660	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:110734660C>A	uc009wfq.2	+	7	1392	c.931C>A	c.(931-933)CTG>ATG	p.L311M	SLC6A17_uc001dze.1_5'Flank	NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	311	Helical; Name=6; (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		TGCCTTGGGCCTGGGCTTTGG	0.557												
C1orf103	55791	broad.mit.edu	37	1	111490689	111490689	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:111490689C>T	uc001eaa.2	-	4	2458	c.2202G>A	c.(2200-2202)CCG>CCA	p.P734P	C1orf103_uc001dzz.2_Silent_p.P198P|C1orf103_uc001eab.2_Silent_p.P198P|C1orf103_uc001eac.1_Silent_p.P197P	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	734					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		CTTCTAACTCCGGTGGTGTCA	0.378												
CHIA	27159	broad.mit.edu	37	1	111857963	111857963	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:111857963A>C	uc001eas.2	+	6	489	c.386A>C	c.(385-387)CAG>CCG	p.Q129P	CHIA_uc001ear.2_Missense_Mutation_p.Q21P|CHIA_uc001eaq.2_Missense_Mutation_p.Q21P|CHIA_uc009wgc.2_Missense_Mutation_p.Q21P|CHIA_uc001eat.2_Intron|CHIA_uc001eav.2_5'UTR|CHIA_uc001eau.2_Intron|CHIA_uc009wgd.2_Intron	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c	129					apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		TTCCTGCGCCAGTATGAGTTT	0.552												
ADORA3	140	broad.mit.edu	37	1	112031596	112031596	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:112031596C>T	uc001ebf.2	-	3	1275	c.508G>A	c.(508-510)GCT>ACT	p.A170T	ADORA3_uc001ebg.3_Missense_Mutation_p.A89T	NM_020683	NP_065734	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 1	Error:Variant_position_missing_in_P33765_after_alignment					activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	ATGGCAGAAGCCGTGTCCAGC	0.403												
KCND3	3752	broad.mit.edu	37	1	112525069	112525069	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:112525069C>T	uc001ebu.1	-	2	760	c.280G>A	c.(280-282)GTG>ATG	p.V94M	KCND3_uc001ebv.1_Missense_Mutation_p.V94M	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	94	Cytoplasmic (Potential).		V -> M (in a colorectal cancer sample; somatic mutation).			sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding	p.V94M(1)		ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		AAGTTGAGCACGCAGCGGAAC	0.612												
PPM1J	333926	broad.mit.edu	37	1	113252813	113252813	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:113252813G>A	uc001ect.1	-	10	1517	c.1490C>T	c.(1489-1491)CCC>CTC	p.P497L	RHOC_uc001ecq.1_5'Flank|RHOC_uc001ecr.1_5'Flank|RHOC_uc009wgk.1_5'Flank|PPM1J_uc009wgl.1_Intron|PPM1J_uc001ecs.1_Missense_Mutation_p.P291L	NM_005167	NP_005158	Q5JR12	PPM1J_HUMAN	protein phosphatase 1J (PP2C domain containing)	497	PP2C-like.									breast(2)|central_nervous_system(1)	3	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCCTCCCAGGGGGATGACGAA	0.612												
LRIG2	9860	broad.mit.edu	37	1	113638869	113638869	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:113638869C>T	uc001edf.1	+	8	1171	c.973C>T	c.(973-975)CGC>TGC	p.R325C	LRIG2_uc009wgn.1_Missense_Mutation_p.R222C	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	325	LRR 11.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		CCAGCTGACCCGCCTGGATGA	0.373												
DCLRE1B	64858	broad.mit.edu	37	1	114450657	114450657	+	Missense_Mutation	SNP	C	C	G	rs34762757		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:114450657C>G	uc001eeg.2	+	3	553	c.382C>G	c.(382-384)CTA>GTA	p.L128V	AP4B1_uc001eed.2_5'Flank|AP4B1_uc010owp.1_5'Flank|DCLRE1B_uc001eeh.2_Missense_Mutation_p.L2V|DCLRE1B_uc001eei.2_Missense_Mutation_p.L2V	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	128					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACCATCCATGCTAAAGGAGCC	0.478								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function				
DCLRE1B	64858	broad.mit.edu	37	1	114454019	114454019	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:114454019C>A	uc001eeg.2	+	4	976	c.805C>A	c.(805-807)CAC>AAC	p.H269N	DCLRE1B_uc001eeh.2_Missense_Mutation_p.H143N|DCLRE1B_uc001eei.2_Missense_Mutation_p.H143N	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	269					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCCTGATATCCACGTCATCCC	0.552								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function				
DENND2C	163259	broad.mit.edu	37	1	115168676	115168676	+	Translation_Start_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:115168676T>C	uc001efd.1	-	4	632	c.-70A>G	c.(-72--68)ATACA>ATGCA		DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Translation_Start_Site	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGAAATATTGTATTCTTTATC	0.328												
IGSF3	3321	broad.mit.edu	37	1	117122169	117122169	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:117122169G>A	uc001egr.1	-	10	3884	c.3179C>T	c.(3178-3180)CCG>CTG	p.P1060L	IGSF3_uc001egq.1_Missense_Mutation_p.P1080L	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	1060	Ig-like C2-type 8.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		GTAGAGCACCGGGGAGAGCCT	0.637												
IGSF3	3321	broad.mit.edu	37	1	117156447	117156447	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:117156447A>G	uc001egr.1	-	4	1477	c.772T>C	c.(772-774)TCG>CCG	p.S258P	IGSF3_uc001egq.1_Missense_Mutation_p.S258P	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	258	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		GCATACCACGACCCATCCGGA	0.602												
CD2	914	broad.mit.edu	37	1	117297441	117297441	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:117297441T>C	uc001egu.3	+	2	279	c.250T>C	c.(250-252)TAT>CAT	p.Y84H	CD2_uc010owz.1_Missense_Mutation_p.Y84H|CD2_uc010oxa.1_Missense_Mutation_p.Y84H	NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	84	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	AAAAGATACATATAAGCTATT	0.299												
CD101	9398	broad.mit.edu	37	1	117564494	117564494	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:117564494C>T	uc010oxb.1	+	7	2375	c.2317C>T	c.(2317-2319)CGG>TGG	p.R773W	CD101_uc009whd.2_Missense_Mutation_p.R773W|CD101_uc010oxc.1_Missense_Mutation_p.R773W|CD101_uc010oxd.1_Missense_Mutation_p.R711W	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	773	Ig-like C2-type 6.|Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						AGACAGCGATCGGGGCAAATA	0.438												
TTF2	8458	broad.mit.edu	37	1	117619362	117619362	+	Missense_Mutation	SNP	G	G	A	rs139705346	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:117619362G>A	uc001egy.2	+	7	1510	c.1490G>A	c.(1489-1491)CGT>CAT	p.R497H	TTF2_uc001egx.1_Missense_Mutation_p.R497H	NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	497					mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		CCCCTTCCTCGTCGTGGTACC	0.547												
TRIM45	80263	broad.mit.edu	37	1	117658232	117658232	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:117658232T>C	uc001egz.2	-	4	2020	c.1432A>G	c.(1432-1434)ACT>GCT	p.T478A	TRIM45_uc009whe.2_Missense_Mutation_p.T460A|TRIM45_uc001eha.2_Missense_Mutation_p.T374A	NM_025188	NP_079464	Q9H8W5	TRI45_HUMAN	tripartite motif-containing 45 isoform 1	478	Filamin.					cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)	1	Lung SC(450;0.225)	all_cancers(81;0.000979)|all_lung(203;7.65e-05)|all_epithelial(167;0.000134)|Lung NSC(69;0.000389)		Lung(183;0.0537)|Colorectal(144;0.172)|LUSC - Lung squamous cell carcinoma(189;0.187)		ACCCACACAGTATAGACGCCA	0.488												
SPAG17	200162	broad.mit.edu	37	1	118530776	118530776	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:118530776T>C	uc001ehk.2	-	39	5641	c.5573A>G	c.(5572-5574)AAA>AGA	p.K1858R		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1858						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TGGTGGGCATTTTGGAGGCGT	0.363												
WARS2	10352	broad.mit.edu	37	1	119575743	119575743	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:119575743G>A	uc001ehn.2	-	6	902	c.874C>T	c.(874-876)CGC>TGC	p.R292C	WARS2_uc010oxf.1_Missense_Mutation_p.R198C|WARS2_uc001ehm.2_3'UTR|WARS2_uc010oxg.1_Missense_Mutation_p.R235C|WARS2_uc010oxh.1_3'UTR	NM_015836	NP_056651	Q9UGM6	SYWM_HUMAN	mitochondrial tryptophanyl tRNA synthetase 2	292					tryptophanyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|tryptophan-tRNA ligase activity				0	all_neural(166;0.187)	all_lung(203;2.48e-06)|Lung NSC(69;1.74e-05)|all_epithelial(167;0.000564)		Lung(183;0.0629)	L-Tryptophan(DB00150)	GCGCTGCGGCGCACCACTTCC	0.602												
REG4	83998	broad.mit.edu	37	1	120341118	120341118	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:120341118A>G	uc001eig.2	-	6	849	c.409_splice	c.e6+1	p.N137_splice	REG4_uc001eif.2_Splice_Site_p.N137_splice	NM_001159352	NP_001152824	Q9BYZ8	REG4_HUMAN	regenerating islet-derived family, member 4							extracellular region	sugar binding			ovary(1)	1	all_cancers(5;4.81e-10)|all_epithelial(5;7.98e-11)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;8.1e-07)|Lung NSC(69;5.89e-06)|all_epithelial(167;0.000959)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0588)		ATTATAACTTACTGTTATTGG	0.507												
NOTCH2	4853	broad.mit.edu	37	1	120458677	120458677	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:120458677T>C	uc001eik.2	-	34	6924	c.6668A>G	c.(6667-6669)CAG>CGG	p.Q2223R		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2223	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGATAGCAACTGGCTCACTGA	0.557			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome			
HFE2	148738	broad.mit.edu	37	1	145415465	145415465	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:145415465G>A	uc001eni.2	+	3	609	c.284G>A	c.(283-285)CGC>CAC	p.R95H	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_5'UTR|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	95					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CGCACCGCCCGCACCTGCCGC	0.682												
ITGA10	8515	broad.mit.edu	37	1	145534184	145534184	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:145534184T>C	uc001eoa.2	+	14	1765	c.1689T>C	c.(1687-1689)GGT>GGC	p.G563G	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Silent_p.G432G|ITGA10_uc009wiw.2_Silent_p.G420G|ITGA10_uc010oyw.1_Silent_p.G508G	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	563	Potential.|Extracellular (Potential).|FG-GAP 6.				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					ACCAAGATGGTTTTGCTGATG	0.587												
BCL9	607	broad.mit.edu	37	1	147096052	147096052	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:147096052A>G	uc001epq.2	+	10	4313	c.3573A>G	c.(3571-3573)GCA>GCG	p.A1191A	BCL9_uc010ozr.1_Silent_p.A1105A	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	1191	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CAGATGCAGCACTTTGCAAGC	0.632			T	IGH@|IGL@	B-ALL							
ACP6	51205	broad.mit.edu	37	1	147120182	147120182	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:147120182T>C	uc001epr.2	-	9	1473	c.1009A>G	c.(1009-1011)ACC>GCC	p.T337A		NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor	337					lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					GGTATGAAGGTCACATCATGA	0.498												
HIST2H2AC	8338	broad.mit.edu	37	1	149858893	149858893	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:149858893C>T	uc001etd.2	+	1	369	c.369C>T	c.(367-369)AGC>AGT	p.S123S	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	123					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			AAACCGAAAGCCACAAAGCCA	0.463												
HIST2H2AB	317772	broad.mit.edu	37	1	149859204	149859204	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:149859204A>G	uc001ete.2	-	1	263	c.263T>C	c.(262-264)GTG>GCG	p.V88A	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	88					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GTCATTCCTCACGGCTAGTTG	0.587												
CA14	23632	broad.mit.edu	37	1	150235560	150235560	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:150235560A>G	uc001etx.2	+	7	991	c.682A>G	c.(682-684)ACA>GCA	p.T228A		NM_012113	NP_036245	Q9ULX7	CAH14_HUMAN	carbonic anhydrase XIV precursor	228	Extracellular (Potential).					integral to membrane	carbonate dehydratase activity|metal ion binding			ovary(1)	1	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGTGCTCTGGACAGTTTTTTA	0.512												
RPRD2	23248	broad.mit.edu	37	1	150445370	150445370	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:150445370G>A	uc009wlr.2	+	11	4147	c.3946G>A	c.(3946-3948)GGA>AGA	p.G1316R	RPRD2_uc010pcc.1_3'UTR|RPRD2_uc001eup.3_Missense_Mutation_p.G1290R	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	1316	Pro-rich.						protein binding			ovary(1)	1						GGCAGAGCACGGAGTGGCAGG	0.607												
ECM1	1893	broad.mit.edu	37	1	150484269	150484269	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:150484269T>C	uc001eus.2	+	7	1244	c.1045T>C	c.(1045-1047)TGC>CGC	p.C349R	ECM1_uc001eut.2_Intron|ECM1_uc001euu.2_Missense_Mutation_p.C378R|ECM1_uc001euv.2_Missense_Mutation_p.C376R|ECM1_uc009wlu.2_Missense_Mutation_p.C109R	NM_004425	NP_004416	Q16610	ECM1_HUMAN	extracellular matrix protein 1 isoform 1	349	2 X approximate repeats.|2.				angiogenesis|biomineral tissue development|negative regulation of bone mineralization|negative regulation of peptidase activity|ossification|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade	proteinaceous extracellular matrix	laminin binding|protease binding|protein C-terminus binding|signal transducer activity			ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.29e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			CCAGCGCTGCTGCCGCCAGGG	0.627												
SETDB1	9869	broad.mit.edu	37	1	150931668	150931668	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:150931668A>G	uc001evu.2	+	15	2535	c.2345A>G	c.(2344-2346)AAC>AGC	p.N782S	SETDB1_uc001evv.2_Missense_Mutation_p.N782S|SETDB1_uc009wmg.1_Missense_Mutation_p.N782S	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	782	Pre-SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			TATGAGTGTAACAAACGCTGC	0.403												
SETDB1	9869	broad.mit.edu	37	1	150933482	150933482	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:150933482G>A	uc001evu.2	+	16	3134	c.2944G>A	c.(2944-2946)GCC>ACC	p.A982T	SETDB1_uc001evv.2_Missense_Mutation_p.A982T|SETDB1_uc009wmg.1_Missense_Mutation_p.A982T	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	982	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			GAACAAGGTGGCCTCATGGTT	0.542												
BNIPL	149428	broad.mit.edu	37	1	151011305	151011305	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:151011305G>A	uc001ewl.2	+	4	409	c.236G>A	c.(235-237)GGC>GAC	p.G79D	BNIPL_uc009wmi.2_5'UTR|BNIPL_uc009wmj.2_RNA	NM_138278	NP_612122	Q7Z465	BNIPL_HUMAN	BCL2/adenovirus E1B 19kD interacting protein	79					apoptosis|induction of apoptosis|negative regulation of cell proliferation|regulation of growth rate	cytosol|nucleus	identical protein binding				0	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GCCCTGTGTGGCCAGCGCCCC	0.577												
SEMA6C	10500	broad.mit.edu	37	1	151109535	151109535	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:151109535C>T	uc001ewu.2	-	11	1072	c.772G>A	c.(772-774)GTA>ATA	p.V258I	SEMA6C_uc001ewv.2_Missense_Mutation_p.V258I|SEMA6C_uc001eww.2_Missense_Mutation_p.V218I|SEMA6C_uc010pcq.1_Missense_Mutation_p.V258I|SEMA6C_uc009wml.1_RNA	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	258	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			ACTCGGGCTACGCGGGAGAAC	0.592												
ZNF687	57592	broad.mit.edu	37	1	151259923	151259923	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:151259923G>C	uc001exq.2	+	2	1254	c.1156G>C	c.(1156-1158)GTG>CTG	p.V386L	ZNF687_uc001exp.1_Missense_Mutation_p.V395L|ZNF687_uc009wmo.2_Missense_Mutation_p.V386L|ZNF687_uc009wmp.2_Missense_Mutation_p.V386L	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	386					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TCCAAAGGTGGTGAGCGTACA	0.587												
PSMB4	5692	broad.mit.edu	37	1	151372168	151372168	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:151372168G>A	uc001eyc.1	+	1	128	c.105G>A	c.(103-105)GCG>GCA	p.A35A	PSMB4_uc010pda.1_Silent_p.A35A|PSMB4_uc001eyb.1_Silent_p.A35A	NM_002796	NP_002787	P28070	PSB4_HUMAN	proteasome beta 4 subunit	35					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity			ovary(2)	2	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TGGATCCGGCGTCTGCACTTT	0.627												
LINGO4	339398	broad.mit.edu	37	1	151774479	151774479	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:151774479C>T	uc001ezf.1	-	2	892	c.702G>A	c.(700-702)GAG>GAA	p.E234E		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	234	Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			AGAGGTGGATCTCCAGCTCCT	0.642												
RPTN	126638	broad.mit.edu	37	1	152129190	152129190	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:152129190T>C	uc001ezs.1	-	3	450	c.385A>G	c.(385-387)AGG>GGG	p.R129G		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	129	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						GAGTTCTGCCTTTCTTCCTCG	0.542												
FLG	2312	broad.mit.edu	37	1	152278828	152278828	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:152278828T>C	uc001ezu.1	-	3	8570	c.8534A>G	c.(8533-8535)GAA>GGA	p.E2845G		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2845	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTGATTGTTCCTCATTACG	0.562									Ichthyosis			
FLG	2312	broad.mit.edu	37	1	152282840	152282840	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:152282840A>T	uc001ezu.1	-	3	4558	c.4522T>A	c.(4522-4524)TCA>ACA	p.S1508T		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1508	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTATCTACTGATTGCTCGTGG	0.577									Ichthyosis			
FLG2	388698	broad.mit.edu	37	1	152326301	152326301	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:152326301T>C	uc001ezw.3	-	3	4034	c.3961A>G	c.(3961-3963)ACC>GCC	p.T1321A	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1321							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCTAGTGGTATCTCCTCTC	0.473												
LCE2C	353140	broad.mit.edu	37	1	152648551	152648551	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:152648551T>C	uc001fah.2	+	2	115	c.60T>C	c.(58-60)TGT>TGC	p.C20C		NM_178429	NP_848516	Q5TA81	LCE2C_HUMAN	late cornified envelope 2C	20	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			ctcccaagtgtaccccaaaat	0.383												
NPR1	4881	broad.mit.edu	37	1	153659753	153659753	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:153659753C>A	uc001fcs.3	+	13	2434	c.2013C>A	c.(2011-2013)CGC>CGA	p.R671R	NPR1_uc010pdz.1_Silent_p.R417R|NPR1_uc010pea.1_Silent_p.R149R	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	671	Cytoplasmic (Potential).|Protein kinase.				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	TAGATGGGCGCTTTGTGCTCA	0.542												
DENND4B	9909	broad.mit.edu	37	1	153908639	153908639	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:153908639A>G	uc001fdd.1	-	17	2866	c.2465T>C	c.(2464-2466)CTC>CCC	p.L822P		NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	822	PPR 2.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GTGTGAGCAGAGCTGCATCAG	0.552												
RAB13	5872	broad.mit.edu	37	1	153955025	153955025	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:153955025T>C	uc001fdt.1	-	6	560	c.466A>G	c.(466-468)ATG>GTG	p.M156V	RAB13_uc001fdu.1_3'UTR	NM_002870	NP_002861	P51153	RAB13_HUMAN	RAB13, member RAS oncogene family	156					cell adhesion|protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	cytoplasmic vesicle membrane|tight junction	GTP binding|GTPase activity				0	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			TCCACATTCATACTGGATTTA	0.473												
C1orf43	25912	broad.mit.edu	37	1	154185068	154185068	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:154185068G>A	uc001fei.2	-	5	763	c.373C>T	c.(373-375)CGT>TGT	p.R125C	C1orf43_uc001fef.1_Missense_Mutation_p.R22C|C1orf43_uc001feg.2_Missense_Mutation_p.R91C|C1orf43_uc001feh.2_Missense_Mutation_p.R73C|C1orf43_uc001fej.2_Missense_Mutation_p.R107C|C1orf43_uc009wos.1_Missense_Mutation_p.R107C|C1orf43_uc001fek.2_Missense_Mutation_p.R125C|C1orf43_uc001fel.2_Missense_Mutation_p.R91C	NM_001098616	NP_001092086	Q9BWL3	CA043_HUMAN	hypothetical protein LOC25912 isoform 3	125						integral to membrane	coenzyme binding|oxidoreductase activity				0	all_lung(78;1.98e-30)|Lung NSC(65;2.87e-28)|Hepatocellular(266;0.0877)					ATTAAGGAACGGGGATGCCGG	0.408												
UBAP2L	9898	broad.mit.edu	37	1	154199796	154199796	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:154199796G>A	uc001fep.3	+	3	296	c.129G>A	c.(127-129)TCG>TCA	p.S43S	UBAP2L_uc009wot.2_Silent_p.S43S|UBAP2L_uc010pek.1_Silent_p.S42S|UBAP2L_uc010pel.1_Silent_p.S42S|UBAP2L_uc001fen.1_Silent_p.S42S|UBAP2L_uc010pem.1_Silent_p.S42S|UBAP2L_uc010pen.1_5'Flank	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	43					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			AGATGATTTCGGACCATAATG	0.383												
HAX1	10456	broad.mit.edu	37	1	154246038	154246038	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:154246038G>A	uc001fes.2	+	2	441	c.280G>A	c.(280-282)GAT>AAT	p.D94N	HAX1_uc001fet.2_Missense_Mutation_p.D46N|HAX1_uc010peo.1_Missense_Mutation_p.D94N|HAX1_uc009wou.2_5'UTR|HAX1_uc009wov.2_Missense_Mutation_p.D68N	NM_006118	NP_006109	O00165	HAX1_HUMAN	HCLS1 associated protein X-1 isoform a	94						actin cytoskeleton|cytoplasmic membrane-bounded vesicle|lamellipodium|mitochondrion|nuclear membrane|sarcoplasmic reticulum|soluble fraction	interleukin-1 binding|protein N-terminus binding				0	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			CATCTTCAGCGATATGGGGGC	0.522									Kostmann_syndrome			
HAX1	10456	broad.mit.edu	37	1	154246292	154246292	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:154246292G>A	uc001fes.2	+	3	520	c.359G>A	c.(358-360)CGG>CAG	p.R120Q	HAX1_uc001fet.2_Missense_Mutation_p.R72Q|HAX1_uc010peo.1_Missense_Mutation_p.R128Q|HAX1_uc009wou.2_Missense_Mutation_p.R45Q|HAX1_uc009wov.2_Missense_Mutation_p.R94Q	NM_006118	NP_006109	O00165	HAX1_HUMAN	HCLS1 associated protein X-1 isoform a	120	Involved in HCLS1 binding.					actin cytoskeleton|cytoplasmic membrane-bounded vesicle|lamellipodium|mitochondrion|nuclear membrane|sarcoplasmic reticulum|soluble fraction	interleukin-1 binding|protein N-terminus binding				0	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			GAGAGACTACGGGAGGGACAG	0.517									Kostmann_syndrome			
SHE	126669	broad.mit.edu	37	1	154458516	154458516	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:154458516G>A	uc001ffb.2	-	5	1291	c.1204C>T	c.(1204-1206)CGT>TGT	p.R402C	SHE_uc001ffc.2_RNA	NM_001010846	NP_001010846	Q5VZ18	SHE_HUMAN	Src homology 2 domain containing E	402	SH2.									breast(3)|ovary(2)|central_nervous_system(1)	6	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			GCCTCAGCACGGCTGATGGCA	0.498												
UBE2Q1	55585	broad.mit.edu	37	1	154524643	154524643	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:154524643C>T	uc001fff.1	-	8	983	c.892G>A	c.(892-894)GCT>ACT	p.A298T		NM_017582	NP_060052	Q7Z7E8	UB2Q1_HUMAN	ubiquitin-conjugating enzyme E2Q	298							ATP binding|protein binding|ubiquitin-protein ligase activity				0	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			TTGTGCAAAGCGCTGTCCTGG	0.493												
UBE2Q1	55585	broad.mit.edu	37	1	154525264	154525264	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:154525264G>A	uc001fff.1	-	6	853	c.762C>T	c.(760-762)GAC>GAT	p.D254D		NM_017582	NP_060052	Q7Z7E8	UB2Q1_HUMAN	ubiquitin-conjugating enzyme E2Q	254							ATP binding|protein binding|ubiquitin-protein ligase activity				0	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			TCATCAGCCGGTCAGTGGCCT	0.532												
ADAR	103	broad.mit.edu	37	1	154569432	154569432	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:154569432A>T	uc001ffh.2	-	6	2319	c.2119T>A	c.(2119-2121)TCC>ACC	p.S707T	ADAR_uc001ffj.2_Intron|ADAR_uc001ffi.2_Missense_Mutation_p.S707T|ADAR_uc001ffk.2_Missense_Mutation_p.S412T	NM_001111	NP_001102	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific isoform a	707					adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		GGCATCATGGATTCCAAGTTA	0.493												
PYGO2	90780	broad.mit.edu	37	1	154931981	154931981	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:154931981T>C	uc001fft.2	-	3	701	c.495A>G	c.(493-495)CAA>CAG	p.Q165Q		NM_138300	NP_612157	Q9BRQ0	PYGO2_HUMAN	pygopus homolog 2	165	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding|zinc ion binding			skin(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GGTTGAAGGGTTGGCTGGGAA	0.607												
FLAD1	80308	broad.mit.edu	37	1	154960959	154960959	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:154960959G>A	uc001fgf.1	+	2	1105	c.751G>A	c.(751-753)GTC>ATC	p.V251I	FLAD1_uc001fgc.2_Missense_Mutation_p.V152I|FLAD1_uc001fgd.1_Missense_Mutation_p.V251I|FLAD1_uc001fge.1_Missense_Mutation_p.V154I|FLAD1_uc001fgg.1_Missense_Mutation_p.V154I|FLAD1_uc001fgh.1_5'UTR	NM_025207	NP_079483	Q8NFF5	FAD1_HUMAN	flavin adenine dinucleotide synthetase isoform	251					FAD biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|FMN adenylyltransferase activity			ovary(2)|skin(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CGTCCGAAACGTCTACCTCTT	0.557												
THBS3	7059	broad.mit.edu	37	1	155170773	155170773	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:155170773T>C	uc001fix.2	-	13	1486	c.1463A>G	c.(1462-1464)AAC>AGC	p.N488S	RAG1AP1_uc010pey.1_Intron|THBS3_uc009wqi.2_Missense_Mutation_p.N479S|THBS3_uc001fiz.2_Missense_Mutation_p.N451S|THBS3_uc001fiy.2_Missense_Mutation_p.N17S|THBS3_uc010pfu.1_Missense_Mutation_p.N368S|THBS3_uc010pfv.1_RNA|THBS3_uc001fja.2_RNA	NM_007112	NP_009043	P49746	TSP3_HUMAN	thrombospondin 3 precursor	488	TSP type-3 1.				cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(3)|ovary(2)	5	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CTGCCCAGAGTTGGGTGTCAA	0.552												
HCN3	57657	broad.mit.edu	37	1	155255658	155255658	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:155255658C>T	uc001fjz.1	+	6	1388	c.1380C>T	c.(1378-1380)TCC>TCT	p.S460S	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_Silent_p.S155S	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	460	Cytoplasmic (Potential).|cAMP.					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GTGAGGGCTCCGTGGGGAGGA	0.637												
RUSC1	23623	broad.mit.edu	37	1	155292385	155292385	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:155292385A>G	uc001fkj.2	+	2	1050	c.821A>G	c.(820-822)GAC>GGC	p.D274G	RAG1AP1_uc010pey.1_Intron|C1orf104_uc001fkh.1_5'Flank|C1orf104_uc001fki.2_Intron|RUSC1_uc001fkk.2_Missense_Mutation_p.D274G|RUSC1_uc009wqn.1_RNA|RUSC1_uc009wqo.1_5'Flank|RUSC1_uc001fkl.2_5'Flank|RUSC1_uc001fkp.2_5'Flank|RUSC1_uc001fkq.2_5'Flank|RUSC1_uc010pgb.1_5'Flank|RUSC1_uc009wqp.1_5'Flank|RUSC1_uc001fkn.2_5'Flank|RUSC1_uc001fko.2_5'Flank|RUSC1_uc001fkr.2_5'Flank|RUSC1_uc001fks.2_5'Flank	NM_001105203	NP_001098673	Q9BVN2	RUSC1_HUMAN	RUN and SH3 domain containing 1 isoform a	274						cytoplasm|nucleolus	SH3/SH2 adaptor activity			ovary(2)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;1.55e-10)|all cancers(21;4.15e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)			GAAAAATTCGACTCTGGTTGG	0.418												
ASH1L	55870	broad.mit.edu	37	1	155491319	155491319	+	Translation_Start_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:155491319T>C	uc009wqq.2	-	2	472	c.-8A>G	c.(-10--6)ATACG>ATGCG		ASH1L_uc001fkt.2_Translation_Start_Site|ASH1L_uc009wqr.1_Translation_Start_Site	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like						cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			ATCACAAGCGTATGTTATTGC	0.393												
LMNA	4000	broad.mit.edu	37	1	156108471	156108471	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:156108471G>A	uc001fni.2	+	11	2140	c.1891G>A	c.(1891-1893)GGC>AGC	p.G631S	LMNA_uc001fnf.1_3'UTR|LMNA_uc001fnh.2_Missense_Mutation_p.G601S|LMNA_uc009wro.1_Intron|LMNA_uc001fnj.2_3'UTR|LMNA_uc001fnk.2_Missense_Mutation_p.G532S|LMNA_uc010pha.1_3'UTR|LMNA_uc010phb.1_RNA	NM_170707	NP_733821	P02545	LMNA_HUMAN	lamin A/C isoform 1 precursor	631	Tail.				cellular component disassembly involved in apoptosis|cellular response to hypoxia|establishment or maintenance of microtubule cytoskeleton polarity|muscle organ development|positive regulation of cell aging|regulation of apoptosis|regulation of cell migration	cytoplasm|lamin filament|nuclear envelope|nuclear envelope|perinuclear region of cytoplasm	protein binding|structural molecule activity|structural molecule activity			ovary(2)	2	Hepatocellular(266;0.158)					CAGTGTGGGGGGCAGTGGGGG	0.652									Werner_syndrome|Hutchinson-Gilford_Progeria_Syndrome			
SLC25A44	9673	broad.mit.edu	37	1	156170077	156170077	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:156170077G>A	uc001fnp.2	+	2	761	c.439G>A	c.(439-441)GGC>AGC	p.G147S	SLC25A44_uc010phc.1_Intron|SLC25A44_uc009wrr.2_Missense_Mutation_p.G147S|SLC25A44_uc010phd.1_Intron|SLC25A44_uc010phe.1_Intron	NM_014655	NP_055470	Q96H78	S2544_HUMAN	solute carrier family 25, member 44	147	Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			ovary(1)	1	Hepatocellular(266;0.158)					TGAGAAAATGGGCCGCTTTCA	0.582												
PAQR6	79957	broad.mit.edu	37	1	156214025	156214025	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:156214025T>C	uc001fnu.1	-	8	1000	c.930A>G	c.(928-930)CTA>CTG	p.L310L	PAQR6_uc010phf.1_Missense_Mutation_p.Y160C|PAQR6_uc001fny.1_Missense_Mutation_p.Y88C|PAQR6_uc001fnv.1_Silent_p.L286L|PAQR6_uc010phg.1_Silent_p.L307L|PAQR6_uc001fnx.1_Silent_p.L204L|PAQR6_uc001fnw.1_Missense_Mutation_p.Y228C|PAQR6_uc001fnz.1_Missense_Mutation_p.Y228C|PAQR6_uc010phh.1_Silent_p.L310L|PAQR6_uc001foa.1_Silent_p.L204L|PAQR6_uc001fob.1_RNA	NM_198406	NP_940798	Q6TCH4	PAQR6_HUMAN	progestin and adipoQ receptor family member VI	310	Helical; (Potential).					integral to membrane	receptor activity				0	Hepatocellular(266;0.158)					CAATAATGAGTAGGTTCCCAG	0.627												
RHBG	57127	broad.mit.edu	37	1	156351209	156351209	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:156351209C>T	uc010pho.1	+	5	783	c.745C>T	c.(745-747)CGG>TGG	p.R249W	RHBG_uc010phm.1_Missense_Mutation_p.R87W|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Missense_Mutation_p.R180W|RHBG_uc009wrz.2_Missense_Mutation_p.R217W|RHBG_uc001for.2_Missense_Mutation_p.R219W	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	249	Extracellular (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					TGGGCAGCATCGGACGGCCCT	0.582												
MEF2D	4209	broad.mit.edu	37	1	156452281	156452281	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:156452281T>C	uc001fpc.2	-	3	596	c.206A>G	c.(205-207)TAC>TGC	p.Y69C	MEF2D_uc001fpb.2_Missense_Mutation_p.Y69C|MEF2D_uc001fpd.2_Missense_Mutation_p.Y69C|MEF2D_uc001fpe.1_Missense_Mutation_p.Y69C|MEF2D_uc009wsa.2_RNA	NM_005920	NP_005911	Q14814	MEF2D_HUMAN	myocyte enhancer factor 2D	69	Mef2-type (Potential).				apoptosis|muscle organ development|nervous system development|positive regulation of transcription from RNA polymerase II promoter	nucleus	activating transcription factor binding|histone deacetylase binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GTACTCCGTGTACTTGAGCAG	0.567												
IQGAP3	128239	broad.mit.edu	37	1	156499976	156499976	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:156499976C>T	uc001fpf.2	-	34	4400	c.4325G>A	c.(4324-4326)CGG>CAG	p.R1442Q		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	1442					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GCGTAGGTTCCGCAGGACGCG	0.647												
IQGAP3	128239	broad.mit.edu	37	1	156517928	156517928	+	Silent	SNP	C	C	T	rs151288646		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:156517928C>T	uc001fpf.2	-	19	2316	c.2241G>A	c.(2239-2241)CGG>CGA	p.R747R		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	747	IQ 1.				small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CAAACTTCTGCCGAACTAGGA	0.577												
IQGAP3	128239	broad.mit.edu	37	1	156532379	156532379	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:156532379C>T	uc001fpf.2	-	9	952	c.877G>A	c.(877-879)GTC>ATC	p.V293I	IQGAP3_uc009wsb.1_Missense_Mutation_p.V250I	NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	293					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGTCTCTTACCGTTGACATGG	0.507												
ARHGEF11	9826	broad.mit.edu	37	1	156955924	156955924	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:156955924C>T	uc001fqo.2	-	2	1114	c.74G>A	c.(73-75)CGC>CAC	p.R25H	ARHGEF11_uc001fqn.2_Missense_Mutation_p.R25H	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	25					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					AGGGGACTTGCGCTCTGGTGC	0.473												
CD1C	911	broad.mit.edu	37	1	158263003	158263003	+	Silent	SNP	A	A	G	rs114722992	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:158263003A>G	uc001fru.2	+	5	1183	c.891A>G	c.(889-891)GGA>GGG	p.G297G	CD1C_uc001frv.2_Intron	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	297	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					TATGTGCAGGACACCACTTTT	0.373												
OR6K2	81448	broad.mit.edu	37	1	158670434	158670434	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:158670434G>T	uc001fsu.1	-	1	9	c.9C>A	c.(7-9)AGC>AGA	p.S3R		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					TTCGATTGGGGCTCTCCATCT	0.433												
OR6K3	391114	broad.mit.edu	37	1	158687161	158687161	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:158687161T>A	uc010pip.1	-	1	793	c.793A>T	c.(793-795)ATA>TTA	p.I265L		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	265	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					CCAAAGAATATCGGGAAGACC	0.458												
OR6K3	391114	broad.mit.edu	37	1	158687464	158687464	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:158687464A>G	uc010pip.1	-	1	490	c.490T>C	c.(490-492)TCC>CCC	p.S164P		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	164	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					AAGAGGCAGGAACCTGCAGAG	0.512												
CADM3	57863	broad.mit.edu	37	1	159163707	159163707	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:159163707G>A	uc001ftl.2	+	5	710	c.568G>A	c.(568-570)GTC>ATC	p.V190I	CADM3_uc009wsy.1_Intron|CADM3_uc001ftk.2_Missense_Mutation_p.V224I	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	190	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					AACCTTCACTGTCAGCAGCTC	0.517												
OR10J3	441911	broad.mit.edu	37	1	159284344	159284344	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:159284344A>G	uc010piu.1	-	1	106	c.106T>C	c.(106-108)TAC>CAC	p.Y36H		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					GTCAGCAGGTACAAAGTTAGG	0.443												
FCRL6	343413	broad.mit.edu	37	1	159780002	159780002	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:159780002A>C	uc001fud.3	+	6	1047	c.1005A>C	c.(1003-1005)AAA>AAC	p.K335N	FCRL6_uc001fuc.2_Missense_Mutation_p.K342N|FCRL6_uc009wsz.1_Missense_Mutation_p.K240N|FCRL6_uc009wta.2_Missense_Mutation_p.K335N	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	335	Cytoplasmic (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					CCTGGAGAAAAGCTGGTCAGT	0.552												
VSIG8	391123	broad.mit.edu	37	1	159827580	159827580	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:159827580A>T	uc001fuh.2	-	4	743	c.607T>A	c.(607-609)TCA>ACA	p.S203T	C1orf204_uc001fuf.1_5'Flank|C1orf204_uc001fug.1_5'Flank	NM_001013661	NP_001013683	Q5VU13	VSIG8_HUMAN	V-set and immunoglobulin domain containing 8	203	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane				central_nervous_system(1)	1	all_hematologic(112;0.0597)					GACAGCTCTGAGTGGTAGCTG	0.597												
IGSF8	93185	broad.mit.edu	37	1	160063696	160063696	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:160063696C>A	uc001fva.2	-	3	753	c.708G>T	c.(706-708)GAG>GAT	p.E236D	IGSF8_uc001fuz.2_Missense_Mutation_p.E236D|IGSF8_uc009wtf.2_Missense_Mutation_p.E236D	NM_052868	NP_443100	Q969P0	IGSF8_HUMAN	immunoglobulin superfamily, member 8	236	Extracellular (Potential).|Ig-like C2-type 2.				cell proliferation|cellular component movement|nervous system development|single fertilization|skeletal muscle tissue development	integral to membrane	protein binding				0	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CAGCCAATCGCTCAGCATAGG	0.642												
ATP1A4	480	broad.mit.edu	37	1	160134082	160134082	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:160134082G>T	uc001fve.3	+	7	1394	c.915G>T	c.(913-915)GTG>GTT	p.V305V	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_5'Flank	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	305	Helical; (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TGATCACTGTGGTGGCCGTCT	0.527												
COPA	1314	broad.mit.edu	37	1	160267456	160267456	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:160267456T>C	uc009wti.2	-	20	2451	c.2057A>G	c.(2056-2058)AAC>AGC	p.N686S	COPA_uc001fvv.3_Missense_Mutation_p.N695S	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	686					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			AATCTGGTGGTTCCCCTGCAG	0.473												
COPA	1314	broad.mit.edu	37	1	160268702	160268702	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:160268702A>G	uc009wti.2	-	19	2304	c.1910T>C	c.(1909-1911)GTG>GCG	p.V637A	COPA_uc001fvv.3_Missense_Mutation_p.V646A	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	637					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ATGCAGTGCCACTTCAGGATA	0.463												
COPA	1314	broad.mit.edu	37	1	160276963	160276963	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:160276963C>T	uc009wti.2	-	14	1686	c.1292G>A	c.(1291-1293)CGG>CAG	p.R431Q	COPA_uc001fvv.3_Missense_Mutation_p.R431Q|COPA_uc009wtj.1_Missense_Mutation_p.R377Q	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	431					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CGAATGCATCCGATCTAGGAC	0.473												
NCSTN	23385	broad.mit.edu	37	1	160320035	160320035	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:160320035A>G	uc001fvx.2	+	5	701	c.577A>G	c.(577-579)AAG>GAG	p.K193E	NCSTN_uc001fvy.2_Missense_Mutation_p.K173E|NCSTN_uc010pjf.1_Missense_Mutation_p.K193E|NCSTN_uc001fvz.2_5'UTR|NCSTN_uc010pjg.1_5'UTR	NM_015331	NP_056146	Q92542	NICA_HUMAN	nicastrin precursor	193	Extracellular (Potential).				amyloid precursor protein catabolic process|apoptosis|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane|melanosome	protein binding			ovary(1)|lung(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CAAAGTCATCAAGCAGGTAAT	0.308												
ITLN2	142683	broad.mit.edu	37	1	160917764	160917764	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:160917764G>A	uc001fxd.2	-	7	838	c.780C>T	c.(778-780)AAC>AAT	p.N260N	ITLN2_uc009wts.2_Silent_p.N259N|ITLN2_uc010pju.1_Silent_p.N177N	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	260	Fibrinogen C-terminal.				signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			CACAAAGGGCGTTGGCTGCTC	0.408												
KLHDC9	126823	broad.mit.edu	37	1	161070003	161070003	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:161070003G>A	uc001fxr.2	+	4	1211	c.1039G>A	c.(1039-1041)GAC>AAC	p.D347N	KLHDC9_uc001fxq.2_Missense_Mutation_p.D109N|KLHDC9_uc001fxs.2_3'UTR	NM_152366	NP_689579	Q8NEP7	KLDC9_HUMAN	kelch/ankyrin repeat containing cyclin A1	347	Kelch 3.										0	all_cancers(52;1.28e-19)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			TTGCATCCTGGACTTTATCTA	0.473												
FCGR2C	9103	broad.mit.edu	37	1	161559418	161559418	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:161559418T>C	uc001gav.2	+	4	299	c.200T>C	c.(199-201)GTG>GCG	p.V67A	FCGR2C_uc009wuj.2_RNA|FCGR2C_uc009wuk.2_RNA	NM_201563	NP_963857			Fc fragment of IgG, low affinity IIc, receptor												0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GAGGACTCTGTGACTCTGACA	0.587												
RGS5	8490	broad.mit.edu	37	1	163122374	163122374	+	Missense_Mutation	SNP	T	T	C	rs144088608		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:163122374T>C	uc001gcn.2	-	4	597	c.350A>G	c.(349-351)TAT>TGT	p.Y117C	RGS5_uc009wvb.2_RNA	NM_003617	NP_003608	O15539	RGS5_HUMAN	regulator of G-protein signalling 5	117	RGS.				negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity				0			LUSC - Lung squamous cell carcinoma(543;0.187)			GAATTCTTCATAAATTTGCTT	0.453												
NUF2	83540	broad.mit.edu	37	1	163315530	163315530	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:163315530G>T	uc001gcq.1	+	11	1170	c.870G>T	c.(868-870)CAG>CAT	p.Q290H	NUF2_uc001gcp.2_Missense_Mutation_p.Q290H|NUF2_uc001gcr.1_Missense_Mutation_p.Q290H|NUF2_uc009wvc.1_Intron	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	290	Interaction with the N-terminus of NDC80.|Potential.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					CTTCATGTCAGTTGGAAGTGC	0.358												
RXRG	6258	broad.mit.edu	37	1	165386317	165386317	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:165386317G>A	uc001gda.2	-	4	883	c.583C>T	c.(583-585)CGC>TGC	p.R195C		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	195	NR C4-type.|Nuclear receptor.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	TTCTGATAGCGACAGTACTGG	0.512												
ALDH9A1	223	broad.mit.edu	37	1	165632366	165632366	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:165632366T>C	uc001gdh.1	-	11	1583	c.1478A>G	c.(1477-1479)AAC>AGC	p.N493S	ALDH9A1_uc010pky.1_Missense_Mutation_p.N399S|ALDH9A1_uc010pkz.1_Missense_Mutation_p.N483S	NM_000696	NP_000687	P49189	AL9A1_HUMAN	aldehyde dehydrogenase 9A1	469					carnitine biosynthetic process|cellular aldehyde metabolic process|hormone metabolic process|neurotransmitter biosynthetic process	cytosol|plasma membrane	3-chloroallyl aldehyde dehydrogenase activity|4-trimethylammoniobutyraldehyde dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|aminobutyraldehyde dehydrogenase activity				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				NADH(DB00157)	CACACGGCCGTTCTCTCTGCC	0.438												
TADA1	117143	broad.mit.edu	37	1	166838708	166838708	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:166838708C>T	uc001gdw.2	-	3	390	c.206G>A	c.(205-207)CGT>CAT	p.R69H	TADA1_uc009wve.2_Missense_Mutation_p.R69H	NM_053053	NP_444281	Q96BN2	TADA1_HUMAN	transcriptional adaptor 1-like	69					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(1)	1						AATCTGACAACGCGTGAGAAT	0.388												
ILDR2	387597	broad.mit.edu	37	1	166927241	166927241	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:166927241G>T	uc001gdx.1	-	2	200	c.144C>A	c.(142-144)TCC>TCA	p.S48S		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	48	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						CAGGCTGATGGGAGGATGTTG	0.572												
DUSP27	92235	broad.mit.edu	37	1	167095407	167095407	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:167095407G>A	uc001geb.1	+	5	1039	c.1039G>A	c.(1039-1041)GAG>AAG	p.E347K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	347					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CGAGGAGGAGGAGGAGAAACT	0.657												
SELL	6402	broad.mit.edu	37	1	169677585	169677585	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:169677585T>C	uc001ggk.2	-	3	643	c.445A>G	c.(445-447)AAA>GAA	p.K149E	C1orf112_uc001ggj.2_Intron|SELL_uc010pls.1_Missense_Mutation_p.K102E|SELL_uc001ggl.1_Missense_Mutation_p.K162E	NM_000655	NP_000646	P14151	LYAM1_HUMAN	selectin L precursor	149	C-type lectin.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	integral to plasma membrane	glycosphingolipid binding|heparin binding|protease binding|sugar binding				0	all_hematologic(923;0.208)					GCCTTTAGTTTGTGGCAGGCG	0.488												
SELE	6401	broad.mit.edu	37	1	169701051	169701051	+	Missense_Mutation	SNP	C	C	T	rs143566739		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:169701051C>T	uc001ggm.3	-	4	611	c.454G>A	c.(454-456)GGT>AGT	p.G152S	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	152	EGF-like.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					ACACATTCACCGTGGCCACTG	0.443												
C1orf112	55732	broad.mit.edu	37	1	169772333	169772333	+	Silent	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:169772333T>G	uc001ggp.2	+	6	505	c.195T>G	c.(193-195)GCT>GCG	p.A65A	C1orf112_uc001ggj.2_RNA|C1orf112_uc001ggo.2_Silent_p.A65A|C1orf112_uc001ggq.2_Silent_p.A65A|C1orf112_uc009wvt.2_5'UTR|C1orf112_uc010plu.1_Silent_p.A36A|C1orf112_uc009wvu.1_Silent_p.A36A|C1orf112_uc001ggr.2_5'UTR|C1orf112_uc010plv.1_Silent_p.A7A	NM_018186	NP_060656	Q9NSG2	CA112_HUMAN	hypothetical protein LOC55732	65											0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TCTTAGGAGCTCTCACAGGAT	0.299												
PRRX1	5396	broad.mit.edu	37	1	170695482	170695482	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:170695482T>C	uc001ghf.2	+	3	586	c.539T>C	c.(538-540)GTA>GCA	p.V180A	PRRX1_uc001ghe.2_Missense_Mutation_p.V180A	NM_022716	NP_073207	P54821	PRRX1_HUMAN	paired mesoderm homeobox 1 isoform pmx-1b	180						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity	p.V180I(1)		ovary(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CAGCCCATCGTACCTCGTCCT	0.562												
PRRX1	5396	broad.mit.edu	37	1	170695497	170695497	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:170695497C>T	uc001ghf.2	+	3	601	c.554C>T	c.(553-555)CCG>CTG	p.P185L	PRRX1_uc001ghe.2_Missense_Mutation_p.P185L	NM_022716	NP_073207	P54821	PRRX1_HUMAN	paired mesoderm homeobox 1 isoform pmx-1b	185						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CGTCCTGCTCCGAGACCCACC	0.557												
C1orf9	51430	broad.mit.edu	37	1	172558159	172558159	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:172558159A>G	uc001giq.3	+	18	2234	c.1918A>G	c.(1918-1920)AGA>GGA	p.R640G	C1orf9_uc010pmm.1_Missense_Mutation_p.R640G|C1orf9_uc009wwd.2_Missense_Mutation_p.R596G|C1orf9_uc010pmn.1_Intron|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	640					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		GTGTTCAGTTAGAGTTGCTCT	0.393												
SLC9A11	284525	broad.mit.edu	37	1	173499145	173499145	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:173499145G>A	uc001giz.2	-	18	2635	c.2212C>T	c.(2212-2214)CGC>TGC	p.R738C	SLC9A11_uc009wwe.2_Missense_Mutation_p.R296C|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	738					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AAGCTGAGGCGCTTTTTGATC	0.323												
KLHL20	27252	broad.mit.edu	37	1	173726131	173726131	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:173726131T>C	uc001gjc.2	+	7	1163	c.984T>C	c.(982-984)AGT>AGC	p.S328S	KLHL20_uc010pmr.1_Silent_p.S139S|KLHL20_uc009wwf.2_Silent_p.S310S	NM_014458	NP_055273	Q9Y2M5	KLH20_HUMAN	kelch-like 20	328	Kelch 1.				cytoskeleton organization|negative regulation of apoptosis|proteasomal ubiquitin-dependent protein catabolic process|response to interferon-alpha	actin cytoskeleton|cell surface|Cul3-RING ubiquitin ligase complex|Golgi apparatus|perinuclear region of cytoplasm|PML body	actin binding|interferon-gamma binding|ubiquitin-protein ligase activity			ovary(1)	1						GTTGGTGCAGTGGAGATGCCA	0.448												
CACYBP	27101	broad.mit.edu	37	1	174975919	174975919	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:174975919A>G	uc001gkj.1	+	3	699	c.274A>G	c.(274-276)ACC>GCC	p.T92A	CACYBP_uc001gki.1_Missense_Mutation_p.T49A	NM_014412	NP_055227	Q9HB71	CYBP_HUMAN	calcyclin binding protein isoform 1	92	Interaction with SKP1.|CS.					beta-catenin destruction complex	protein homodimerization activity				0						AATCTACATTACCTTAACTGG	0.403												
MRPS14	63931	broad.mit.edu	37	1	174987603	174987603	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:174987603A>G	uc001gkk.2	-	2	172	c.155T>C	c.(154-156)CTA>CCA	p.L52P	MRPS14_uc009wwr.2_Missense_Mutation_p.L37P	NM_022100	NP_071383	O60783	RT14_HUMAN	mitochondrial ribosomal protein S14	52					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0						ATTAATACGTAGCCTCTCATC	0.408												
TNN	63923	broad.mit.edu	37	1	175087805	175087805	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:175087805C>T	uc001gkl.1	+	11	2608	c.2495C>T	c.(2494-2496)ACG>ATG	p.T832M		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	832	Fibronectin type-III 7.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GTGCACTACACGTCTGCCAAC	0.612												
TNN	63923	broad.mit.edu	37	1	175113675	175113675	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:175113675A>G	uc001gkl.1	+	18	3861	c.3748A>G	c.(3748-3750)AAG>GAG	p.K1250E		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1250	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TGGGGAGACCAAGCACAGTGA	0.527												
TNR	7143	broad.mit.edu	37	1	175299227	175299227	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:175299227C>T	uc001gkp.1	-	19	3857	c.3776G>A	c.(3775-3777)AGC>AAC	p.S1259N	TNR_uc009wwu.1_Missense_Mutation_p.S1259N	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1259	Fibrinogen C-terminal.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GCCGTTGTAGCTTCCTATGCG	0.597												
TNR	7143	broad.mit.edu	37	1	175299353	175299353	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:175299353C>A	uc001gkp.1	-	19	3731	c.3650G>T	c.(3649-3651)AGG>ATG	p.R1217M	TNR_uc009wwu.1_Missense_Mutation_p.R1217M	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1217	Fibrinogen C-terminal.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GGATGTGATCCTGTGTATATT	0.572												
RFWD2	64326	broad.mit.edu	37	1	176085813	176085813	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:176085813T>C	uc001gku.1	-	9	1229	c.973A>G	c.(973-975)ATT>GTT	p.I325V	RFWD2_uc001gkv.1_Missense_Mutation_p.I301V|RFWD2_uc001gkw.1_Missense_Mutation_p.I85V|RFWD2_uc009wwv.2_Missense_Mutation_p.I85V|RFWD2_uc001gkt.1_Missense_Mutation_p.I164V	NM_022457	NP_071902	Q8NHY2	RFWD2_HUMAN	ring finger and WD repeat domain 2 isoform a	325					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	centrosome|cytosol|focal adhesion|nuclear speck	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						GAATCAATAATACTACTGCAA	0.299												
RFWD2	64326	broad.mit.edu	37	1	176145092	176145092	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:176145092A>G	uc001gku.1	-	3	775	c.519T>C	c.(517-519)TGT>TGC	p.C173C	RFWD2_uc001gkv.1_Silent_p.C173C|RFWD2_uc001gkw.1_5'UTR|RFWD2_uc001gkt.1_Silent_p.C32C	NM_022457	NP_071902	Q8NHY2	RFWD2_HUMAN	ring finger and WD repeat domain 2 isoform a	173	RING-type.				DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	centrosome|cytosol|focal adhesion|nuclear speck	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						CAACATAGTTACACTTGGGAC	0.323												
PAPPA2	60676	broad.mit.edu	37	1	176563808	176563808	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:176563808C>T	uc001gkz.2	+	3	2232	c.1068C>T	c.(1066-1068)CAC>CAT	p.H356H	PAPPA2_uc001gky.1_Silent_p.H356H|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	356					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGATTAGCCACAGTCGCTACC	0.577												
FAM5B	57795	broad.mit.edu	37	1	177245384	177245384	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:177245384G>A	uc001glf.2	+	6	1138	c.826G>A	c.(826-828)GCA>ACA	p.A276T	FAM5B_uc010pna.1_Missense_Mutation_p.A26T|FAM5B_uc001glg.2_Missense_Mutation_p.A171T	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	276						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TGTAGCTGCAGCACTCAGCTA	0.562												
FAM5B	57795	broad.mit.edu	37	1	177249772	177249772	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:177249772C>G	uc001glf.2	+	8	1772	c.1460C>G	c.(1459-1461)GCC>GGC	p.A487G	FAM5B_uc001glg.2_Missense_Mutation_p.A382G	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	487						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TATGTGCTGGCCCAGGGGCTG	0.632												
TDRD5	163589	broad.mit.edu	37	1	179561744	179561744	+	Translation_Start_Site	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:179561744G>T	uc001gnf.1	+	2	244	c.-6G>T	c.(-8--4)TAGGG>TATGG		TDRD5_uc010pnp.1_Translation_Start_Site|uc001gne.2_5'Flank|uc010pno.1_5'Flank	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5						DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						CAGTCCTGTAGGGCACAATGT	0.438												
CACNA1E	777	broad.mit.edu	37	1	181727985	181727985	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:181727985T>C	uc001gow.2	+	32	4751	c.4586T>C	c.(4585-4587)GTC>GCC	p.V1529A	CACNA1E_uc009wxs.2_Missense_Mutation_p.V1417A|CACNA1E_uc001gox.1_Missense_Mutation_p.V755A|CACNA1E_uc009wxt.2_Missense_Mutation_p.V755A	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1529	Helical; Name=S2 of repeat IV.|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GTCCTGAAGGTCATCGCTTTT	0.502												
DHX9	1660	broad.mit.edu	37	1	182836115	182836115	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:182836115A>G	uc001gpr.2	+	14	1657	c.1494A>G	c.(1492-1494)TTA>TTG	p.L498L	DHX9_uc001gps.2_Silent_p.L284L	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	498	Helicase ATP-binding.				CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						TGAGAAAATTAGAAGCAGGCA	0.303												
LAMC2	3918	broad.mit.edu	37	1	183201887	183201887	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:183201887T>C	uc001gqa.2	+	14	2429	c.2115T>C	c.(2113-2115)GTT>GTC	p.V705V	LAMC2_uc001gpz.3_Silent_p.V705V|LAMC2_uc010poa.1_Silent_p.V405V	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	705	Potential.|Domain II and I.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						TGGAAAGAGTTCGGGCTCTGG	0.547												
RGL1	23179	broad.mit.edu	37	1	183881241	183881241	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:183881241A>G	uc001gqo.2	+	15	1745	c.1588A>G	c.(1588-1590)ACC>GCC	p.T530A	RGL1_uc010pof.1_Missense_Mutation_p.T335A|RGL1_uc001gqm.2_Missense_Mutation_p.T565A|RGL1_uc010pog.1_Missense_Mutation_p.T528A|RGL1_uc010poh.1_Missense_Mutation_p.T528A|RGL1_uc010poi.1_Missense_Mutation_p.T501A	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	530					cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						TGACATGATCACCAGTCCCAC	0.488												
RGL1	23179	broad.mit.edu	37	1	183885723	183885723	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:183885723C>T	uc001gqo.2	+	16	2049	c.1892C>T	c.(1891-1893)ACG>ATG	p.T631M	RGL1_uc001gqm.2_Missense_Mutation_p.T666M|RGL1_uc010pog.1_Missense_Mutation_p.T629M|RGL1_uc010poh.1_Missense_Mutation_p.T629M|RGL1_uc010poi.1_Missense_Mutation_p.T602M	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	631					cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						GTCTCGGTGACGTCCATTACC	0.502												
C1orf26	54823	broad.mit.edu	37	1	185137497	185137497	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:185137497A>G	uc001grg.3	+	4	305	c.191A>G	c.(190-192)TAC>TGC	p.Y64C	C1orf26_uc001grh.3_Missense_Mutation_p.Y64C	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	64											0						GATGTTCTGTACTATAATATA	0.259												
HMCN1	83872	broad.mit.edu	37	1	185962440	185962440	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:185962440T>C	uc001grq.1	+	23	3733	c.3504T>C	c.(3502-3504)CAT>CAC	p.H1168H	HMCN1_uc001grr.1_Silent_p.H509H	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1168					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TAAATGTCCATGGTGAGTCTT	0.388												
PRG4	10216	broad.mit.edu	37	1	186281960	186281960	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:186281960A>G	uc001gru.3	+	12	4102	c.4051A>G	c.(4051-4053)ACC>GCC	p.T1351A	PRG4_uc001grt.3_Missense_Mutation_p.T1310A|PRG4_uc009wyl.2_Missense_Mutation_p.T1258A|PRG4_uc009wym.2_Missense_Mutation_p.T1217A|PRG4_uc010poo.1_RNA|TPR_uc001grv.2_3'UTR	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	1351					cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						AAATGTGGTTACCTCAGCTAT	0.388												
TPR	7175	broad.mit.edu	37	1	186313637	186313637	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:186313637A>G	uc001grv.2	-	25	3584	c.3287T>C	c.(3286-3288)CTA>CCA	p.L1096P		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1096	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		CGCAGCTTGTAGAGCTTCAAC	0.403			T	NTRK1	papillary thyroid							
FAM5C	339479	broad.mit.edu	37	1	190067644	190067644	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:190067644T>C	uc001gse.1	-	8	2037	c.1805A>G	c.(1804-1806)GAC>GGC	p.D602G	FAM5C_uc010pot.1_Missense_Mutation_p.D500G	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	602						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					CAGGGGTAGGTCCAACTTAGT	0.468												
RGS1	5996	broad.mit.edu	37	1	192547467	192547467	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:192547467A>G	uc001gsi.1	+	4	462	c.396A>G	c.(394-396)AAA>AAG	p.K132K	RGS1_uc010pou.1_Silent_p.K132K	NM_002922	NP_002913	Q08116	RGS1_HUMAN	regulator of G-protein signalling 1	132	RGS.				immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of signal transduction	cytoplasm|plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity				0		Breast(1374;0.188)				TGCCCTGTAAAGCAGAAGAGA	0.368												
B3GALT2	8707	broad.mit.edu	37	1	193149827	193149827	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:193149827T>C	uc001gtc.3	-	2	1581	c.866A>G	c.(865-867)AAT>AGT	p.N289S	CDC73_uc001gtb.2_Intron	NM_003783	NP_003774	O43825	B3GT2_HUMAN	UDP-Gal:betaGlcNAc beta	289	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)	1						TTTGTTTCGATTGGGTGCATA	0.413												
CFHR2	3080	broad.mit.edu	37	1	196928105	196928105	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:196928105A>G	uc001gtq.1	+	5	785	c.708A>G	c.(706-708)ATA>ATG	p.I236M	CFHR2_uc001gtr.1_Missense_Mutation_p.I112M	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	236	Sushi 4.					extracellular region				skin(2)|ovary(1)	3						CAGGTGACATAGTTGAATTTG	0.313												
F13B	2165	broad.mit.edu	37	1	197026524	197026524	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:197026524G>A	uc001gtt.1	-	6	921	c.877C>T	c.(877-879)CGT>TGT	p.R293C		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	293	Sushi 5.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TCTCCATGACGATAAGTTGTT	0.368												
ASPM	259266	broad.mit.edu	37	1	197091116	197091116	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:197091116T>C	uc001gtu.2	-	16	4056	c.3799A>G	c.(3799-3801)ATA>GTA	p.I1267V	ASPM_uc001gtv.2_Missense_Mutation_p.I1267V|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1267					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GCAGCTCTTATTTCTTTACGA	0.333												
ASPM	259266	broad.mit.edu	37	1	197097731	197097731	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:197097731C>T	uc001gtu.2	-	10	3082	c.2825G>A	c.(2824-2826)CGT>CAT	p.R942H	ASPM_uc001gtv.2_Missense_Mutation_p.R942H|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	942	CH 1.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GCCAAGGTGACGGGAAAGGTC	0.378												
ZBTB41	360023	broad.mit.edu	37	1	197157461	197157461	+	Missense_Mutation	SNP	G	G	A	rs146939360	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:197157461G>A	uc001gtx.1	-	4	1576	c.1507C>T	c.(1507-1509)CGG>TGG	p.R503W	ZBTB41_uc009wyz.1_RNA	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	503	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						CGAGCAAACCGTGATTTAAAA	0.348												
ZBTB41	360023	broad.mit.edu	37	1	197168674	197168674	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:197168674C>T	uc001gtx.1	-	1	999	c.930G>A	c.(928-930)GAG>GAA	p.E310E	ZBTB41_uc009wyz.1_RNA|CRB1_uc010poz.1_5'Flank	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	310					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						ACATCTCCTCCTCTAGCTCAT	0.378												
ZBTB41	360023	broad.mit.edu	37	1	197169174	197169174	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:197169174A>G	uc001gtx.1	-	1	499	c.430T>C	c.(430-432)TAC>CAC	p.Y144H	ZBTB41_uc009wyz.1_RNA|CRB1_uc010poz.1_5'Flank	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	144	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						TCTGATGTGTAAAGAAATTCA	0.333												
PTPRC	5788	broad.mit.edu	37	1	198668766	198668766	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:198668766G>A	uc001gur.1	+	5	546	c.366G>A	c.(364-366)ACG>ACA	p.T122T	PTPRC_uc001gus.1_Silent_p.T122T|PTPRC_uc001gut.1_Intron|PTPRC_uc009wze.1_Silent_p.T58T|PTPRC_uc009wzf.1_Silent_p.T58T|PTPRC_uc010ppg.1_Silent_p.T58T|PTPRC_uc001guu.1_Silent_p.T165T|PTPRC_uc001guv.1_RNA|PTPRC_uc001guw.1_RNA	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	122	Extracellular (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						GAACTGACACGCAGACATTCA	0.527											OREG0014061	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
PTPRC	5788	broad.mit.edu	37	1	198668804	198668804	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:198668804A>G	uc001gur.1	+	5	584	c.404A>G	c.(403-405)AAC>AGC	p.N135S	PTPRC_uc001gus.1_Missense_Mutation_p.N135S|PTPRC_uc001gut.1_Intron|PTPRC_uc009wze.1_Missense_Mutation_p.N71S|PTPRC_uc009wzf.1_Missense_Mutation_p.N71S|PTPRC_uc010ppg.1_Missense_Mutation_p.N71S|PTPRC_uc001guu.1_Missense_Mutation_p.N178S|PTPRC_uc001guv.1_RNA|PTPRC_uc001guw.1_RNA	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	135	Extracellular (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						GCAAAACTCAACCCTACCCCA	0.527											OREG0014061	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
PTPRC	5788	broad.mit.edu	37	1	198687384	198687384	+	Missense_Mutation	SNP	G	G	A	rs144856406	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:198687384G>A	uc001gur.1	+	14	1786	c.1606G>A	c.(1606-1608)GAT>AAT	p.D536N	PTPRC_uc001gus.1_Missense_Mutation_p.D488N|PTPRC_uc001gut.1_Missense_Mutation_p.D375N|PTPRC_uc009wzf.1_Missense_Mutation_p.D424N|PTPRC_uc010ppg.1_Missense_Mutation_p.D472N	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	536	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						TAAGAATTGCGATTTCCGTGT	0.388												
KIF14	9928	broad.mit.edu	37	1	200562825	200562825	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:200562825T>C	uc010ppk.1	-	15	3061	c.2622A>G	c.(2620-2622)AAA>AAG	p.K874K	KIF14_uc010ppj.1_Silent_p.K383K	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	874	FHA.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						CCAAAATATGTTTTCCATTTA	0.264												
CAMSAP1L1	23271	broad.mit.edu	37	1	200818150	200818150	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:200818150G>A	uc001gvl.2	+	12	2556	c.2286G>A	c.(2284-2286)GTG>GTA	p.V762V	CAMSAP1L1_uc001gvk.2_Silent_p.V751V|CAMSAP1L1_uc001gvm.2_Silent_p.V735V	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	762						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CTGAAATGGTGCATCTTAGGA	0.448												
CACNA1S	779	broad.mit.edu	37	1	201052326	201052326	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:201052326G>A	uc001gvv.2	-	10	1584	c.1357C>T	c.(1357-1359)CAC>TAC	p.H453Y		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	453	Extracellular (Potential).|II.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGGTTGTGGTGCTCTGAGGCG	0.547												
NAV1	89796	broad.mit.edu	37	1	201617978	201617978	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:201617978C>T	uc001gwu.2	+	1	529	c.182C>T	c.(181-183)GCG>GTG	p.A61V		NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	61					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						AAGGCCAGCGCGGCTGAGCTG	0.393												
NAV1	89796	broad.mit.edu	37	1	201751603	201751603	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:201751603G>A	uc001gwu.2	+	6	2310	c.1963G>A	c.(1963-1965)GCA>ACA	p.A655T	NAV1_uc001gwv.1_Missense_Mutation_p.A163T|NAV1_uc001gww.1_Missense_Mutation_p.A264T|NAV1_uc001gwx.2_Missense_Mutation_p.A264T|NAV1_uc001gwy.1_Missense_Mutation_p.A36T	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	655					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						TTCCAACAGTGCAGAGCCAGG	0.572												
ELF3	1999	broad.mit.edu	37	1	201983146	201983146	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:201983146C>T	uc001gxg.3	+	7	4187	c.995C>T	c.(994-996)GCC>GTC	p.A332V	ELF3_uc001gxi.3_Missense_Mutation_p.A332V|ELF3_uc001gxh.3_Missense_Mutation_p.A332V	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	332	ETS.				epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						CTGAGCCGGGCCATGAGGTGA	0.597												
PTPN7	5778	broad.mit.edu	37	1	202123315	202123315	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:202123315T>G	uc001gxm.1	-	6	736	c.605A>C	c.(604-606)GAG>GCG	p.E202A	PTPN7_uc001gxl.1_Missense_Mutation_p.E241A|PTPN7_uc001gxn.1_Missense_Mutation_p.E202A|PTPN7_uc010ppv.1_Missense_Mutation_p.E21A|PTPN7_uc010ppw.1_Missense_Mutation_p.E150A|PTPN7_uc010ppx.1_Missense_Mutation_p.E276A|PTPN7_uc010ppy.1_Intron|PTPN7_uc001gxo.1_Missense_Mutation_p.E154A	NM_002832	NP_002823	P35236	PTN7_HUMAN	protein tyrosine phosphatase, non-receptor type	202	Tyrosine-protein phosphatase.					cytosol|internal side of plasma membrane	protein binding|protein tyrosine phosphatase activity			skin(1)	1						GCCTCCTACCTCCTTGCCCTC	0.587												
KDM5B	10765	broad.mit.edu	37	1	202700079	202700079	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:202700079C>T	uc001gyf.2	-	25	4250	c.4134G>A	c.(4132-4134)CAG>CAA	p.Q1378Q	KDM5B_uc009xag.2_Silent_p.Q1414Q|KDM5B_uc001gyg.1_Silent_p.Q1220Q	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1378					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						GGTCAGTCTGCTGAGCAGGGC	0.517												
KDM5B	10765	broad.mit.edu	37	1	202702811	202702811	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:202702811A>G	uc001gyf.2	-	23	3743	c.3627T>C	c.(3625-3627)ATT>ATC	p.I1209I	KDM5B_uc009xag.2_Silent_p.I1245I|KDM5B_uc001gyg.1_Silent_p.I1051I	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1209	PHD-type 2.				negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						GGCCCTGTGAAATACTGGGTA	0.522												
PPFIA4	8497	broad.mit.edu	37	1	203012612	203012612	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:203012612C>T	uc009xaj.2	+	7	763	c.763C>T	c.(763-765)CGG>TGG	p.R255W	PPFIA4_uc010pqf.1_5'Flank			O75335	LIPA4_HUMAN	SubName: Full=Liprin alpha4;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						GAAAGCAGAACGGAATAACAC	0.542												
PPFIA4	8497	broad.mit.edu	37	1	203024745	203024745	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:203024745A>G	uc001gyz.2	+	3	1090	c.497A>G	c.(496-498)AAG>AGG	p.K166R	PPFIA4_uc009xaj.2_Missense_Mutation_p.K797R|PPFIA4_uc010pqf.1_Missense_Mutation_p.K379R|PPFIA4_uc001gza.2_Missense_Mutation_p.K166R|PPFIA4_uc001gzb.1_5'Flank	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	166					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						TCCACACCTAAGCTCACCTCC	0.662												
FMOD	2331	broad.mit.edu	37	1	203317279	203317279	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:203317279A>G	uc001gzr.2	-	2	256	c.120T>C	c.(118-120)GAT>GAC	p.D40D	FMOD_uc010pqi.1_RNA	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	40					transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)			GGTCATAGGGATCGTAGTAGG	0.592												
PLEKHA6	22874	broad.mit.edu	37	1	204236645	204236645	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:204236645G>A	uc001hau.2	-	5	555	c.238C>T	c.(238-240)CGC>TGC	p.R80C		NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	80	PH.									ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			ACGAACCAGCGCTTGTTCCAC	0.597												
PIK3C2B	5287	broad.mit.edu	37	1	204418333	204418333	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:204418333G>A	uc001haw.2	-	15	2805	c.2326C>T	c.(2326-2328)CCA>TCA	p.P776S	PIK3C2B_uc010pqv.1_Missense_Mutation_p.P776S	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	776					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			ACACTGTCTGGCTGGTGGAAA	0.547												
NFASC	23114	broad.mit.edu	37	1	204937448	204937448	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:204937448C>T	uc001hbj.2	+	9	1106	c.778C>T	c.(778-780)CGT>TGT	p.R260C	NFASC_uc001hbh.2_Missense_Mutation_p.R260C|NFASC_uc010pqz.1_Missense_Mutation_p.R254C|NFASC_uc010pra.1_Missense_Mutation_p.R271C|NFASC_uc001hbi.2_Missense_Mutation_p.R271C|NFASC_uc009xbg.1_Missense_Mutation_p.R344C|NFASC_uc010prb.1_Missense_Mutation_p.R271C|NFASC_uc010prc.1_5'UTR|NFASC_uc001hbk.1_Missense_Mutation_p.R81C	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	260	Extracellular (Potential).|Ig-like C2-type 3.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GATGGTGCTTCGTGGCATGGA	0.582												
NFASC	23114	broad.mit.edu	37	1	204945914	204945914	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:204945914A>G	uc001hbj.2	+	16	2150	c.1822A>G	c.(1822-1824)ACC>GCC	p.T608A	NFASC_uc001hbh.2_Missense_Mutation_p.T608A|NFASC_uc010pqz.1_Missense_Mutation_p.T602A|NFASC_uc010pra.1_Missense_Mutation_p.T619A|NFASC_uc001hbi.2_Missense_Mutation_p.T619A|NFASC_uc010prb.1_Missense_Mutation_p.T619A|NFASC_uc010prc.1_Missense_Mutation_p.T175A|NFASC_uc001hbk.1_Missense_Mutation_p.T429A	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	608	Extracellular (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GGCCTACCTCACCGTGCTAGG	0.652												
TMEM81	388730	broad.mit.edu	37	1	205052683	205052683	+	Nonstop_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:205052683A>G	uc001hbt.2	-	1	906	c.766T>C	c.(766-768)TGA>CGA	p.*256R		NM_203376	NP_976310	Q6P7N7	TMM81_HUMAN	transmembrane protein 81 precursor	256						integral to membrane					0	all_cancers(21;0.144)|Breast(84;0.0437)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			TGAAGCTGTCACTGCTGCAGG	0.552												
RBBP5	5929	broad.mit.edu	37	1	205074295	205074295	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:205074295A>G	uc001hbu.1	-	4	350	c.220T>C	c.(220-222)TGG>CGG	p.W74R	RBBP5_uc010prd.1_Missense_Mutation_p.W109R|RBBP5_uc001hbv.1_Missense_Mutation_p.W74R|RBBP5_uc010pre.1_5'UTR	NM_005057	NP_005048	Q15291	RBBP5_HUMAN	retinoblastoma binding protein 5	74	WD 2.				histone H3-K4 methylation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription, DNA-dependent	MLL1 complex|Set1C/COMPASS complex	methylated histone residue binding|transcription regulatory region DNA binding			lung(1)	1	Breast(84;0.0505)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			TCTCGGCTCCAGCTGAGGAAA	0.433												
KLHDC8A	55220	broad.mit.edu	37	1	205312636	205312636	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:205312636C>T	uc001hcf.1	-	2	665	c.97G>A	c.(97-99)GTC>ATC	p.V33I	KLHDC8A_uc010prg.1_Intron|KLHDC8A_uc001hcg.1_Missense_Mutation_p.V33I	NM_018203	NP_060673	Q8IYD2	KLD8A_HUMAN	kelch domain containing 8A	33	Kelch 2.									ovary(1)	1	Breast(84;0.23)		BRCA - Breast invasive adenocarcinoma(75;0.117)			ATGGCATAGACCTGGCCCCCG	0.677												
RAB7L1	8934	broad.mit.edu	37	1	205739514	205739514	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:205739514A>G	uc001hdf.3	-	6	908	c.568T>C	c.(568-570)TAC>CAC	p.Y190H	RAB7L1_uc009xbp.2_Missense_Mutation_p.Y118H|RAB7L1_uc001hde.3_Missense_Mutation_p.Y190H|RAB7L1_uc010prr.1_Missense_Mutation_p.Y166H|RAB7L1_uc009xbq.2_RNA	NM_003929	NP_003920	O14966	RAB7L_HUMAN	RAB7, member RAS oncogene family-like 1 isoform	190					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding			ovary(1)	1	Breast(84;0.0799)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			AGATTGATGTAGTCCCCTTGG	0.418												
SRGAP2	23380	broad.mit.edu	37	1	206566999	206566999	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:206566999A>G	uc001hdy.2	+	4	872	c.539A>G	c.(538-540)TAC>TGC	p.Y180C	SRGAP2_uc009xbt.2_Missense_Mutation_p.Y104C|SRGAP2_uc010prt.1_Missense_Mutation_p.Y104C|SRGAP2_uc001hdx.2_Missense_Mutation_p.Y180C|SRGAP2_uc010pru.1_Missense_Mutation_p.Y104C|SRGAP2_uc010prv.1_Missense_Mutation_p.Y104C	NM_015326	NP_056141	O75044	FNBP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 2	267					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding				0	Breast(84;0.137)					GTCTTCAAGTACTACATCCAT	0.478												
CR2	1380	broad.mit.edu	37	1	207639972	207639972	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:207639972A>G	uc001hfw.2	+	2	254	c.160A>G	c.(160-162)ACC>GCC	p.T54A	CR2_uc001hfv.2_Missense_Mutation_p.T54A|CR2_uc009xch.2_Missense_Mutation_p.T54A	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	54	Sushi 1.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						TTGTTCAGGTACCTTCCGCCT	0.413												
CR1	1378	broad.mit.edu	37	1	207679344	207679344	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:207679344T>C	uc001hfy.2	+	2	357	c.217T>C	c.(217-219)TGC>CGC	p.C73R	CR1_uc009xcl.1_Missense_Mutation_p.C73R|CR1_uc001hfx.2_Missense_Mutation_p.C73R|CR1_uc010psg.1_Missense_Mutation_p.C73R|CR1_uc009xcj.1_Missense_Mutation_p.C73R|CR1_uc009xck.1_Missense_Mutation_p.C73R	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	73	Sushi 1.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GAACTATGAATGCCGCCCTGG	0.473												
CR1L	1379	broad.mit.edu	37	1	207867785	207867785	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:207867785C>T	uc001hga.3	+	5	672	c.551C>T	c.(550-552)ACC>ATC	p.T184I	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	184	Sushi 3.					cytoplasm|extracellular region|membrane					0						TCAGTGGTGACCTACCACTGC	0.488												
CR1L	1379	broad.mit.edu	37	1	207867788	207867788	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:207867788A>G	uc001hga.3	+	5	675	c.554A>G	c.(553-555)TAC>TGC	p.Y185C	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	185	Sushi 3.					cytoplasm|extracellular region|membrane					0						GTGGTGACCTACCACTGCAAT	0.488												
CD46	4179	broad.mit.edu	37	1	207940424	207940424	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:207940424A>G	uc001hgc.2	+	6	896	c.740A>G	c.(739-741)TAC>TGC	p.Y247C	CD46_uc001hgd.2_Missense_Mutation_p.Y247C|CD46_uc001hge.2_Missense_Mutation_p.Y247C|CD46_uc001hgf.2_Missense_Mutation_p.Y247C|CD46_uc001hgg.2_Missense_Mutation_p.Y247C|CD46_uc001hgh.2_Missense_Mutation_p.Y247C|CD46_uc001hgi.2_Missense_Mutation_p.Y247C|CD46_uc001hgj.2_Missense_Mutation_p.Y247C|CD46_uc001hgk.2_Missense_Mutation_p.Y247C|CD46_uc001hgl.2_Missense_Mutation_p.Y247C|CD46_uc001hgm.2_Missense_Mutation_p.Y247C|CD46_uc001hgn.2_Missense_Mutation_p.Y247C|CD46_uc001hgo.2_Missense_Mutation_p.Y247C|CD46_uc001hgp.2_Missense_Mutation_p.Y247C	NM_002389	NP_002380	P15529	MCP_HUMAN	CD46 antigen, complement regulatory protein	247	Extracellular (Potential).|Sushi 4.				complement activation, classical pathway|innate immune response|interspecies interaction between organisms|single fertilization	inner acrosomal membrane|integral to plasma membrane	protein binding|receptor activity			large_intestine(2)|lung(1)|central_nervous_system(1)	4						AAAAAATTTTACTACAAAGCA	0.378												
PLXNA2	5362	broad.mit.edu	37	1	208206749	208206749	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:208206749T>C	uc001hgz.2	-	28	5728	c.4970A>G	c.(4969-4971)AAC>AGC	p.N1657S		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1657	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		GTGGTCATGGTTCTTCACCAG	0.622												
LAMB3	3914	broad.mit.edu	37	1	209803132	209803132	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:209803132T>A	uc001hhg.2	-	9	1472	c.1082A>T	c.(1081-1083)CAC>CTC	p.H361L	LAMB3_uc009xco.2_Missense_Mutation_p.H361L|LAMB3_uc001hhh.2_Missense_Mutation_p.H361L|LAMB3_uc010psl.1_RNA	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	361	Laminin EGF-like 2.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		CCGGAAATAGTGCAGCTGACA	0.592												
IRF6	3664	broad.mit.edu	37	1	209964008	209964008	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:209964008T>C	uc001hhq.1	-	7	1155	c.892A>G	c.(892-894)ATG>GTG	p.M298V	IRF6_uc010psm.1_Missense_Mutation_p.M203V|IRF6_uc009xct.1_Missense_Mutation_p.M298V	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	298					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		CCTCTGTCCATGACGTCCAGC	0.547										HNSCC(57;0.16)		
IRF6	3664	broad.mit.edu	37	1	209964012	209964012	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:209964012G>A	uc001hhq.1	-	7	1151	c.888C>T	c.(886-888)GAC>GAT	p.D296D	IRF6_uc010psm.1_Silent_p.D201D|IRF6_uc009xct.1_Silent_p.D296D	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	296			FTSKLLD -> L (in VWS).		cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		TGTCCATGACGTCCAGCAGCT	0.547										HNSCC(57;0.16)		
IRF6	3664	broad.mit.edu	37	1	209964020	209964020	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:209964020G>A	uc001hhq.1	-	7	1143	c.880C>T	c.(880-882)CTG>TTG	p.L294L	IRF6_uc010psm.1_Silent_p.L199L|IRF6_uc009xct.1_Silent_p.L294L	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	294			FTSKLLD -> L (in VWS).|L -> P (in VWS).		cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		ACGTCCAGCAGCTTGCTAGTG	0.547										HNSCC(57;0.16)		
INTS7	25896	broad.mit.edu	37	1	212142038	212142038	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:212142038T>C	uc001hiw.1	-	14	1932	c.1827A>G	c.(1825-1827)ACA>ACG	p.T609T	INTS7_uc009xdb.1_Silent_p.T609T|INTS7_uc001hix.1_Silent_p.T485T|INTS7_uc001hiy.1_Silent_p.T609T|INTS7_uc010pta.1_Silent_p.T560T	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	609					snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		GATTCAGTGGTGTACTAGCTG	0.363												
INTS7	25896	broad.mit.edu	37	1	212161324	212161324	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:212161324G>A	uc001hiw.1	-	8	1006	c.901C>T	c.(901-903)CAG>TAG	p.Q301*	INTS7_uc009xdb.1_Nonsense_Mutation_p.Q301*|INTS7_uc001hix.1_Nonsense_Mutation_p.Q177*|INTS7_uc001hiy.1_Nonsense_Mutation_p.Q301*|INTS7_uc010pta.1_Nonsense_Mutation_p.Q252*	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	301					snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		TAAGGAGTCTGGAGGGCACAC	0.388												
KCNK2	3776	broad.mit.edu	37	1	215345490	215345490	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:215345490A>G	uc001hkq.2	+	5	956	c.787A>G	c.(787-789)ACT>GCT	p.T263A	KCNK2_uc001hko.2_Missense_Mutation_p.T259A|KCNK2_uc009xdm.2_Intron|KCNK2_uc001hkp.2_RNA|KCNK2_uc010pua.1_RNA|KCNK2_uc001hkr.3_Missense_Mutation_p.T248A	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	263							outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	TGTGGTTATCACTCTAACAAC	0.408												
USH2A	7399	broad.mit.edu	37	1	215802205	215802205	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:215802205A>G	uc001hku.1	-	71	15857	c.15470T>C	c.(15469-15471)TTG>TCG	p.L5157S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	5157	Cytoplasmic (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTTGTCCATCAAGACTTTCTT	0.498										HNSCC(13;0.011)		
USH2A	7399	broad.mit.edu	37	1	215953368	215953368	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:215953368T>C	uc001hku.1	-	55	11143	c.10756A>G	c.(10756-10758)ACC>GCC	p.T3586A		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3586	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACTCCTTGGGTAGTAGCTGCA	0.458										HNSCC(13;0.011)		
USH2A	7399	broad.mit.edu	37	1	216405425	216405425	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:216405425T>C	uc001hku.1	-	14	3250	c.2863A>G	c.(2863-2865)ACA>GCA	p.T955A	USH2A_uc001hkv.2_Missense_Mutation_p.T955A	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	955	Extracellular (Potential).|Laminin EGF-like 9.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GCACCAGTTGTATGGCATGAG	0.408										HNSCC(13;0.011)		
USH2A	7399	broad.mit.edu	37	1	216497021	216497021	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:216497021G>A	uc001hku.1	-	8	1732	c.1345C>T	c.(1345-1347)CGT>TGT	p.R449C	USH2A_uc001hkv.2_Missense_Mutation_p.R449C	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	449	Laminin N-terminal.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACATTGCCACGGGAATATGGA	0.348										HNSCC(13;0.011)		
ESRRG	2104	broad.mit.edu	37	1	216850574	216850574	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:216850574T>C	uc001hkw.1	-	2	482	c.316A>G	c.(316-318)AGC>GGC	p.S106G	ESRRG_uc001hky.1_Missense_Mutation_p.S83G|ESRRG_uc009xdp.1_Missense_Mutation_p.S83G|ESRRG_uc001hkz.1_Missense_Mutation_p.S83G|ESRRG_uc010puc.1_Missense_Mutation_p.S83G|ESRRG_uc001hla.1_Missense_Mutation_p.S83G|ESRRG_uc001hlb.1_Missense_Mutation_p.S83G|ESRRG_uc010pud.1_Intron|ESRRG_uc001hlc.1_Missense_Mutation_p.S83G|ESRRG_uc001hld.1_Missense_Mutation_p.S83G|ESRRG_uc001hkx.1_Missense_Mutation_p.S111G|ESRRG_uc009xdo.1_Missense_Mutation_p.S83G|ESRRG_uc001hle.1_Missense_Mutation_p.S83G	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	106					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	ACAATGGTGCTGGAGCAGTCA	0.517												
GPATCH2	55105	broad.mit.edu	37	1	217783709	217783709	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:217783709A>G	uc001hlf.1	-	5	1148	c.1052T>C	c.(1051-1053)ATG>ACG	p.M351T	GPATCH2_uc001hlg.3_Missense_Mutation_p.M351T	NM_018040	NP_060510	Q9NW75	GPTC2_HUMAN	G patch domain containing 2	351						intracellular	nucleic acid binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0397)|all cancers(67;0.0744)|GBM - Glioblastoma multiforme(131;0.0872)		CTTTGAAGACATTCCATGAAG	0.348												
TGFB2	7042	broad.mit.edu	37	1	218614599	218614599	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:218614599C>T	uc001hlm.2	+	7	1793	c.1140C>T	c.(1138-1140)TGC>TGT	p.C380C	TGFB2_uc001hln.2_Silent_p.C408C|TGFB2_uc010pue.1_RNA|TGFB2_uc001hlo.2_RNA	NM_003238	NP_003229	P61812	TGFB2_HUMAN	transforming growth factor, beta 2 isoform 2	380					activation of protein kinase activity|angiogenesis|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cardioblast differentiation|catagen|cell cycle arrest|cell death|cell growth|cell-cell junction organization|cell-cell signaling|collagen fibril organization|dopamine biosynthetic process|embryonic digestive tract development|eye development|glial cell migration|hair follicle morphogenesis|hemopoiesis|menstrual cycle phase|negative regulation of alkaline phosphatase activity|negative regulation of cell growth|negative regulation of epithelial cell proliferation|negative regulation of immune response|negative regulation of macrophage cytokine production|neuron development|neutrophil chemotaxis|odontogenesis|pathway-restricted SMAD protein phosphorylation|platelet activation|platelet degranulation|positive regulation of cardioblast differentiation|positive regulation of catagen|positive regulation of cell adhesion mediated by integrin|positive regulation of cell cycle|positive regulation of cell division|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of epithelial cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of heart contraction|positive regulation of immune response|positive regulation of integrin biosynthetic process|positive regulation of neuron apoptosis|positive regulation of ossification|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein secretion|positive regulation of stress-activated MAPK cascade|regulation of transforming growth factor-beta2 production|response to hypoxia|response to progesterone stimulus|salivary gland morphogenesis|SMAD protein import into nucleus|somatic stem cell division|transforming growth factor beta receptor signaling pathway	axon|extracellular matrix|extracellular space|neuronal cell body|platelet alpha granule lumen	beta-amyloid binding|cytokine activity|growth factor activity|protein heterodimerization activity|protein homodimerization activity|receptor signaling protein serine/threonine kinase activity|type II transforming growth factor beta receptor binding				0				all cancers(67;0.0459)|OV - Ovarian serous cystadenocarcinoma(81;0.049)|GBM - Glioblastoma multiforme(131;0.0776)		CTCCTTGCTGCGTGTCCCAAG	0.408												
EPRS	2058	broad.mit.edu	37	1	220170682	220170682	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:220170682G>T	uc001hly.1	-	18	2454	c.2184C>A	c.(2182-2184)ACC>ACA	p.T728T	EPRS_uc010puf.1_Silent_p.T479T|EPRS_uc001hlz.1_Silent_p.T735T	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	728	Glutamyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	AAGGAGCAGAGGTCTACCAAG	0.318												
MARK1	4139	broad.mit.edu	37	1	220826557	220826557	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:220826557A>G	uc001hmn.3	+	16	2448	c.1851A>G	c.(1849-1851)GAA>GAG	p.E617E	MARK1_uc009xdw.2_Silent_p.E618E|MARK1_uc010pun.1_Silent_p.E617E|MARK1_uc001hmm.3_Silent_p.E595E	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	617					intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		TCCATGGTGAACAGCTCCGGG	0.567												
TLR5	7100	broad.mit.edu	37	1	223285544	223285544	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:223285544G>T	uc001hnv.1	-	4	1276	c.830C>A	c.(829-831)CCT>CAT	p.P277H	TLR5_uc001hnw.1_Missense_Mutation_p.P277H	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	277	Extracellular (Potential).				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		GTTCTGGTCAGGATCTTTGAT	0.488												
C1orf65	164127	broad.mit.edu	37	1	223567614	223567614	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:223567614G>A	uc001hoa.2	+	1	900	c.797G>A	c.(796-798)CGT>CAT	p.R266H		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	266	Potential.									central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		GTGCTGACCCGTCTCAAGAAG	0.622												
CNIH3	149111	broad.mit.edu	37	1	224804920	224804920	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:224804920T>C	uc001hos.1	+	1	742	c.44T>C	c.(43-45)GTG>GCG	p.V15A		NM_152495	NP_689708	Q8TBE1	CNIH3_HUMAN	cornichon homolog 3	15	Helical; (Potential).				intracellular signal transduction|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic shaft|postsynaptic membrane					0	Breast(184;0.218)			GBM - Glioblastoma multiforme(131;0.073)		CTGTCTCTGGTGCTGTGCGCT	0.572												
CNIH3	149111	broad.mit.edu	37	1	224868721	224868721	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:224868721T>C	uc001hos.1	+	2	841	c.143T>C	c.(142-144)GTT>GCT	p.V48A		NM_152495	NP_689708	Q8TBE1	CNIH3_HUMAN	cornichon homolog 3	48	Lumenal (Potential).				intracellular signal transduction|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic shaft|postsynaptic membrane					0	Breast(184;0.218)			GBM - Glioblastoma multiforme(131;0.073)		TGCAATCCTGTTCATGCGGTA	0.488												
CNIH3	149111	broad.mit.edu	37	1	224922301	224922301	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:224922301C>A	uc001hos.1	+	5	1046	c.348C>A	c.(346-348)GCC>GCA	p.A116A		NM_152495	NP_689708	Q8TBE1	CNIH3_HUMAN	cornichon homolog 3	116	Cytoplasmic (Potential).				intracellular signal transduction|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic shaft|postsynaptic membrane					0	Breast(184;0.218)			GBM - Glioblastoma multiforme(131;0.073)		CAGAACTAGCCTACGACCCAC	0.522												
PARP1	142	broad.mit.edu	37	1	226552822	226552822	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:226552822G>A	uc001hqd.3	-	19	2710	c.2539C>T	c.(2539-2541)CGT>TGT	p.R847C		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	847	PARP catalytic.				cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		GGCTTGTAACGCTGGCATTCG	0.488								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA				
CDC42BPA	8476	broad.mit.edu	37	1	227216861	227216861	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:227216861C>T	uc001hqr.2	-	29	4767	c.3824G>A	c.(3823-3825)CGT>CAT	p.R1275H	CDC42BPA_uc001hqq.2_Missense_Mutation_p.R574H|CDC42BPA_uc001hqs.2_Missense_Mutation_p.R1194H|CDC42BPA_uc009xes.2_Missense_Mutation_p.R1247H|CDC42BPA_uc010pvs.1_Missense_Mutation_p.R1255H|CDC42BPA_uc001hqp.2_Missense_Mutation_p.R431H|CDC42BPA_uc001hqt.2_Missense_Mutation_p.R153H|CDC42BPA_uc001hqu.1_Missense_Mutation_p.R482H	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	1288	CNH.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				TCGTACATGACGATTTCGTCC	0.398												
CDC42BPA	8476	broad.mit.edu	37	1	227335223	227335223	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:227335223A>T	uc001hqr.2	-	7	1674	c.731T>A	c.(730-732)ATC>AAC	p.I244N	CDC42BPA_uc001hqs.2_Missense_Mutation_p.I244N|CDC42BPA_uc009xes.2_Missense_Mutation_p.I244N|CDC42BPA_uc010pvs.1_Missense_Mutation_p.I244N	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	244	Protein kinase.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				TTCAGGAGAGATATAATCTGG	0.358												
ZNF678	339500	broad.mit.edu	37	1	227842264	227842264	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:227842264A>G	uc001hqw.1	+	4	658	c.313A>G	c.(313-315)AAT>GAT	p.N105D	ZNF678_uc009xet.1_Intron|ZNF678_uc009xeu.1_Intron	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	160					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				ATGTGGCAGAAATTTTAGCTG	0.353												
JMJD4	65094	broad.mit.edu	37	1	227921375	227921375	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:227921375A>G	uc001hrb.2	-	4	700	c.700T>C	c.(700-702)TTC>CTC	p.F234L	SNAP47_uc001hqz.2_Intron|SNAP47_uc001hra.2_Intron|SNAP47_uc001hrd.2_5'Flank|SNAP47_uc001hre.2_5'Flank|SNAP47_uc001hrf.2_5'Flank|LOC100130093_uc001hqx.3_RNA|LOC100130093_uc001hqy.3_RNA|JMJD4_uc001hrc.2_Missense_Mutation_p.F234L	NM_023007	NP_075383	Q9H9V9	JMJD4_HUMAN	jumonji domain containing 4 isoform 1	234	JmjC.										0		Prostate(94;0.0885)				TCAGCATGGAACGGGGACCTG	0.622												
WNT3A	89780	broad.mit.edu	37	1	228238516	228238516	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:228238516A>G	uc001hrq.1	+	3	551	c.473A>G	c.(472-474)GAC>GGC	p.D158G	WNT3A_uc001hrp.1_Missense_Mutation_p.D158G	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	158					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				TGTAGCGAGGACATCGAGTTT	0.657												
GUK1	2987	broad.mit.edu	37	1	228333221	228333221	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:228333221G>C	uc001hsh.2	+	3	311	c.8G>C	c.(7-9)GGC>GCC	p.G3A	GUK1_uc001hsi.2_Missense_Mutation_p.G24A|GUK1_uc001hsj.2_5'UTR|GUK1_uc010pvv.1_Missense_Mutation_p.G3A	NM_000858	NP_000849	Q16774	KGUA_HUMAN	guanylate kinase 1 isoform b	3					nucleobase, nucleoside and nucleotide interconversion|purine nucleotide metabolic process	cytosol	ATP binding|guanylate kinase activity				0		Prostate(94;0.0405)				GGCATGTCGGGCCCCAGGCCT	0.627												
GJC2	57165	broad.mit.edu	37	1	228346175	228346175	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:228346175T>C	uc001hsk.2	+	2	891	c.716T>C	c.(715-717)GTG>GCG	p.V239A		NM_020435	NP_065168	Q5T442	CXG2_HUMAN	gap junction protein, gamma 2, 47kDa	239	Extracellular (Potential).				cell death	connexon complex|integral to membrane					0		Prostate(94;0.0405)				GGCTTCGAGGTGCGACCGTTC	0.647												
C1orf69	200205	broad.mit.edu	37	1	228363092	228363092	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:228363092G>A	uc001hsl.3	+	3	1038	c.949G>A	c.(949-951)GTG>ATG	p.V317M	C1orf69_uc010pvw.1_Missense_Mutation_p.V124M	NM_001010867	NP_001010867	Q5T440	CAF17_HUMAN	hypothetical protein LOC200205 precursor	317					glycine catabolic process|heme biosynthetic process	mitochondrion	aminomethyltransferase activity				0		Prostate(94;0.0405)				CCAGGGCAACGTGGGGCTGGC	0.632												
OBSCN	84033	broad.mit.edu	37	1	228433238	228433238	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:228433238C>T	uc009xez.1	+	12	3650	c.3606C>T	c.(3604-3606)GAC>GAT	p.D1202D	OBSCN_uc001hsn.2_Silent_p.D1202D	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1202	Ig-like 12.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGTACAAGGACGGGAAGAAGC	0.597												
OBSCN	84033	broad.mit.edu	37	1	228456347	228456347	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:228456347T>C	uc009xez.1	+	17	5022	c.4978T>C	c.(4978-4980)TAC>CAC	p.Y1660H	OBSCN_uc001hsn.2_Missense_Mutation_p.Y1660H|OBSCN_uc001hso.2_Missense_Mutation_p.Y106H	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1660	Ig-like 17.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGTGACGTGGTACAAGGATGG	0.677												
OBSCN	84033	broad.mit.edu	37	1	228509588	228509588	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:228509588C>T	uc009xez.1	+	55	15090	c.15046C>T	c.(15046-15048)CGG>TGG	p.R5016W	OBSCN_uc001hsn.2_Missense_Mutation_p.R5016W	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5016					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TCGGCTGCACCGGCTCTTCCG	0.647												
TTC13	79573	broad.mit.edu	37	1	231064815	231064815	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:231064815T>C	uc001huf.3	-	12	1356	c.1325A>G	c.(1324-1326)CAC>CGC	p.H442R	TTC13_uc009xfi.2_Missense_Mutation_p.H389R|TTC13_uc009xfj.2_RNA|TTC13_uc001hug.3_Missense_Mutation_p.H389R|TTC13_uc009xfk.1_Missense_Mutation_p.H332R	NM_024525	NP_078801	Q8NBP0	TTC13_HUMAN	tetratricopeptide repeat domain 13 isoform a	442							binding			ovary(1)|skin(1)	2	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)		COAD - Colon adenocarcinoma(196;0.243)		GGTATCAAGGTGTGCATGAAG	0.408												
C1orf124	83932	broad.mit.edu	37	1	231487299	231487299	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:231487299T>G	uc001hur.2	+	4	1148	c.700T>G	c.(700-702)TTG>GTG	p.L234V	C1orf124_uc001hus.2_Missense_Mutation_p.L234V|C1orf124_uc001hut.2_Missense_Mutation_p.L191V	NM_032018	NP_114407	Q9H040	CA124_HUMAN	hypothetical protein LOC83932 isoform a	234					DNA repair	nuclear speck	DNA binding|metal ion binding				0	Breast(184;0.0871)	all_cancers(173;0.151)|Prostate(94;0.183)				GGAACCAGTATTGGCCGCAGA	0.388												
TSNAX	7257	broad.mit.edu	37	1	231673007	231673007	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:231673007T>C	uc001huw.2	+	3	328	c.170T>C	c.(169-171)GTG>GCG	p.V57A	TSNAX-DISC1_uc010pwe.1_5'UTR|TSNAX-DISC1_uc010pwf.1_5'UTR|TSNAX-DISC1_uc010pwg.1_5'UTR|TSNAX-DISC1_uc010pwh.1_5'UTR|TSNAX-DISC1_uc010pwi.1_Intron|TSNAX-DISC1_uc010pwj.1_5'UTR|TSNAX-DISC1_uc010pwk.1_5'UTR|TSNAX-DISC1_uc010pwl.1_RNA	NM_005999	NP_005990	Q99598	TSNAX_HUMAN	translin-associated factor X	57					cell differentiation|multicellular organismal development|spermatogenesis	nucleus|perinuclear region of cytoplasm	protein transporter activity|sequence-specific DNA binding				0		all_cancers(173;0.0395)|Acute lymphoblastic leukemia(190;3.76e-06)|Prostate(94;0.116)				GAGAGACTTGTGAAACTTAGT	0.343												
SIPA1L2	57568	broad.mit.edu	37	1	232538136	232538136	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:232538136A>G	uc001hvg.2	-	20	5180	c.5022_splice	c.e20+1	p.K1674_splice	SIPA1L2_uc001hvf.2_Splice_Site_p.K730_splice	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like						regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				CCAATTGATTACCTTCCGAAG	0.408												
SIPA1L2	57568	broad.mit.edu	37	1	232650649	232650649	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:232650649A>G	uc001hvg.2	-	1	595	c.437T>C	c.(436-438)GTC>GCC	p.V146A		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	146					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GGGGGAATGGACAAAGATGTC	0.488												
PCNXL2	80003	broad.mit.edu	37	1	233394715	233394715	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:233394715C>T	uc001hvl.2	-	5	1128	c.893G>A	c.(892-894)CGG>CAG	p.R298Q	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	298						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GCTTTGTACCCGTTCCCTTAT	0.552												
TARBP1	6894	broad.mit.edu	37	1	234563331	234563331	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:234563331C>T	uc001hwd.2	-	18	3242	c.3242G>A	c.(3241-3243)CGT>CAT	p.R1081H		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	1081					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			CCTTTGATCACGCCTAAACAC	0.343												
TARBP1	6894	broad.mit.edu	37	1	234565023	234565023	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:234565023C>T	uc001hwd.2	-	17	2919	c.2919G>A	c.(2917-2919)GCG>GCA	p.A973A		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	973					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			TAATTTTCCACGCCATGTCAA	0.343												
RBM34	23029	broad.mit.edu	37	1	235324296	235324296	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:235324296T>C	uc001hwn.2	-	2	170	c.140A>G	c.(139-141)CAC>CGC	p.H47R	RBM34_uc001hwo.2_RNA|ARID4B_uc001hwp.2_RNA|RBM34_uc010pxp.1_Missense_Mutation_p.H47R	NM_015014	NP_055829	P42696	RBM34_HUMAN	RNA binding motif protein 34 isoform 1	47						nucleolus	nucleotide binding|RNA binding			central_nervous_system(1)	1	Ovarian(103;0.0398)	all_cancers(173;0.177)|Prostate(94;0.0166)	OV - Ovarian serous cystadenocarcinoma(106;5.43e-05)|Epithelial(3;0.000121)			TCTGGAATGGTGTTCGCCGCG	0.582												
B3GALNT2	148789	broad.mit.edu	37	1	235658060	235658060	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:235658060T>C	uc001hxc.2	-	2	420	c.191A>G	c.(190-192)CAT>CGT	p.H64R	B3GALNT2_uc001hxd.1_Missense_Mutation_p.H105R	NM_152490	NP_689703	Q8NCR0	B3GL2_HUMAN	beta-1,3-N-acetylgalactosaminyltransferase 2	64	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity			breast(1)	1	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.0539)|Prostate(94;0.0353)	OV - Ovarian serous cystadenocarcinoma(106;0.000117)			TCGAAGTTCATGGTTATTGCG	0.428												
LYST	1130	broad.mit.edu	37	1	235827885	235827885	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:235827885T>C	uc001hxj.2	-	51	11250	c.11075A>G	c.(11074-11076)AAC>AGC	p.N3692S	LYST_uc001hxi.2_Missense_Mutation_p.N916S	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	3692	WD 5.				defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GAGATCCCCGTTCACCGTCCA	0.552									Chediak-Higashi_syndrome			
LYST	1130	broad.mit.edu	37	1	235896835	235896835	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:235896835C>T	uc001hxj.2	-	34	8944	c.8769G>A	c.(8767-8769)TGG>TGA	p.W2923*	LYST_uc001hxi.2_Nonsense_Mutation_p.W147*	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	2923					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TAAGTTCCTGCCAATGTCTGC	0.408									Chediak-Higashi_syndrome			
LYST	1130	broad.mit.edu	37	1	235922883	235922883	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:235922883A>G	uc001hxj.2	-	23	6445	c.6270T>C	c.(6268-6270)AAT>AAC	p.N2090N	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	2090					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GTGGAATAATATTAGAGGAAT	0.378									Chediak-Higashi_syndrome			
NID1	4811	broad.mit.edu	37	1	236148697	236148697	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:236148697T>C	uc001hxo.2	-	15	3139	c.3037A>G	c.(3037-3039)ACC>GCC	p.T1013A	NID1_uc009xgd.2_Missense_Mutation_p.T880A|NID1_uc009xgc.2_Missense_Mutation_p.T99A	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	1013	LDL-receptor class B 1.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	ATGATGGTGGTTGGCTCTCCA	0.458												
ACTN2	88	broad.mit.edu	37	1	236914881	236914881	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:236914881A>G	uc001hyf.2	+	15	1972	c.1768A>G	c.(1768-1770)AAC>GAC	p.N590D	ACTN2_uc001hyg.2_Missense_Mutation_p.N382D|ACTN2_uc009xgi.1_Missense_Mutation_p.N590D|ACTN2_uc010pxu.1_Missense_Mutation_p.N279D|ACTN2_uc001hyh.2_Missense_Mutation_p.N278D	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	590	Spectrin 3.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TCAGAGCTACAACATCAGAAT	0.597												
MTR	4548	broad.mit.edu	37	1	236995292	236995292	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:236995292T>C	uc001hyi.3	+	13	1525	c.1102T>C	c.(1102-1104)TAC>CAC	p.Y368H	MTR_uc010pxw.1_Intron|MTR_uc010pxx.1_Missense_Mutation_p.Y368H|MTR_uc010pxy.1_Missense_Mutation_p.Y368H	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	368					nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	GATTGGACCGTACACCAACTT	0.398												
MTR	4548	broad.mit.edu	37	1	237016301	237016301	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:237016301T>C	uc001hyi.3	+	18	2289	c.1866T>C	c.(1864-1866)GAT>GAC	p.D622D	MTR_uc010pxw.1_Silent_p.D215D|MTR_uc010pxx.1_Silent_p.D622D|MTR_uc010pxy.1_Intron	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	622	Pterin-binding.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	TGTATGATGATATCCATAAGG	0.433												
RYR2	6262	broad.mit.edu	37	1	237838135	237838135	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:237838135T>A	uc001hyl.1	+	60	8939	c.8819T>A	c.(8818-8820)ATC>AAC	p.I2940N	RYR2_uc010pxz.1_5'UTR	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2940	Modulator (Potential).|Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CATCAGTATATCCTGGAGTTT	0.418												
CHRM3	1131	broad.mit.edu	37	1	240071898	240071898	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:240071898T>C	uc001hyp.2	+	5	1926	c.1147T>C	c.(1147-1149)TTA>CTA	p.L383L		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	383	Cytoplasmic (By similarity).			KLP -> RLS (in Ref. 7; AAG30036).	cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	CTCCACCAAGTTACCCTCATC	0.602												
FMN2	56776	broad.mit.edu	37	1	240286491	240286491	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:240286491T>C	uc010pyd.1	+	2	1853	c.1628T>C	c.(1627-1629)TTG>TCG	p.L543S	FMN2_uc010pye.1_Missense_Mutation_p.L543S	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	543					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CGAACGCTGTTGGAGAAGCTG	0.547												
RGS7	6000	broad.mit.edu	37	1	240966228	240966228	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:240966228C>T	uc001hyv.2	-	16	1665	c.1335G>A	c.(1333-1335)CAG>CAA	p.Q445Q	RGS7_uc010pyh.1_Silent_p.Q419Q|RGS7_uc010pyj.1_Silent_p.Q361Q|RGS7_uc001hyu.2_Silent_p.Q445Q|RGS7_uc009xgn.1_Silent_p.Q392Q|RGS7_uc001hyw.2_Silent_p.Q445Q|RGS7_uc001hyt.2_Silent_p.Q277Q	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	445	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			GTAGAAGCTCCTGATAGGCAC	0.358												
PLD5	200150	broad.mit.edu	37	1	242511481	242511481	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:242511481T>A	uc001hzn.1	-	2	380	c.253A>T	c.(253-255)ATC>TTC	p.I85F	PLD5_uc001hzl.3_Missense_Mutation_p.I23F|PLD5_uc001hzm.3_5'UTR|PLD5_uc001hzo.1_5'UTR			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	85	Helical; (Potential).					integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			GCTGAAAAGATCAGTGCAACC	0.428												
ZNF238	10472	broad.mit.edu	37	1	244218042	244218042	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:244218042T>A	uc001iae.2	+	1	1461	c.939T>A	c.(937-939)CAT>CAA	p.H313Q	ZNF238_uc001iad.3_Missense_Mutation_p.H322Q|ZNF238_uc001iaf.1_3'UTR	NM_006352	NP_006343	Q99592	ZN238_HUMAN	zinc finger protein 238 isoform 2	313	Interaction with DNMT3A.				negative regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|pancreas(2)	5	all_cancers(71;6.42e-05)|all_epithelial(71;7e-05)|Breast(184;0.0333)|Ovarian(71;0.0619)|all_lung(81;0.089)|all_neural(11;0.101)|Lung NSC(105;0.123)		all cancers(7;1.35e-08)|GBM - Glioblastoma multiforme(7;1e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00223)			AGCCGGCCCATCTGGCTCCCC	0.532												
KIF26B	55083	broad.mit.edu	37	1	245849706	245849706	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:245849706T>C	uc001ibf.1	+	12	3861	c.3421T>C	c.(3421-3423)TCT>CCT	p.S1141P	KIF26B_uc001ibg.1_Missense_Mutation_p.S759P|KIF26B_uc001ibh.1_Missense_Mutation_p.S383P	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	1141					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			AAAATCCATGTCTGCTGGGAG	0.582												
AHCTF1	25909	broad.mit.edu	37	1	247013668	247013668	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:247013668T>C	uc001ibu.1	-	32	5647	c.5640A>G	c.(5638-5640)GAA>GAG	p.E1880E	AHCTF1_uc001ibv.1_Silent_p.E1889E|AHCTF1_uc009xgs.1_Silent_p.E741E|AHCTF1_uc001ibw.1_RNA	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	1880	Necessary for nuclear localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TTTCCTGATTTTCTACAGATC	0.323												
AHCTF1	25909	broad.mit.edu	37	1	247051505	247051505	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:247051505C>T	uc001ibu.1	-	18	2306	c.2299G>A	c.(2299-2301)GTT>ATT	p.V767I	AHCTF1_uc001ibv.1_Missense_Mutation_p.V776I|AHCTF1_uc009xgs.1_5'UTR	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	767	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			GCTTCAGTAACGCCGTCTAAT	0.328												
ZNF695	57116	broad.mit.edu	37	1	247150946	247150946	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:247150946T>C	uc009xgu.2	-	4	1016	c.871A>G	c.(871-873)ACT>GCT	p.T291A	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron|ZNF695_uc009xgt.1_Intron|ZNF695_uc001ibx.2_Intron|ZNF695_uc001iby.2_Intron	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	291					regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TTCTCTCCAGTATGAATTTTC	0.348												
VN1R5	317705	broad.mit.edu	37	1	247420160	247420160	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:247420160C>T	uc010pyu.1	+	2	787	c.787C>T	c.(787-789)CCA>TCA	p.P263S		NM_173858	NP_776257	Q7Z5H4	VN1R5_HUMAN	vomeronasal 1 receptor 5	263	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0	all_cancers(71;5.7e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)	all_cancers(173;0.0314)	OV - Ovarian serous cystadenocarcinoma(106;0.00854)			CCGAGTCTCACCAGTGAAAAG	0.473												
OR11L1	391189	broad.mit.edu	37	1	248005113	248005113	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:248005113A>G	uc001idn.1	-	1	86	c.86T>C	c.(85-87)GTC>GCC	p.V29A		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CAGGAAAATGACAAAGAGCAG	0.507												
OR2L8	391190	broad.mit.edu	37	1	248112616	248112616	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:248112616A>C	uc001idt.1	+	1	457	c.457A>C	c.(457-459)ATC>CTC	p.I153L	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			CATAGGCTCGATCAATGCTTG	0.443												
OR2L2	26246	broad.mit.edu	37	1	248201952	248201952	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:248201952C>A	uc001idw.2	+	1	479	c.383C>A	c.(382-384)CCT>CAT	p.P128H	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	128	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			ATTTGCTTTCCTCTCCACTAT	0.398												
OR2L13	284521	broad.mit.edu	37	1	248263216	248263216	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:248263216T>A	uc001ids.2	+	3	876	c.539T>A	c.(538-540)GTC>GAC	p.V180D		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			TTCTGCGATGTCCCAGCCATG	0.458												
OR2T2	401992	broad.mit.edu	37	1	248616758	248616758	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:248616758G>A	uc001iek.1	+	1	660	c.660G>A	c.(658-660)ACG>ACA	p.T220T		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	220	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCTCCTACACGCACATCCTCC	0.527												
OR2G6	391211	broad.mit.edu	37	1	248685072	248685072	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:248685072A>G	uc001ien.1	+	1	125	c.125A>G	c.(124-126)AAC>AGC	p.N42S		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	42	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTTCTGGGGAACACTGCCCTC	0.468												
OR2T10	127069	broad.mit.edu	37	1	248756250	248756250	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:248756250A>G	uc010pzn.1	-	1	820	c.820T>C	c.(820-822)TCA>CCA	p.S274P		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	274	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AAAAAGGATGACATCATATCT	0.428												
DIP2C	22982	broad.mit.edu	37	10	395363	395363	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:395363T>A	uc001ifp.2	-	25	3107	c.3017A>T	c.(3016-3018)CAG>CTG	p.Q1006L	DIP2C_uc009xhi.1_Missense_Mutation_p.Q392L	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	1006						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CTTGTGCAGCTGCACGCAGGT	0.602												
PITRM1	10531	broad.mit.edu	37	10	3199640	3199640	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:3199640A>G	uc010qah.1	-	11	1270	c.1238T>C	c.(1237-1239)CTG>CCG	p.L413P	PITRM1_uc001igr.1_Missense_Mutation_p.L445P|PITRM1_uc001igt.1_Missense_Mutation_p.L445P|PITRM1_uc009xhv.1_Missense_Mutation_p.L10P|PITRM1_uc001igu.1_Missense_Mutation_p.L437P|PITRM1_uc010qai.1_Missense_Mutation_p.L416P|PITRM1_uc001igw.1_Missense_Mutation_p.L445P			E7ES23	E7ES23_HUMAN	SubName: Full=cDNA FLJ54065, moderately similar to Mus musculus pitrilysin metallepetidase 1 (Pitrm1), mRNA;	413					proteolysis		metalloendopeptidase activity|zinc ion binding			pancreas(1)	1						TGTCAGCATCAGCCCAAAGCT	0.308												
KLF6	1316	broad.mit.edu	37	10	3821740	3821740	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:3821740C>T	uc001iha.2	-	4	1110	c.843G>A	c.(841-843)AGG>AGA	p.R281R	KLF6_uc010qaj.1_3'UTR|KLF6_uc010qak.1_RNA|KLF6_uc010qal.1_Silent_p.R239R	NM_001300	NP_001291	Q99612	KLF6_HUMAN	Kruppel-like factor 6 isoform A	281	C2H2-type 3.				B cell differentiation	nucleus	zinc ion binding			central_nervous_system(3)|lung(1)	4				Colorectal(1;0.238)		CTCAGAGGTGCCTCTTCATGT	0.562												
NET1	10276	broad.mit.edu	37	10	5498073	5498073	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:5498073A>G	uc001iia.2	+	11	1359	c.1221A>G	c.(1219-1221)CAA>CAG	p.Q407Q	NET1_uc010qar.1_Silent_p.Q226Q|NET1_uc001iib.2_Silent_p.Q353Q|NET1_uc010qas.1_Silent_p.Q226Q	NM_001047160	NP_001040625	Q7Z628	ARHG8_HUMAN	neuroepithelial cell transforming gene 1 isoform	407	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell growth|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	Rho guanyl-nucleotide exchange factor activity			breast(1)	1						TCCTGTTTCAAGACATCTTGG	0.433												
CALML5	51806	broad.mit.edu	37	10	5541219	5541219	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:5541219G>A	uc001iic.2	-	1	315	c.183C>T	c.(181-183)GAC>GAT	p.D61D		NM_017422	NP_059118	Q9NZT1	CALL5_HUMAN	calmodulin-like 5	61	EF-hand 2.|2 (Potential).				epidermis development|signal transduction		calcium ion binding|protein binding				0						TGATTTCGCCGTCGCCGTCGC	0.662												
CALML3	810	broad.mit.edu	37	10	5567441	5567441	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:5567441G>A	uc001iie.1	+	1	518	c.393G>A	c.(391-393)ACG>ACA	p.T131T	uc001iid.1_5'Flank	NM_005185	NP_005176	P27482	CALL3_HUMAN	calmodulin-like 3	131	4.|EF-hand 4.						calcium ion binding				0						CCGCGGACACGGACGGAGACG	0.677												
ITIH5	80760	broad.mit.edu	37	10	7682799	7682799	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:7682799A>G	uc001ijq.2	-	4	398	c.319T>C	c.(319-321)TAT>CAT	p.Y107H	ITIH5_uc001ijr.1_Missense_Mutation_p.Y107H	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	107	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						TCGCCCTGATACACCTTGTCT	0.388												
ITIH5	80760	broad.mit.edu	37	10	7683905	7683905	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:7683905A>G	uc001ijq.2	-	3	363	c.284T>C	c.(283-285)ATC>ACC	p.I95T	ITIH5_uc001ijr.1_Missense_Mutation_p.I95T	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	95	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						GAAGTTGGTGATGAAAGCTGC	0.507												
TAF3	83860	broad.mit.edu	37	10	7866512	7866512	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:7866512C>T	uc010qbd.1	+	2	398	c.398C>T	c.(397-399)TCT>TTT	p.S133F		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	133					maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						CCCATTGTGTCTTCTCAAGAA	0.353												
TAF3	83860	broad.mit.edu	37	10	8006770	8006770	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:8006770A>G	uc010qbd.1	+	3	1297	c.1297A>G	c.(1297-1299)ACT>GCT	p.T433A		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	433					maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						GGAGTGTACTACTCCCAAAGC	0.473												
TAF3	83860	broad.mit.edu	37	10	8007187	8007187	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:8007187A>G	uc010qbd.1	+	3	1714	c.1714A>G	c.(1714-1716)ACA>GCA	p.T572A		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	572	Lys-rich.				maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						TGGCAGGGAAACAAAGTATCC	0.209												
NMT2	9397	broad.mit.edu	37	10	15154898	15154898	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:15154898T>C	uc001inz.1	-	10	1319	c.1235A>G	c.(1234-1236)CAC>CGC	p.H412R	NMT2_uc001ioa.1_Missense_Mutation_p.H399R|NMT2_uc009xjo.1_Missense_Mutation_p.H412R|NMT2_uc010qbz.1_Missense_Mutation_p.H224R	NM_004808	NP_004799	O60551	NMT2_HUMAN	N-myristoyltransferase 2	412					N-terminal protein myristoylation|protein lipoylation	Golgi apparatus|plasma membrane	glycylpeptide N-tetradecanoyltransferase activity			ovary(1)	1						GTGAGCAGGGTGGTGCATCAC	0.542												
FAM171A1	221061	broad.mit.edu	37	10	15255063	15255063	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:15255063C>T	uc001iob.2	-	8	2531	c.2524G>A	c.(2524-2526)GCC>ACC	p.A842T		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	842	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TCCGAGGGGGCATCCGCAGTC	0.617												
CUBN	8029	broad.mit.edu	37	10	16994323	16994323	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:16994323A>G	uc001ioo.2	-	33	4973	c.4921T>C	c.(4921-4923)TAT>CAT	p.Y1641H		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1641	CUB 11.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TTGTTTGGATAATTGGCAGGG	0.463												
CACNB2	783	broad.mit.edu	37	10	18823131	18823131	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:18823131T>C	uc001ipr.2	+	11	1241	c.1181T>C	c.(1180-1182)GTA>GCA	p.V394A	CACNB2_uc009xjz.1_Intron|CACNB2_uc001ips.2_Missense_Mutation_p.V370A|CACNB2_uc001ipt.2_Missense_Mutation_p.V356A|CACNB2_uc001ipu.2_Missense_Mutation_p.V366A|CACNB2_uc001ipv.2_Missense_Mutation_p.V342A|CACNB2_uc009xka.1_Missense_Mutation_p.V328A|CACNB2_uc001ipw.2_Missense_Mutation_p.V301A|CACNB2_uc001ipx.2_Missense_Mutation_p.V339A|CACNB2_uc001ipz.2_Missense_Mutation_p.V316A|CACNB2_uc001ipy.2_Missense_Mutation_p.V340A|CACNB2_uc010qco.1_Missense_Mutation_p.V308A|CACNB2_uc001iqa.2_Missense_Mutation_p.V346A|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	394					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCTATTATAGTATATGTAAAG	0.353												
C10orf113	387638	broad.mit.edu	37	10	21414839	21414839	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:21414839T>C	uc001iqm.2	-	2	371	c.351A>G	c.(349-351)ATA>ATG	p.I117M	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	127										ovary(3)|pancreas(1)	4						TCCCTTTGGTTATACCTTCTG	0.468												
PIP4K2A	5305	broad.mit.edu	37	10	23003192	23003192	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:23003192G>A	uc001irl.3	-	1	312	c.64C>T	c.(64-66)CAC>TAC	p.H22Y		NM_005028	NP_005019	P48426	PI42A_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	22							1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding			ovary(1)|skin(1)	2						GCTACGAAGTGCTTCTTCTTG	0.642												
THNSL1	79896	broad.mit.edu	37	10	25314110	25314110	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:25314110T>C	uc001isi.3	+	3	2287	c.1958T>C	c.(1957-1959)GTG>GCG	p.V653A	ENKUR_uc001ish.1_Intron	NM_024838	NP_079114	Q8IYQ7	THNS1_HUMAN	threonine synthase-like 1	653					threonine biosynthetic process		ATP binding|pyridoxal phosphate binding|shikimate kinase activity|threonine synthase activity			pancreas(1)	1					L-Threonine(DB00156)|Pyridoxal Phosphate(DB00114)	GCAGATAGGGTGCAAGACAAA	0.418												
GPR158	57512	broad.mit.edu	37	10	25861658	25861658	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:25861658T>C	uc001isj.2	+	7	1655	c.1595T>C	c.(1594-1596)GTA>GCA	p.V532A		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	532	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						ATGCTGGCAGTAATACTCTTG	0.438												
GPR158	57512	broad.mit.edu	37	10	25887184	25887184	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:25887184T>C	uc001isj.2	+	11	2689	c.2629T>C	c.(2629-2631)TGC>CGC	p.C877R	GPR158_uc001isk.2_Missense_Mutation_p.C252R	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	877	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						GCCGTTGGTGTGCAAGTCAGC	0.488												
GPR158	57512	broad.mit.edu	37	10	25887343	25887343	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:25887343A>G	uc001isj.2	+	11	2848	c.2788A>G	c.(2788-2790)AAA>GAA	p.K930E	GPR158_uc001isk.2_Missense_Mutation_p.K305E	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	930	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						AGAACGCACTAAATCCCAGAA	0.433												
GPR158	57512	broad.mit.edu	37	10	25887641	25887641	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:25887641T>C	uc001isj.2	+	11	3146	c.3086T>C	c.(3085-3087)GTA>GCA	p.V1029A	GPR158_uc001isk.2_Missense_Mutation_p.V404A	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	1029	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CAAAAGCACGTATCTATTGTG	0.453												
ANKRD26	22852	broad.mit.edu	37	10	27306695	27306695	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:27306695C>G	uc001ith.2	-	30	4411	c.4239G>C	c.(4237-4239)GAG>GAC	p.E1413D	ANKRD26_uc001itg.2_Missense_Mutation_p.E1100D|ANKRD26_uc009xku.1_Missense_Mutation_p.E1414D	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	1413	Potential.					centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						AACCTGCAGTCTCCAGTTCTG	0.338												
ANKRD26	22852	broad.mit.edu	37	10	27382687	27382687	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:27382687A>G	uc001ith.2	-	2	456	c.284T>C	c.(283-285)GTA>GCA	p.V95A	ANKRD26_uc009xku.1_Missense_Mutation_p.V95A	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	95	ANK 2.					centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						GAGAGTTACTACTTCTGGATG	0.443												
MASTL	84930	broad.mit.edu	37	10	27454351	27454351	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:27454351G>A	uc001itm.2	+	6	1333	c.694G>A	c.(694-696)GCA>ACA	p.A232T	MASTL_uc001itl.2_Missense_Mutation_p.A232T|MASTL_uc009xkw.1_Missense_Mutation_p.A232T|MASTL_uc009xkx.1_RNA	NM_032844	NP_116233	Q96GX5	GWL_HUMAN	microtubule associated serine/threonine	232	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|mitosis|negative regulation of protein phosphatase type 2A activity|regulation of cell cycle|response to DNA damage stimulus	centrosome|cleavage furrow|nucleus	ATP binding|protein phosphatase 2A binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						TCAAGACCCTGCAAACATCCT	0.393												
PTCHD3	374308	broad.mit.edu	37	10	27687296	27687296	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:27687296A>T	uc001itu.2	-	4	2349	c.2231T>A	c.(2230-2232)ATC>AAC	p.I744N		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	744					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GGAAGAAATGATTTCATTTGA	0.313												
MPP7	143098	broad.mit.edu	37	10	28358700	28358700	+	Splice_Site	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:28358700C>T	uc001iua.1	-	15	1608	c.1204_splice	c.e15+1	p.H402_splice	MPP7_uc009xkz.1_Splice_Site|MPP7_uc001iub.1_Splice_Site_p.H402_splice|MPP7_uc009xla.2_Splice_Site_p.H402_splice|MPP7_uc010qdv.1_Splice_Site	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7						establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						GCAGAACTCACGGGGCACTGT	0.378												
WAC	51322	broad.mit.edu	37	10	28897190	28897190	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:28897190C>T	uc001iuf.2	+	8	1080	c.995C>T	c.(994-996)CCC>CTC	p.P332L	WAC_uc001iud.2_Missense_Mutation_p.P287L|WAC_uc001iue.2_Intron|WAC_uc009xlb.2_Missense_Mutation_p.P287L|WAC_uc001iug.2_Missense_Mutation_p.P229L|WAC_uc001iuh.2_Missense_Mutation_p.P287L	NM_016628	NP_057712	Q9BTA9	WAC_HUMAN	WW domain-containing adapter with a coiled-coil	332					cell cycle checkpoint|histone H2B conserved C-terminal lysine ubiquitination|histone monoubiquitination|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nuclear speck	chromatin binding|RNA polymerase II core binding			large_intestine(1)|ovary(1)	2						GGACTGAACCCCACATCTGCA	0.468												
KIAA1462	57608	broad.mit.edu	37	10	30316194	30316194	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:30316194A>G	uc001iux.2	-	2	2942	c.2883T>C	c.(2881-2883)GTT>GTC	p.V961V	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.V823V|KIAA1462_uc009xle.1_Silent_p.V961V	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	961										ovary(4)	4						TTCCGTTGCTAACCTCCAGGT	0.577												
KIAA1462	57608	broad.mit.edu	37	10	30317740	30317740	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:30317740A>T	uc001iux.2	-	2	1396	c.1337T>A	c.(1336-1338)ATA>AAA	p.I446K	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.I308K|KIAA1462_uc009xle.1_Missense_Mutation_p.I446K	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	446										ovary(4)	4						GTCAAGCTTTATGTCTTCACA	0.483												
ZNF438	220929	broad.mit.edu	37	10	31134202	31134202	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:31134202T>C	uc010qdz.1	-	8	2610	c.2175A>G	c.(2173-2175)AGA>AGG	p.R725R	ZNF438_uc001ivn.2_Silent_p.R676R|ZNF438_uc010qdy.1_Silent_p.R715R|ZNF438_uc001ivo.3_Silent_p.R289R|ZNF438_uc009xlg.2_Silent_p.R725R|ZNF438_uc001ivp.3_Silent_p.R715R|ZNF438_uc010qea.1_Silent_p.R725R|ZNF438_uc010qeb.1_Silent_p.R725R	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	725					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				GCCTTTTCAGTCTTGGACATG	0.537												
EPC1	80314	broad.mit.edu	37	10	32575755	32575755	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:32575755T>C	uc001iwg.1	-	9	1528	c.1258A>G	c.(1258-1260)ACT>GCT	p.T420A	EPC1_uc001iwi.3_Missense_Mutation_p.T370A|EPC1_uc009xlt.2_Missense_Mutation_p.T370A|EPC1_uc001iwh.1_Missense_Mutation_p.T420A	NM_025209	NP_079485	Q9H2F5	EPC1_HUMAN	enhancer of polycomb 1	420					histone H2A acetylation|histone H4 acetylation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear membrane|Piccolo NuA4 histone acetyltransferase complex				ovary(3)|central_nervous_system(1)	4		Prostate(175;0.0199)				CAGTTGCCAGTTTGGTCTAAG	0.368												
C10orf68	79741	broad.mit.edu	37	10	32983820	32983820	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:32983820A>G	uc001iwn.3	+	6	752	c.279A>G	c.(277-279)GAA>GAG	p.E93E	C10orf68_uc001iwl.1_Silent_p.E101E|C10orf68_uc001iwm.1_Intron|C10orf68_uc010qei.1_Silent_p.E20E	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	93										skin(2)|ovary(1)	3						ATGATGAAGAACCAGGCAAAA	0.338												
NRP1	8829	broad.mit.edu	37	10	33481334	33481334	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:33481334T>C	uc001iwx.3	-	13	2460	c.1937A>G	c.(1936-1938)TAT>TGT	p.Y646C	NRP1_uc001iwv.3_Missense_Mutation_p.Y646C|NRP1_uc009xlz.2_Missense_Mutation_p.Y639C|NRP1_uc001iww.3_Missense_Mutation_p.Y458C|NRP1_uc001iwy.3_Missense_Mutation_p.Y639C	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	646	Extracellular (Potential).|MAM.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	GTTAAAACCATATGTTGGAAA	0.448												
PARD3	56288	broad.mit.edu	37	10	34620065	34620065	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:34620065T>C	uc010qej.1	-	19	2822	c.2822A>G	c.(2821-2823)GAT>GGT	p.D941G	PARD3_uc010qek.1_Missense_Mutation_p.D938G|PARD3_uc010qel.1_Missense_Mutation_p.D941G|PARD3_uc010qem.1_Missense_Mutation_p.D925G|PARD3_uc010qen.1_Missense_Mutation_p.D895G|PARD3_uc010qeo.1_Missense_Mutation_p.D895G|PARD3_uc010qep.1_Missense_Mutation_p.D851G|PARD3_uc010qeq.1_Missense_Mutation_p.D866G|PARD3_uc001ixo.1_Missense_Mutation_p.D654G|PARD3_uc001ixp.1_Missense_Mutation_p.D772G|PARD3_uc001ixq.1_Missense_Mutation_p.D895G|PARD3_uc001ixr.1_Missense_Mutation_p.D938G|PARD3_uc001ixt.1_Missense_Mutation_p.D759G|PARD3_uc001ixu.1_Missense_Mutation_p.D883G|PARD3_uc001ixs.1_Missense_Mutation_p.D564G	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	941					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				GCCTTCATCATCATCATCTAC	0.358												
PARD3	56288	broad.mit.edu	37	10	34739363	34739363	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:34739363T>C	uc010qej.1	-	5	596	c.596A>G	c.(595-597)TAC>TGC	p.Y199C	PARD3_uc010qek.1_Missense_Mutation_p.Y199C|PARD3_uc010qel.1_Missense_Mutation_p.Y199C|PARD3_uc010qem.1_Missense_Mutation_p.Y199C|PARD3_uc010qen.1_Missense_Mutation_p.Y199C|PARD3_uc010qeo.1_Missense_Mutation_p.Y199C|PARD3_uc010qep.1_Intron|PARD3_uc010qeq.1_Intron|PARD3_uc001ixp.1_Missense_Mutation_p.Y64C|PARD3_uc001ixq.1_Missense_Mutation_p.Y199C|PARD3_uc001ixr.1_Missense_Mutation_p.Y199C|PARD3_uc001ixt.1_Intron|PARD3_uc001ixu.1_Intron	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	199					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				GAGGCTTCTGTAGTTTTCATC	0.428												
ZNF33A	7581	broad.mit.edu	37	10	38345181	38345181	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:38345181T>C	uc001izh.2	+	5	2304	c.2126T>C	c.(2125-2127)GTA>GCA	p.V709A	ZNF33A_uc001izg.2_Missense_Mutation_p.V710A|ZNF33A_uc010qev.1_Missense_Mutation_p.V716A|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	709	C2H2-type 14.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						TCACTCACAGTACATCACAGG	0.403												
ZNF33A	7581	broad.mit.edu	37	10	38345257	38345257	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:38345257A>G	uc001izh.2	+	5	2380	c.2202A>G	c.(2200-2202)GAA>GAG	p.E734E	ZNF33A_uc001izg.2_Silent_p.E735E|ZNF33A_uc010qev.1_Silent_p.E741E|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	734	C2H2-type 15.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						GTAAATCGGAACTTGCTCAAC	0.393												
HNRNPF	3185	broad.mit.edu	37	10	43882564	43882564	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:43882564T>C	uc009xmh.1	-	3	1256	c.769A>G	c.(769-771)ACC>GCC	p.T257A	HNRNPF_uc001jar.2_Missense_Mutation_p.T257A|HNRNPF_uc001jas.2_Missense_Mutation_p.T257A|HNRNPF_uc001jat.2_Missense_Mutation_p.T257A|HNRNPF_uc001jav.2_Missense_Mutation_p.T257A|HNRNPF_uc001jau.2_Missense_Mutation_p.T257A|uc010qfa.1_Silent_p.G82G	NM_001098208	NP_001091678	P52597	HNRPF_HUMAN	heterogeneous nuclear ribonucleoprotein F	257					regulation of RNA splicing	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding				0						AACAGGTCGGTGGTGAAGCCG	0.592												
ZNF22	7570	broad.mit.edu	37	10	45499107	45499107	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:45499107T>C	uc001jbw.2	+	2	534	c.291T>C	c.(289-291)AAT>AAC	p.N97N	C10orf25_uc010qff.1_5'Flank|C10orf25_uc001jbv.1_5'Flank|uc001jbx.1_RNA	NM_006963	NP_008894	P17026	ZNF22_HUMAN	zinc finger protein 22 (KOX 15)	97	C2H2-type 2.				odontogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|plasma membrane	DNA binding|zinc ion binding			breast(1)|kidney(1)	2		Prostate(175;0.0352)|all_neural(218;0.202)				AGAGTTCTAATCTCATTCAGC	0.418												
ANUBL1	93550	broad.mit.edu	37	10	46159025	46159025	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:46159025A>G	uc001jcp.3	-	2	391	c.149T>C	c.(148-150)GTT>GCT	p.V50A	ANUBL1_uc001jcm.3_Missense_Mutation_p.V50A|ANUBL1_uc009xmu.2_5'UTR|ANUBL1_uc001jcn.3_5'UTR|ANUBL1_uc001jco.3_Missense_Mutation_p.V50A|ANUBL1_uc001jcq.2_RNA|ANUBL1_uc001jcr.2_Missense_Mutation_p.V50A	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	50	Ubiquitin-like.						zinc ion binding				0						CACAGAAATAACAGTTTCAAA	0.318												
FRMPD2	143162	broad.mit.edu	37	10	49395242	49395242	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:49395242C>A	uc001jgi.2	-	17	2366	c.2259G>T	c.(2257-2259)ATG>ATT	p.M753I	FRMPD2_uc001jgh.2_Missense_Mutation_p.M721I|FRMPD2_uc001jgj.2_Missense_Mutation_p.M731I	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	753					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TACCTGCATGCATGCTCTGAA	0.577												
FRMPD2	143162	broad.mit.edu	37	10	49400886	49400886	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:49400886C>T	uc001jgi.2	-	16	2113	c.2006G>A	c.(2005-2007)CGG>CAG	p.R669Q	FRMPD2_uc001jgh.2_Missense_Mutation_p.R637Q|FRMPD2_uc001jgj.2_Missense_Mutation_p.R647Q	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	669					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		AGGCTTAGACCGGGCCTGGTG	0.463												
FRMPD2	143162	broad.mit.edu	37	10	49447676	49447676	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:49447676G>A	uc001jgi.2	-	7	867	c.760C>T	c.(760-762)CAC>TAC	p.H254Y	FRMPD2_uc001jgh.2_Missense_Mutation_p.H223Y|FRMPD2_uc001jgj.2_Missense_Mutation_p.H232Y	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	254					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		CAGTGACTGTGTGTCAAGGTG	0.512												
C10orf71	118461	broad.mit.edu	37	10	50532305	50532305	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:50532305C>T	uc010qgp.1	+	3	2054	c.1715C>T	c.(1714-1716)CCC>CTC	p.P572L		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	572											0						CACATCAATCCCCAGAAGGAC	0.537												
OGDHL	55753	broad.mit.edu	37	10	50946030	50946030	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:50946030A>G	uc001jie.2	-	19	2622	c.2480T>C	c.(2479-2481)GTG>GCG	p.V827A	OGDHL_uc009xog.2_Missense_Mutation_p.V854A|OGDHL_uc010qgt.1_Missense_Mutation_p.V770A|OGDHL_uc010qgu.1_Missense_Mutation_p.V618A	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	827					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						CCGGCGCAGCACGTGGAAGTA	0.652												
OGDHL	55753	broad.mit.edu	37	10	50957801	50957801	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:50957801A>G	uc001jie.2	-	8	1100	c.958T>C	c.(958-960)TTT>CTT	p.F320L	OGDHL_uc009xog.2_Missense_Mutation_p.F347L|OGDHL_uc010qgt.1_Missense_Mutation_p.F263L|OGDHL_uc010qgu.1_Missense_Mutation_p.F111L|OGDHL_uc009xoh.2_Missense_Mutation_p.F111L	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	320					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TTGGGGTCAAACTGGCAGAAG	0.662												
BICC1	80114	broad.mit.edu	37	10	60562876	60562876	+	Silent	SNP	T	T	C	rs139787636		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:60562876T>C	uc001jki.1	+	15	2055	c.2055T>C	c.(2053-2055)GCT>GCC	p.A685A	BICC1_uc001jkj.1_Silent_p.A326A	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	685					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						AACTGAGTGCTACCGAAAGCC	0.512												
PHYHIPL	84457	broad.mit.edu	37	10	60994089	60994089	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:60994089A>G	uc001jkk.3	+	2	398	c.132A>G	c.(130-132)ATA>ATG	p.I44M	PHYHIPL_uc001jkl.3_Translation_Start_Site|PHYHIPL_uc001jkm.3_Missense_Mutation_p.I18M	NM_032439	NP_115815	Q96FC7	PHIPL_HUMAN	phytanoyl-CoA 2-hydroxylase interacting	44											0						ACAGTGGCATAGCAGAGATGG	0.338												
FAM13C	220965	broad.mit.edu	37	10	61112119	61112119	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:61112119C>T	uc001jkn.2	-	4	369	c.235G>A	c.(235-237)GTA>ATA	p.V79I	FAM13C_uc001jko.2_Missense_Mutation_p.V79I|FAM13C_uc010qid.1_5'UTR|FAM13C_uc010qie.1_5'UTR|FAM13C_uc010qif.1_Missense_Mutation_p.V101I|FAM13C_uc001jkp.2_5'UTR	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	79										ovary(2)	2						GGTCGCAATACGCTGTCCACC	0.607												
SLC16A9	220963	broad.mit.edu	37	10	61413938	61413938	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:61413938A>G	uc010qig.1	-	5	1295	c.846T>C	c.(844-846)CTT>CTC	p.L282L		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	282	Extracellular (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						TCCTCTTGGCAAGCTGTTTGC	0.373												
ANK3	288	broad.mit.edu	37	10	61830159	61830159	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:61830159T>C	uc001jky.2	-	37	10672	c.10480A>G	c.(10480-10482)ACT>GCT	p.T3494A	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3494					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTCTGATCAGTCTTATCAGGA	0.443												
ANK3	288	broad.mit.edu	37	10	61832609	61832609	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:61832609A>G	uc001jky.2	-	37	8222	c.8030T>C	c.(8029-8031)GTT>GCT	p.V2677A	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2677					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTGGGAGAGAACCATCTTCTC	0.562												
ARID5B	84159	broad.mit.edu	37	10	63852092	63852092	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:63852092T>C	uc001jlt.1	+	10	2896	c.2870T>C	c.(2869-2871)GTA>GCA	p.V957A		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	957					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					GCCTGTCGGGTATCACCCATG	0.522												
JMJD1C	221037	broad.mit.edu	37	10	64944406	64944406	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:64944406A>G	uc001jmn.2	-	21	7223	c.6923T>C	c.(6922-6924)GTA>GCA	p.V2308A	JMJD1C_uc001jml.2_Missense_Mutation_p.V2071A|JMJD1C_uc001jmm.2_Missense_Mutation_p.V2020A|JMJD1C_uc010qiq.1_Missense_Mutation_p.V2126A|JMJD1C_uc009xpi.2_Missense_Mutation_p.V2126A|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmo.2_Missense_Mutation_p.V215A	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	2308	JmjC.				blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding	p.V2071E(1)		ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					ATCAGGACGTACAAAAAATCC	0.358												
JMJD1C	221037	broad.mit.edu	37	10	64967249	64967249	+	Missense_Mutation	SNP	T	T	C	rs139881253	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:64967249T>C	uc001jmn.2	-	10	4480	c.4180A>G	c.(4180-4182)ACC>GCC	p.T1394A	JMJD1C_uc001jml.2_Missense_Mutation_p.T1175A|JMJD1C_uc001jmm.2_Missense_Mutation_p.T1106A|JMJD1C_uc010qiq.1_Missense_Mutation_p.T1212A|JMJD1C_uc009xpi.2_Missense_Mutation_p.T1212A|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc009xpk.1_Missense_Mutation_p.T431A	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	1394					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					TCCGTTTTGGTATTACACATC	0.423												
CTNNA3	29119	broad.mit.edu	37	10	67748557	67748557	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:67748557T>C	uc009xpn.1	-	16	2283	c.2160_splice	c.e16-1	p.R720_splice	CTNNA3_uc001jmw.2_Splice_Site_p.R720_splice	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3						cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						CCTTTGCCCCTGGAAAAAAAT	0.383												
HERC4	26091	broad.mit.edu	37	10	69785304	69785304	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:69785304G>A	uc001jng.3	-	8	1218	c.907C>T	c.(907-909)CGG>TGG	p.R303W	HERC4_uc001jnf.3_RNA|HERC4_uc001jnh.3_Missense_Mutation_p.R303W|HERC4_uc009xpr.2_Missense_Mutation_p.R303W|HERC4_uc001jni.3_Missense_Mutation_p.R47W|HERC4_uc001jnj.2_Missense_Mutation_p.R303W	NM_022079	NP_071362	Q5GLZ8	HERC4_HUMAN	hect domain and RLD 4 isoform a	303	RCC1 6.				cell differentiation|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|spermatogenesis	cytosol	ubiquitin-protein ligase activity			ovary(1)|breast(1)|skin(1)	3						ACACCTTACCGTCCACAAGCA	0.383												
DNA2	1763	broad.mit.edu	37	10	70191674	70191674	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:70191674T>C	uc001jof.2	-	13	2186	c.2186A>G	c.(2185-2187)TAC>TGC	p.Y729C	DNA2_uc001jog.1_Missense_Mutation_p.Y643C|DNA2_uc001joh.1_RNA	NM_001080449	NP_001073918	P51530	DNA2L_HUMAN	DNA replication helicase 2 homolog	643					base-excision repair|DNA replication, removal of RNA primer|mitochondrial DNA repair|mitochondrial DNA replication|positive regulation of DNA replication|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	mitochondrial nucleoid|nucleoplasm	5'-flap endonuclease activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|site-specific endodeoxyribonuclease activity, specific for altered base				0						GATGAGTGTGTAGTCTTTTGA	0.353												
TET1	80312	broad.mit.edu	37	10	70405606	70405606	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:70405606A>G	uc001jok.3	+	4	3625	c.3120A>G	c.(3118-3120)CCA>CCG	p.P1040P		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1040					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						AGTTGCCACCAAGAAATAATG	0.373												
DDX50	79009	broad.mit.edu	37	10	70672961	70672961	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:70672961C>T	uc001jou.2	+	5	790	c.683C>T	c.(682-684)GCC>GTC	p.A228V	DDX50_uc001jot.2_Missense_Mutation_p.A228V|DDX50_uc010qjc.1_Missense_Mutation_p.A228V	NM_024045	NP_076950	Q9BQ39	DDX50_HUMAN	nucleolar protein GU2	228	Helicase ATP-binding.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1						AACCAAGTAGCCAAAGACTTC	0.358												
SUPV3L1	6832	broad.mit.edu	37	10	70951476	70951476	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:70951476T>C	uc001jpe.1	+	6	862	c.807T>C	c.(805-807)GCT>GCC	p.A269A	SUPV3L1_uc010qjd.1_Silent_p.A138A	NM_003171	NP_003162	Q8IYB8	SUV3_HUMAN	suppressor of var1, 3-like 1 precursor	269	Helicase ATP-binding.				DNA duplex unwinding	mitochondrial nucleoid|nucleus	ATP binding|DNA binding|DNA helicase activity|RNA binding			urinary_tract(1)|ovary(1)	2						GGAAACAGGCTTCACATGTTT	0.358												
HKDC1	80201	broad.mit.edu	37	10	71003054	71003054	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:71003054C>A	uc001jpf.3	+	7	941	c.808C>A	c.(808-810)CTG>ATG	p.L270M	HKDC1_uc010qje.1_Missense_Mutation_p.L133M	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	270					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						CGACGGGGCCCTGGAGGACAT	0.592												
HK1	3098	broad.mit.edu	37	10	71128328	71128328	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:71128328A>G	uc001jpl.3	+	5	633	c.532A>G	c.(532-534)AGC>GGC	p.S178G	HK1_uc001jpg.3_Missense_Mutation_p.S166G|HK1_uc001jph.3_Missense_Mutation_p.S182G|HK1_uc001jpi.3_Missense_Mutation_p.S182G|HK1_uc001jpj.3_Missense_Mutation_p.S213G|HK1_uc001jpk.3_Missense_Mutation_p.S177G|HK1_uc009xqd.2_Missense_Mutation_p.S56G	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	178	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						ATTTAAAGCGAGCGGAGTGGA	0.567												
CDH23	64072	broad.mit.edu	37	10	73498265	73498265	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:73498265C>T	uc001jrx.3	+	33	4597	c.4220C>T	c.(4219-4221)ACT>ATT	p.T1407I	C10orf105_uc001jsb.1_5'Flank|CDH23_uc001jsc.1_Missense_Mutation_p.T214I	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1407	Cadherin 13.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GTCTACATCACTGTGCTGGAC	0.617												
CDH23	64072	broad.mit.edu	37	10	73553070	73553070	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:73553070A>T	uc001jrx.3	+	46	6762	c.6385A>T	c.(6385-6387)AAT>TAT	p.N2129Y	CDH23_uc001jsg.3_5'Flank|CDH23_uc001jsh.3_5'Flank	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2129	Cadherin 20.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CCGTGTTGGTAATGCCACCAT	0.597												
DNAJB12	54788	broad.mit.edu	37	10	74095633	74095633	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:74095633C>A	uc010qjv.1	-	8	1315	c.1165G>T	c.(1165-1167)GCA>TCA	p.A389S	DNAJB12_uc001jsz.2_Missense_Mutation_p.A389S|DNAJB12_uc001jta.2_Missense_Mutation_p.A389S	NM_017626	NP_060096	Q9NXW2	DJB12_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 12	355					protein folding	endoplasmic reticulum|integral to membrane	heat shock protein binding|unfolded protein binding				0						ATCTTCTGTGCTCTGTGGTAC	0.592												
P4HA1	5033	broad.mit.edu	37	10	74813265	74813265	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:74813265T>C	uc010qka.1	-	7	881	c.547A>G	c.(547-549)ACG>GCG	p.T183A	P4HA1_uc001jtg.2_Missense_Mutation_p.T183A|P4HA1_uc001jth.2_Missense_Mutation_p.T183A|P4HA1_uc010qkb.1_Missense_Mutation_p.T183A|P4HA1_uc001jti.2_RNA	NM_001142595	NP_001136067	P13674	P4HA1_HUMAN	prolyl 4-hydroxylase, alpha I subunit isoform 2	183						endoplasmic reticulum lumen|mitochondrion	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			ovary(1)	1	Prostate(51;0.0198)				Hydralazine(DB01275)|L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CACAGTTCCGTATGGTAATAA	0.408												
TTC18	118491	broad.mit.edu	37	10	75051441	75051441	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:75051441A>G	uc009xrc.2	-	19	2308	c.2187T>C	c.(2185-2187)GCT>GCC	p.A729A	TTC18_uc001jty.2_Silent_p.A729A|TTC18_uc001jtv.3_5'Flank|TTC18_uc001jtw.3_5'Flank|TTC18_uc001jtx.2_Silent_p.A110A	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	729	TPR 3.						binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					CCAAGCAAGTAGCATCCTCAA	0.393												
USP54	159195	broad.mit.edu	37	10	75331193	75331193	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:75331193A>G	uc001juo.2	-	2	243	c.226T>C	c.(226-228)TTT>CTT	p.F76L	USP54_uc001jup.2_Missense_Mutation_p.F76L|USP54_uc010qkl.1_Missense_Mutation_p.F76L	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	76					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					AGAGCGCAAAAGATGCAGGAA	0.423												
NDST2	8509	broad.mit.edu	37	10	75563469	75563469	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:75563469T>C	uc001jvk.2	-	11	2809	c.2005A>G	c.(2005-2007)ACT>GCT	p.T669A	NDST2_uc010qks.1_Missense_Mutation_p.T295A|NDST2_uc010qkt.1_Missense_Mutation_p.T546A|NDST2_uc001jvl.1_Missense_Mutation_p.T76A|NDST2_uc009xro.2_Missense_Mutation_p.T295A|NDST2_uc010qku.1_Missense_Mutation_p.T544A	NM_003635	NP_003626	P52849	NDST2_HUMAN	heparan glucosaminyl	669	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 2.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			ovary(1)	1	Prostate(51;0.0112)					AGGAAATCAGTGCTGGCATTG	0.488												
DLG5	9231	broad.mit.edu	37	10	79589141	79589141	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:79589141C>T	uc001jzk.2	-	12	2227	c.2157G>A	c.(2155-2157)CCG>CCA	p.P719P	DLG5_uc001jzj.2_Silent_p.P474P|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Silent_p.P323P	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	719	PDZ 2.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TGATGTGCAGCGGCGTGACCA	0.627												
DLG5	9231	broad.mit.edu	37	10	79590513	79590513	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:79590513A>G	uc001jzk.2	-	10	1937	c.1867T>C	c.(1867-1869)TTC>CTC	p.F623L	DLG5_uc001jzj.2_Missense_Mutation_p.F378L|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.F227L	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	623	PDZ 1.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TCCCTCTCGAACTCTACAACT	0.557												
POLR3A	11128	broad.mit.edu	37	10	79769355	79769355	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:79769355G>T	uc001jzn.2	-	14	1943	c.1849C>A	c.(1849-1851)CTG>ATG	p.L617M		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	617					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			TTGGTTCGCAGGTTGGCCCTC	0.577												
ZMIZ1	57178	broad.mit.edu	37	10	81056311	81056311	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:81056311G>A	uc001kaf.2	+	13	1886	c.1314G>A	c.(1312-1314)AGG>AGA	p.R438R	ZMIZ1_uc001kag.2_Silent_p.R314R|ZMIZ1_uc001kah.1_3'UTR	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	438	Pro-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			ACCCCCCGAGGCCACTCACCT	0.627												
C10orf58	84293	broad.mit.edu	37	10	82185681	82185681	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:82185681T>C	uc001kcc.3	+	4	490	c.330T>C	c.(328-330)TAT>TAC	p.Y110Y	C10orf58_uc001kcd.3_Silent_p.Y99Y|C10orf58_uc001kce.3_Silent_p.Y110Y|C10orf58_uc001kcf.3_Silent_p.Y110Y	NM_032333	NP_115709	Q9BRX8	CJ058_HUMAN	hypothetical protein LOC84293 precursor	110						extracellular region					0			Colorectal(32;0.229)			TCCCCCTCTATGCAGTGGTAA	0.512												
GRID1	2894	broad.mit.edu	37	10	87615784	87615784	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:87615784A>G	uc001kdl.1	-	7	1214	c.1113_splice	c.e7+1	p.K371_splice	GRID1_uc009xsu.1_Splice_Site	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1							cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CCTCACACGTACCTTTTTGAT	0.557										Multiple Myeloma(13;0.14)		
C10orf116	10974	broad.mit.edu	37	10	88728350	88728350	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:88728350G>A	uc001ked.2	+	1	163	c.49G>A	c.(49-51)GCC>ACC	p.A17T	AGAP11_uc001kee.2_5'Flank|uc001kec.1_3'UTR	NM_006829	NP_006820	Q15847	APM2_HUMAN	adipose specific 2	17											0						GGAGGGGACCGCCCAGGAAGC	0.652												
ATAD1	84896	broad.mit.edu	37	10	89574266	89574266	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:89574266A>G	uc001key.1	-	1	374	c.91T>C	c.(91-93)TAC>CAC	p.Y31H	ATAD1_uc009xth.1_RNA|ATAD1_uc001kez.1_Missense_Mutation_p.Y31H	NM_032810	NP_116199	Q8NBU5	ATAD1_HUMAN	ATPase family, AAA domain containing 1	31						peroxisome	ATP binding|nucleoside-triphosphatase activity			large_intestine(1)|ovary(1)	2		all_cancers(4;6.78e-12)|Prostate(4;3.56e-12)|all_epithelial(4;5.58e-09)|Melanoma(5;0.0273)|Breast(4;0.0424)|all_hematologic(4;0.0846)|Colorectal(252;0.207)|Glioma(4;0.217)|all_neural(4;0.224)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00131)|GBM - Glioblastoma multiforme(1;1.1e-32)|Lung(2;1.4e-05)|LUSC - Lung squamous cell carcinoma(2;2.69e-05)|Colorectal(12;7.09e-05)|COAD - Colon adenocarcinoma(12;0.000261)|STAD - Stomach adenocarcinoma(243;0.235)		ATAGTAAAGTATGTCACTGCA	0.358												
IFIT3	3437	broad.mit.edu	37	10	91098570	91098570	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:91098570T>C	uc001kgf.2	+	2	387	c.158T>C	c.(157-159)ATG>ACG	p.M53T	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|uc001kgd.2_Intron|IFIT3_uc001kgg.2_Missense_Mutation_p.M53T	NM_001549	NP_001540	O14879	IFIT3_HUMAN	interferon-induced protein with	53	TPR 1.				type I interferon-mediated signaling pathway		protein binding			central_nervous_system(1)	1						AAAGCTACAATGTACAACTTG	0.413												
HECTD2	143279	broad.mit.edu	37	10	93185148	93185148	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:93185148T>C	uc001khl.2	+	2	349	c.249T>C	c.(247-249)GTT>GTC	p.V83V	LOC100188947_uc010qnl.1_Intron|HECTD2_uc001khk.2_Silent_p.V83V|HECTD2_uc010qnm.1_Silent_p.V83V|HECTD2_uc001khm.2_RNA	NM_182765	NP_877497	Q5U5R9	HECD2_HUMAN	HECT domain containing 2 isoform a	83					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			skin(1)	1						CACATCTTGTTTTCCCTAACA	0.274												
TNKS2	80351	broad.mit.edu	37	10	93596680	93596680	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:93596680T>C	uc001khp.2	+	13	1749	c.1452T>C	c.(1450-1452)GGT>GGC	p.G484G		NM_025235	NP_079511	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related	484					positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding			kidney(3)|skin(3)|ovary(1)|lung(1)	8		Colorectal(252;0.162)				TTTTAGAGGGTATCTCATTAG	0.403												
BTAF1	9044	broad.mit.edu	37	10	93740227	93740227	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:93740227T>C	uc001khr.2	+	15	1765	c.1667T>C	c.(1666-1668)CTT>CCT	p.L556P	BTAF1_uc001khs.1_Missense_Mutation_p.L226P|BTAF1_uc001kht.1_5'UTR	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	556	HEAT 4.				negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				TCATCTTGGCTTATACCTATA	0.353												
CPEB3	22849	broad.mit.edu	37	10	93940759	93940759	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:93940759A>G	uc001khw.1	-	4	1356	c.1183T>C	c.(1183-1185)TTC>CTC	p.F395L	CPEB3_uc001khu.1_Missense_Mutation_p.F395L|CPEB3_uc001khv.1_Missense_Mutation_p.F372L|CPEB3_uc010qnn.1_Missense_Mutation_p.F372L	NM_014912	NP_055727	Q8NE35	CPEB3_HUMAN	cytoplasmic polyadenylation element binding	395							nucleotide binding|RNA binding				0		Colorectal(252;0.0869)				GGATGATGGAAATTTATCCCC	0.264												
MARCH5	54708	broad.mit.edu	37	10	94070932	94070932	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:94070932A>C	uc001khx.1	+	2	408	c.76A>C	c.(76-78)ACA>CCA	p.T26P	MARCH5_uc010qno.1_5'UTR	NM_017824	NP_060294	Q9NX47	MARH5_HUMAN	membrane-associated ring finger (C3HC4) 5	26	RING-CH-type.				cell aging|protein autoubiquitination|protein localization in mitochondrion|protein polyubiquitination|regulation of mitochondrial fission	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	GTPase binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1						AGATGATAGAACAGCTGAATG	0.428												
CYP26A1	1592	broad.mit.edu	37	10	94834724	94834724	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:94834724G>A	uc001kil.2	+	3	648	c.603G>A	c.(601-603)GCG>GCA	p.A201A	CYP26A1_uc001kik.1_Silent_p.A132A|CYP26A1_uc001kim.1_Silent_p.A99A	NM_000783	NP_000774	O43174	CP26A_HUMAN	cytochrome P450, family 26, subfamily A,	201					negative regulation of retinoic acid receptor signaling pathway|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|oxygen binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		Colorectal(252;0.122)				CCCAACTGGCGGGCGACGGGG	0.652												
PDE6C	5146	broad.mit.edu	37	10	95399875	95399875	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:95399875T>C	uc001kiu.3	+	12	1669	c.1531T>C	c.(1531-1533)TTC>CTC	p.F511L		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	511					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				CGAATTCCGCTTCAGTGACTT	0.413												
PDE6C	5146	broad.mit.edu	37	10	95400298	95400298	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:95400298T>G	uc001kiu.3	+	13	1859	c.1721T>G	c.(1720-1722)ATG>AGG	p.M574R		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	574					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				GGGCAGACCATGTTTACTTTG	0.448												
PLCE1	51196	broad.mit.edu	37	10	96081696	96081696	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:96081696G>T	uc001kjk.2	+	30	7015	c.6381G>T	c.(6379-6381)GAG>GAT	p.E2127D	PLCE1_uc010qnx.1_Missense_Mutation_p.E2111D|PLCE1_uc001kjm.2_Missense_Mutation_p.E1819D|PLCE1_uc001kjp.2_Missense_Mutation_p.E485D	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	2127					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				ATGACAAAGAGGTGATCTTGA	0.388												
HELLS	3070	broad.mit.edu	37	10	96306134	96306134	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:96306134G>A	uc001kjt.2	+	2	137	c.32G>A	c.(31-33)GGC>GAC	p.G11D	HELLS_uc001kjs.2_5'UTR|HELLS_uc009xul.2_Missense_Mutation_p.G11D|HELLS_uc009xum.2_Missense_Mutation_p.G11D|HELLS_uc009xun.2_5'UTR|HELLS_uc009xuo.2_Missense_Mutation_p.G11D|HELLS_uc001kju.2_5'UTR|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_5'UTR|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	11					cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		CCCCCGTCAGGCTCGGAGGCT	0.488												
CYP2C18	1562	broad.mit.edu	37	10	96493085	96493085	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:96493085T>C	uc001kjv.3	+	8	1507	c.1181T>C	c.(1180-1182)GTG>GCG	p.V394A	CYP2C18_uc001kjw.3_Missense_Mutation_p.V335A|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	394					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		CTGACTTCTGTGCTGCACAAT	0.343												
ALDH18A1	5832	broad.mit.edu	37	10	97387227	97387227	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:97387227A>G	uc001kkz.2	-	9	1292	c.1050T>C	c.(1048-1050)GGT>GGC	p.G350G	ALDH18A1_uc001kky.2_Silent_p.G348G|ALDH18A1_uc010qog.1_Silent_p.G239G|ALDH18A1_uc010qoh.1_Silent_p.G138G	NM_002860	NP_002851	P54886	P5CS_HUMAN	pyrroline-5-carboxylate synthetase isoform 1	350	Glutamate 5-kinase.				proline biosynthetic process	mitochondrial inner membrane	ATP binding|glutamate 5-kinase activity|glutamate-5-semialdehyde dehydrogenase activity			pancreas(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0402)		Epithelial(162;9.1e-07)|all cancers(201;2.55e-05)	L-Glutamic Acid(DB00142)	AAAAGAAGGTACCAACTTTCT	0.478												
ALDH18A1	5832	broad.mit.edu	37	10	97392721	97392721	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:97392721A>G	uc001kkz.2	-	7	1045	c.803T>C	c.(802-804)GTA>GCA	p.V268A	ALDH18A1_uc001kky.2_Missense_Mutation_p.V266A|ALDH18A1_uc010qog.1_Missense_Mutation_p.V157A|ALDH18A1_uc010qoh.1_Missense_Mutation_p.V56A	NM_002860	NP_002851	P54886	P5CS_HUMAN	pyrroline-5-carboxylate synthetase isoform 1	268	Glutamate 5-kinase.				proline biosynthetic process	mitochondrial inner membrane	ATP binding|glutamate 5-kinase activity|glutamate-5-semialdehyde dehydrogenase activity			pancreas(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0402)		Epithelial(162;9.1e-07)|all cancers(201;2.55e-05)	L-Glutamic Acid(DB00142)	TGTACCTTCTACATCTGAAAG	0.378												
ENTPD1	953	broad.mit.edu	37	10	97607278	97607278	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:97607278T>C	uc001klh.3	+	7	1213	c.889T>C	c.(889-891)TAC>CAC	p.Y297H	ENTPD1_uc001kli.3_Missense_Mutation_p.Y304H|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Missense_Mutation_p.Y309H|ENTPD1_uc010qok.1_Missense_Mutation_p.Y189H|ENTPD1_uc010qol.1_Missense_Mutation_p.Y189H|ENTPD1_uc010qom.1_Intron|ENTPD1_uc010qon.1_Missense_Mutation_p.Y159H|ENTPD1_uc009xva.2_Missense_Mutation_p.Y159H|ENTPD1_uc009xuz.2_Intron	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	297	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		AAGTGACCTTTACAAGACCCC	0.418												
ZNF518A	9849	broad.mit.edu	37	10	97916643	97916643	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:97916643T>A	uc001klp.2	+	6	1421	c.564T>A	c.(562-564)TAT>TAA	p.Y188*	ZNF518A_uc001klo.1_Intron|ZNF518A_uc001klq.2_Nonsense_Mutation_p.Y188*|ZNF518A_uc001klr.2_Nonsense_Mutation_p.Y188*	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	188					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		AGAGTGTATATACTTTACTGA	0.353												
ZNF518A	9849	broad.mit.edu	37	10	97918869	97918869	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:97918869A>G	uc001klp.2	+	6	3647	c.2790A>G	c.(2788-2790)ATA>ATG	p.I930M	ZNF518A_uc001klo.1_Missense_Mutation_p.I400M|ZNF518A_uc001klq.2_Missense_Mutation_p.I930M|ZNF518A_uc001klr.2_Missense_Mutation_p.I930M	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	930					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		AAAAAACTATAATTGTTCAGA	0.348												
ZNF518A	9849	broad.mit.edu	37	10	97920061	97920061	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:97920061C>T	uc001klp.2	+	6	4839	c.3982C>T	c.(3982-3984)CGG>TGG	p.R1328W	ZNF518A_uc001klo.1_Missense_Mutation_p.R798W|ZNF518A_uc001klq.2_Missense_Mutation_p.R1328W|ZNF518A_uc001klr.2_Missense_Mutation_p.R1328W	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	1328					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		CAGAACTTTGCGGCTTTTCCC	0.393												
TM9SF3	56889	broad.mit.edu	37	10	98287919	98287919	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:98287919C>T	uc001kmm.3	-	12	1627	c.1410G>A	c.(1408-1410)ACG>ACA	p.T470T	TM9SF3_uc010qot.1_Silent_p.T470T	NM_020123	NP_064508	Q9HD45	TM9S3_HUMAN	transmembrane 9 superfamily member 3 precursor	470						integral to membrane	binding				0		Colorectal(252;0.158)		Epithelial(162;1.84e-09)|all cancers(201;2.84e-08)		CCCAGAAAGACGTGAAGATGA	0.393												
RRP12	23223	broad.mit.edu	37	10	99126849	99126849	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:99126849T>A	uc001knf.2	-	26	3135	c.2996A>T	c.(2995-2997)CAC>CTC	p.H999L	RRP12_uc001kne.2_Missense_Mutation_p.H14L|RRP12_uc009xvl.2_Missense_Mutation_p.H116L|RRP12_uc009xvm.2_Missense_Mutation_p.H717L|RRP12_uc010qou.1_Missense_Mutation_p.H938L|RRP12_uc009xvn.2_Missense_Mutation_p.H899L	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	999						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		CATGCGGAAGTGCCGCCGCAT	0.607												
RRP12	23223	broad.mit.edu	37	10	99132949	99132949	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:99132949G>A	uc001knf.2	-	18	2174	c.2035C>T	c.(2035-2037)CGT>TGT	p.R679C	RRP12_uc009xvl.2_5'UTR|RRP12_uc009xvm.2_Missense_Mutation_p.R397C|RRP12_uc010qou.1_Missense_Mutation_p.R618C|RRP12_uc009xvn.2_Missense_Mutation_p.R579C	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	679						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		ACTTCAGCACGGTCAGCCTCT	0.607												
RRP12	23223	broad.mit.edu	37	10	99148278	99148278	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:99148278T>C	uc001knf.2	-	7	996	c.857A>G	c.(856-858)AAG>AGG	p.K286R	RRP12_uc009xvm.2_Intron|RRP12_uc010qou.1_Missense_Mutation_p.K225R|RRP12_uc009xvn.2_Missense_Mutation_p.K186R	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	286						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		GATGCAGAACTTGGCAGTGGA	0.582												
UBTD1	80019	broad.mit.edu	37	10	99330203	99330203	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:99330203C>T	uc001knv.1	+	3	800	c.607C>T	c.(607-609)CGG>TGG	p.R203W	ANKRD2_uc001knw.2_5'Flank|ANKRD2_uc009xvu.2_5'Flank	NM_024954	NP_079230	Q9HAC8	UBTD1_HUMAN	ubiquitin domain containing 1	203	Ubiquitin-like.										0		Colorectal(252;0.162)		Epithelial(162;3.04e-10)|all cancers(201;2.86e-08)		AGACCGCACACGGCTCCAGGA	0.622												
ZFYVE27	118813	broad.mit.edu	37	10	99498302	99498302	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:99498302T>C	uc001koo.2	+	2	268	c.68T>C	c.(67-69)CTG>CCG	p.L23P	ZFYVE27_uc001kon.2_Missense_Mutation_p.L23P|ZFYVE27_uc001koq.2_Missense_Mutation_p.L23P|ZFYVE27_uc010qpa.1_Missense_Mutation_p.L23P|ZFYVE27_uc001kop.2_Missense_Mutation_p.L23P|ZFYVE27_uc010qpb.1_Intron|ZFYVE27_uc010qpc.1_RNA|ZFYVE27_uc010qpd.1_Missense_Mutation_p.L23P|ZFYVE27_uc001kok.1_RNA|ZFYVE27_uc001kol.1_Missense_Mutation_p.L23P|ZFYVE27_uc001kom.1_Missense_Mutation_p.L23P	NM_144588	NP_653189	Q5T4F4	ZFY27_HUMAN	zinc finger, FYVE domain containing 27 isoform	23	Cytoplasmic (Potential).				cell death|nerve growth factor receptor signaling pathway|neuron projection development|protein localization in plasma membrane	axon|dendrite|endoplasmic reticulum membrane|growth cone membrane|integral to membrane|recycling endosome membrane	metal ion binding|protein binding			ovary(1)	1		Colorectal(252;0.0846)		Epithelial(162;7.08e-10)|all cancers(201;5.18e-08)		GAGGCTCCCCTGGAGTCTCCA	0.488												
LOXL4	84171	broad.mit.edu	37	10	100012116	100012116	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:100012116G>A	uc001kpa.1	-	12	2096	c.1945C>T	c.(1945-1947)CCC>TCC	p.P649S		NM_032211	NP_115587	Q96JB6	LOXL4_HUMAN	lysyl oxidase-like 4 precursor	649	Lysyl-oxidase like.					extracellular space|membrane	copper ion binding|protein binding|scavenger receptor activity			ovary(3)|breast(1)|skin(1)	5		Colorectal(252;0.234)		Epithelial(162;2.14e-11)|all cancers(201;2.49e-09)		ATACCTGTGGGGCAGTTTGTG	0.537												
PYROXD2	84795	broad.mit.edu	37	10	100167720	100167720	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:100167720G>A	uc001kpc.2	-	3	268	c.182C>T	c.(181-183)GCC>GTC	p.A61V	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA|PYROXD2_uc010qpe.1_Missense_Mutation_p.A61V	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	61	FAD (Potential).						oxidoreductase activity			central_nervous_system(1)	1						CTCGAAGACGGCGGTGTTCAC	0.627												
SLC25A28	81894	broad.mit.edu	37	10	101373648	101373648	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:101373648C>T	uc001kpx.2	-	2	454	c.325G>A	c.(325-327)GCC>ACC	p.A109T	SLC25A28_uc001kpy.2_5'UTR|SLC25A28_uc009xwk.1_Missense_Mutation_p.A109T	NM_031212	NP_112489	Q96A46	MFRN2_HUMAN	solute carrier family 25, member 28	109	Solcar 1.				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Colorectal(252;0.234)		Epithelial(162;2.57e-10)|all cancers(201;2.01e-08)		CGATAGCGGGCAGCTGGGTCA	0.572												
ABCC2	1244	broad.mit.edu	37	10	101567244	101567244	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:101567244T>C	uc001kqf.2	+	12	1773	c.1634T>C	c.(1633-1635)GTA>GCA	p.V545A		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	545	ABC transmembrane type-1 1.|Helical; Name=10; (By similarity).					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	CTACAGTGTGTAGTAATATTC	0.478												
ABCC2	1244	broad.mit.edu	37	10	101591749	101591749	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:101591749T>C	uc001kqf.2	+	23	3258	c.3119T>C	c.(3118-3120)ATA>ACA	p.I1040T		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	1040	ABC transmembrane type-1 2.|Helical; Name=13; (By similarity).					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	TTTGTGTTCATAGCACATTTC	0.433												
DNMBP	23268	broad.mit.edu	37	10	101656041	101656041	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:101656041T>C	uc001kqj.2	-	10	3126	c.3034A>G	c.(3034-3036)ACT>GCT	p.T1012A	DNMBP_uc010qpl.1_Intron|DNMBP_uc001kqg.2_Missense_Mutation_p.T300A|DNMBP_uc001kqh.2_Missense_Mutation_p.T644A	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	1012	BAR.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		GCAAAGCCAGTGAGATGCTTC	0.488												
SEC31B	25956	broad.mit.edu	37	10	102249885	102249885	+	Missense_Mutation	SNP	G	G	A	rs146812157	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:102249885G>A	uc001krc.1	-	21	2947	c.2845C>T	c.(2845-2847)CGC>TGC	p.R949C	SEC31B_uc010qpo.1_Missense_Mutation_p.R948C|SEC31B_uc001krd.1_Missense_Mutation_p.R486C|SEC31B_uc001krf.1_Intron|SEC31B_uc001kre.1_Intron	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	949	Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		GAGACCATGCGGCCGGGACCT	0.627												
FAM178A	55719	broad.mit.edu	37	10	102690834	102690834	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:102690834G>A	uc001krt.3	+	9	2977	c.2435G>A	c.(2434-2436)CGG>CAG	p.R812Q	FAM178A_uc001krs.2_Missense_Mutation_p.R812Q	NM_018121	NP_060591	Q8IX21	F178A_HUMAN	hypothetical protein LOC55719 isoform 1	812											0						TGGCTGTTTCGGGTAAGAGGA	0.363												
FBXW4	6468	broad.mit.edu	37	10	103371117	103371117	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:103371117A>G	uc001kto.2	-	9	1516	c.1170T>C	c.(1168-1170)CGT>CGC	p.R390R		NM_022039	NP_071322	P57775	FBXW4_HUMAN	F-box and WD repeat domain containing 4	390					ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	ubiquitin ligase complex				skin(1)	1		Colorectal(252;0.123)		Epithelial(162;4.35e-08)|all cancers(201;1.92e-06)		TGGTGGTGAGACGCAGGCAGT	0.597												
MGEA5	10724	broad.mit.edu	37	10	103553747	103553747	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:103553747T>C	uc001ktv.2	-	11	2436	c.1993A>G	c.(1993-1995)AGT>GGT	p.S665G	MGEA5_uc001ktu.2_Intron|MGEA5_uc010qqe.1_Missense_Mutation_p.S612G|MGEA5_uc009xws.2_Missense_Mutation_p.S612G	NM_012215	NP_036347	O60502	NCOAT_HUMAN	meningioma expressed antigen 5 (hyaluronidase)	665	Histone acetyltransferase activity (By similarity).				glycoprotein catabolic process	cytoplasm|nucleus	histone acetyltransferase activity|hyalurononglucosaminidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.207)		Epithelial(162;4.67e-09)|all cancers(201;2.54e-07)		GAAGAATGACTACGACACCCT	0.458												
MGEA5	10724	broad.mit.edu	37	10	103560141	103560141	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:103560141A>G	uc001ktv.2	-	8	1496	c.1053T>C	c.(1051-1053)AGT>AGC	p.S351S	MGEA5_uc001ktu.2_5'Flank|MGEA5_uc010qqe.1_Intron|MGEA5_uc009xws.2_Intron|MGEA5_uc001ktw.2_Silent_p.S351S|MGEA5_uc009xwt.2_Silent_p.S114S	NM_012215	NP_036347	O60502	NCOAT_HUMAN	meningioma expressed antigen 5 (hyaluronidase)	351					glycoprotein catabolic process	cytoplasm|nucleus	histone acetyltransferase activity|hyalurononglucosaminidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.207)		Epithelial(162;4.67e-09)|all cancers(201;2.54e-07)		TGGACACAGTACTATCTTCAC	0.328												
PITX3	5309	broad.mit.edu	37	10	103990855	103990855	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:103990855A>G	uc001kuu.1	-	4	479	c.325T>C	c.(325-327)TGG>CGG	p.W109R		NM_005029	NP_005020	O75364	PITX3_HUMAN	paired-like homeodomain 3	109	Homeobox.				dopaminergic neuron differentiation|lens morphogenesis in camera-type eye|midbrain development|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		Colorectal(252;0.00957)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		TTCTTGAACCACACCTGCGGG	0.751												
GBF1	8729	broad.mit.edu	37	10	104127249	104127249	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:104127249T>A	uc001kux.1	+	21	2811	c.2571T>A	c.(2569-2571)AAT>AAA	p.N857K	GBF1_uc001kuy.1_Missense_Mutation_p.N857K|GBF1_uc001kuz.1_Missense_Mutation_p.N858K	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	857	SEC7.				COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		TTCGCAAAAATCTGAAAGGTG	0.448												
GBF1	8729	broad.mit.edu	37	10	104129053	104129053	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:104129053A>G	uc001kux.1	+	24	3296	c.3056A>G	c.(3055-3057)CAT>CGT	p.H1019R	GBF1_uc001kuy.1_Missense_Mutation_p.H1019R|GBF1_uc001kuz.1_Missense_Mutation_p.H1020R	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1019					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		GCCCATCGTCATGGTGACATC	0.498												
GBF1	8729	broad.mit.edu	37	10	104129985	104129985	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:104129985C>T	uc001kux.1	+	27	3631	c.3391C>T	c.(3391-3393)CTA>TTA	p.L1131L	GBF1_uc001kuy.1_Silent_p.L1131L|GBF1_uc001kuz.1_Silent_p.L1132L	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1131					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		GCTGGAGTCACTACAGGAGCT	0.473												
CUEDC2	79004	broad.mit.edu	37	10	104183602	104183602	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:104183602G>A	uc001kvn.2	-	7	760	c.609C>T	c.(607-609)CGC>CGT	p.R203R	CUEDC2_uc001kvm.2_5'Flank	NM_024040	NP_076945	Q9H467	CUED2_HUMAN	CUE domain containing 2	203						cytoplasm|nucleus	protein binding				0		Colorectal(252;0.122)		Epithelial(162;9.17e-09)|all cancers(201;2.16e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		GGCCTCTGAGGCGTCTGGGCA	0.537												
SUFU	51684	broad.mit.edu	37	10	104268964	104268964	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:104268964A>G	uc001kvy.1	+	2	367	c.221A>G	c.(220-222)TAC>TGC	p.Y74C	SUFU_uc001kvw.1_Missense_Mutation_p.Y74C|SUFU_uc001kvx.2_Missense_Mutation_p.Y74C	NM_016169	NP_057253	Q9UMX1	SUFU_HUMAN	suppressor of fused	74					negative regulation of transcription from RNA polymerase II promoter|proteolysis|skeletal system development	cytoplasm|nucleus	identical protein binding|protein binding|signal transducer activity|transcription corepressor activity|transcription factor binding			central_nervous_system(4)|skin(2)|breast(1)	7		Colorectal(252;0.207)		Epithelial(162;1.36e-08)|all cancers(201;3.81e-07)|BRCA - Breast invasive adenocarcinoma(275;0.242)		GTTAGCATGTACAGGaatgtg	0.259			D|F|S		medulloblastoma	medulloblastoma			Medulloblastoma_associated_with_Germline_SUFU_Mutation			
SUFU	51684	broad.mit.edu	37	10	104389822	104389822	+	Splice_Site	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:104389822G>A	uc001kvy.1	+	12	1512	c.1366_splice	c.e12-1	p.F456_splice	SUFU_uc009xxe.1_Splice_Site|SUFU_uc009xxf.1_Splice_Site	NM_016169	NP_057253	Q9UMX1	SUFU_HUMAN	suppressor of fused						negative regulation of transcription from RNA polymerase II promoter|proteolysis|skeletal system development	cytoplasm|nucleus	identical protein binding|protein binding|signal transducer activity|transcription corepressor activity|transcription factor binding			central_nervous_system(4)|skin(2)|breast(1)	7		Colorectal(252;0.207)		Epithelial(162;1.36e-08)|all cancers(201;3.81e-07)|BRCA - Breast invasive adenocarcinoma(275;0.242)		TCCCTCCACAGTTCAAACTTC	0.562			D|F|S		medulloblastoma	medulloblastoma			Medulloblastoma_associated_with_Germline_SUFU_Mutation			
C10orf26	54838	broad.mit.edu	37	10	104557834	104557834	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:104557834T>C	uc001kwe.3	+	2	372	c.112T>C	c.(112-114)TAC>CAC	p.Y38H	C10orf26_uc001kwf.3_Missense_Mutation_p.Y59H|C10orf26_uc009xxg.1_RNA	NM_017787	NP_060257	Q9NX94	OPA1L_HUMAN	hypothetical protein LOC54838 isoform 2	38						integral to membrane				central_nervous_system(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;6.14e-09)|all cancers(201;1.66e-07)|BRCA - Breast invasive adenocarcinoma(275;0.224)		GTGCTGCAACTACTACTATGA	0.473												
AS3MT	57412	broad.mit.edu	37	10	104638614	104638614	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:104638614C>T	uc001kwk.2	+	9	891	c.751C>T	c.(751-753)CGT>TGT	p.R251C	AS3MT_uc001kwj.2_Missense_Mutation_p.R253C|AS3MT_uc009xxh.2_Missense_Mutation_p.R251C	NM_020682	NP_065733	Q9HBK9	AS3MT_HUMAN	arsenic (+3 oxidation state) methyltransferase	251					arsonoacetate metabolic process|toxin metabolic process	cytosol	arsenite methyltransferase activity|methylarsonite methyltransferase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;5.87e-09)|all cancers(201;1.58e-07)|BRCA - Breast invasive adenocarcinoma(275;0.223)		AGGTGACTGTCGTTTTGTTTC	0.413												
USMG5	84833	broad.mit.edu	37	10	105151956	105151956	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:105151956T>C	uc001kww.1	-	4	435	c.172A>G	c.(172-174)ACA>GCA	p.T58A	USMG5_uc001kwx.1_RNA	NM_032747	NP_116136	Q96IX5	USMG5_HUMAN	upregulated during skeletal muscle growth 5	58						integral to membrane					0		Colorectal(252;0.142)		Epithelial(162;3.94e-09)|all cancers(201;2.76e-08)|BRCA - Breast invasive adenocarcinoma(275;0.197)		ACCATTTATGTTGCTTTCACA	0.308												
CALHM1	255022	broad.mit.edu	37	10	105217967	105217967	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:105217967C>T	uc001kxe.2	-	1	682	c.542G>A	c.(541-543)CGC>CAC	p.R181H		NM_001001412	NP_001001412	Q8IU99	CAHM1_HUMAN	calcium homeostasis modulator 1	181						endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel activity|identical protein binding			ovary(1)	1						GGAGATGCAGCGGAGGTAACG	0.677												
C10orf79	80217	broad.mit.edu	37	10	105920859	105920859	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:105920859T>C	uc001kxw.2	-	27	3592	c.3476A>G	c.(3475-3477)AAA>AGA	p.K1159R	C10orf79_uc009xxq.2_Missense_Mutation_p.K467R	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1159	Potential.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TTTGAATTGTTTTCTTTCTTC	0.328												
SHOC2	8036	broad.mit.edu	37	10	112769489	112769489	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:112769489A>G	uc001kzl.3	+	8	1790	c.1441A>G	c.(1441-1443)AAC>GAC	p.N481D	SHOC2_uc009xxx.2_Missense_Mutation_p.N481D|SHOC2_uc010qrg.1_Missense_Mutation_p.N120D|SHOC2_uc001kzn.2_Missense_Mutation_p.N435D	NM_007373	NP_031399	Q9UQ13	SHOC2_HUMAN	soc-2 suppressor of clear homolog	481	LRR 17.				fibroblast growth factor receptor signaling pathway|positive regulation of Ras protein signal transduction|Ras protein signal transduction	nucleus|protein phosphatase type 1 complex	protein phosphatase binding|protein phosphatase regulator activity			ovary(1)|skin(1)	2				Epithelial(162;0.000796)|all cancers(201;0.011)|BRCA - Breast invasive adenocarcinoma(275;0.126)		CTTGACAAACAACCAGTTGAC	0.343												
GPAM	57678	broad.mit.edu	37	10	113935430	113935430	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:113935430A>G	uc009xxy.1	-	6	539	c.341T>C	c.(340-342)TTT>TCT	p.F114S	GPAM_uc001kzp.2_Missense_Mutation_p.F114S|GPAM_uc001kzq.1_Missense_Mutation_p.F114S	NM_020918	NP_065969	Q9HCL2	GPAT1_HUMAN	mitochondrial glycerol 3-phosphate	114					phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity			ovary(1)|skin(1)	2				Epithelial(162;0.0306)|all cancers(201;0.123)		CTCTTGAATAAAAAGAACGTA	0.448												
GPAM	57678	broad.mit.edu	37	10	113937763	113937763	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:113937763T>C	uc009xxy.1	-	5	476	c.278A>G	c.(277-279)TAT>TGT	p.Y93C	GPAM_uc001kzp.2_Missense_Mutation_p.Y93C|GPAM_uc001kzq.1_Missense_Mutation_p.Y93C	NM_020918	NP_065969	Q9HCL2	GPAT1_HUMAN	mitochondrial glycerol 3-phosphate	93					phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity			ovary(1)|skin(1)	2				Epithelial(162;0.0306)|all cancers(201;0.123)		TTCATTGATATAAATAACATT	0.289												
TDRD1	56165	broad.mit.edu	37	10	115980582	115980582	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:115980582T>C	uc001lbg.1	+	19	2903	c.2750T>C	c.(2749-2751)GTT>GCT	p.V917A	TDRD1_uc001lbf.2_Missense_Mutation_p.V794A|TDRD1_uc001lbh.1_Missense_Mutation_p.V908A|TDRD1_uc001lbi.1_Missense_Mutation_p.V908A|TDRD1_uc010qsc.1_Missense_Mutation_p.V521A|TDRD1_uc001lbj.2_Missense_Mutation_p.V626A	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	917					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		GAGCTTCAAGTTCATGTACAG	0.299												
VWA2	340706	broad.mit.edu	37	10	116046098	116046098	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:116046098T>C	uc001lbl.1	+	11	1719	c.1398T>C	c.(1396-1398)CGT>CGC	p.R466R	VWA2_uc001lbk.1_Silent_p.R466R|VWA2_uc009xyf.1_Silent_p.R162R	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	466	VWFA 2.					extracellular region		p.R466H(1)		ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		GCCCAGCGCGTCACGCAAGGG	0.647												
FAM160B1	57700	broad.mit.edu	37	10	116602927	116602927	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:116602927T>C	uc001lcb.2	+	6	1093	c.758T>C	c.(757-759)GTT>GCT	p.V253A	FAM160B1_uc001lcc.2_Missense_Mutation_p.V253A	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	253										lung(1)	1						GCCTCGGTTGTTTGTCCAAAT	0.423												
FAM160B1	57700	broad.mit.edu	37	10	116603563	116603563	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:116603563G>A	uc001lcb.2	+	7	1215	c.880G>A	c.(880-882)GCG>ACG	p.A294T	FAM160B1_uc001lcc.2_Missense_Mutation_p.A294T	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	294										lung(1)	1						GCCAGAGCCTGCGGCTGCAAA	0.473												
TRUB1	142940	broad.mit.edu	37	10	116731926	116731926	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:116731926T>C	uc001lcd.2	+	6	690	c.629T>C	c.(628-630)CTT>CCT	p.L210P	TRUB1_uc010qsl.1_Missense_Mutation_p.L112P	NM_139169	NP_631908	Q8WWH5	TRUB1_HUMAN	TruB pseudouridine (psi) synthase homolog 1	210					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding				0		Colorectal(252;0.09)|Breast(234;0.174)|Lung NSC(174;0.245)		Epithelial(162;0.00879)|all cancers(201;0.0243)		GGACAAAGACTTTCGACTTTG	0.418												
ATRNL1	26033	broad.mit.edu	37	10	116930924	116930924	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:116930924C>T	uc001lcg.2	+	8	1608	c.1222C>T	c.(1222-1224)CAG>TAG	p.Q408*	ATRNL1_uc001lce.2_RNA|ATRNL1_uc001lcf.2_Nonsense_Mutation_p.Q408*|ATRNL1_uc009xyq.2_Silent_p.S378S	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	408	Kelch 2.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		ACATGGTCAGCAGTATGCTGT	0.363												
GFRA1	2674	broad.mit.edu	37	10	117884972	117884972	+	Missense_Mutation	SNP	G	G	T	rs77730201		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:117884972G>T	uc001lcj.2	-	6	1228	c.530C>A	c.(529-531)CCG>CAG	p.P177Q	GFRA1_uc001lci.2_Missense_Mutation_p.P172Q|GFRA1_uc009xyr.2_Missense_Mutation_p.P172Q	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	177	2.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		GGTGGTGCACGGGGTGATGTA	0.592												
HSPA12A	259217	broad.mit.edu	37	10	118439100	118439100	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:118439100C>T	uc001lct.2	-	10	1305	c.1200G>A	c.(1198-1200)CCG>CCA	p.P400P	HSPA12A_uc001lcu.2_Silent_p.P317P	NM_025015	NP_079291	O43301	HS12A_HUMAN	heat shock 70kDa protein 12A	400							ATP binding			ovary(1)	1				all cancers(201;0.0158)		TGATGTTCAGCGGGTTAGTTC	0.512												
PDZD8	118987	broad.mit.edu	37	10	119043331	119043331	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:119043331T>C	uc001lde.1	-	5	3112	c.2913A>G	c.(2911-2913)ACA>ACG	p.T971T		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	971					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		ACGTGTTGGGTGTGTGTTTTG	0.438												
PDZD8	118987	broad.mit.edu	37	10	119043801	119043801	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:119043801G>A	uc001lde.1	-	5	2642	c.2443C>T	c.(2443-2445)CCC>TCC	p.P815S		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	815					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		ACCAAATGGGGTTCTTTTTCT	0.353												
RAB11FIP2	22841	broad.mit.edu	37	10	119798815	119798815	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:119798815T>C	uc001ldj.1	-	3	1373	c.933A>G	c.(931-933)TTA>TTG	p.L311L	RAB11FIP2_uc009xyz.1_Silent_p.L311L	NM_014904	NP_055719	Q7L804	RFIP2_HUMAN	RAB11 family interacting protein 2	311					protein transport	plasma membrane|recycling endosome membrane	protein homodimerization activity				0		Colorectal(252;0.235)		all cancers(201;0.0238)		ATTTTTGGGGTAATGAAGCAG	0.368												
SFXN4	119559	broad.mit.edu	37	10	120921921	120921921	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:120921921A>G	uc001leb.2	-	3	228	c.183T>C	c.(181-183)AGT>AGC	p.S61S	SFXN4_uc001ldy.2_5'Flank|SFXN4_uc001ldz.2_5'UTR|SFXN4_uc001lea.2_RNA	NM_213649	NP_998814	Q6P4A7	SFXN4_HUMAN	sideroflexin 4	61					iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0261)		AGTTTTCTATACTTTCCTAAA	0.453												
BAG3	9531	broad.mit.edu	37	10	121436385	121436385	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:121436385A>G	uc001lem.2	+	4	1625	c.1319A>G	c.(1318-1320)GAC>GGC	p.D440G	BAG3_uc001lel.2_Missense_Mutation_p.D439G	NM_004281	NP_004272	O95817	BAG3_HUMAN	BCL2-associated athanogene 3	440	BAG.				anti-apoptosis|apoptosis|protein folding	cytosol				ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00187)|BRCA - Breast invasive adenocarcinoma(275;0.148)		CAGGCTGTAGACAACTTTGAA	0.532												
INPP5F	22876	broad.mit.edu	37	10	121586661	121586661	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:121586661T>C	uc001leo.2	+	20	2934	c.2768T>C	c.(2767-2769)GTT>GCT	p.V923A	INPP5F_uc001lep.2_Missense_Mutation_p.V313A	NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F	923							phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		GAGATTACTGTTGCTCATGGG	0.507												
SEC23IP	11196	broad.mit.edu	37	10	121658045	121658045	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:121658045T>C	uc001leu.1	+	2	342	c.270T>C	c.(268-270)AGT>AGC	p.S90S	SEC23IP_uc010qtc.1_Intron	NM_007190	NP_009121	Q9Y6Y8	S23IP_HUMAN	Sec23-interacting protein p125	90	Interaction with SEC23A.				Golgi organization|intracellular protein transport	endoplasmic reticulum|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment	metal ion binding			ovary(3)	3		Lung NSC(174;0.109)|all_lung(145;0.142)|all_neural(114;0.234)		all cancers(201;0.00515)		CAAGCAGCAGTGATCCTTTTG	0.473												
PPAPDC1A	196051	broad.mit.edu	37	10	122348907	122348907	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:122348907C>A	uc001lev.1	+	7	1061	c.709C>A	c.(709-711)CCC>ACC	p.P237T	PPAPDC1A_uc009xzl.1_Missense_Mutation_p.P174T|PPAPDC1A_uc001lew.1_3'UTR|PPAPDC1A_uc001lex.1_Missense_Mutation_p.N86K|PPAPDC1A_uc001ley.1_Missense_Mutation_p.P116T	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	237					phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		TTGCCATAAACCCTACGTTAG	0.552												
TACC2	10579	broad.mit.edu	37	10	123989903	123989903	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:123989903T>C	uc001lfv.2	+	16	8435	c.8075T>C	c.(8074-8076)CTG>CCG	p.L2692P	TACC2_uc001lfw.2_Missense_Mutation_p.L838P|TACC2_uc009xzx.2_Intron|TACC2_uc010qtv.1_Intron|TACC2_uc001lfx.2_Intron|TACC2_uc001lfy.2_Intron|TACC2_uc001lfz.2_Missense_Mutation_p.L770P|TACC2_uc001lga.2_Intron|TACC2_uc009xzy.2_Intron|TACC2_uc001lgb.2_Intron	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2692	Potential.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ATAGAAGCCCTGAAGCTGGCC	0.567												
TACC2	10579	broad.mit.edu	37	10	124013541	124013541	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:124013541C>T	uc001lfv.2	+	23	9177	c.8817C>T	c.(8815-8817)GAC>GAT	p.D2939D	TACC2_uc001lfw.2_Silent_p.D1085D|TACC2_uc009xzx.2_Silent_p.D2817D|TACC2_uc010qtv.1_Silent_p.D2866D|TACC2_uc001lfx.2_Silent_p.D566D|TACC2_uc001lfy.2_Silent_p.D562D|TACC2_uc001lfz.2_Silent_p.D1017D|TACC2_uc001lga.2_Silent_p.D987D|TACC2_uc009xzy.2_Silent_p.D999D|TACC2_uc001lgb.2_Silent_p.D897D	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2939	Potential.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGATTTGTGACGAACTGATTG	0.438												
PSTK	118672	broad.mit.edu	37	10	124742484	124742484	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:124742484A>T	uc001lgy.1	+	2	892	c.452A>T	c.(451-453)GAT>GTT	p.D151V		NM_153336	NP_699167	Q8IV42	PSTK_HUMAN	phosphoseryl-tRNA kinase	151							ATP binding|kinase activity			liver(1)	1		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.0686)|COAD - Colon adenocarcinoma(40;0.0725)		TTGGTTTTGGATGACAATTTT	0.338												
GPR26	2849	broad.mit.edu	37	10	125426428	125426428	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:125426428T>C	uc001lhh.2	+	1	558	c.505T>C	c.(505-507)TTC>CTC	p.F169L		NM_153442	NP_703143	Q8NDV2	GPR26_HUMAN	G protein-coupled receptor 26	169	Helical; Name=5; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1		Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)				GCGCCTGCGCTTCGCCGTCTT	0.677												
GPR26	2849	broad.mit.edu	37	10	125447563	125447563	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:125447563T>C	uc001lhh.2	+	3	954	c.901T>C	c.(901-903)TAC>CAC	p.Y301H		NM_153442	NP_703143	Q8NDV2	GPR26_HUMAN	G protein-coupled receptor 26	301	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1		Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)				GCGACACCAGTACCGCAAAAG	0.597												
GPR26	2849	broad.mit.edu	37	10	125447602	125447602	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:125447602C>T	uc001lhh.2	+	3	993	c.940C>T	c.(940-942)CAC>TAC	p.H314Y		NM_153442	NP_703143	Q8NDV2	GPR26_HUMAN	G protein-coupled receptor 26	314	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1		Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)				CAGGCTCCTGCACAGACGCTC	0.572												
CPXM2	119587	broad.mit.edu	37	10	125526528	125526528	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:125526528A>G	uc001lhk.1	-	10	1765	c.1440T>C	c.(1438-1440)TAT>TAC	p.Y480Y	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	480					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		GGATTGCAATATAGTGATTGG	0.463												
CPXM2	119587	broad.mit.edu	37	10	125528175	125528175	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:125528175A>G	uc001lhk.1	-	9	1491	c.1166T>C	c.(1165-1167)CTG>CCG	p.L389P	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	389	Poly-Leu.				cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CAGCAGCAGCAGCAGCTCCCG	0.617												
CPXM2	119587	broad.mit.edu	37	10	125601960	125601960	+	Silent	SNP	C	C	T	rs112542031	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:125601960C>T	uc001lhk.1	-	4	883	c.558G>A	c.(556-558)GCG>GCA	p.A186A	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	186	F5/8 type C.				cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CATTTCTTCCCGCGCACCACG	0.468												
C10orf137	26098	broad.mit.edu	37	10	127413917	127413917	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:127413917T>C	uc001liq.1	+	5	834	c.541T>C	c.(541-543)TAT>CAT	p.Y181H	C10orf137_uc001lin.2_Missense_Mutation_p.Y181H|C10orf137_uc001lio.1_Missense_Mutation_p.Y181H|C10orf137_uc001lip.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	181					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				GAAAGAGTTTTATCAAAGACT	0.353												
C10orf90	118611	broad.mit.edu	37	10	128192694	128192694	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:128192694C>T	uc001ljq.2	-	3	1196	c.1075G>A	c.(1075-1077)GCT>ACT	p.A359T	C10orf90_uc001ljp.2_Missense_Mutation_p.A312T|C10orf90_uc010qum.1_Missense_Mutation_p.A456T|C10orf90_uc009yao.2_Missense_Mutation_p.A456T|C10orf90_uc001ljs.1_Missense_Mutation_p.A312T	NM_001004298	NP_001004298	Q96M02	CJ090_HUMAN	hypothetical protein LOC118611	359										ovary(1)|skin(1)	2		all_epithelial(44;4.51e-05)|all_lung(145;0.0068)|Lung NSC(174;0.0105)|Colorectal(57;0.0848)|all_neural(114;0.0936)|Breast(234;0.203)		COAD - Colon adenocarcinoma(40;0.0442)|Colorectal(40;0.0479)		CAAGGACAAGCGCCGGTCCCC	0.512											OREG0020616	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
DOCK1	1793	broad.mit.edu	37	10	128821470	128821470	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:128821470T>C	uc001ljt.2	+	14	1335	c.1271T>C	c.(1270-1272)GTT>GCT	p.V424A	DOCK1_uc010qun.1_Missense_Mutation_p.V445A	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	424	DHR-1.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		TCAGGTGATGTTCGAAATGAT	0.368												
FAM196A	642938	broad.mit.edu	37	10	128974139	128974139	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:128974139A>G	uc001lju.1	-	1	562	c.521T>C	c.(520-522)GTT>GCT	p.V174A	DOCK1_uc001ljt.2_Intron|DOCK1_uc010qun.1_Intron|FAM196A_uc010quo.1_Missense_Mutation_p.V174A|FAM196A_uc001ljv.1_Missense_Mutation_p.V174A|FAM196A_uc009yap.1_Missense_Mutation_p.V174A	NM_001039762	NP_001034851	Q6ZSG2	F196A_HUMAN	hypothetical protein LOC642938	174										ovary(2)	2						GGAATGGAAAACCAAGGCTGT	0.572												
PTPRE	5791	broad.mit.edu	37	10	129871635	129871635	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:129871635A>G	uc001lkb.2	+	17	1778	c.1499A>G	c.(1498-1500)CAG>CGG	p.Q500R	PTPRE_uc009yat.2_Missense_Mutation_p.Q511R|PTPRE_uc009yau.2_Missense_Mutation_p.Q500R|PTPRE_uc001lkd.2_Missense_Mutation_p.Q442R|PTPRE_uc010quq.1_Missense_Mutation_p.Q401R	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	500	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				ATCGCCACCCAGGGGCCACTG	0.552												
MKI67	4288	broad.mit.edu	37	10	129906399	129906399	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:129906399A>G	uc001lke.2	-	13	3900	c.3705T>C	c.(3703-3705)GGT>GGC	p.G1235G	MKI67_uc001lkf.2_Silent_p.G875G|MKI67_uc009yav.1_Silent_p.G810G|MKI67_uc009yaw.1_Silent_p.G385G	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1235	16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				CCTCGGTGTGACCAGGAGTCT	0.512												
PWWP2B	170394	broad.mit.edu	37	10	134218153	134218153	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:134218153C>T	uc001lll.3	+	2	178	c.149C>T	c.(148-150)CCG>CTG	p.P50L	PWWP2B_uc009ybe.2_Missense_Mutation_p.P50L	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	50											0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		GGCCTACCCCCGTTGGCTCCG	0.657												
GPR123	84435	broad.mit.edu	37	10	134886463	134886463	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:134886463C>T	uc001llw.2	+	3	497	c.497C>T	c.(496-498)GCC>GTC	p.A166V				Q86SQ6	GP123_HUMAN	RecName: Full=Probable G-protein coupled receptor 123;	Error:Variant_position_missing_in_Q86SQ6_after_alignment						integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		TTACCAGAGGCCGCCGACTCG	0.562												
TUBGCP2	10844	broad.mit.edu	37	10	135099060	135099060	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:135099060C>T	uc001lmg.1	-	12	2152	c.1795G>A	c.(1795-1797)GCG>ACG	p.A599T	TUBGCP2_uc001lmf.1_Missense_Mutation_p.A192T|TUBGCP2_uc010qvc.1_Missense_Mutation_p.A627T|TUBGCP2_uc009ybk.1_Intron|TUBGCP2_uc010qvd.1_Missense_Mutation_p.A469T|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	599					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		TGCGCCATCGCCTTCTCCTGC	0.587												
CYP2E1	1571	broad.mit.edu	37	10	135346227	135346227	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:135346227A>G	uc001lnj.1	+	5	713	c.680A>G	c.(679-681)TAC>TGC	p.Y227C	CYP2E1_uc001lnk.1_Missense_Mutation_p.Y90C|CYP2E1_uc009ybl.1_Missense_Mutation_p.Y28C|CYP2E1_uc009ybm.1_5'UTR|CYP2E1_uc001lnl.1_Missense_Mutation_p.Y28C	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	227					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	TTTCTACACTACTTGCCTGGA	0.388									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of			
NLRP6	171389	broad.mit.edu	37	11	281524	281524	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:281524C>G	uc010qvs.1	+	4	1790	c.1790C>G	c.(1789-1791)GCC>GGC	p.A597G	NLRP6_uc010qvt.1_Missense_Mutation_p.A597G	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	597						cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		ACCGAGGGGGCCAAAGGGCTC	0.652												
RNH1	6050	broad.mit.edu	37	11	498027	498027	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:498027G>A	uc001lpk.1	-	7	2479	c.1071C>T	c.(1069-1071)GGC>GGT	p.G357G	RNH1_uc001lpl.1_Silent_p.G357G|RNH1_uc001lpm.1_Silent_p.G357G|RNH1_uc001lpn.1_Silent_p.G357G|RNH1_uc001lpo.1_Silent_p.G357G|RNH1_uc009ybw.1_RNA|RNH1_uc001lpp.1_Silent_p.G357G|RNH1_uc001lpt.1_Silent_p.G114G|RNH1_uc001lpq.1_Silent_p.G357G|RNH1_uc001lpr.1_Silent_p.G357G|RNH1_uc001lps.1_Silent_p.G357G	NM_203389	NP_976323	P13489	RINI_HUMAN	ribonuclease/angiogenin inhibitor	357	LRR 12.				mRNA catabolic process|regulation of angiogenesis	angiogenin-PRI complex|cytoplasm	protein binding|ribonuclease inhibitor activity				0		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.26e-26)|Epithelial(43;1.34e-25)|OV - Ovarian serous cystadenocarcinoma(40;5.31e-20)|BRCA - Breast invasive adenocarcinoma(625;8.01e-05)|Lung(200;0.0378)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCTCCCGCACGCCCGCATCCT	0.607												
RASSF7	8045	broad.mit.edu	37	11	563560	563560	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:563560G>A	uc001lqc.2	+	6	1072	c.1037G>A	c.(1036-1038)GGC>GAC	p.G346D	C11orf35_uc001lpx.2_5'Flank|RASSF7_uc001lqa.2_3'UTR|RASSF7_uc001lqb.2_3'UTR|RASSF7_uc001lqd.2_Nonsense_Mutation_p.W318*	NM_003475	NP_003466	Q02833	RASF7_HUMAN	Ras association (RalGDS/AF-6) domain family	346					regulation of transcription, DNA-dependent|signal transduction	nucleus	DNA binding|protein binding			skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TCCCGCAGTGGCCCCCATGAC	0.692												
RASSF7	8045	broad.mit.edu	37	11	563570	563570	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:563570C>T	uc001lqc.2	+	6	1082	c.1047C>T	c.(1045-1047)GAC>GAT	p.D349D	C11orf35_uc001lpx.2_5'Flank|RASSF7_uc001lqa.2_3'UTR|RASSF7_uc001lqb.2_3'UTR|RASSF7_uc001lqd.2_3'UTR	NM_003475	NP_003466	Q02833	RASF7_HUMAN	Ras association (RalGDS/AF-6) domain family	349					regulation of transcription, DNA-dependent|signal transduction	nucleus	DNA binding|protein binding			skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCCCCCATGACGCAGAACTCC	0.682												
PHRF1	57661	broad.mit.edu	37	11	605153	605153	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:605153C>T	uc001lqe.2	+	11	1318	c.1187C>T	c.(1186-1188)ACG>ATG	p.T396M	PHRF1_uc010qwc.1_Missense_Mutation_p.T396M|PHRF1_uc010qwd.1_Missense_Mutation_p.T395M|PHRF1_uc010qwe.1_Missense_Mutation_p.T392M|PHRF1_uc009ybz.1_Missense_Mutation_p.T187M|PHRF1_uc009yca.1_5'Flank	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	396	Arg-rich.						RNA polymerase binding|zinc ion binding				0						ATCGCGCGGACGCTGGGCCTG	0.572												
DEAF1	10522	broad.mit.edu	37	11	679734	679734	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:679734G>A	uc001lqq.1	-	8	1773	c.1080C>T	c.(1078-1080)GTC>GTT	p.V360V	DEAF1_uc009ycf.1_RNA	NM_021008	NP_066288	O75398	DEAF1_HUMAN	deformed epidermal autoregulatory factor 1	360					embryonic skeletal system development|germ cell development|neural tube closure|regulation of mammary gland epithelial cell proliferation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|cytoplasm|extracellular region|nucleus	protein binding|zinc ion binding				0		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;1.76e-27)|Epithelial(43;8.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.55e-21)|BRCA - Breast invasive adenocarcinoma(625;4.83e-05)|Lung(200;0.0259)|LUSC - Lung squamous cell carcinoma(625;0.075)		TCTCTGATATGACAGCAGTGG	0.632												
CD151	977	broad.mit.edu	37	11	837482	837482	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:837482A>G	uc001lry.2	+	7	623	c.479A>G	c.(478-480)AAC>AGC	p.N160S	CD151_uc001lrx.2_RNA|CD151_uc001lrz.2_Missense_Mutation_p.N160S|CD151_uc001lsa.2_Missense_Mutation_p.N160S|CD151_uc001lsb.2_Missense_Mutation_p.N160S	NM_004357	NP_004348	P48509	CD151_HUMAN	CD151 antigen	160	Extracellular (Potential).				cell adhesion|hemidesmosome assembly	cytosol|integral to plasma membrane|membrane fraction	protein binding				0		all_cancers(49;2.31e-08)|all_epithelial(84;3.72e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.179)|all_lung(207;0.227)		all cancers(45;1.54e-25)|Epithelial(43;1.22e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.91e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGCAGCAACAACTCACAGGAC	0.627												
MUC6	4588	broad.mit.edu	37	11	1025234	1025234	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:1025234A>C	uc001lsw.2	-	23	2984	c.2933T>G	c.(2932-2934)CTC>CGC	p.L978R		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	978	VWFD 3.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GTTCCAGATGAGCGTCAGGTT	0.667												
MUC2	4583	broad.mit.edu	37	11	1081139	1081139	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:1081139A>G	uc001lsx.1	+	11	1462	c.1435A>G	c.(1435-1437)ACC>GCC	p.T479A		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	479	VWFD 2.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GCCCCACGTGACCGGTGAGTT	0.652												
MUC5B	727897	broad.mit.edu	37	11	1258211	1258211	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:1258211C>A	uc009ycr.1	+	41	5319	c.5193C>A	c.(5191-5193)GCC>GCA	p.A1731A	MUC5B_uc009yct.1_Silent_p.A1038A|MUC5B_uc001ltb.2_Silent_p.A1041A|MUC5B_uc001lta.2_Silent_p.A706A	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1038	VWFD 3.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ATGACTTTGCCACGCGTAGCC	0.667												
DUSP8	1850	broad.mit.edu	37	11	1579347	1579347	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:1579347A>G	uc001lts.2	-	5	820	c.692T>C	c.(691-693)TTC>TCC	p.F231S		NM_004420	NP_004411	Q13202	DUS8_HUMAN	dual specificity phosphatase 8	231	Tyrosine-protein phosphatase.				inactivation of MAPK activity	cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		all_epithelial(84;0.000134)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000621)|Lung(200;0.0687)|LUSC - Lung squamous cell carcinoma(625;0.0825)		CTCACCGATGAACTCGATGGA	0.602												
KRTAP5-5	439915	broad.mit.edu	37	11	1651339	1651339	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:1651339G>C	uc001lty.2	+	1	307	c.269G>C	c.(268-270)GGC>GCC	p.G90A		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	90	8 X 4 AA repeats of C-C-X-P.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GGGGGCTGTGGCTCTTGCGGG	0.602												
CTSD	1509	broad.mit.edu	37	11	1775320	1775320	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:1775320G>T	uc001luc.1	-	7	1009	c.876C>A	c.(874-876)GCC>GCA	p.A292A	CTSD_uc009yda.1_RNA	NM_001909	NP_001900	P07339	CATD_HUMAN	cathepsin D preproprotein	292					cell death|proteolysis	extracellular space|lysosome|melanosome	aspartic-type endopeptidase activity				0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TGTCCACAATGGCCTCACAGC	0.687												
OSBPL5	114879	broad.mit.edu	37	11	3141762	3141762	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:3141762C>A	uc001lxk.2	-	6	653	c.495G>T	c.(493-495)TGG>TGT	p.W165C	OSBPL5_uc010qxq.1_Intron|OSBPL5_uc009ydw.2_Intron|OSBPL5_uc001lxl.2_Intron|OSBPL5_uc009ydx.2_Missense_Mutation_p.W189C	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	165	PH.				cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		CCGTGCCCACCCACTGGCCCA	0.642												
NUP98	4928	broad.mit.edu	37	11	3744545	3744545	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:3744545T>C	uc001lyh.2	-	16	2279	c.1988A>G	c.(1987-1989)AAC>AGC	p.N663S	NUP98_uc001lyi.2_Missense_Mutation_p.N663S|NUP98_uc001lyj.1_Missense_Mutation_p.N663S|NUP98_uc001lyk.1_Missense_Mutation_p.N680S	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	680					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		ACTGTTGCTGTTGCTGTGTTT	0.423			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML							
RRM1	6240	broad.mit.edu	37	11	4150330	4150330	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:4150330T>C	uc001lyw.3	+	15	2038	c.1719T>C	c.(1717-1719)GTT>GTC	p.V573V	RRM1_uc009yej.2_RNA|RRM1_uc009yei.2_Silent_p.V533V|RRM1_uc010qyc.1_Silent_p.V476V|RRM1_uc010qyd.1_Silent_p.V235V	NM_001033	NP_001024	P23921	RIR1_HUMAN	ribonucleoside-diphosphate reductase M1 chain	573					deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion	cytosol|nucleoplasm|ribonucleoside-diphosphate reductase complex	ATP binding|ribonucleoside-diphosphate reductase activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00502)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0848)|LUSC - Lung squamous cell carcinoma(625;0.205)	Clofarabine(DB00631)|Fludarabine(DB01073)|Gemcitabine(DB00441)|Hydroxyurea(DB01005)	TGTGGAATGTTACTCCTACAG	0.259												
RRM1	6240	broad.mit.edu	37	11	4159522	4159522	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:4159522T>C	uc001lyw.3	+	19	2607	c.2288T>C	c.(2287-2289)GTA>GCA	p.V763A	RRM1_uc009yej.2_RNA|RRM1_uc009yei.2_Missense_Mutation_p.V723A|RRM1_uc010qyc.1_Missense_Mutation_p.V666A|RRM1_uc010qyd.1_Missense_Mutation_p.V425A	NM_001033	NP_001024	P23921	RIR1_HUMAN	ribonucleoside-diphosphate reductase M1 chain	763					deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion	cytosol|nucleoplasm|ribonucleoside-diphosphate reductase complex	ATP binding|ribonucleoside-diphosphate reductase activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00502)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0848)|LUSC - Lung squamous cell carcinoma(625;0.205)	Clofarabine(DB00631)|Fludarabine(DB01073)|Gemcitabine(DB00441)|Hydroxyurea(DB01005)	AAAGAAAAGGTATCAAAAGAG	0.413												
OR52K2	119774	broad.mit.edu	37	11	4471390	4471390	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:4471390T>C	uc001lyz.1	+	1	821	c.821T>C	c.(820-822)GTC>GCC	p.V274A		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	274	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCCCCTCATGTCCACATCCTC	0.502												
OR52K1	390036	broad.mit.edu	37	11	4510299	4510299	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:4510299C>A	uc001lza.1	+	1	169	c.169C>A	c.(169-171)CTC>ATC	p.L57I		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		TGATGCAGCCCTCCATGAACC	0.498												
OR51E2	81285	broad.mit.edu	37	11	4702990	4702990	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:4702990C>A	uc001lzk.2	-	2	1196	c.952G>T	c.(952-954)GGA>TGA	p.G318*		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	318	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		CACTTGCCTCCCACAGCCTGC	0.428												
OR51F1	256892	broad.mit.edu	37	11	4790303	4790303	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:4790303T>C	uc010qyl.1	-	1	845	c.845A>G	c.(844-846)TAC>TGC	p.Y282C		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	282						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		TAAAAGCAGGTATACATTAGC	0.478												
OR51T1	401665	broad.mit.edu	37	11	4903765	4903765	+	Silent	SNP	C	C	T	rs138268565		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:4903765C>T	uc010qyp.1	+	1	717	c.717C>T	c.(715-717)GAC>GAT	p.D239D		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATGGCACTGACGTATTGTTTA	0.443												
OR51G1	79324	broad.mit.edu	37	11	4945549	4945549	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:4945549G>A	uc010qyr.1	-	1	21	c.21C>T	c.(19-21)AGC>AGT	p.S7S		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTTGGAGGCTGCTATTAAGAA	0.443												
OR51A4	401666	broad.mit.edu	37	11	4967443	4967443	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:4967443T>C	uc010qys.1	-	1	888	c.888A>G	c.(886-888)AAA>AAG	p.K296K		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCTGTTTAGTTTTTACACAAT	0.393												
OR51A4	401666	broad.mit.edu	37	11	4967610	4967610	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:4967610T>C	uc010qys.1	-	1	721	c.721A>G	c.(721-723)ACT>GCT	p.T241A		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAAACACAAGTATTGAGAGCC	0.473												
OR51A4	401666	broad.mit.edu	37	11	4967644	4967644	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:4967644A>G	uc010qys.1	-	1	687	c.687T>C	c.(685-687)ATT>ATC	p.I229I		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTTTGGATGCAATTCCCAGTA	0.443												
HBD	3045	broad.mit.edu	37	11	5255572	5255572	+	Missense_Mutation	SNP	C	C	T	rs35654785		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:5255572C>T	uc001maf.1	-	1	287	c.92G>A	c.(91-93)AGA>AAA	p.R31K		NM_000519	NP_000510	P02042	HBD_HUMAN	delta globin	31					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;5.69e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGATACCAACCTGCCCAGGGC	0.517												
OR51B6	390058	broad.mit.edu	37	11	5373179	5373179	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:5373179A>G	uc010qzb.1	+	1	442	c.442A>G	c.(442-444)ACA>GCA	p.T148A	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCGGGTATTGACAAGGGCTGG	0.478												
OR51M1	390059	broad.mit.edu	37	11	5411261	5411261	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:5411261A>G	uc010qzc.1	+	1	633	c.633A>G	c.(631-633)GGA>GGG	p.G211G	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	211						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATCTGTATGGACTGATGGTGG	0.522												
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5625792	5625792	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:5625792T>G	uc001mbf.2	+	3	780	c.536T>G	c.(535-537)CTG>CGG	p.L179R	HBG2_uc001mak.1_Intron|TRIM6_uc009yeo.1_Missense_Mutation_p.L125R|TRIM6_uc010qzj.1_5'UTR|TRIM6_uc001mbc.1_Missense_Mutation_p.L151R|TRIM6_uc001mbe.2_5'UTR|TRIM6_uc010qzk.1_5'UTR|TRIM6_uc010qzl.1_Intron|TRIM6_uc001mbd.2_Missense_Mutation_p.L179R|TRIM6_uc001mbg.1_5'Flank|TRIM6_uc009yep.1_5'Flank	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	179						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		CTAAAGAAGCTGAAGAACGAG	0.443												
OR56B1	387748	broad.mit.edu	37	11	5758600	5758600	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:5758600A>C	uc001mbt.1	+	1	854	c.854A>C	c.(853-855)AAT>ACT	p.N285T	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		GTTCTACTTAATGTGTTGCAC	0.433												
OR52N5	390075	broad.mit.edu	37	11	5799138	5799138	+	Missense_Mutation	SNP	G	G	A	rs117500523	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:5799138G>A	uc010qzn.1	-	1	727	c.727C>T	c.(727-729)CGG>TGG	p.R243W	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	243	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		GCCTTCTGCCGAGCATCTGAT	0.463												
OR52N1	79473	broad.mit.edu	37	11	5810021	5810021	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:5810021A>G	uc010qzo.1	-	1	26	c.26T>C	c.(25-27)CTA>CCA	p.L9P	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001913	NP_001001913	Q8NH53	O52N1_HUMAN	olfactory receptor, family 52, subfamily N,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		AGCTGGAGTTAGGCTGGTGCC	0.398												
C11orf42	160298	broad.mit.edu	37	11	6232207	6232207	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:6232207G>A	uc001mcj.2	+	3	985	c.937G>A	c.(937-939)GAC>AAC	p.D313N		NM_173525	NP_775796	Q8N5U0	CK042_HUMAN	hypothetical protein LOC160298	313										ovary(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.95e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGGGACCCCGACGGGCACTC	0.632												
FAM160A2	84067	broad.mit.edu	37	11	6244318	6244318	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:6244318C>T	uc001mcl.3	-	4	1287	c.928G>A	c.(928-930)GTA>ATA	p.V310I	FAM160A2_uc001mck.3_Missense_Mutation_p.V310I|FAM160A2_uc001mcm.2_Missense_Mutation_p.V310I	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	310					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						ACCTGAATTACTGCATTGCAG	0.507												
CNGA4	1262	broad.mit.edu	37	11	6261527	6261527	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:6261527G>A	uc001mco.2	+	4	610	c.503G>A	c.(502-504)CGC>CAC	p.R168H	CNGA4_uc010raa.1_Intron|CNGA4_uc001mcn.2_Missense_Mutation_p.R128H	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	168	Extracellular (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AATGCCTTTCGCATTGCCAAG	0.582												
CCKBR	887	broad.mit.edu	37	11	6292348	6292348	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:6292348A>G	uc001mcp.2	+	5	1112	c.919A>G	c.(919-921)ACG>GCG	p.T307A	CCKBR_uc001mcq.2_Missense_Mutation_p.T235A|CCKBR_uc001mcr.2_Missense_Mutation_p.T307A|CCKBR_uc001mcs.2_Missense_Mutation_p.T376A|CCKBR_uc001mct.1_RNA	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	307	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	CCTGGAGCTGACGGCGCTGAC	0.667												
DNHD1	144132	broad.mit.edu	37	11	6540902	6540902	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:6540902G>T	uc001mdw.3	+	8	2029	c.1465G>T	c.(1465-1467)GGC>TGC	p.G489C	DNHD1_uc001mdp.2_Missense_Mutation_p.G489C|DNHD1_uc001mdq.2_Missense_Mutation_p.G178C	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	489					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		GATCAGGACAGGCCAAGGCTC	0.537												
DNHD1	144132	broad.mit.edu	37	11	6592035	6592035	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:6592035C>T	uc001mdw.3	+	42	13857	c.13293C>T	c.(13291-13293)GGC>GGT	p.G4431G	DNHD1_uc001mea.3_Silent_p.G700G|DNHD1_uc001meb.2_3'UTR|DNHD1_uc001mec.2_Silent_p.G699G|DNHD1_uc010rao.1_Silent_p.G689G|DNHD1_uc009yfg.2_Silent_p.G56G	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	4431	Potential.				microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CTCGAAGAGGCGCCCAGCTTG	0.637												
DCHS1	8642	broad.mit.edu	37	11	6662222	6662222	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:6662222A>G	uc001mem.1	-	2	1033	c.623T>C	c.(622-624)GTA>GCA	p.V208A		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	208	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCCAGTAACTACCAGCTCAGG	0.622												
OR2AG2	338755	broad.mit.edu	37	11	6789715	6789715	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:6789715T>C	uc001meq.1	-	1	474	c.474A>G	c.(472-474)GGA>GGG	p.G158G		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ACATGGTATGTCCTATAGCAA	0.507												
OR2D3	120775	broad.mit.edu	37	11	6942479	6942479	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:6942479T>C	uc010rav.1	+	1	247	c.247T>C	c.(247-249)TCC>CCC	p.S83P		NM_001004684	NP_001004684	Q8NGH3	OR2D3_HUMAN	olfactory receptor, family 2, subfamily D,	83	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TAGAAATCTCTCCTTTGCAGA	0.408												
NLRP14	338323	broad.mit.edu	37	11	7059912	7059912	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:7059912T>C	uc001mfb.1	+	2	418	c.95T>C	c.(94-96)TTA>TCA	p.L32S		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	32	DAPIN.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		ACATTCAAGTTATTCCTAAAG	0.428												
TUB	7275	broad.mit.edu	37	11	8117104	8117104	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:8117104A>T	uc001mga.2	+	5	606	c.457A>T	c.(457-459)ATT>TTT	p.I153F	TUB_uc010rbk.1_Missense_Mutation_p.I159F|TUB_uc001mfy.2_Missense_Mutation_p.I208F	NM_177972	NP_813977	P50607	TUB_HUMAN	tubby isoform b	153					phagocytosis|positive regulation of phagocytosis|response to stimulus	cytoplasm|extracellular region|nucleus|plasma membrane				ovary(1)	1		all_lung(207;6.91e-20)|Lung NSC(207;3.36e-17)		Epithelial(150;1.69e-62)|BRCA - Breast invasive adenocarcinoma(625;8.54e-06)|LUSC - Lung squamous cell carcinoma(625;0.000184)		CCCAGTGCAGATTCTGACTGT	0.667												
RIC3	79608	broad.mit.edu	37	11	8132264	8132264	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:8132264T>C	uc001mgd.2	-	6	1145	c.1091A>G	c.(1090-1092)AAC>AGC	p.N364S	RIC3_uc001mgb.2_Missense_Mutation_p.N202S|RIC3_uc001mgc.2_Missense_Mutation_p.N363S|RIC3_uc001mge.2_Missense_Mutation_p.N182S|RIC3_uc010rbl.1_Missense_Mutation_p.N314S|RIC3_uc010rbm.1_Missense_Mutation_p.N392S|RIC3_uc009yfm.2_Missense_Mutation_p.N283S|RIC3_uc009yfn.2_Missense_Mutation_p.N167S	NM_024557	NP_078833	Q7Z5B4	RIC3_HUMAN	resistance to inhibitors of cholinesterase 3	364	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				large_intestine(1)|ovary(1)|pancreas(1)	3				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		ACCCTGGGGGTTACGCTTCCT	0.498												
SBF2	81846	broad.mit.edu	37	11	9803113	9803113	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:9803113T>C	uc001mib.2	-	39	5530	c.5392A>G	c.(5392-5394)ATC>GTC	p.I1798V	uc001mhz.1_Intron|SBF2_uc001mid.2_Missense_Mutation_p.I442V|SBF2_uc001mic.2_Missense_Mutation_p.I88V|uc001mie.3_Intron	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	1798	PH.				myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		CCAGCAGGGATGACCATTTCT	0.483												
SBF2	81846	broad.mit.edu	37	11	9853940	9853940	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:9853940T>C	uc001mib.2	-	27	3621	c.3483A>G	c.(3481-3483)CAA>CAG	p.Q1161Q		NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	1161	Myotubularin phosphatase.				myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		CCTGTACAGCTTGAGGTACGA	0.333												
USP47	55031	broad.mit.edu	37	11	11927031	11927031	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:11927031A>G	uc001mjq.1	+	9	1728	c.965A>G	c.(964-966)GAC>GGC	p.D322G	USP47_uc001mjr.2_Missense_Mutation_p.D234G|USP47_uc001mjs.2_Missense_Mutation_p.D302G	NM_017944	NP_060414	Q96K76	UBP47_HUMAN	ubiquitin specific protease 47	322					base-excision repair|cellular response to UV|monoubiquitinated protein deubiquitination|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of G2/M transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of cell growth|response to drug|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|WD40-repeat domain binding			ovary(1)|skin(1)	2				Epithelial(150;0.000339)		TGGCGAATCGACACATATCTT	0.423												
PARVA	55742	broad.mit.edu	37	11	12530142	12530142	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:12530142A>G	uc001mki.2	+	7	718	c.669A>G	c.(667-669)GGA>GGG	p.G223G	PARVA_uc010rck.1_Silent_p.G170G	NM_018222	NP_060692	Q9NVD7	PARVA_HUMAN	parvin, alpha	223					cell adhesion|cell junction assembly|cilium morphogenesis	actin cytoskeleton|cytosol|focal adhesion	actin binding			breast(3)	3				Epithelial(150;0.00624)		AACGAGAAGGAATCCTCCAGT	0.428												
RRAS2	22800	broad.mit.edu	37	11	14316397	14316397	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:14316397C>T	uc001mlf.3	-	3	521	c.208G>A	c.(208-210)GCA>ACA	p.A70T	RRAS2_uc009ygq.2_5'UTR|RRAS2_uc010rco.1_Missense_Mutation_p.A76T	NM_012250	NP_036382	P62070	RRAS2_HUMAN	related RAS viral (r-ras) oncogene homolog 2	70	GTP (By similarity).					endoplasmic reticulum|plasma membrane	GTP binding|GTPase activity|protein binding			breast(1)	1				Epithelial(150;0.203)		TCTTGTCCTGCTGTATCCAAA	0.403												
COPB1	1315	broad.mit.edu	37	11	14486521	14486521	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:14486521G>A	uc001mli.2	-	18	2653	c.2346C>T	c.(2344-2346)TTC>TTT	p.F782F	COPB1_uc001mlg.2_Silent_p.F782F|COPB1_uc001mlh.2_Silent_p.F782F	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	782					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						TAATATTTGCGAAGTCATGAG	0.328												
COPB1	1315	broad.mit.edu	37	11	14515965	14515965	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:14515965T>A	uc001mli.2	-	3	419	c.112A>T	c.(112-114)AAG>TAG	p.K38*	COPB1_uc001mlg.2_Nonsense_Mutation_p.K38*|COPB1_uc001mlh.2_Nonsense_Mutation_p.K38*|PSMA1_uc010rcp.1_RNA	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	38					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						GCTTCAGTCTTTGACTTTACA	0.289												
PDE3B	5140	broad.mit.edu	37	11	14839924	14839924	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:14839924G>A	uc001mln.2	+	6	2071	c.1718G>A	c.(1717-1719)AGC>AAC	p.S573N	PDE3B_uc010rcr.1_Missense_Mutation_p.S522N	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B	573					cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						AATTCTGATAGCAATCTGTGT	0.289												
CYP2R1	120227	broad.mit.edu	37	11	14913534	14913534	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:14913534T>C	uc001mlr.2	-	1	218	c.218A>G	c.(217-219)TAC>TGC	p.Y73C	CYP2R1_uc001mlo.2_5'Flank|CYP2R1_uc001mlp.2_5'Flank|CYP2R1_uc001mlq.2_5'Flank	NM_024514	NP_078790	Q6VVX0	CP2R1_HUMAN	cytochrome P450, family 2, subfamily R,	73					hormone biosynthetic process|vitamin D metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding|vitamin D3 25-hydroxylase activity			ovary(1)|central_nervous_system(1)	2					Cholecalciferol(DB00169)|Ergocalciferol(DB00153)	TACCTCTCCGTACACCTGGCT	0.687												
PIK3C2A	5286	broad.mit.edu	37	11	17156673	17156673	+	Missense_Mutation	SNP	T	T	C	rs143022303		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:17156673T>C	uc001mmq.3	-	9	1948	c.1882A>G	c.(1882-1884)AGG>GGG	p.R628G	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Missense_Mutation_p.R248G|PIK3C2A_uc001mmr.3_Intron|PIK3C2A_uc010rcx.1_Missense_Mutation_p.R628G	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	628					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	GTTGAACTCCTGCTAGTGTCT	0.338												
KCNJ11	3767	broad.mit.edu	37	11	17409176	17409176	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:17409176C>T	uc001mna.2	-	1	1031	c.463G>A	c.(463-465)GTG>ATG	p.V155M	KCNJ11_uc001mnb.3_Missense_Mutation_p.V68M	NM_000525	NP_000516	B4DWI4	B4DWI4_HUMAN	potassium inwardly-rectifying channel J11	155						integral to membrane	ATP-activated inward rectifier potassium channel activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0276)|Colorectal(2;0.0633)		ATGAGCCCCACGATGTTCTGC	0.562											OREG0020810	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
NAV2	89797	broad.mit.edu	37	11	20122663	20122663	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:20122663G>A	uc001mpr.3	+	32	6732	c.6371G>A	c.(6370-6372)CGG>CAG	p.R2124Q	NAV2_uc001mpp.2_Missense_Mutation_p.R2057Q|NAV2_uc009yhx.2_Missense_Mutation_p.R1185Q|NAV2_uc009yhz.2_Missense_Mutation_p.R766Q|NAV2_uc001mpu.2_Missense_Mutation_p.R559Q	NM_182964	NP_892009	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 1	2180						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						CGAGAGGGACGGGAGTTGACA	0.532												
SLC6A5	9152	broad.mit.edu	37	11	20629055	20629055	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:20629055T>C	uc001mqd.2	+	5	1115	c.842T>C	c.(841-843)GTC>GCC	p.V281A	SLC6A5_uc009yic.2_Missense_Mutation_p.V46A	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	281	Helical; Name=3; (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	ATCATCTCTGTCCTAATAGCC	0.443												
MUC15	143662	broad.mit.edu	37	11	26587159	26587159	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:26587159C>T	uc001mqx.2	-	2	513	c.247G>A	c.(247-249)GGA>AGA	p.G83R	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Missense_Mutation_p.G110R|MUC15_uc001mqy.2_Missense_Mutation_p.G110R	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	83	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCTGTTATTCCGTGGCTGTTG	0.428												
FIBIN	387758	broad.mit.edu	37	11	27016599	27016599	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:27016599A>G	uc001mrd.2	+	1	972	c.526A>G	c.(526-528)ACA>GCA	p.T176A		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	176						extracellular region|Golgi apparatus					0						GCTGAAGGAGACACTGGACAT	0.567												
BBOX1	8424	broad.mit.edu	37	11	27141369	27141369	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:27141369A>G	uc001mre.1	+	7	1181	c.813A>G	c.(811-813)GTA>GTG	p.V271V	BBOX1_uc009yih.1_Silent_p.V271V|BBOX1_uc001mrg.1_Silent_p.V271V	NM_003986	NP_003977	O75936	BODG_HUMAN	gamma-butyrobetaine dioxygenase	271					carnitine biosynthetic process	actin cytoskeleton|cytosol|intracellular membrane-bounded organelle	gamma-butyrobetaine dioxygenase activity|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1					Succinic acid(DB00139)|Vitamin C(DB00126)	ATTTTTCTGTACAATCAAAAC	0.303												
KCNA4	3739	broad.mit.edu	37	11	30032677	30032677	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:30032677A>G	uc001msk.2	-	2	2701	c.1549T>C	c.(1549-1551)TGG>CGG	p.W517R		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	517						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ACCACAGCCCACCAAAATGCA	0.517												
DCDC1	341019	broad.mit.edu	37	11	31312290	31312290	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:31312290T>C	uc001msv.2	-	7	1066	c.864A>G	c.(862-864)AAA>AAG	p.K288K	DCDC1_uc001msu.1_Intron	NM_181807	NP_861523	P59894	DCDC1_HUMAN	doublecortin domain containing 1	288					intracellular signal transduction					skin(1)	1	Lung SC(675;0.225)					TCTCAGTAAGTTTCTTCATTC	0.383												
PAX6	5080	broad.mit.edu	37	11	31824298	31824298	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:31824298A>G	uc001mtd.3	-	4	985	c.95T>C	c.(94-96)CTA>CCA	p.L32P	PAX6_uc001mte.3_Missense_Mutation_p.L32P|PAX6_uc001mtg.3_Missense_Mutation_p.L32P|PAX6_uc001mtf.3_Missense_Mutation_p.L32P|PAX6_uc001mth.3_Missense_Mutation_p.L32P|PAX6_uc009yjr.2_Missense_Mutation_p.L32P	NM_001127612	NP_001121084	P26367	PAX6_HUMAN	paired box gene 6 isoform a	32	Paired.				blood vessel development|central nervous system development|cornea development in camera-type eye|glucose homeostasis|iris morphogenesis|negative regulation of neurogenesis|neuron fate commitment|pancreatic A cell development|positive regulation of transcription, DNA-dependent|response to wounding|visual perception	cytoplasm|nuclear chromatin	R-SMAD binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|ubiquitin-protein ligase activity			lung(4)|ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	9	Lung SC(675;0.225)					GCTGTGAGCTAGCTCTACAAT	0.652									Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation			
RCN1	5954	broad.mit.edu	37	11	32118854	32118854	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:32118854A>G	uc010reb.1	+	2	685	c.419A>G	c.(418-420)TAC>TGC	p.Y140C	RCN1_uc010rea.1_Missense_Mutation_p.Y89C|RCN1_uc001mtk.2_Translation_Start_Site	NM_002901	NP_002892	Q15293	RCN1_HUMAN	reticulocalbin 1 precursor	140	EF-hand 2.					endoplasmic reticulum lumen	calcium ion binding			large_intestine(1)	1	Lung SC(675;0.225)					TGGGAAGAATACAAACAAGCC	0.443												
CCDC73	493860	broad.mit.edu	37	11	32635338	32635338	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:32635338A>G	uc001mtv.2	-	16	2570	c.2526T>C	c.(2524-2526)AAT>AAC	p.N842N		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	842										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					TTTTCTCTGTATTATTTAACA	0.348												
FBXO3	26273	broad.mit.edu	37	11	33780074	33780074	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:33780074A>G	uc001muz.2	-	4	460	c.432T>C	c.(430-432)TGT>TGC	p.C144C	FBXO3_uc001muy.2_Silent_p.C31C|FBXO3_uc009ykb.2_RNA|FBXO3_uc001mva.1_Silent_p.C144C|FBXO3_uc001mvb.1_Silent_p.C139C|FBXO3_uc010rek.1_RNA	NM_012175	NP_036307	Q9UK99	FBX3_HUMAN	F-box only protein 3 isoform 1	144					proteolysis	nucleus	ubiquitin-protein ligase activity			pancreas(1)	1		Lung NSC(402;0.0804)		BRCA - Breast invasive adenocarcinoma(625;0.00315)|Lung(977;0.00488)|LUSC - Lung squamous cell carcinoma(625;0.008)		TTCGGTATGAACATCGATAAT	0.393												
EHF	26298	broad.mit.edu	37	11	34680429	34680429	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:34680429T>C	uc001mvr.1	+	9	965	c.854T>C	c.(853-855)GTA>GCA	p.V285A	EHF_uc009yke.1_Missense_Mutation_p.V262A|EHF_uc009ykf.1_Missense_Mutation_p.V288A	NM_012153	NP_036285	Q9NZC4	EHF_HUMAN	ets homologous factor	285	ETS.				cell proliferation|epithelial cell differentiation|multicellular organismal development|positive regulation of transcription, DNA-dependent		protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(20;0.117)	Epithelial(1;0.055)|all cancers(1;0.137)|STAD - Stomach adenocarcinoma(6;0.235)			CGAAGACTGGTATATAAATTT	0.398												
PDHX	8050	broad.mit.edu	37	11	34991757	34991757	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:34991757T>C	uc001mvt.2	+	7	1414	c.888T>C	c.(886-888)AGT>AGC	p.S296S	PDHX_uc010rep.1_Silent_p.S281S|PDHX_uc010req.1_Intron	NM_003477	NP_003468	O00330	ODPX_HUMAN	pyruvate dehydrogenase complex, component X	296					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	acyltransferase activity			kidney(1)	1	all_epithelial(35;0.115)|Lung NSC(22;0.218)|all_lung(20;0.242)	all_hematologic(20;0.124)	STAD - Stomach adenocarcinoma(6;0.00113)			AATCTAAAAGTACTGTACCTC	0.393												
FJX1	24147	broad.mit.edu	37	11	35641182	35641182	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:35641182C>T	uc001mwh.2	+	1	1448	c.998C>T	c.(997-999)GCG>GTG	p.A333V		NM_014344	NP_055159	Q86VR8	FJX1_HUMAN	four jointed box 1 precursor	333						extracellular space					0	all_cancers(35;0.177)|all_lung(20;0.0238)|Lung NSC(22;0.0494)|all_epithelial(35;0.0739)	all_hematologic(20;0.107)				CCGGGCGGGGCGCTGGTCTTT	0.642												
LRRC4C	57689	broad.mit.edu	37	11	40136377	40136377	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:40136377A>G	uc001mxa.1	-	2	3430	c.1466T>C	c.(1465-1467)GTG>GCG	p.V489A	LRRC4C_uc001mxc.1_Missense_Mutation_p.V485A|LRRC4C_uc001mxd.1_Missense_Mutation_p.V485A|LRRC4C_uc001mxb.1_Missense_Mutation_p.V485A	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	489					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				AGAGGTGGTCACATTGGTGGT	0.522												
TTC17	55761	broad.mit.edu	37	11	43427103	43427103	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:43427103A>G	uc001mxi.2	+	12	1533	c.1519A>G	c.(1519-1521)ACA>GCA	p.T507A	TTC17_uc001mxh.2_Missense_Mutation_p.T507A|TTC17_uc010rfj.1_Missense_Mutation_p.T450A|TTC17_uc001mxj.2_Missense_Mutation_p.T277A	NM_018259	NP_060729	Q96AE7	TTC17_HUMAN	tetratricopeptide repeat domain 17	507							binding			ovary(5)	5						AGCAGATTGTACAGAAAGCTA	0.383												
ACCSL	390110	broad.mit.edu	37	11	44072889	44072889	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:44072889C>T	uc001mxw.1	+	4	696	c.640C>T	c.(640-642)CGG>TGG	p.R214W	ACCSL_uc009ykr.2_Missense_Mutation_p.R33W	NM_001031854	NP_001027025	Q4AC99	1A1L2_HUMAN	1-aminocyclopropane-1-carboxylate synthase	214							1-aminocyclopropane-1-carboxylate synthase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(5)	5						TTACAGCCTGCGGGAAGAAGT	0.493												
CHST1	8534	broad.mit.edu	37	11	45671419	45671419	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:45671419T>C	uc001mys.1	-	4	1726	c.1055A>G	c.(1054-1056)AAC>AGC	p.N352S		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	352	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		GGCCGCCGAGTTTCGCACGGT	0.672												
GYLTL1B	120071	broad.mit.edu	37	11	45947887	45947887	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:45947887T>C	uc001nbv.1	+	8	1108	c.997T>C	c.(997-999)TCT>CCT	p.S333P	GYLTL1B_uc001nbw.1_Missense_Mutation_p.S302P|GYLTL1B_uc001nbx.1_Missense_Mutation_p.S333P|GYLTL1B_uc001nby.1_5'Flank|GYLTL1B_uc001nbz.1_5'Flank	NM_152312	NP_689525	Q8N3Y3	LARG2_HUMAN	glycosyltransferase-like 1B	333	Lumenal (Potential).				muscle cell homeostasis	Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.226)		CTCTGAGGCGTCTGACCTCAA	0.612												
PHF21A	51317	broad.mit.edu	37	11	45992799	45992799	+	Silent	SNP	G	G	A	rs148927461		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:45992799G>A	uc001ncc.3	-	7	1104	c.480C>T	c.(478-480)ACC>ACT	p.T160T	PHF21A_uc001ncb.3_Silent_p.T160T|PHF21A_uc009ykx.2_Silent_p.T160T|PHF21A_uc001nce.2_Silent_p.T160T|PHF21A_uc001nca.1_5'UTR	NM_001101802	NP_001095272	Q96BD5	PF21A_HUMAN	BRAF35/HDAC2 complex isoform a	160					blood coagulation|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						TGTTGATGGCGGTCACCATAG	0.547												
AMBRA1	55626	broad.mit.edu	37	11	46564329	46564329	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:46564329C>A	uc010rgu.1	-	7	1598	c.1238G>T	c.(1237-1239)GGG>GTG	p.G413V	AMBRA1_uc010rgt.1_5'UTR|AMBRA1_uc009ylc.1_Missense_Mutation_p.G413V|AMBRA1_uc001ncu.1_Missense_Mutation_p.G323V|AMBRA1_uc001ncv.2_Missense_Mutation_p.G323V|AMBRA1_uc001ncw.2_Missense_Mutation_p.G323V|AMBRA1_uc001ncx.2_Missense_Mutation_p.G413V	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	413					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		TCCTGTCAACCCAGGAGCTAT	0.602												
ZNF408	79797	broad.mit.edu	37	11	46727107	46727107	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:46727107G>A	uc001nde.1	+	5	2087	c.1857G>A	c.(1855-1857)CCG>CCA	p.P619P	ZNF408_uc010rgw.1_Silent_p.P611P	NM_024741	NP_079017	Q9H9D4	ZN408_HUMAN	zinc finger protein 408	619	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding				0						ACACCCTCCCGCAGAGCCTCA	0.652												
F2	2147	broad.mit.edu	37	11	46747671	46747671	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:46747671C>T	uc001ndf.3	+	7	865	c.822C>T	c.(820-822)TGC>TGT	p.C274C	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	274	Kringle 2.				activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	GCGTGTGGTGCTATGTGGCCG	0.607												
F2	2147	broad.mit.edu	37	11	46747718	46747718	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:46747718A>G	uc001ndf.3	+	7	912	c.869A>G	c.(868-870)TAT>TGT	p.Y290C	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	290	Kringle 2.				activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	GACCTCAACTATTGTGGTGAG	0.577												
CKAP5	9793	broad.mit.edu	37	11	46765729	46765729	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:46765729T>C	uc001ndi.1	-	44	6053	c.5943A>G	c.(5941-5943)AAA>AAG	p.K1981K	CKAP5_uc009ylg.1_Silent_p.K1874K|CKAP5_uc001ndj.1_Silent_p.K1921K|CKAP5_uc001ndh.1_Silent_p.K910K	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	1981					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						GCTGAGAGAGTTTGCTGTGGA	0.537												
PACSIN3	29763	broad.mit.edu	37	11	47203980	47203980	+	Missense_Mutation	SNP	C	C	T	rs147642333	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:47203980C>T	uc001ndw.2	-	4	523	c.185G>A	c.(184-186)CGA>CAA	p.R62Q	PACSIN3_uc001ndx.2_Missense_Mutation_p.R62Q|PACSIN3_uc001ndy.2_Missense_Mutation_p.R62Q|PACSIN3_uc001ndz.2_RNA|PACSIN3_uc001nea.2_RNA	NM_016223	NP_057307	Q9UKS6	PACN3_HUMAN	protein kinase C and casein kinase substrate in	62	FCH.				endocytosis|negative regulation of endocytosis|positive regulation of membrane protein ectodomain proteolysis	cytoplasm|plasma membrane	cytoskeletal protein binding				0						CCTCCACTTTCGGGCCCAGTC	0.667												
SLC39A13	91252	broad.mit.edu	37	11	47436421	47436421	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:47436421G>A	uc009ylq.2	+	8	1051	c.880G>A	c.(880-882)GCT>ACT	p.A294T	SLC39A13_uc001nfd.2_3'UTR|SLC39A13_uc001nfe.1_RNA|SLC39A13_uc001nff.3_Missense_Mutation_p.A294T|SLC39A13_uc001nfg.3_Missense_Mutation_p.A294T	NM_001128225	NP_001121697	Q96H72	S39AD_HUMAN	solute carrier family 39 (zinc transporter),	294	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity				0				Lung(87;0.0936)		CCTACTGGGCGCTGGCTTCGC	0.662												
NUP160	23279	broad.mit.edu	37	11	47837550	47837550	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:47837550T>G	uc001ngm.2	-	12	1548	c.1463A>C	c.(1462-1464)GAT>GCT	p.D488A	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	488					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						CCAGGAAAGATCCAAATTCCT	0.348												
PTPRJ	5795	broad.mit.edu	37	11	48152056	48152056	+	Missense_Mutation	SNP	C	C	T	rs140690947	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:48152056C>T	uc001ngp.3	+	8	1758	c.1403C>T	c.(1402-1404)ACG>ATG	p.T468M	PTPRJ_uc001ngo.3_Missense_Mutation_p.T468M	NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	468	Extracellular (Potential).|Fibronectin type-III 5.				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						GTCAGCACGACGGAGATCGGC	0.468												
OR4C3	256144	broad.mit.edu	37	11	48347301	48347301	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:48347301T>C	uc010rhv.1	+	1	809	c.809T>C	c.(808-810)ATT>ACT	p.I270T		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GCCCACTTCATTGTTGTTGCC	0.438												
FOLH1	2346	broad.mit.edu	37	11	49197411	49197411	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:49197411T>C	uc001ngy.2	-	8	1280	c.1019A>G	c.(1018-1020)CAA>CGA	p.Q340R	FOLH1_uc001ngz.2_Missense_Mutation_p.Q340R|FOLH1_uc009yly.2_Missense_Mutation_p.Q325R|FOLH1_uc009ylz.2_Missense_Mutation_p.Q325R|FOLH1_uc009yma.2_Missense_Mutation_p.Q32R	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	340	NAALADase.|Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	GTCTCTTAACTGTGTAGAAAA	0.373												
OR4C46	119749	broad.mit.edu	37	11	51515506	51515506	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:51515506T>C	uc010ric.1	+	1	225	c.225T>C	c.(223-225)AAT>AAC	p.N75N		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	75	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCTCTGTCAATACCCCTAACC	0.483												
OR4A15	81328	broad.mit.edu	37	11	55135662	55135662	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:55135662T>C	uc010rif.1	+	1	303	c.303T>C	c.(301-303)TAT>TAC	p.Y101Y		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	101	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATACCGTCTATTCTACTGCAT	0.418												
OR4C16	219428	broad.mit.edu	37	11	55339775	55339775	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:55339775T>G	uc010rih.1	+	1	172	c.172T>G	c.(172-174)TTC>GTC	p.F58V		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				GAACCCAATGTTCTTCTTCCT	0.388												
OR4C11	219429	broad.mit.edu	37	11	55371683	55371683	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:55371683G>T	uc010rii.1	-	1	167	c.167C>A	c.(166-168)CCC>CAC	p.P56H		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	56	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GAAGTACATGGGGCTTCCTAG	0.378												
OR5W2	390148	broad.mit.edu	37	11	55681578	55681578	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:55681578T>C	uc010rir.1	-	1	481	c.481A>G	c.(481-483)ACA>GCA	p.T161A		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AAGGCCAGTGTCATATGTATC	0.448												
OR5AS1	219447	broad.mit.edu	37	11	55798339	55798339	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:55798339T>C	uc010riw.1	+	1	445	c.445T>C	c.(445-447)TAT>CAT	p.Y149H		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					TGTGTTGGCATATTTCAGTGG	0.458												
OR8H3	390152	broad.mit.edu	37	11	55890312	55890312	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:55890312A>G	uc001nii.1	+	1	464	c.464A>G	c.(463-465)GAC>GGC	p.D155G		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					GGCTTTATGGACTCCTTTGTC	0.448												
OR8H3	390152	broad.mit.edu	37	11	55890420	55890420	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:55890420A>G	uc001nii.1	+	1	572	c.572A>G	c.(571-573)GAC>GGC	p.D191G		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	191	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					TCCTGCACTGACACAGACAAC	0.423												
OR8J3	81168	broad.mit.edu	37	11	55904915	55904915	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:55904915A>T	uc010riz.1	-	1	280	c.280T>A	c.(280-282)TTC>ATC	p.F94I		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					CATTCATAGAATGAGGTAGTT	0.423												
OR5J2	282775	broad.mit.edu	37	11	55944776	55944776	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:55944776T>G	uc010rjb.1	+	1	683	c.683T>G	c.(682-684)ATC>AGC	p.I228S		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					AGCCTAAGGATCCACTCAGCA	0.463												
OR5T1	390155	broad.mit.edu	37	11	56043602	56043602	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:56043602C>T	uc001nio.1	+	1	488	c.488C>T	c.(487-489)GCT>GTT	p.A163V		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	163	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					TCCTATGTTGCTAGCATTTTA	0.433												
OR8J1	219477	broad.mit.edu	37	11	56128242	56128242	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:56128242A>G	uc010rjh.1	+	1	520	c.520A>G	c.(520-522)ATC>GTC	p.I174V		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTCTAATATAATCAATCATTT	0.368												
OR8J1	219477	broad.mit.edu	37	11	56128506	56128506	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:56128506C>G	uc010rjh.1	+	1	784	c.784C>G	c.(784-786)CCC>GCC	p.P262A		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GTATGTGCAGCCCCGAAGTAA	0.408												
APLNR	187	broad.mit.edu	37	11	57003976	57003976	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:57003976C>T	uc001njo.2	-	1	952	c.503G>A	c.(502-504)CGC>CAC	p.R168H	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	168	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						CCCGGTGGTGCGTAACACCAT	0.642												
TNKS1BP1	85456	broad.mit.edu	37	11	57077433	57077433	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:57077433A>G	uc001njr.2	-	5	3064	c.2752T>C	c.(2752-2754)TAC>CAC	p.Y918H	TNKS1BP1_uc001njs.2_Missense_Mutation_p.Y918H|TNKS1BP1_uc009ymd.1_Missense_Mutation_p.Y369H	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	918	Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				TGGCTGCTGTACCTACCATGG	0.572												
SLC43A3	29015	broad.mit.edu	37	11	57182546	57182546	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:57182546C>T	uc001nkg.2	-	10	1213	c.803G>A	c.(802-804)CGC>CAC	p.R268H	PRG2_uc001nke.2_Missense_Mutation_p.R167H|SLC43A3_uc001nkh.2_Missense_Mutation_p.R268H|SLC43A3_uc010rjr.1_Missense_Mutation_p.R281H|SLC43A3_uc009yme.2_Missense_Mutation_p.R268H|SLC43A3_uc001nki.2_Missense_Mutation_p.R268H|SLC43A3_uc009ymf.1_Missense_Mutation_p.R268H	NM_014096	NP_054815	Q8NBI5	S43A3_HUMAN	solute carrier family 43, member 3	268					transmembrane transport	integral to membrane				central_nervous_system(1)	1						CCAGAAGGAGCGGAGTTCCTG	0.572												
UBE2L6	9246	broad.mit.edu	37	11	57319863	57319863	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:57319863T>C	uc001nkn.1	-	4	526	c.430A>G	c.(430-432)ACC>GCC	p.T144A	UBE2L6_uc001nko.1_Missense_Mutation_p.T78A	NM_004223	NP_004214	O14933	UB2L6_HUMAN	ubiquitin-conjugating enzyme E2L 6 isoform 1	144					negative regulation of type I interferon production	cytosol	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						AATCGGAGGGTGAACTCTTCG	0.577												
CLP1	10978	broad.mit.edu	37	11	57428563	57428563	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:57428563T>C	uc001nkw.2	+	3	1072	c.933T>C	c.(931-933)TGT>TGC	p.C311C	CLP1_uc010rjw.1_Silent_p.C247C|CLP1_uc009yml.2_Silent_p.C311C	NM_006831	NP_006822	Q92989	CLP1_HUMAN	ATP/GTP-binding protein isoform 1	311					mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|siRNA loading onto RISC involved in RNA interference|targeting of mRNA for destruction involved in RNA interference|termination of RNA polymerase II transcription|tRNA splicing, via endonucleolytic cleavage and ligation	nucleoplasm|tRNA-intron endonuclease complex	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity			ovary(1)	1						TCCGAGGCTGTTTCTATCCCC	0.498												
ZDHHC5	25921	broad.mit.edu	37	11	57466793	57466793	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:57466793C>A	uc001nkx.1	+	11	3141	c.1885C>A	c.(1885-1887)CCA>ACA	p.P629T	ZDHHC5_uc001nky.1_Missense_Mutation_p.P576T|ZDHHC5_uc001nkz.1_Missense_Mutation_p.P443T	NM_015457	NP_056272	Q9C0B5	ZDHC5_HUMAN	zinc finger, DHHC domain containing 5	629						integral to membrane	acyltransferase activity|zinc ion binding			skin(1)	1						CCCAACAGCCCCATACCTGGG	0.597												
CTNND1	1500	broad.mit.edu	37	11	57564331	57564331	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:57564331T>C	uc001nmc.3	+	6	1394	c.823T>C	c.(823-825)TTT>CTT	p.F275L	CTNND1_uc001nlf.1_Missense_Mutation_p.F275L|CTNND1_uc001nlh.1_Missense_Mutation_p.F275L|CTNND1_uc001nlu.3_Missense_Mutation_p.F174L|CTNND1_uc001nlt.3_Missense_Mutation_p.F174L|CTNND1_uc001nls.3_Missense_Mutation_p.F174L|CTNND1_uc001nlw.3_Missense_Mutation_p.F174L|CTNND1_uc001nmf.3_Missense_Mutation_p.F275L|CTNND1_uc001nmd.3_Missense_Mutation_p.F221L|CTNND1_uc001nlk.3_Missense_Mutation_p.F221L|CTNND1_uc001nme.3_Missense_Mutation_p.F275L|CTNND1_uc001nll.3_Missense_Mutation_p.F221L|CTNND1_uc001nmg.3_Missense_Mutation_p.F221L|CTNND1_uc001nlj.3_Missense_Mutation_p.F221L|CTNND1_uc001nlr.3_Missense_Mutation_p.F221L|CTNND1_uc001nlp.3_Missense_Mutation_p.F221L|CTNND1_uc001nlx.3_Intron|CTNND1_uc001nlz.3_Intron|CTNND1_uc009ymn.2_Intron|CTNND1_uc001nlm.3_Missense_Mutation_p.F275L|CTNND1_uc001nly.3_Intron|CTNND1_uc001nmb.3_Intron|CTNND1_uc001nma.3_Intron|CTNND1_uc001nmi.3_Missense_Mutation_p.F174L|CTNND1_uc001nmh.3_Missense_Mutation_p.F275L|CTNND1_uc001nlq.3_Missense_Mutation_p.F174L|CTNND1_uc001nln.3_Missense_Mutation_p.F275L|CTNND1_uc001nli.3_Missense_Mutation_p.F275L|CTNND1_uc001nlo.3_Missense_Mutation_p.F174L|CTNND1_uc001nlv.3_Missense_Mutation_p.F174L	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	275					adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				TCTGCATCGCTTTCATCCAGA	0.557												
OR9I1	219954	broad.mit.edu	37	11	57886082	57886082	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:57886082T>C	uc001nml.1	-	1	835	c.835A>G	c.(835-837)ACA>GCA	p.T279A	OR9Q1_uc001nmj.2_Intron	NM_001005211	NP_001005211	Q8NGQ6	OR9I1_HUMAN	olfactory receptor, family 9, subfamily I,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Breast(21;0.0589)				ATGACCACTGTATAGAAGACA	0.478												
OR9Q2	219957	broad.mit.edu	37	11	57958080	57958080	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:57958080T>C	uc010rka.1	+	1	118	c.118T>C	c.(118-120)TTA>CTA	p.L40L		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				TGCCACTATGTTAGGGAACAC	0.498												
OR10Q1	219960	broad.mit.edu	37	11	57995544	57995544	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:57995544C>T	uc010rkd.1	-	1	804	c.804G>A	c.(802-804)CGG>CGA	p.R268R		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				AGGTGCTGGACCGAGGACGCA	0.602												
OR5B3	441608	broad.mit.edu	37	11	58170499	58170499	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:58170499T>A	uc010rkf.1	-	1	384	c.384A>T	c.(382-384)CTA>CTT	p.L128L		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	128	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TGGTGTAATGTAGGGGTTTGC	0.493												
OR5B2	390190	broad.mit.edu	37	11	58190667	58190667	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:58190667A>C	uc010rkg.1	-	1	68	c.68T>G	c.(67-69)ATC>AGC	p.I23S		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AAAGAGGGGGATCTGTAGTTC	0.458												
OR4D9	390199	broad.mit.edu	37	11	59283042	59283042	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:59283042G>A	uc010rkv.1	+	1	657	c.657G>A	c.(655-657)ACG>ACA	p.T219T		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	219	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATCTTACACGGTCATCTTGA	0.493												
PATL1	219988	broad.mit.edu	37	11	59424057	59424057	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:59424057G>T	uc001noe.3	-	6	781	c.638C>A	c.(637-639)CCT>CAT	p.P213H	PATL1_uc009yms.1_Missense_Mutation_p.P213H|PATL1_uc010rkw.1_Intron	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	213	Pro-rich.|Region N; interaction with decapping machinery.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						AACATGGACAGGCTTCGGACA	0.483												
PATL1	219988	broad.mit.edu	37	11	59425039	59425039	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:59425039T>C	uc001noe.3	-	5	728	c.585A>G	c.(583-585)CCA>CCG	p.P195P	PATL1_uc009yms.1_Silent_p.P195P|PATL1_uc010rkw.1_Intron	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	195	Pro-rich.|Region N; interaction with decapping machinery.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						TCTGTTTAGGTGGGGTGCCTA	0.488												
MRPL16	54948	broad.mit.edu	37	11	59574011	59574011	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:59574011C>T	uc001noh.2	-	4	779	c.565G>A	c.(565-567)GCT>ACT	p.A189T		NM_017840	NP_060310	Q9NX20	RM16_HUMAN	mitochondrial ribosomal protein L16 precursor	189							rRNA binding			central_nervous_system(1)	1						CGGCTCACAGCCTTTGCTGCG	0.522												
MS4A10	341116	broad.mit.edu	37	11	60557963	60557963	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:60557963A>G	uc001npz.1	+	2	251	c.155A>G	c.(154-156)AAG>AGG	p.K52R		NM_206893	NP_996776	Q96PG2	M4A10_HUMAN	membrane-spanning 4-domains, subfamily A, member	52	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2						AAGTCCCAGAAGAAGAGCAGC	0.622												
TMEM109	79073	broad.mit.edu	37	11	60689377	60689377	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:60689377C>T	uc001nqg.2	+	4	850	c.472C>T	c.(472-474)CGG>TGG	p.R158W	TMEM109_uc001nqh.2_Missense_Mutation_p.R158W|TMEM132A_uc001nqi.2_5'Flank|TMEM132A_uc001nqj.2_5'Flank	NM_024092	NP_076997	Q9BVC6	TM109_HUMAN	transmembrane protein 109 precursor	158						integral to membrane|nuclear outer membrane|sarcoplasmic reticulum membrane					0						CTTGCTGGGGCGGATCCTGTG	0.667												
CD6	923	broad.mit.edu	37	11	60781400	60781400	+	Missense_Mutation	SNP	T	T	C	rs112948328		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:60781400T>C	uc001nqq.2	+	8	1524	c.1301T>C	c.(1300-1302)GTA>GCA	p.V434A	CD6_uc001nqp.2_Missense_Mutation_p.V434A|CD6_uc001nqr.2_Intron|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Missense_Mutation_p.V434A	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	434	Cytoplasmic (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						GCCCTCCCCGTAATGGTGAAC	0.562												
PGA3	643834	broad.mit.edu	37	11	60971733	60971733	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:60971733T>A	uc001nqx.2	+	2	264	c.211T>A	c.(211-213)TAC>AAC	p.Y71N	PGA3_uc010rld.1_Missense_Mutation_p.Y71N	NM_001079807	NP_001073275			pepsinogen 3, group I precursor											ovary(1)|skin(1)	2						CCTGGAGAACTACCTGGATGT	0.607												
DAK	26007	broad.mit.edu	37	11	61106890	61106890	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:61106890A>C	uc001nre.2	+	5	726	c.469A>C	c.(469-471)ACG>CCG	p.T157P	DDB1_uc010rlf.1_Intron|DAK_uc009ynm.1_Missense_Mutation_p.T87P	NM_015533	NP_056348	Q3LXA3	DHAK_HUMAN	dihydroxyacetone kinase 2	157	DhaK.				glycerol metabolic process	cytosol	ATP binding|FAD-AMP lyase (cyclizing) activity|glycerone kinase activity|metal ion binding				0						GCTGTGCGGCACGGTGCTTAT	0.617												
DAK	26007	broad.mit.edu	37	11	61111397	61111397	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:61111397G>A	uc001nre.2	+	12	1309	c.1052G>A	c.(1051-1053)CGG>CAG	p.R351Q	DDB1_uc010rlf.1_5'Flank|DAK_uc009ynm.1_Missense_Mutation_p.R281Q	NM_015533	NP_056348	Q3LXA3	DHAK_HUMAN	dihydroxyacetone kinase 2	351					glycerol metabolic process	cytosol	ATP binding|FAD-AMP lyase (cyclizing) activity|glycerone kinase activity|metal ion binding				0						AAGCGGAGCCGGGTAGCCCCT	0.607												
DAGLA	747	broad.mit.edu	37	11	61511005	61511005	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:61511005A>G	uc001nsa.2	+	20	2284	c.2173A>G	c.(2173-2175)AGC>GGC	p.S725G		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	725	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		CCTCTGCAGGAGCAAGTCCCA	0.632												
RAB3IL1	5866	broad.mit.edu	37	11	61675578	61675578	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:61675578A>T	uc001nso.2	-	2	370	c.212T>A	c.(211-213)ATC>AAC	p.I71N	RAB3IL1_uc001nsp.2_Missense_Mutation_p.I118N	NM_013401	NP_037533	Q8TBN0	R3GEF_HUMAN	RAB3A interacting protein (rabin3)-like 1	71							protein binding			skin(2)|central_nervous_system(1)	3						CTTCTCTCGGATCTCCATGGA	0.672												
AHNAK	79026	broad.mit.edu	37	11	62285758	62285758	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:62285758A>G	uc001ntl.2	-	5	16431	c.16131T>C	c.(16129-16131)TCT>TCC	p.S5377S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	5377					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TGATGTCACCAGAGACAGCCA	0.517												
AHNAK	79026	broad.mit.edu	37	11	62297276	62297276	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:62297276T>C	uc001ntl.2	-	5	4913	c.4613A>G	c.(4612-4614)GAC>GGC	p.D1538G	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1538					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				AACACCAAGGTCAGCCTTGGG	0.507												
AHNAK	79026	broad.mit.edu	37	11	62299953	62299953	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:62299953G>A	uc001ntl.2	-	5	2236	c.1936C>T	c.(1936-1938)CCA>TCA	p.P646S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	646					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TGAACATCTGGACCTTCCCCT	0.522												
TUT1	64852	broad.mit.edu	37	11	62342880	62342880	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:62342880A>G	uc001nto.2	-	9	2463	c.2425T>C	c.(2425-2427)TGG>CGG	p.W809R	EEF1G_uc001ntm.1_5'Flank|EEF1G_uc010rlw.1_5'Flank|EEF1G_uc001ntn.1_5'Flank|TUT1_uc001ntp.1_Missense_Mutation_p.W305R	NM_022830	NP_073741	Q9H6E5	STPAP_HUMAN	terminal uridylyl transferase 1, U6	771					mRNA cleavage|mRNA polyadenylation|snRNA processing	nuclear speck|nucleolus	ATP binding|enzyme binding|mRNA 3'-UTR binding|polynucleotide adenylyltransferase activity|RNA uridylyltransferase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2						ACTCGGTGCCACAAGGCACAG	0.677												
MTA2	9219	broad.mit.edu	37	11	62364226	62364226	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:62364226C>A	uc001ntq.1	-	9	1146	c.765G>T	c.(763-765)CAG>CAT	p.Q255H	MTA2_uc010rlx.1_Missense_Mutation_p.Q82H	NM_004739	NP_004730	O94776	MTA2_HUMAN	metastasis-associated protein 2	255	ELM2.				chromatin assembly or disassembly	NuRD complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CCGGGCCTCCCTGGGGTACCA	0.557												
GANAB	23193	broad.mit.edu	37	11	62397917	62397917	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:62397917G>T	uc001nub.2	-	12	1480	c.1447C>A	c.(1447-1449)CTG>ATG	p.L483M	GANAB_uc001nua.2_Missense_Mutation_p.L505M|GANAB_uc001nuc.2_Missense_Mutation_p.L386M|GANAB_uc010rma.1_Missense_Mutation_p.L391M|GANAB_uc010rmb.1_Missense_Mutation_p.L369M	NM_198334	NP_938148	Q14697	GANAB_HUMAN	neutral alpha-glucosidase AB isoform 2	483					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|Golgi apparatus|melanosome	carbohydrate binding|glucan 1,3-alpha-glucosidase activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5						AGGTTCCGCAGCTCCTCGTGA	0.577												
INTS5	80789	broad.mit.edu	37	11	62417003	62417003	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:62417003A>G	uc001nud.2	-	2	602	c.549T>C	c.(547-549)TGT>TGC	p.C183C	GANAB_uc001nua.2_5'Flank|GANAB_uc001nub.2_5'Flank|GANAB_uc001nuc.2_5'Flank|GANAB_uc010rma.1_5'Flank|GANAB_uc010rmb.1_5'Flank	NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	183					snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						GCGTGGCCCTACAACCCATCC	0.562												
C11orf83	790955	broad.mit.edu	37	11	62439509	62439509	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:62439509A>G	uc001nui.3	+	2	297	c.205A>G	c.(205-207)ACC>GCC	p.T69A	C11orf48_uc001nue.2_5'Flank|C11orf48_uc001nuf.2_5'Flank|C11orf48_uc010rmd.1_5'Flank	NM_001085372	NP_001078841	Q6UW78	CK083_HUMAN	hypothetical protein LOC790955 precursor	69						extracellular region					0						GGAGGCAGCGACCACGCAGGA	0.682												
ZBTB3	79842	broad.mit.edu	37	11	62520195	62520195	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:62520195T>G	uc001nuz.2	-	2	1214	c.1092A>C	c.(1090-1092)GAA>GAC	p.E364D		NM_024784	NP_079060	Q9H5J0	ZBTB3_HUMAN	zinc finger and BTB domain containing 3	364					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3						CATCAGTCTCTTCATCAGAGA	0.398												
SLC22A6	9356	broad.mit.edu	37	11	62751091	62751091	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:62751091T>C	uc001nwk.2	-	3	853	c.546A>G	c.(544-546)GCA>GCG	p.A182A	SLC22A6_uc001nwl.2_Silent_p.A182A|SLC22A6_uc001nwj.2_Silent_p.A182A|SLC22A6_uc001nwm.2_Silent_p.A182A	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	182	Helical; (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						GGAAGTTGGGTGCGAAGGCTG	0.592												
SLC22A25	387601	broad.mit.edu	37	11	62931516	62931516	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:62931516A>G	uc001nwr.1	-	9	1424	c.1424T>C	c.(1423-1425)TTT>TCT	p.F475S	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	475	Helical; Name=11; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						AATATTAGCAAAGTTTCCAGT	0.413												
RTN3	10313	broad.mit.edu	37	11	63487482	63487482	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:63487482C>T	uc001nxq.2	+	3	1695	c.1508C>T	c.(1507-1509)ACA>ATA	p.T503I	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Missense_Mutation_p.T484I|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Missense_Mutation_p.T391I|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	503					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						TCTGATGACACAGTAATAGAG	0.408												
RCOR2	283248	broad.mit.edu	37	11	63681926	63681926	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:63681926C>T	uc001nyc.2	-	6	956	c.568G>A	c.(568-570)GCC>ACC	p.A190T		NM_173587	NP_775858	Q8IZ40	RCOR2_HUMAN	REST corepressor 2	190					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)|skin(1)	2						AGCCGCCGGGCCTGTCTGTCC	0.597												
FLRT1	23769	broad.mit.edu	37	11	63884888	63884888	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:63884888G>A	uc001nyi.1	+	2	1490	c.1149G>A	c.(1147-1149)CCG>CCA	p.P383P	MACROD1_uc001nyh.2_Intron	NM_013280	NP_037412	Q9NZU1	FLRT1_HUMAN	fibronectin leucine rich transmembrane protein	355	Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity				0						AGACGGGGCCGCAGGGCGGCG	0.647												
STIP1	10963	broad.mit.edu	37	11	63965054	63965054	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:63965054C>T	uc001nyk.1	+	7	1036	c.889C>T	c.(889-891)CGA>TGA	p.R297*	STIP1_uc010rnb.1_Nonsense_Mutation_p.R273*	NM_006819	NP_006810	P31948	STIP1_HUMAN	stress-induced-phosphoprotein 1	297					axon guidance|response to stress	Golgi apparatus|nucleus				ovary(2)|liver(1)	3						AGAAGACTATCGACAGATTGC	0.517												
CCDC88B	283234	broad.mit.edu	37	11	64120560	64120560	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:64120560C>T	uc001nzy.2	+	21	3579	c.3535C>T	c.(3535-3537)CGG>TGG	p.R1179W	CCDC88B_uc009ypo.1_Missense_Mutation_p.R1176W|CCDC88B_uc001oaa.2_Missense_Mutation_p.R331W|CCDC88B_uc001oab.1_Missense_Mutation_p.R10W|CCDC88B_uc001oac.2_5'Flank	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	1179	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GTCTCGGGAGCGGGGTGAGCT	0.682												
NRXN2	9379	broad.mit.edu	37	11	64398015	64398015	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:64398015C>T	uc001oap.2	-	4	989	c.478G>A	c.(478-480)GTG>ATG	p.V160M	NRXN2_uc001oar.2_Missense_Mutation_p.V1206M|NRXN2_uc001oas.2_Missense_Mutation_p.V1166M|NRXN2_uc001oaq.2_Missense_Mutation_p.V873M	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	160	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						TCCGTGCCCACGTTAAAGATC	0.602												
NRXN2	9379	broad.mit.edu	37	11	64419563	64419563	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:64419563C>T	uc001oar.2	-	14	2919	c.2480G>A	c.(2479-2481)AGG>AAG	p.R827K	NRXN2_uc001oas.2_Missense_Mutation_p.R787K|NRXN2_uc001oaq.2_Missense_Mutation_p.R494K	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	183	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CCGGACCACCCTCACCGTGTG	0.612												
ATG2A	23130	broad.mit.edu	37	11	64677290	64677290	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:64677290T>C	uc001obx.2	-	14	2085	c.1970A>G	c.(1969-1971)GAC>GGC	p.D657G		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	657							protein binding			ovary(1)|central_nervous_system(1)	2						CGCCCAGGGGTCCGGCTCAGG	0.711												
GPHA2	170589	broad.mit.edu	37	11	64702546	64702546	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:64702546G>A	uc001oca.2	-	3	260	c.205C>T	c.(205-207)CGG>TGG	p.R69W		NM_130769	NP_570125	Q96T91	GPHA2_HUMAN	glycoprotein hormone alpha 2 precursor	69						extracellular region	hormone activity				0						ACAGAGTACCGAGAAGGGAAG	0.622												
SAC3D1	29901	broad.mit.edu	37	11	64811817	64811817	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:64811817T>C	uc001ocm.2	+	2	1084	c.695T>C	c.(694-696)TTC>TCC	p.F232S	SAC3D1_uc010rnv.1_Missense_Mutation_p.F219S	NM_013299	NP_037431			SAC3 domain containing 1												0						GCCCGCCTGTTCCGTCTGCTC	0.682												
ZFPL1	7542	broad.mit.edu	37	11	64855573	64855573	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:64855573T>C	uc001ocq.1	+	8	1085	c.920T>C	c.(919-921)GTG>GCG	p.V307A		NM_006782	NP_006773	O95159	ZFPL1_HUMAN	zinc finger protein-like 1	307	Lumenal (Potential).				regulation of transcription, DNA-dependent|vesicle-mediated transport	Golgi apparatus|integral to membrane|nucleus	DNA binding|zinc ion binding			ovary(1)	1						CACATCCGCGTGGGCCCCTCC	0.652												
C11orf2	738	broad.mit.edu	37	11	64876190	64876190	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:64876190C>T	uc001ocr.1	+	5	1287	c.1247C>T	c.(1246-1248)GCG>GTG	p.A416V	C11orf2_uc001ocs.1_Missense_Mutation_p.A292V	NM_013265	NP_037397	Q9UID3	FFR_HUMAN	chromosome 11 open reading frame 2	416					lipid transport|protein transport	Golgi apparatus|integral to membrane					0						GGTCTCCGGGCGGCCTTCCTG	0.736												
TM7SF2	7108	broad.mit.edu	37	11	64880808	64880808	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:64880808G>A	uc001oct.2	+	4	568	c.421G>A	c.(421-423)GCT>ACT	p.A141T	TM7SF2_uc010rny.1_Missense_Mutation_p.A25T|TM7SF2_uc001ocu.2_Missense_Mutation_p.A141T|TM7SF2_uc001ocv.2_Missense_Mutation_p.A162T	NM_003273	NP_003264	O76062	ERG24_HUMAN	transmembrane 7 superfamily member 2	141	Helical; (Potential).				cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane	delta14-sterol reductase activity			ovary(1)	1						CACCCTCACCGCTTTCATCTT	0.647											OREG0021072	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
SPDYC	387778	broad.mit.edu	37	11	64940375	64940375	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:64940375G>A	uc010rnz.1	+	6	737	c.737G>A	c.(736-738)CGC>CAC	p.R246H		NM_001008778	NP_001008778	Q5MJ68	SPDYC_HUMAN	speedy C	246					cell cycle	nucleus	protein kinase binding				0						GAATGTCATCGCCCTCCCTCC	0.567												
TIGD3	220359	broad.mit.edu	37	11	65123616	65123616	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:65123616A>G	uc001odo.3	+	2	500	c.337A>G	c.(337-339)ATG>GTG	p.M113V		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	113	H-T-H motif (By similarity).|HTH CENPB-type.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						GGCCGATATCATGGGCCAGGA	0.642												
SLC25A45	283130	broad.mit.edu	37	11	65143909	65143909	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:65143909C>T	uc001odp.1	-	6	1258	c.836G>A	c.(835-837)AGC>AAC	p.S279N	SLC25A45_uc009yqi.1_Missense_Mutation_p.S217N|SLC25A45_uc001odq.1_Missense_Mutation_p.S255N|SLC25A45_uc001odr.1_Missense_Mutation_p.S279N|SLC25A45_uc001ods.1_Missense_Mutation_p.S237N|SLC25A45_uc001odt.1_Missense_Mutation_p.S237N	NM_001077241	NP_001070709	Q8N413	S2545_HUMAN	solute carrier family 25, member 45 isoform b	279	Helical; Name=6; (Potential).|Solcar 3.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						ATATTCGTAGCTGAGGAAGGT	0.617												
EHBP1L1	254102	broad.mit.edu	37	11	65351025	65351025	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:65351025T>C	uc001oeo.3	+	9	3147	c.2882T>C	c.(2881-2883)GTT>GCT	p.V961A	EHBP1L1_uc001oep.1_Intron	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	961										central_nervous_system(1)	1						GAGATGAAGGTTTTAGAGTCT	0.552												
OVOL1	5017	broad.mit.edu	37	11	65562117	65562117	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:65562117G>A	uc001ofp.2	+	3	743	c.427G>A	c.(427-429)GTC>ATC	p.V143I	OVOL1_uc001ofq.2_Missense_Mutation_p.V81I	NM_004561	NP_004552	O14753	OVOL1_HUMAN	OVO-like 1 binding protein	143					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				READ - Rectum adenocarcinoma(159;0.17)		TCACAACGACGTCAAGAGGCA	0.582												
EFEMP2	30008	broad.mit.edu	37	11	65635808	65635808	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:65635808T>C	uc001ofy.3	-	9	1126	c.932A>G	c.(931-933)GAC>GGC	p.D311G	EFEMP2_uc001ofz.2_RNA|EFEMP2_uc001oga.2_Missense_Mutation_p.D311G	NM_016938	NP_058634	O95967	FBLN4_HUMAN	EGF-containing fibulin-like extracellular matrix	311	EGF-like 6; calcium-binding (Potential).				blood coagulation	basement membrane|membrane	calcium ion binding|extracellular matrix structural constituent|protein binding|transmembrane receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(159;0.169)		GCGGTTGGTGTCCACGCAGCG	0.602												
CTSW	1521	broad.mit.edu	37	11	65650552	65650552	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:65650552A>G	uc001ogc.1	+	8	800	c.758A>G	c.(757-759)TAC>TGC	p.Y253C	CTSW_uc001ogb.1_Missense_Mutation_p.Y253C	NM_001335	NP_001326	P56202	CATW_HUMAN	cathepsin W preproprotein	253					immune response|proteolysis		cysteine-type endopeptidase activity			central_nervous_system(1)	1				READ - Rectum adenocarcinoma(159;0.168)		ATTGCGCAGTACCTGGCCACT	0.592												
SART1	9092	broad.mit.edu	37	11	65734962	65734962	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:65734962G>A	uc001ogl.2	+	11	1426	c.1334G>A	c.(1333-1335)CGC>CAC	p.R445H		NM_005146	NP_005137	O43290	SNUT1_HUMAN	squamous cell carcinoma antigen recognized by T	445					cell cycle arrest|induction of apoptosis by intracellular signals|positive regulation of cytotoxic T cell differentiation|spliceosomal snRNP assembly	Cajal body|catalytic step 2 spliceosome|cytosol				ovary(1)	1						CGGGGTCGCCGCCGAGTGTCC	0.672												
SART1	9092	broad.mit.edu	37	11	65745360	65745360	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:65745360C>T	uc001ogl.2	+	17	2254	c.2162C>T	c.(2161-2163)ACA>ATA	p.T721I		NM_005146	NP_005137	O43290	SNUT1_HUMAN	squamous cell carcinoma antigen recognized by T	721					cell cycle arrest|induction of apoptosis by intracellular signals|positive regulation of cytotoxic T cell differentiation|spliceosomal snRNP assembly	Cajal body|catalytic step 2 spliceosome|cytosol				ovary(1)	1						CGGAAACTCACACCCAAGGAG	0.617												
GAL3ST3	89792	broad.mit.edu	37	11	65810615	65810616	+	Missense_Mutation	DNP	TC	TC	CT			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:65810615_65810616TC>CT	uc001ogv.2	-	2	818_819	c.658_659GA>AG	c.(658-660)GAC>AGC	p.D220S	GAL3ST3_uc001ogw.2_Missense_Mutation_p.D220S	NM_033036	NP_149025	Q96A11	G3ST3_HUMAN	galactose-3-O-sulfotransferase 3	220	Lumenal (Potential).				monosaccharide metabolic process|oligosaccharide metabolic process|poly-N-acetyllactosamine metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|carbohydrate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(1)	1						GTAGGCGGCGTCGTCGCGCGGG	0.668												
GAL3ST3	89792	broad.mit.edu	37	11	65811111	65811111	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:65811111G>A	uc001ogv.2	-	2	323	c.163C>T	c.(163-165)CGG>TGG	p.R55W	GAL3ST3_uc001ogw.2_Missense_Mutation_p.R55W	NM_033036	NP_149025	Q96A11	G3ST3_HUMAN	galactose-3-O-sulfotransferase 3	55	Lumenal (Potential).				monosaccharide metabolic process|oligosaccharide metabolic process|poly-N-acetyllactosamine metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|carbohydrate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(1)	1						GGCGAGTTCCGCAGAGGAGGG	0.652												
SF3B2	10992	broad.mit.edu	37	11	65829239	65829239	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:65829239T>C	uc001ogy.1	+	15	1902	c.1862T>C	c.(1861-1863)GTA>GCA	p.V621A		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	621					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						GGGATGCCAGTAGGACCAGTG	0.542												
SF3B2	10992	broad.mit.edu	37	11	65830509	65830509	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:65830509C>T	uc001ogy.1	+	17	2047	c.2007C>T	c.(2005-2007)GGC>GGT	p.G669G		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	669					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						ATGCTGGTGGCTGGGGCAAAC	0.502												
CD248	57124	broad.mit.edu	37	11	66083132	66083132	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:66083132G>A	uc001ohm.1	-	1	1384	c.1367C>T	c.(1366-1368)ACG>ATG	p.T456M		NM_020404	NP_065137	Q9HCU0	CD248_HUMAN	tumor endothelial marker 1 precursor	456	Pro-rich.|Extracellular (Potential).					integral to membrane|proteinaceous extracellular matrix	calcium ion binding|sugar binding			large_intestine(3)	3					Cefalotin(DB00456)	TGTGGGATGCGTGGCAGAGAC	0.662												
ACTN3	89	broad.mit.edu	37	11	66330379	66330379	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:66330379C>T	uc001oio.1	+	21	2519	c.2501C>T	c.(2500-2502)ACG>ATG	p.T834M	ACTN3_uc010rpi.1_RNA	NM_001104	NP_001095	Q08043	ACTN3_HUMAN	actinin, alpha 3	834					focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle				0						GAGACTGACACGACTGAGCAA	0.592												
CTSF	8722	broad.mit.edu	37	11	66335072	66335072	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:66335072C>T	uc001oip.2	-	3	464	c.374G>A	c.(373-375)GGC>GAC	p.G125D		NM_003793	NP_003784	Q9UBX1	CATF_HUMAN	cathepsin F precursor	125					proteolysis	lysosome	cysteine-type endopeptidase activity				0						GTCCACTGGGCCACAGTCCTT	0.587												
CCDC87	55231	broad.mit.edu	37	11	66358970	66358970	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:66358970T>C	uc001oiq.3	-	1	1585	c.1517A>G	c.(1516-1518)CAC>CGC	p.H506R	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	506										ovary(1)|skin(1)	2						AAAATGTAAGTGGTCAGAAGA	0.458												
RBM14	10432	broad.mit.edu	37	11	66392441	66392441	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:66392441A>G	uc001oit.2	+	2	1233	c.1094A>G	c.(1093-1095)TAC>TGC	p.Y365C	RBM14_uc009yrh.2_Intron|RBM14_uc009yri.2_Intron|RBM4_uc009yrj.2_Intron|RBM4_uc009yrk.2_Intron	NM_006328	NP_006319	Q96PK6	RBM14_HUMAN	RNA binding motif protein 14	365	Ala-rich.				DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|histone deacetylation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus	mediator complex|ribonucleoprotein complex|transcription factor complex	ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|protein binding, bridging|RNA binding|RNA polymerase II transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						GCTTCTTCCTACAACACCCAG	0.617												
RBM4	5936	broad.mit.edu	37	11	66411167	66411167	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:66411167C>T	uc009yrj.2	+	3	1147	c.659C>T	c.(658-660)GCC>GTC	p.A220V	RBM4_uc009yrk.2_Missense_Mutation_p.A195V|RBM4_uc001oiw.1_Missense_Mutation_p.A220V|RBM4_uc001oix.1_Intron|RBM4_uc010rpj.1_Intron|RBM4_uc001oiy.1_Missense_Mutation_p.A220V|RBM4_uc001oiz.1_Missense_Mutation_p.A220V	NM_002896	NP_002887	Q9BWF3	RBM4_HUMAN	RNA binding motif protein 4	220	Interaction with TNPO3.				circadian regulation of gene expression|entrainment of circadian clock by photoperiod|mRNA processing|negative regulation of translation in response to stress|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|positive regulation of muscle cell differentiation|regulation of alternative nuclear mRNA splicing, via spliceosome|regulation of nucleocytoplasmic transport|RNA splicing|stress-activated MAPK cascade	nuclear speck|nucleolus|stress granule	miRNA binding|mRNA 3'-UTR binding|nucleotide binding|protein binding|zinc ion binding			ovary(1)	1				Lung(977;0.0112)|LUSC - Lung squamous cell carcinoma(976;0.0266)		GCGCTCGATGCCTACTACAAG	0.552												
SPTBN2	6712	broad.mit.edu	37	11	66468627	66468627	+	Silent	SNP	G	G	A	rs139352096		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:66468627G>A	uc001ojd.2	-	16	3015	c.2943C>T	c.(2941-2943)ATC>ATT	p.I981I		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	981	Spectrin 7.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GGGTGGACTCGATGACTTTGG	0.647												
CARNS1	57571	broad.mit.edu	37	11	67191326	67191326	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:67191326C>T	uc009yrp.2	+	9	2190	c.1738C>T	c.(1738-1740)CGA>TGA	p.R580*	PPP1CA_uc001okx.1_5'Flank|CARNS1_uc001olc.3_Nonsense_Mutation_p.R719*	NM_020811	NP_065862	A5YM72	CRNS1_HUMAN	ATP-grasp domain containing 1	580	ATP-grasp.|ATP (By similarity).				carnosine biosynthetic process		ATP binding|carnosine synthase activity|metal ion binding				0						CCGGATTACCCGAGACTTGCA	0.632												
CABP4	57010	broad.mit.edu	37	11	67223796	67223796	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:67223796G>A	uc001olo.2	+	3	501	c.424G>A	c.(424-426)GAC>AAC	p.D142N	CABP4_uc001oln.2_Missense_Mutation_p.D37N	NM_145200	NP_660201	P57796	CABP4_HUMAN	calcium binding protein 4	142	1 (Potential).|EF-hand 1.				visual perception	cytoplasm|extracellular region|terminal button	calcium ion binding				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			CGAGGAGTTTGACACTGACCG	0.652												
PITPNM1	9600	broad.mit.edu	37	11	67267701	67267701	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:67267701C>A	uc001olx.2	-	5	1021	c.832G>T	c.(832-834)GCC>TCC	p.A278S	PITPNM1_uc001olw.2_5'Flank|PITPNM1_uc001oly.2_Missense_Mutation_p.A278S|PITPNM1_uc001olz.2_Missense_Mutation_p.A278S	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	278					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						GCAGACCGGGCCTCGGTGCTC	0.697												
TBX10	347853	broad.mit.edu	37	11	67399796	67399796	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:67399796C>T	uc001omp.2	-	7	949	c.861G>A	c.(859-861)AGG>AGA	p.R287R	NUDT8_uc001omn.2_5'Flank|NUDT8_uc001omo.1_5'Flank	NM_005995	NP_005986	O75333	TBX10_HUMAN	T-box 10	287					anatomical structure morphogenesis|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						TACCTTTCTCCCTGTCTGTGG	0.622												
ACY3	91703	broad.mit.edu	37	11	67410319	67410319	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:67410319T>C	uc001omq.2	-	8	1007	c.836A>G	c.(835-837)TAC>TGC	p.Y279C		NM_080658	NP_542389	Q96HD9	ACY3_HUMAN	aspartoacylase 3	279					interspecies interaction between organisms	apical plasma membrane|cytoplasm	hydrolase activity, acting on ester bonds|metal ion binding				0					L-Aspartic Acid(DB00128)	GAACACGGGGTACACCGTGGA	0.582												
C11orf24	53838	broad.mit.edu	37	11	68029961	68029961	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:68029961C>T	uc001onr.3	-	4	944	c.502G>A	c.(502-504)GCG>ACG	p.A168T	C11orf24_uc001ons.2_Missense_Mutation_p.A168T	NM_022338	NP_071733	Q96F05	CK024_HUMAN	hypothetical protein LOC53838 precursor	168	Extracellular (Potential).					integral to membrane					0						GACGTGGGCGCGGGGAGTGCA	0.632												
LRP5	4041	broad.mit.edu	37	11	68192577	68192577	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:68192577T>C	uc001ont.2	+	15	3319	c.3244T>C	c.(3244-3246)TAC>CAC	p.Y1082H	LRP5_uc009ysg.2_Missense_Mutation_p.Y492H	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1082	LDL-receptor class B 18.|Beta-propeller 4.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CAGGTACCTGTACTTCACCAA	0.677												
MTL5	9633	broad.mit.edu	37	11	68475936	68475936	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:68475936A>G	uc001ooc.2	-	10	1507	c.1367T>C	c.(1366-1368)GTG>GCG	p.V456A		NM_004923	NP_004914	Q9Y4I5	MTL5_HUMAN	metallothionein-like 5, testis-specific isoform	456					cell differentiation|cellular metal ion homeostasis|multicellular organismal development|response to metal ion|spermatogenesis	cytoplasm|nucleus|soluble fraction	metal ion binding			ovary(2)|breast(1)	3	Esophageal squamous(3;4.37e-12)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.185)			TGTGGCCTCCACCACCTCCCA	0.532												
IGHMBP2	3508	broad.mit.edu	37	11	68678967	68678967	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:68678967G>A	uc001ook.1	+	5	709	c.607G>A	c.(607-609)GCG>ACG	p.A203T	IGHMBP2_uc001ooj.1_RNA	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	203					cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GGTTTTATTTGCGCTGTCTCA	0.522												
IGHMBP2	3508	broad.mit.edu	37	11	68705747	68705747	+	Silent	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:68705747A>C	uc001ook.1	+	14	2811	c.2709A>C	c.(2707-2709)ACA>ACC	p.T903T	IGHMBP2_uc001ool.1_Silent_p.T527T	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	903	AN1-type.				cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CCAAGTGCACAGCCGGCGTCA	0.642												
TPCN2	219931	broad.mit.edu	37	11	68846360	68846360	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:68846360A>T	uc001oos.2	+	16	1527	c.1411A>T	c.(1411-1413)ATT>TTT	p.I471F	TPCN2_uc001oor.2_Missense_Mutation_p.I386F|TPCN2_uc010rqg.1_Missense_Mutation_p.I471F|TPCN2_uc001oot.2_RNA	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	471	Helical; Name=S2 of repeat II; (Potential).				cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CCCCTTTCAGATTCTCAACTG	0.592												
ORAOV1	220064	broad.mit.edu	37	11	69482723	69482723	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:69482723A>G	uc001opc.2	-	4	443	c.285T>C	c.(283-285)GAT>GAC	p.D95D	ORAOV1_uc010rqi.1_Silent_p.D95D|ORAOV1_uc009ysm.2_RNA|ORAOV1_uc001opd.2_Silent_p.D36D	NM_153451	NP_703152	Q8WV07	ORAV1_HUMAN	oral cancer overexpressed 1	95											0	all_cancers(3;5.53e-114)|all_epithelial(3;1.34e-121)|Breast(3;9.28e-34)|all_lung(4;1.99e-21)|Lung NSC(4;4.65e-21)|Hepatocellular(3;6.15e-15)|Melanoma(5;1.89e-05)|Ovarian(3;0.0348)		Epithelial(3;5.64e-57)|all cancers(3;5.98e-51)|BRCA - Breast invasive adenocarcinoma(2;5.49e-48)|Lung(3;1.13e-16)|LUSC - Lung squamous cell carcinoma(11;3.74e-15)|STAD - Stomach adenocarcinoma(18;0.0278)|LUAD - Lung adenocarcinoma(13;0.0537)			AAGTAGGGTCATCATAAGGGA	0.413												
ORAOV1	220064	broad.mit.edu	37	11	69486577	69486577	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:69486577T>C	uc001opc.2	-	3	325	c.167A>G	c.(166-168)TAC>TGC	p.Y56C	ORAOV1_uc010rqi.1_Missense_Mutation_p.Y56C|ORAOV1_uc009ysm.2_Intron|ORAOV1_uc001opd.2_Intron|ORAOV1_uc001ope.1_Missense_Mutation_p.Y56C	NM_153451	NP_703152	Q8WV07	ORAV1_HUMAN	oral cancer overexpressed 1	56											0	all_cancers(3;5.53e-114)|all_epithelial(3;1.34e-121)|Breast(3;9.28e-34)|all_lung(4;1.99e-21)|Lung NSC(4;4.65e-21)|Hepatocellular(3;6.15e-15)|Melanoma(5;1.89e-05)|Ovarian(3;0.0348)		Epithelial(3;5.64e-57)|all cancers(3;5.98e-51)|BRCA - Breast invasive adenocarcinoma(2;5.49e-48)|Lung(3;1.13e-16)|LUSC - Lung squamous cell carcinoma(11;3.74e-15)|STAD - Stomach adenocarcinoma(18;0.0278)|LUAD - Lung adenocarcinoma(13;0.0537)			AAAACCTTGGTAGCACCCGAT	0.413												
CTTN	2017	broad.mit.edu	37	11	70265913	70265913	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:70265913C>A	uc001opv.3	+	9	836	c.630C>A	c.(628-630)GCC>GCA	p.A210A	CTTN_uc001opu.2_Silent_p.A210A|CTTN_uc001opw.3_Silent_p.A210A|CTTN_uc010rqm.1_5'Flank|CTTN_uc001opx.2_5'Flank	NM_005231	NP_005222	Q14247	SRC8_HUMAN	cortactin isoform a	210	Cortactin 4.					cell cortex|cytoskeleton|lamellipodium|ruffle|soluble fraction	protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(2;4.34e-41)|LUSC - Lung squamous cell carcinoma(11;1.51e-13)|STAD - Stomach adenocarcinoma(18;0.0513)	Lung(977;0.0234)|LUSC - Lung squamous cell carcinoma(976;0.133)		ATAAGAGCGCCGTTGGCTTTG	0.448												
SHANK2	22941	broad.mit.edu	37	11	70333642	70333642	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:70333642G>A	uc001oqc.2	-	21	2834	c.2756C>T	c.(2755-2757)ACG>ATG	p.T919M	SHANK2_uc010rqn.1_Missense_Mutation_p.T331M|SHANK2_uc001opz.2_Missense_Mutation_p.T324M|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	540					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			AGGCTTAATCGTCCCGTAGAC	0.607												
NUMA1	4926	broad.mit.edu	37	11	71726677	71726677	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:71726677A>G	uc001orl.1	-	15	2044	c.1872T>C	c.(1870-1872)CTT>CTC	p.L624L	NUMA1_uc009ysw.1_Silent_p.L187L|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Silent_p.L624L|NUMA1_uc001orn.2_Silent_p.L187L|NUMA1_uc009ysx.1_Silent_p.L624L|NUMA1_uc001oro.1_Silent_p.L624L	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	624	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						TAGCCACCTGAAGTTGCTGCT	0.617			T	RARA	APL							
INPPL1	3636	broad.mit.edu	37	11	71943988	71943988	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:71943988C>T	uc001osf.2	+	16	2068	c.1921C>T	c.(1921-1923)CGG>TGG	p.R641W	INPPL1_uc001osg.2_Missense_Mutation_p.R399W	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	641					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						CAACCTGGAGCGGGAGAAGCA	0.562												
PDE2A	5138	broad.mit.edu	37	11	72288519	72288519	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:72288519G>A	uc010rrc.1	-	31	2978	c.2735C>T	c.(2734-2736)TCG>TTG	p.S912L	PDE2A_uc001oso.2_Missense_Mutation_p.S891L|PDE2A_uc010rra.1_Missense_Mutation_p.S905L|PDE2A_uc001osn.2_Missense_Mutation_p.S656L|PDE2A_uc010rrb.1_Missense_Mutation_p.S903L|PDE2A_uc010rrd.1_Missense_Mutation_p.S797L	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	912					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	GAAGTCCAGCGAGTTGTTACT	0.602												
ARAP1	116985	broad.mit.edu	37	11	72408664	72408664	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:72408664A>G	uc001osu.2	-	20	2957	c.2768T>C	c.(2767-2769)CTG>CCG	p.L923P	ARAP1_uc001osv.2_Missense_Mutation_p.L923P|ARAP1_uc001osr.2_Missense_Mutation_p.L683P|ARAP1_uc001oss.2_Missense_Mutation_p.L678P|ARAP1_uc009yth.2_Missense_Mutation_p.L617P|ARAP1_uc010rre.1_Missense_Mutation_p.L678P	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	923					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						CACCAGCACCAGCACCTGGTT	0.632												
PAAF1	80227	broad.mit.edu	37	11	73638354	73638354	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:73638354T>C	uc001ouk.1	+	12	1160	c.1126T>C	c.(1126-1128)TAC>CAC	p.Y376H	PAAF1_uc001oul.1_Missense_Mutation_p.Y359H|PAAF1_uc009ytx.1_RNA|PAAF1_uc001oum.1_Missense_Mutation_p.Y359H|PAAF1_uc001oun.1_RNA	NM_025155	NP_079431	Q9BRP4	PAAF1_HUMAN	proteasomal ATPase-associated factor 1	376	WD 5.				interspecies interaction between organisms	proteasome complex	protein binding			ovary(1)|skin(1)	2	Breast(11;7.42e-05)					GAAGCAGATCTACACATGCTG	0.458												
UCP3	7352	broad.mit.edu	37	11	73716934	73716934	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:73716934C>T	uc001our.2	-	4	737	c.382G>A	c.(382-384)GCC>ACC	p.A128T	UCP3_uc001ous.2_Missense_Mutation_p.A128T	NM_003356	NP_003347	P55916	UCP3_HUMAN	uncoupling protein 3 isoform UCP3L	128	Solcar 2.|Helical; Name=3; (Potential).				mitochondrial transport|respiratory electron transport chain|respiratory gaseous exchange	integral to membrane|mitochondrial inner membrane	binding			pancreas(1)	1	Breast(11;2.08e-05)					ACCGCCATGGCTCCTGTGGTG	0.607												
C2CD3	26005	broad.mit.edu	37	11	73824826	73824826	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:73824826T>C	uc001ouu.2	-	11	2069	c.1842A>G	c.(1840-1842)GGA>GGG	p.G614G	C2CD3_uc001ouv.2_Silent_p.G614G	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	614						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					GTCTCTTACTTCCATCTGTAA	0.363												
XRRA1	143570	broad.mit.edu	37	11	74554950	74554950	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:74554950C>A	uc009yub.2	-	18	2406	c.2074G>T	c.(2074-2076)GAC>TAC	p.D692Y	XRRA1_uc001ovm.2_Intron|XRRA1_uc001ovn.2_Missense_Mutation_p.D315Y|XRRA1_uc001ovo.2_Missense_Mutation_p.D300Y|XRRA1_uc001ovq.3_Intron|XRRA1_uc001ovp.3_Missense_Mutation_p.D417Y|XRRA1_uc001ovr.2_Missense_Mutation_p.D315Y|XRRA1_uc001ovs.1_3'UTR	NM_182969	NP_892014	Q6P2D8	XRRA1_HUMAN	X-ray radiation resistance associated 1	692					response to X-ray	cytoplasm|nucleus				central_nervous_system(1)	1						ATGAAGATGTCATCCAGAAGT	0.557												
SLCO2B1	11309	broad.mit.edu	37	11	74911354	74911354	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:74911354T>C	uc001owb.2	+	11	2072	c.1685T>C	c.(1684-1686)GTG>GCG	p.V562A	SLCO2B1_uc010rrq.1_Missense_Mutation_p.V307A|SLCO2B1_uc010rrr.1_Missense_Mutation_p.V418A|SLCO2B1_uc010rrs.1_Missense_Mutation_p.V446A|SLCO2B1_uc001owc.2_Missense_Mutation_p.V335A|SLCO2B1_uc001owd.2_Missense_Mutation_p.V540A	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	562	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	CATCTGGTGGTGCCCTTCCTG	0.632												
ACER3	55331	broad.mit.edu	37	11	76730809	76730809	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:76730809C>T	uc009yum.1	+	10	843	c.739C>T	c.(739-741)CCA>TCA	p.P247S	ACER3_uc001oxu.2_RNA|ACER3_uc009yun.1_Missense_Mutation_p.P205S|ACER3_uc009yuo.1_Missense_Mutation_p.P152S|ACER3_uc010rsh.1_Missense_Mutation_p.P210S|ACER3_uc010rsi.1_Missense_Mutation_p.P152S|ACER3_uc010rsj.1_Missense_Mutation_p.P152S	NM_018367	NP_060837	Q9NUN7	ACER3_HUMAN	phytoceramidase, alkaline	247					ceramide metabolic process|phytosphingosine biosynthetic process|positive regulation of cell proliferation|sphingosine biosynthetic process	integral to endoplasmic reticulum membrane|integral to Golgi membrane	phytoceramidase activity				0						GAGATATAGGCCAAAAGTGAA	0.403												
KCTD21	283219	broad.mit.edu	37	11	77884849	77884849	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:77884849T>C	uc001ozb.2	-	2	827	c.752A>G	c.(751-753)AAT>AGT	p.N251S		NM_001029859	NP_001025030	Q4G0X4	KCD21_HUMAN	potassium channel tetramerisation domain	251						voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.46e-24)			AATAATCTTATTGTTCATAAA	0.478												
USP35	57558	broad.mit.edu	37	11	77907363	77907363	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:77907363C>T	uc009yva.1	+	2	318	c.72C>T	c.(70-72)CGC>CGT	p.R24R	USP35_uc001oze.2_Intron|USP35_uc001ozc.2_Intron|USP35_uc010rsp.1_Intron|USP35_uc001ozd.2_5'UTR|USP35_uc001ozf.2_5'Flank	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35	24					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			TGGTTCGGCGCGTGCTGGAGG	0.726												
ODZ4	26011	broad.mit.edu	37	11	78369544	78369544	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:78369544T>C	uc001ozl.3	-	34	8332	c.7869A>G	c.(7867-7869)GGA>GGG	p.G2623G	ODZ4_uc001ozk.3_Silent_p.G848G|ODZ4_uc009yvb.1_Intron	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2623	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CTTCTGAAGGTCCTGGTTTCA	0.547												
ODZ4	26011	broad.mit.edu	37	11	78383286	78383286	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:78383286C>T	uc001ozl.3	-	31	6048	c.5585G>A	c.(5584-5586)CGG>CAG	p.R1862Q	ODZ4_uc001ozk.3_Missense_Mutation_p.R87Q|ODZ4_uc009yvb.1_Missense_Mutation_p.R446Q	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1862	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GTACAGAATCCGAAGGGTGAA	0.557												
DLG2	1740	broad.mit.edu	37	11	83641391	83641391	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:83641391T>C	uc001paj.2	-	10	1464	c.1161A>G	c.(1159-1161)CTA>CTG	p.L387L	DLG2_uc001pai.2_Intron|DLG2_uc010rsy.1_Silent_p.L354L|DLG2_uc010rsz.1_Silent_p.L387L|DLG2_uc010rta.1_Silent_p.L387L|DLG2_uc001pak.2_Silent_p.L492L|DLG2_uc010rtb.1_Silent_p.L354L|DLG2_uc001pal.1_Silent_p.L387L|DLG2_uc001pam.1_Silent_p.L426L	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	387						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CAGAGTCAGGTAGCAGGCCTA	0.512												
DLG2	1740	broad.mit.edu	37	11	83810087	83810087	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:83810087T>A	uc001paj.2	-	5	616	c.313A>T	c.(313-315)AAT>TAT	p.N105Y	DLG2_uc001pai.2_Missense_Mutation_p.N54Y|DLG2_uc010rsy.1_Missense_Mutation_p.N72Y|DLG2_uc010rsz.1_Missense_Mutation_p.N105Y|DLG2_uc010rta.1_Missense_Mutation_p.N105Y|DLG2_uc001pak.2_Missense_Mutation_p.N210Y|DLG2_uc010rtb.1_Missense_Mutation_p.N72Y|DLG2_uc001pal.1_Missense_Mutation_p.N105Y|DLG2_uc001pam.1_Missense_Mutation_p.N144Y	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	105	PDZ 1.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				AGGCCAGAATTCCCCTATAGA	0.418												
PRSS23	11098	broad.mit.edu	37	11	86519334	86519334	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:86519334A>G	uc001pcb.2	+	2	865	c.649A>G	c.(649-651)ATG>GTG	p.M217V	PRSS23_uc001pcc.1_Intron|PRSS23_uc010rts.1_Missense_Mutation_p.M185V	NM_007173	NP_009104	O95084	PRS23_HUMAN	protease, serine, 23 precursor	217					proteolysis	extracellular region|nucleus	serine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				GCCCGAGCAGATGAAATTTCA	0.522												
TMEM135	65084	broad.mit.edu	37	11	87029214	87029214	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:87029214T>C	uc001pch.2	+	13	1136	c.1113T>C	c.(1111-1113)GTT>GTC	p.V371V	TMEM135_uc010rtt.1_Silent_p.V232V|TMEM135_uc001pci.2_Silent_p.V349V	NM_022918	NP_075069	Q86UB9	TM135_HUMAN	transmembrane protein 135	371						integral to membrane					0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				CAGGGAAGGTTCCCTATTTTC	0.343												
GRM5	2915	broad.mit.edu	37	11	88337911	88337911	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:88337911C>T	uc001pcq.2	-	4	1569	c.1369G>A	c.(1369-1371)GAT>AAT	p.D457N	GRM5_uc009yvm.2_Missense_Mutation_p.D457N	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	457	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	CCATTCTCATCGAATAGGATC	0.433												
NOX4	50507	broad.mit.edu	37	11	89224368	89224368	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:89224368T>C	uc001pct.2	-	1	286	c.47A>G	c.(46-48)CAC>CGC	p.H16R	NOX4_uc009yvr.2_5'Flank|NOX4_uc001pcu.2_5'UTR|NOX4_uc001pcw.2_Missense_Mutation_p.H16R|NOX4_uc001pcx.2_Missense_Mutation_p.H16R|NOX4_uc001pcv.2_Missense_Mutation_p.H16R|NOX4_uc009yvo.2_RNA|NOX4_uc010rtu.1_5'UTR|NOX4_uc009yvp.2_Missense_Mutation_p.H16R|NOX4_uc010rtv.1_Intron|NOX4_uc009yvq.2_Intron|NOX4_uc009yvs.1_RNA|NOX4_uc001pcy.2_RNA	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	16	Cytoplasmic (Potential).				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				CAGGCAGAGGTGTTTAACCCC	0.642												
NAALAD2	10003	broad.mit.edu	37	11	89880585	89880585	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:89880585A>G	uc001pdf.3	+	3	391	c.282A>G	c.(280-282)GGA>GGG	p.G94G	NAALAD2_uc009yvx.2_Silent_p.G94G|NAALAD2_uc009yvy.2_Silent_p.G94G|NAALAD2_uc001pdd.2_Silent_p.G94G|NAALAD2_uc001pde.2_Silent_p.G94G	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	94	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				AGAAATTTGGACTAGATTCAG	0.373												
CHORDC1	26973	broad.mit.edu	37	11	89947184	89947184	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:89947184A>G	uc001pdg.2	-	4	739	c.329_splice	c.e4+1	p.S110_splice	CHORDC1_uc009yvz.2_Splice_Site_p.S91_splice	NM_012124	NP_036256	Q9UHD1	CHRD1_HUMAN	cysteine and histidine-rich domain-containing						chaperone-mediated protein folding|regulation of response to stress|response to stress		Hsp90 protein binding|identical protein binding				0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.00915)				TATAAAGTATACCTTGGTCTT	0.353												
FAT3	120114	broad.mit.edu	37	11	92495039	92495039	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:92495039T>C	uc001pdj.3	+	4	3704	c.3687T>C	c.(3685-3687)GGT>GGC	p.G1229G		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1229	Cadherin 11.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGACAGATGGTGGTCCCTCTC	0.423										TCGA Ovarian(4;0.039)		
FAT3	120114	broad.mit.edu	37	11	92531033	92531033	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:92531033G>A	uc001pdj.3	+	9	4871	c.4854G>A	c.(4852-4854)CCG>CCA	p.P1618P		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1618	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AGATCGAACCGGTCCTAGGCA	0.423										TCGA Ovarian(4;0.039)		
FAT3	120114	broad.mit.edu	37	11	92532943	92532943	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:92532943A>G	uc001pdj.3	+	9	6781	c.6764A>G	c.(6763-6765)AAG>AGG	p.K2255R		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2255	Cadherin 20.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCTGCTTACAAGCTGACAATA	0.428										TCGA Ovarian(4;0.039)		
FAT3	120114	broad.mit.edu	37	11	92538325	92538325	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:92538325A>G	uc001pdj.3	+	10	8920	c.8903A>G	c.(8902-8904)AAC>AGC	p.N2968S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2968	Cadherin 27.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCAGGAGGAAACCCTCGAGGA	0.438										TCGA Ovarian(4;0.039)		
SLC36A4	120103	broad.mit.edu	37	11	92901114	92901114	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:92901114A>G	uc001pdn.2	-	7	861	c.764T>C	c.(763-765)GTC>GCC	p.V255A	SLC36A4_uc001pdm.2_Missense_Mutation_p.V120A	NM_152313	NP_689526	Q6YBV0	S36A4_HUMAN	solute carrier family 36 (proton/amino acid	255					L-alanine transport|proline transport|tryptophan transport	integral to membrane	symporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				ACTTACCCTGACAACATACTG	0.254												
ENDOD1	23052	broad.mit.edu	37	11	94862578	94862578	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:94862578C>T	uc001pfh.2	+	2	1413	c.1338C>T	c.(1336-1338)GGC>GGT	p.G446G		NM_015036	NP_055851	O94919	ENDD1_HUMAN	endonuclease domain containing 1 precursor	446						extracellular region	endonuclease activity|metal ion binding|nucleic acid binding				0		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.00824)				ACACCATGGGCGCTATTCCAA	0.532												
SESN3	143686	broad.mit.edu	37	11	94911072	94911072	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:94911072T>C	uc001pfk.1	-	8	1280	c.1058A>G	c.(1057-1059)GAC>GGC	p.D353G	SESN3_uc010rug.1_Missense_Mutation_p.D214G	NM_144665	NP_653266	P58005	SESN3_HUMAN	sestrin 3	353					cell cycle arrest	nucleus					0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)		BRCA - Breast invasive adenocarcinoma(274;0.234)		CCAGGTATAGTCCTAAAAGAA	0.333												
CEP57	9702	broad.mit.edu	37	11	95562484	95562484	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:95562484T>A	uc001pfp.1	+	10	1482	c.1261T>A	c.(1261-1263)TAC>AAC	p.Y421N	CEP57_uc010ruh.1_Missense_Mutation_p.Y412N|CEP57_uc010rui.1_Missense_Mutation_p.Y395N|CEP57_uc009ywn.1_Missense_Mutation_p.Y269N|CEP57_uc001pfq.1_Missense_Mutation_p.Y395N|CEP57_uc001pfr.1_Missense_Mutation_p.Y269N	NM_014679	NP_055494	Q86XR8	CEP57_HUMAN	translokin	421	Mediates interaction with microtubules (By similarity).|Potential.				fibroblast growth factor receptor signaling pathway|G2/M transition of mitotic cell cycle|protein import into nucleus, translocation|spermatid development	centrosome|cytosol|Golgi apparatus|microtubule|nucleus	fibroblast growth factor binding|protein homodimerization activity			ovary(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				AGTTCGAAAATACCAAGCCCA	0.358									Mosaic_Variegated_Aneuploidy_Syndrome			
MAML2	84441	broad.mit.edu	37	11	95712489	95712489	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:95712489T>C	uc001pfw.1	-	5	4379	c.3094A>G	c.(3094-3096)ATG>GTG	p.M1032V		NM_032427	NP_115803	Q8IZL2	MAML2_HUMAN	mastermind-like 2	1032					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC1/MAML2(516)|CRTC3/MAML2(26)	salivary_gland(500)|lung(36)|thyroid(4)|breast(3)|skin(2)|ovary(1)	546		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				GTTTGGCTCATTTGGTTCATG	0.493			T	MECT1|CRTC3	salivary gland mucoepidermoid							
MAML2	84441	broad.mit.edu	37	11	95826382	95826382	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:95826382C>G	uc001pfw.1	-	2	2098	c.813G>C	c.(811-813)GAG>GAC	p.E271D		NM_032427	NP_115803	Q8IZL2	MAML2_HUMAN	mastermind-like 2	271					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC1/MAML2(516)|CRTC3/MAML2(26)	salivary_gland(500)|lung(36)|thyroid(4)|breast(3)|skin(2)|ovary(1)	546		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				AAGACAGAGTCTCTCCTGGCT	0.483			T	MECT1|CRTC3	salivary gland mucoepidermoid							
CNTN5	53942	broad.mit.edu	37	11	100221600	100221600	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:100221600A>G	uc001pga.2	+	24	3537	c.3198A>G	c.(3196-3198)TCA>TCG	p.S1066S	CNTN5_uc001pgb.2_Silent_p.S992S|CNTN5_uc010ruk.1_Silent_p.S337S	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	1066					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CATCATATTCAGGTAAGTTTT	0.378												
KIAA1377	57562	broad.mit.edu	37	11	101815143	101815143	+	Splice_Site	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:101815143T>A	uc001pgm.2	+	3	664	c.394_splice	c.e3+2	p.V132_splice	KIAA1377_uc001pgn.2_Splice_Site_p.V88_splice|KIAA1377_uc009yxa.1_Splice_Site	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562								protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		GGAAAGCAGGTGCCTTAATTT	0.343												
MMP10	4319	broad.mit.edu	37	11	102650475	102650475	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:102650475T>C	uc001phg.1	-	2	129	c.107A>G	c.(106-108)CAA>CGA	p.Q36R		NM_002425	NP_002416	P09238	MMP10_HUMAN	matrix metalloproteinase 10 preproprotein	36					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			kidney(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_epithelial(12;0.00961)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0303)|Lung(13;0.0828)|all cancers(10;0.116)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0145)		TTCTAGGTATTGCTAATGGAA	0.303												
DYNC2H1	79659	broad.mit.edu	37	11	103068666	103068666	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:103068666T>C	uc001pho.2	+	48	7857	c.7713T>C	c.(7711-7713)AGT>AGC	p.S2571S	DYNC2H1_uc001phn.1_Silent_p.S2571S|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2571					cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		CCACAGATAGTTTCTACGTTA	0.363												
DDI1	414301	broad.mit.edu	37	11	103907841	103907841	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:103907841T>C	uc001phr.2	+	1	534	c.291T>C	c.(289-291)AGT>AGC	p.S97S	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	97					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		TAGACTTCAGTGGCATTGCGG	0.637												
CARD16	114769	broad.mit.edu	37	11	104915212	104915212	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:104915212C>T	uc001pip.1	-	2	208	c.181G>A	c.(181-183)GTT>ATT	p.V61I	CASP1_uc010rve.1_Intron|CASP1_uc010rvf.1_Intron|CASP1_uc010rvg.1_Intron|CASP1_uc010rvh.1_Intron|CASP1_uc010rvi.1_Intron|CARD16_uc001pio.1_Missense_Mutation_p.V61I	NM_001017534	NP_001017534	Q5EG05	CAR16_HUMAN	caspase-1 dominant-negative inhibitor pseudo-ICE	61	CARD.				regulation of apoptosis	intracellular	cysteine-type endopeptidase inhibitor activity			skin(1)	1						TTCGGAATAACGGAGTCAATC	0.453												
CARD16	114769	broad.mit.edu	37	11	104915354	104915354	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:104915354A>G	uc001pip.1	-	2	66	c.39T>C	c.(37-39)TTT>TTC	p.F13F	CASP1_uc010rve.1_Intron|CASP1_uc010rvf.1_Intron|CASP1_uc010rvg.1_Intron|CASP1_uc010rvh.1_Intron|CASP1_uc010rvi.1_Intron|CARD16_uc001pio.1_Silent_p.F13F	NM_001017534	NP_001017534	Q5EG05	CAR16_HUMAN	caspase-1 dominant-negative inhibitor pseudo-ICE	13	CARD.				regulation of apoptosis	intracellular	cysteine-type endopeptidase inhibitor activity			skin(1)	1						TGGAATGGATAAACAGCTTTC	0.413												
GRIA4	2893	broad.mit.edu	37	11	105758275	105758275	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:105758275T>C	uc001pix.2	+	6	1149	c.703T>C	c.(703-705)TAC>CAC	p.Y235H	GRIA4_uc001piu.1_Missense_Mutation_p.Y235H|GRIA4_uc001piw.2_Missense_Mutation_p.Y235H|GRIA4_uc009yxk.1_Missense_Mutation_p.Y235H	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	235	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	TGTTAAAGGCTACCATTATAT	0.254												
GRIA4	2893	broad.mit.edu	37	11	105776013	105776013	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:105776013A>G	uc001pix.2	+	9	1590	c.1144A>G	c.(1144-1146)ACA>GCA	p.T382A	GRIA4_uc001piu.1_Missense_Mutation_p.T382A|GRIA4_uc001piw.2_Missense_Mutation_p.T382A|GRIA4_uc009yxk.1_Missense_Mutation_p.T382A	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	382	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	GCTGAAAAGCACAGGACCTAG	0.393												
GUCY1A2	2977	broad.mit.edu	37	11	106810451	106810451	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:106810451G>A	uc001pjg.1	-	4	1331	c.941C>T	c.(940-942)GCG>GTG	p.A314V	GUCY1A2_uc010rvo.1_Missense_Mutation_p.A314V|GUCY1A2_uc009yxn.1_Missense_Mutation_p.A314V	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	314					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		TCTGAGGTCCGCAGGAACTTG	0.448												
CWF19L2	143884	broad.mit.edu	37	11	107299652	107299652	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:107299652A>G	uc010rvp.1	-	8	1336	c.1306T>C	c.(1306-1308)TCG>CCG	p.S436P	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_RNA	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	436							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		CTGGTTTCCGATGGCTTTTGA	0.403												
ELMOD1	55531	broad.mit.edu	37	11	107535915	107535915	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:107535915A>G	uc010rvs.1	+	12	1401	c.997A>G	c.(997-999)AAC>GAC	p.N333D	ELMOD1_uc001pjm.2_Missense_Mutation_p.N325D|ELMOD1_uc010rvt.1_Missense_Mutation_p.N327D	NM_018712	NP_061182	Q8N336	ELMD1_HUMAN	ELMO/CED-12 domain containing 1 isoform 1	333					phagocytosis	cytoskeleton	GTPase activator activity				0		Melanoma(852;0.000288)|Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00301)|all_epithelial(67;0.00304)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Epithelial(105;0.00027)|all cancers(92;0.00481)		AGGTTTAATCAACATGTAGTT	0.493												
CUL5	8065	broad.mit.edu	37	11	107965548	107965548	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:107965548T>C	uc001pjv.2	+	15	2244	c.1577T>C	c.(1576-1578)GTT>GCT	p.V526A	CUL5_uc001pju.2_RNA	NM_003478	NP_003469	Q93034	CUL5_HUMAN	Vasopressin-activated calcium-mobilizing	526					cell cycle arrest|cell proliferation|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process|viral reproduction	cullin-RING ubiquitin ligase complex|cytosol	calcium channel activity|receptor activity|ubiquitin protein ligase binding			ovary(1)	1		all_cancers(61;7.09e-10)|all_epithelial(67;2.97e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|Melanoma(852;4.48e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;3.58e-05)|Epithelial(105;4.68e-05)|all cancers(92;0.00122)|OV - Ovarian serous cystadenocarcinoma(223;0.217)		GCTGATTCAGTTAATATAAAA	0.333												
ACAT1	38	broad.mit.edu	37	11	108017014	108017014	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:108017014T>C	uc001pjy.2	+	11	1167	c.1091T>C	c.(1090-1092)ATT>ACT	p.I364T		NM_000019	NP_000010	P24752	THIL_HUMAN	acetyl-Coenzyme A acetyltransferase 1 precursor	364					acetoacetic acid biosynthetic process|branched chain family amino acid catabolic process|ketone body biosynthetic process|ketone body catabolic process	mitochondrial matrix	acetyl-CoA C-acetyltransferase activity|metal ion binding			ovary(3)	3		all_cancers(61;6.41e-10)|all_epithelial(67;2.83e-06)|Melanoma(852;1.46e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;2.96e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.00108)|OV - Ovarian serous cystadenocarcinoma(223;0.192)	Sulfasalazine(DB00795)	CTAGCAAACATTAAAATGTTG	0.333												
ATM	472	broad.mit.edu	37	11	108159816	108159816	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:108159816C>T	uc001pkb.1	+	28	4607	c.4222C>T	c.(4222-4224)CTT>TTT	p.L1408F	ATM_uc009yxr.1_Missense_Mutation_p.L1408F|ATM_uc001pkd.3_Missense_Mutation_p.L60F|ATM_uc001pke.1_Missense_Mutation_p.L60F|ATM_uc010rvw.1_Missense_Mutation_p.L60F|ATM_uc001pkf.2_Missense_Mutation_p.L60F	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	1408					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TTTAGAAATTCTTTCCAAAAG	0.303			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)		
ATM	472	broad.mit.edu	37	11	108202676	108202676	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:108202676A>G	uc001pkb.1	+	52	8085	c.7700A>G	c.(7699-7701)AAC>AGC	p.N2567S	ATM_uc009yxr.1_Missense_Mutation_p.N2567S|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.N1219S|ATM_uc001pkg.1_Missense_Mutation_p.N924S	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2567					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		GCAAATGCAAACAGAGATGAA	0.358			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)		
ATM	472	broad.mit.edu	37	11	108236086	108236086	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:108236086C>T	uc001pkb.1	+	63	9407	c.9022C>T	c.(9022-9024)CGT>TGT	p.R3008C	ATM_uc009yxr.1_Missense_Mutation_p.R3008C|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.R1660C	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	3008			R -> C (in AT, T-prolymphocytic leukemia and mantle cell lymphoma).|R -> H (in B-cell chronic lymphocytic leukemia).		cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding	p.R3008C(4)|p.R3008H(4)		haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		AGTAGCTGAACGTGTCTTAAT	0.413			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)		
EXPH5	23086	broad.mit.edu	37	11	108382343	108382343	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:108382343T>C	uc001pkk.2	-	6	4002	c.3891A>G	c.(3889-3891)AAA>AAG	p.K1297K	EXPH5_uc010rvy.1_Silent_p.K1109K|EXPH5_uc010rvz.1_Silent_p.K1141K|EXPH5_uc010rwa.1_Silent_p.K1221K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1297					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		AATAATTCTGTTTGTCTTTTT	0.373												
EXPH5	23086	broad.mit.edu	37	11	108389088	108389088	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:108389088A>G	uc001pkk.2	-	5	616	c.505T>C	c.(505-507)TAC>CAC	p.Y169H	EXPH5_uc010rvy.1_5'UTR|EXPH5_uc010rvz.1_Missense_Mutation_p.Y13H|EXPH5_uc010rwa.1_Missense_Mutation_p.Y93H	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	169					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		GGTGAATTGTATATTTTTGCC	0.443												
PPP2R1B	5519	broad.mit.edu	37	11	111612842	111612842	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:111612842A>G	uc001plx.1	-	14	1808	c.1724T>C	c.(1723-1725)GTA>GCA	p.V575A	PPP2R1B_uc001plw.1_Missense_Mutation_p.V575A|PPP2R1B_uc010rwi.1_Missense_Mutation_p.V511A|PPP2R1B_uc010rwj.1_Missense_Mutation_p.V414A|PPP2R1B_uc010rwk.1_Missense_Mutation_p.V530A|PPP2R1B_uc010rwl.1_Missense_Mutation_p.V448A	NM_002716	NP_002707	P30154	2AAB_HUMAN	beta isoform of regulatory subunit A, protein	575	HEAT 15.						protein binding				0		all_cancers(61;2.34e-15)|all_epithelial(67;1.72e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|Epithelial(105;2.36e-06)|all cancers(92;3.78e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0761)		CTTCTGTAGTACTGGCTTCAC	0.383												
PPP2R1B	5519	broad.mit.edu	37	11	111625257	111625257	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:111625257G>C	uc001plx.1	-	8	1079	c.995C>G	c.(994-996)ACC>AGC	p.T332S	PPP2R1B_uc001plw.1_Missense_Mutation_p.T332S|PPP2R1B_uc010rwi.1_Missense_Mutation_p.T268S|PPP2R1B_uc010rwj.1_Missense_Mutation_p.T171S|PPP2R1B_uc010rwk.1_Missense_Mutation_p.T332S|PPP2R1B_uc010rwl.1_Missense_Mutation_p.T205S	NM_002716	NP_002707	P30154	2AAB_HUMAN	beta isoform of regulatory subunit A, protein	332	HEAT 8.						protein binding				0		all_cancers(61;2.34e-15)|all_epithelial(67;1.72e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|Epithelial(105;2.36e-06)|all cancers(92;3.78e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0761)		CATAATTATGGTCTCTCTATC	0.313												
C11orf57	55216	broad.mit.edu	37	11	111953431	111953431	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:111953431G>A	uc001pmr.3	+	6	1295	c.614G>A	c.(613-615)CGC>CAC	p.R205H	C11orf57_uc001pmw.3_Missense_Mutation_p.R206H|C11orf57_uc001pmt.3_Missense_Mutation_p.R206H|C11orf57_uc001pmv.3_Missense_Mutation_p.R205H|C11orf57_uc001pms.3_Missense_Mutation_p.R177H	NM_001082970	NP_001076439	Q6ZUT1	CK057_HUMAN	hypothetical protein LOC55216 isoform b	205	Lys-rich.									breast(2)|ovary(1)	3		all_cancers(61;9.8e-15)|all_epithelial(67;6.57e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;3.6e-07)|BRCA - Breast invasive adenocarcinoma(274;6.17e-07)|all cancers(92;7.01e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0521)		CCACATAAACGCAAGAAAAAA	0.408												
USP28	57646	broad.mit.edu	37	11	113672318	113672318	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:113672318A>G	uc001poh.2	-	24	2978	c.2945T>C	c.(2944-2946)CTG>CCG	p.L982P	USP28_uc001pog.2_Missense_Mutation_p.L658P|USP28_uc010rwy.1_Missense_Mutation_p.L825P|USP28_uc001poi.2_Missense_Mutation_p.L305P	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	982					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		GGGGATGATCAGTTCATTCAT	0.408												
USP28	57646	broad.mit.edu	37	11	113684655	113684655	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:113684655A>G	uc001poh.2	-	15	1728	c.1695T>C	c.(1693-1695)AGT>AGC	p.S565S	USP28_uc001pog.2_Silent_p.S273S|USP28_uc010rwy.1_Silent_p.S440S|USP28_uc001poi.2_Intron|USP28_uc001poj.3_Silent_p.S565S	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	565					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		TCTGAGTAGTACTTGCAATAC	0.358												
USP28	57646	broad.mit.edu	37	11	113694409	113694409	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:113694409T>A	uc001poh.2	-	12	1234	c.1201A>T	c.(1201-1203)AGC>TGC	p.S401C	USP28_uc001pog.2_Missense_Mutation_p.S109C|USP28_uc010rwy.1_Missense_Mutation_p.S276C|USP28_uc001poi.2_5'UTR|USP28_uc001poj.3_Missense_Mutation_p.S401C	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	401					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		AGCTCCTTGCTCCTGTACATG	0.259												
APOA1	335	broad.mit.edu	37	11	116708093	116708093	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:116708093G>A	uc001ppu.1	-	2	90	c.11C>T	c.(10-12)GCG>GTG	p.A4V	APOA1_uc001ppv.1_Missense_Mutation_p.A4V	NM_000039	NP_000030	P02647	APOA1_HUMAN	apolipoprotein A-I preproprotein	4					Cdc42 protein signal transduction|cholesterol efflux|cholesterol homeostasis|cholesterol import|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|negative regulation of cytokine secretion involved in immune response|negative regulation of interleukin-1 beta secretion|negative regulation of very-low-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|phospholipid efflux|platelet activation|platelet degranulation|positive regulation of cholesterol esterification|positive regulation of hydrolase activity|protein stabilization|reverse cholesterol transport	endocytic vesicle|endoplasmic reticulum lumen|plasma membrane|spherical high-density lipoprotein particle|stored secretory granule|very-low-density lipoprotein particle	apolipoprotein A-I receptor binding|beta-amyloid binding|cholesterol binding|cholesterol transporter activity|enzyme binding|high-density lipoprotein particle receptor binding|identical protein binding|phosphatidylcholine-sterol O-acyltransferase activator activity|phospholipid binding				0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.59e-05)|all cancers(92;0.000162)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		GGTCAGCACCGCAGCTTTCAT	0.642												
SIK3	23387	broad.mit.edu	37	11	116717117	116717117	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:116717117C>T	uc001ppy.2	-	23	3823	c.3787G>A	c.(3787-3789)GTG>ATG	p.V1263M	SIK3_uc001ppz.2_Missense_Mutation_p.V1102M|SIK3_uc001pqa.2_Missense_Mutation_p.V1203M|SIK3_uc001ppw.2_Missense_Mutation_p.V620M|SIK3_uc001ppx.2_Missense_Mutation_p.V641M	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	1263						cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						TCTTGTTACACGCCTGCCTGC	0.537												
SIK3	23387	broad.mit.edu	37	11	116719861	116719861	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:116719861G>A	uc001ppy.2	-	21	3512	c.3476C>T	c.(3475-3477)ACG>ATG	p.T1159M	SIK3_uc001ppz.2_Missense_Mutation_p.T998M|SIK3_uc001pqa.2_Missense_Mutation_p.T1099M|SIK3_uc001ppw.2_Missense_Mutation_p.T516M|SIK3_uc001ppx.2_Missense_Mutation_p.T537M	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	1159						cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						GTTCTGGATCGTGTGGTGTCT	0.602												
TAGLN	6876	broad.mit.edu	37	11	117073798	117073798	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:117073798C>T	uc001pqm.2	+	2	190	c.69C>T	c.(67-69)GAC>GAT	p.D23D	uc001pqk.1_5'Flank|TAGLN_uc001pql.1_Intron|TAGLN_uc001pqn.2_Silent_p.D23D|TAGLN_uc001pqo.2_Silent_p.D23D|TAGLN_uc001pqp.2_Silent_p.D23D|uc001pqq.1_5'Flank	NM_003186	NP_003177	Q01995	TAGL_HUMAN	transgelin	23					muscle organ development	cytoplasm	actin binding				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|Epithelial(105;5.49e-05)|all cancers(92;0.000435)		AGAAGTATGACGAGGAGCTGG	0.597												
PCSK7	9159	broad.mit.edu	37	11	117098958	117098958	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:117098958T>C	uc001pqr.2	-	4	778	c.577A>G	c.(577-579)ACC>GCC	p.T193A		NM_004716	NP_004707	Q16549	PCSK7_HUMAN	proprotein convertase subtilisin/kexin type 7	193	Catalytic.|Extracellular (Potential).				peptide hormone processing	integral to Golgi membrane	serine-type endopeptidase activity				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.72e-06)|Epithelial(105;6.71e-05)|all cancers(92;0.000537)		TCCTGGATGGTGTGTTCCACT	0.592			T	IGH@	MLCLS							
PCSK7	9159	broad.mit.edu	37	11	117100293	117100293	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:117100293C>T	uc001pqr.2	-	3	469	c.268G>A	c.(268-270)GGA>AGA	p.G90R		NM_004716	NP_004707	Q16549	PCSK7_HUMAN	proprotein convertase subtilisin/kexin type 7	90					peptide hormone processing	integral to Golgi membrane	serine-type endopeptidase activity				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.72e-06)|Epithelial(105;6.71e-05)|all cancers(92;0.000537)		TGAAGCTCTCCGATGCGTCCA	0.657			T	IGH@	MLCLS							
BACE1	23621	broad.mit.edu	37	11	117165972	117165972	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:117165972T>C	uc001pqz.2	-	3	903	c.442A>G	c.(442-444)ATC>GTC	p.I148V	BACE1_uc001pqw.2_Missense_Mutation_p.I148V|BACE1_uc001pqx.2_Intron|BACE1_uc001pqy.2_Intron|BACE1_uc001pra.1_Intron|BACE1_uc010rxg.1_Missense_Mutation_p.I48V|BACE1_uc010rxh.1_Missense_Mutation_p.I48V	NM_012104	NP_036236	P56817	BACE1_HUMAN	beta-site APP-cleaving enzyme 1 isoform A	148	Extracellular (Potential).				beta-amyloid metabolic process|membrane protein ectodomain proteolysis	cell surface|cytoplasmic vesicle membrane|endoplasmic reticulum|endosome|integral to plasma membrane|trans-Golgi network	aspartic-type endopeptidase activity|beta-aspartyl-peptidase activity|protein binding			ovary(1)	1	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000563)|all cancers(92;0.0032)		CCATGGGGGATGCTTACCAGG	0.587												
BACE1	23621	broad.mit.edu	37	11	117186277	117186277	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:117186277T>C	uc001pqz.2	-	1	696	c.235A>G	c.(235-237)ATG>GTG	p.M79V	BACE1_uc001pqw.2_Missense_Mutation_p.M79V|BACE1_uc001pqx.2_Missense_Mutation_p.M79V|BACE1_uc001pqy.2_Missense_Mutation_p.M79V|BACE1_uc001pra.1_Missense_Mutation_p.M79V	NM_012104	NP_036236	P56817	BACE1_HUMAN	beta-site APP-cleaving enzyme 1 isoform A	79	Extracellular (Potential).				beta-amyloid metabolic process|membrane protein ectodomain proteolysis	cell surface|cytoplasmic vesicle membrane|endoplasmic reticulum|endosome|integral to plasma membrane|trans-Golgi network	aspartic-type endopeptidase activity|beta-aspartyl-peptidase activity|protein binding			ovary(1)	1	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000563)|all cancers(92;0.0032)		CCCACGGTCATCTCCACGTAG	0.667												
CEP164	22897	broad.mit.edu	37	11	117279701	117279701	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:117279701A>T	uc001prc.2	+	29	3852	c.3705A>T	c.(3703-3705)GAA>GAT	p.E1235D	CEP164_uc001prb.2_Missense_Mutation_p.E1238D|CEP164_uc001prf.2_Intron|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Missense_Mutation_p.E668D	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	1235					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		AAAGTTCTGAATCTTTTTCCC	0.577												
DSCAML1	57453	broad.mit.edu	37	11	117301513	117301513	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:117301513C>T	uc001prh.1	-	32	5793	c.5791G>A	c.(5791-5793)GCC>ACC	p.A1931T		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1871	Cytoplasmic (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GGTGGTGAGGCGGTAAAGCGG	0.612												
DSCAML1	57453	broad.mit.edu	37	11	117391895	117391895	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:117391895G>A	uc001prh.1	-	6	1345	c.1343C>T	c.(1342-1344)GCT>GTT	p.A448V	DSCAML1_uc001pri.1_Missense_Mutation_p.A252V	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	388	Extracellular (Potential).|Ig-like C2-type 4.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CTTGCGGGTAGCGAAGCACTG	0.662												
MPZL2	10205	broad.mit.edu	37	11	118133782	118133782	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:118133782T>C	uc001psn.2	-	2	230	c.89A>G	c.(88-90)TAT>TGT	p.Y30C	MPZL2_uc001pso.2_Missense_Mutation_p.Y30C|MPZL2_uc001psp.1_Missense_Mutation_p.Y30C	NM_005797	NP_005788	O60487	MPZL2_HUMAN	myelin protein zero-like 2 precursor	30	Extracellular (Potential).|Ig-like V-type.				anatomical structure morphogenesis|homophilic cell adhesion	cytoskeleton|integral to membrane				skin(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		CCGGGAGGTATAAATTTCCAC	0.468												
MLL	4297	broad.mit.edu	37	11	118359442	118359442	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:118359442T>C	uc001pta.2	+	11	4469	c.4446T>C	c.(4444-4446)TGT>TGC	p.C1482C	MLL_uc001ptb.2_Silent_p.C1482C|MLL_uc001pte.1_RNA	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1482	PHD-type 2.|PHD-type 1.				apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GCAAATTCTGTCACGTTTGTG	0.358			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL							
MLL	4297	broad.mit.edu	37	11	118362626	118362626	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:118362626T>C	uc001pta.2	+	15	5001	c.4978T>C	c.(4978-4980)TTG>CTG	p.L1660L	MLL_uc001ptb.2_Silent_p.L1663L|MLL_uc001pte.1_RNA	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1660					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		TACCAGCCATTTGCTACGCTA	0.458			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL							
MLL	4297	broad.mit.edu	37	11	118374582	118374582	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:118374582C>T	uc001pta.2	+	27	7989	c.7966C>T	c.(7966-7968)CGA>TGA	p.R2656*	MLL_uc001ptb.2_Nonsense_Mutation_p.R2659*	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2656					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		TGGGAAGAAGCGAGGCAAGAG	0.448			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL							
ARCN1	372	broad.mit.edu	37	11	118454616	118454616	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:118454616A>G	uc001ptq.2	+	4	701	c.540A>G	c.(538-540)GCA>GCG	p.A180A	ARCN1_uc009zah.2_Intron|ARCN1_uc010ryg.1_Silent_p.A92A|ARCN1_uc009zag.2_Silent_p.A221A	NM_001655	NP_001646	P48444	COPD_HUMAN	archain isoform 1	180					COPI coating of Golgi vesicle|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	clathrin adaptor complex|COPI vesicle coat|cytosol					0	all_hematologic(175;0.0349)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		GCAAAAAAGCACCAGGATTTG	0.483												
PHLDB1	23187	broad.mit.edu	37	11	118514810	118514810	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:118514810T>C	uc001ptr.1	+	16	3392	c.3039T>C	c.(3037-3039)AAT>AAC	p.N1013N	PHLDB1_uc001pts.2_Silent_p.N1013N|PHLDB1_uc001ptt.2_Silent_p.N966N|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_Silent_p.N813N|PHLDB1_uc001ptw.1_Silent_p.N368N|PHLDB1_uc009zai.1_Silent_p.N49N|PHLDB1_uc001ptx.1_Silent_p.N49N|PHLDB1_uc010ryi.1_Silent_p.N156N|PHLDB1_uc010ryj.1_Silent_p.N151N	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	1013											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		TCACCCAGAATGGCACGGGCA	0.622												
BCL9L	283149	broad.mit.edu	37	11	118772844	118772844	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:118772844T>C	uc001pug.2	-	6	2573	c.1608A>G	c.(1606-1608)GAA>GAG	p.E536E	BCL9L_uc009zal.2_Silent_p.E531E	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	536					negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		GCCCAATCTGTTCCTCTTTCC	0.627												
SLC37A4	2542	broad.mit.edu	37	11	118895642	118895642	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:118895642C>T	uc010rys.1	-	11	2025	c.1268G>A	c.(1267-1269)CGA>CAA	p.R423Q	SLC37A4_uc009zam.2_RNA|SLC37A4_uc009zan.2_RNA|SLC37A4_uc010ryr.1_Missense_Mutation_p.R445Q|SLC37A4_uc010ryt.1_Missense_Mutation_p.R350Q|SLC37A4_uc001pus.2_Missense_Mutation_p.R423Q	NM_001164277	NP_001157749	O43826	G6PT1_HUMAN	solute carrier family 37 (glucose-6-phosphate	423					glucose homeostasis|glucose metabolic process	endoplasmic reticulum membrane|integral to endoplasmic reticulum membrane|integral to membrane	glucose-6-phosphate transmembrane transporter activity|glucose-6-phosphate transmembrane transporter activity			large_intestine(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_neural(223;0.112)|all_hematologic(192;0.207)		BRCA - Breast invasive adenocarcinoma(274;7.58e-05)		CTTGGACACTCGGCCCATCTT	0.607									Glycogen_Storage_Disease_type_Ib			
NLRX1	79671	broad.mit.edu	37	11	119044607	119044607	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:119044607G>A	uc001pvu.2	+	5	864	c.649G>A	c.(649-651)GCC>ACC	p.A217T	NLRX1_uc010rzc.1_Missense_Mutation_p.A39T|NLRX1_uc001pvv.2_Missense_Mutation_p.A217T|NLRX1_uc001pvw.2_Missense_Mutation_p.A217T|NLRX1_uc001pvx.2_Missense_Mutation_p.A217T	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	217	Required for interaction with MAVS.|NACHT.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		CCAACTTGTGGCCCAGCGCTA	0.632												
NLRX1	79671	broad.mit.edu	37	11	119045201	119045201	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:119045201C>T	uc001pvu.2	+	6	1104	c.889C>T	c.(889-891)CGT>TGT	p.R297C	NLRX1_uc010rzc.1_Missense_Mutation_p.R119C|NLRX1_uc001pvv.2_Missense_Mutation_p.R297C|NLRX1_uc001pvw.2_Missense_Mutation_p.R297C|NLRX1_uc001pvx.2_Missense_Mutation_p.R297C	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	297	Required for interaction with MAVS.|NACHT.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		TGCCATTGGCCGTATCCCCAG	0.542												
PVRL1	5818	broad.mit.edu	37	11	119547833	119547833	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:119547833G>A	uc001pwv.2	-	4	1002	c.830C>T	c.(829-831)GCC>GTC	p.A277V	PVRL1_uc001pwu.1_Missense_Mutation_p.A277V|PVRL1_uc001pww.2_Missense_Mutation_p.A277V	NM_002855	NP_002846	Q15223	PVRL1_HUMAN	poliovirus receptor-related 1 isoform 1	277	Extracellular (Potential).|Ig-like C2-type 2.				adherens junction organization|cell junction assembly|entry of virus into host cell|heterophilic cell-cell adhesion|homophilic cell adhesion|immune response	cell-cell adherens junction|extracellular region|integral to membrane	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0		Breast(348;0.037)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.29e-05)		GTACTCAGTGGCTGGGGGGTT	0.567												
POU2F3	25833	broad.mit.edu	37	11	120175765	120175765	+	Silent	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:120175765A>T	uc001pxc.2	+	7	573	c.471A>T	c.(469-471)GGA>GGT	p.G157G	POU2F3_uc010rzk.1_Silent_p.G111G|POU2F3_uc010rzl.1_Silent_p.G87G|POU2F3_uc001pxe.1_5'Flank	NM_014352	NP_055167	Q9UKI9	PO2F3_HUMAN	POU transcription factor	157					negative regulation by host of viral transcription	cytoplasm	sequence-specific DNA binding			ovary(1)|skin(1)	2		Breast(109;0.0011)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;6.85e-06)		GGCTGCCAGGATCCTCTTTAG	0.507												
TECTA	7007	broad.mit.edu	37	11	120996338	120996338	+	Missense_Mutation	SNP	G	G	A	rs150927084		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:120996338G>A	uc010rzo.1	+	7	1531	c.1531G>A	c.(1531-1533)GAC>AAC	p.D511N		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	511	VWFD 1.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CACCCAGTGCGACGCTGCCAC	0.622												
CRTAM	56253	broad.mit.edu	37	11	122722513	122722513	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:122722513C>T	uc001pyj.2	+	3	306	c.306C>T	c.(304-306)AGC>AGT	p.S102S		NM_019604	NP_062550	O95727	CRTAM_HUMAN	class-I MHC-restricted T cell associated	102	Ig-like V-type.|Extracellular (Potential).				cell recognition|detection of tumor cell|positive regulation of cytokine secretion|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	integral to membrane|plasma membrane	receptor binding			ovary(1)	1		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.28e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		TACATTACAGCGACTCTGTAA	0.478												
SCN3B	55800	broad.mit.edu	37	11	123508962	123508962	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:123508962C>A	uc001pza.1	-	5	923	c.516G>T	c.(514-516)TGG>TGT	p.W172C	SCN3B_uc001pzb.1_Missense_Mutation_p.W172C	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	172	Helical; (Potential).				axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		CGATGAGCAGCCACAAGGTGA	0.433												
ZNF202	7753	broad.mit.edu	37	11	123597538	123597538	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:123597538T>C	uc001pzd.1	-	9	1514	c.1114A>G	c.(1114-1116)ACT>GCT	p.T372A	ZNF202_uc001pzc.1_Missense_Mutation_p.T148A|ZNF202_uc001pze.1_Missense_Mutation_p.T372A|ZNF202_uc001pzf.1_Missense_Mutation_p.T372A	NM_003455	NP_003446	O95125	ZN202_HUMAN	zinc finger protein 202	372					lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.03)		GAAATATTAGTACCAAATCTT	0.438												
TBRG1	84897	broad.mit.edu	37	11	124496881	124496881	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:124496881A>C	uc001qak.3	+	5	911	c.673A>C	c.(673-675)ATG>CTG	p.M225L	TBRG1_uc001qaj.3_Missense_Mutation_p.M74L|TBRG1_uc001qal.3_Missense_Mutation_p.M1L|TBRG1_uc001qam.3_RNA|TBRG1_uc009zbf.2_RNA|TBRG1_uc009zbg.2_Missense_Mutation_p.M74L|TBRG1_uc009zbh.2_Missense_Mutation_p.M1L	NM_032811	NP_116200	Q3YBR2	TBRG1_HUMAN	transforming growth factor beta regulator 1	225	FYR N-terminal.				cell cycle arrest|DNA replication|negative regulation of cell proliferation|nucleolus to nucleoplasm transport|protein stabilization	nucleus	DNA binding|protein binding				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0218)		ATATGCCAGCATGAAGTGCCC	0.443												
ROBO4	54538	broad.mit.edu	37	11	124757724	124757724	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:124757724G>A	uc001qbg.2	-	13	2101	c.1961C>T	c.(1960-1962)GCC>GTC	p.A654V	ROBO4_uc010sas.1_Missense_Mutation_p.A509V|ROBO4_uc001qbh.2_Missense_Mutation_p.A544V|ROBO4_uc001qbi.2_Missense_Mutation_p.A212V|ROBO4_uc010sat.1_Missense_Mutation_p.A212V	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	654					angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		GGAACTGTTGGCATGCTGCAG	0.552												
PKNOX2	63876	broad.mit.edu	37	11	125298986	125298986	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:125298986T>C	uc001qbu.2	+	11	1327	c.1013_splice	c.e11+2	p.W338_splice	PKNOX2_uc010saz.1_Splice_Site_p.W309_splice|PKNOX2_uc010sba.1_Splice_Site_p.W309_splice|PKNOX2_uc010sbb.1_Splice_Site_p.W274_splice|PKNOX2_uc001qbv.2_Splice_Site_p.W103_splice	NM_022062	NP_071345	Q96KN3	PKNX2_HUMAN	PBX/knotted 1 homeobox 2							nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(109;0.00234)|all_lung(97;0.0191)|Lung NSC(97;0.0196)|Medulloblastoma(222;0.0447)|all_neural(223;0.116)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.117)		AAACAACTGGTGAGTTTGCAT	0.577											OREG0021475	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
STT3A	3703	broad.mit.edu	37	11	125476321	125476321	+	Silent	SNP	C	C	T	rs1051714		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:125476321C>T	uc001qcd.2	+	8	851	c.741C>T	c.(739-741)GGC>GGT	p.G247G	STT3A_uc009zbm.2_Silent_p.G247G|STT3A_uc001qce.2_Silent_p.G247G|STT3A_uc010sbg.1_Silent_p.G155G|STT3A_uc009zbn.2_Silent_p.G21G	NM_152713	NP_689926	P46977	STT3A_HUMAN	integral membrane protein 1	247	Helical; (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity				0	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		ACTGCCTGGGCACTATACTTT	0.488												
CDON	50937	broad.mit.edu	37	11	125880279	125880279	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:125880279T>C	uc009zbw.2	-	8	1637	c.1509A>G	c.(1507-1509)GCA>GCG	p.A503A	CDON_uc001qdc.3_Silent_p.A503A|CDON_uc001qdd.3_RNA	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	503	Ig-like C2-type 5.|Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		CATGTTCATTTGCAGCTTCGC	0.433												
FAM118B	79607	broad.mit.edu	37	11	126110831	126110831	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:126110831T>C	uc001qdf.2	+	4	414	c.231T>C	c.(229-231)ATT>ATC	p.I77I	FAM118B_uc009zca.2_Silent_p.I81I|FAM118B_uc001qdg.2_Silent_p.I77I	NM_024556	NP_078832	Q9BPY3	F118B_HUMAN	hypothetical protein LOC79607	77											0	all_hematologic(175;0.145)	Breast(109;0.00156)|Lung NSC(97;0.00948)|all_lung(97;0.0101)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.15e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0784)		ATGCTGCCATTGATTTTGATC	0.458												
FOXRED1	55572	broad.mit.edu	37	11	126141443	126141443	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:126141443T>C	uc001qdi.2	+	2	244	c.197T>C	c.(196-198)GTG>GCG	p.V66A	SRPR_uc001qdh.2_5'Flank|SRPR_uc010sbm.1_5'Flank|FOXRED1_uc010sbn.1_Intron|FOXRED1_uc010sbo.1_Intron|FOXRED1_uc010sbp.1_Intron|FOXRED1_uc010sbq.1_5'UTR|FOXRED1_uc001qdj.2_5'UTR|FOXRED1_uc010sbr.1_Missense_Mutation_p.V52A|FOXRED1_uc001qdk.2_5'UTR	NM_017547	NP_060017	Q96CU9	FXRD1_HUMAN	FAD-dependent oxidoreductase domain containing	66	Helical; (Potential).					integral to membrane|mitochondrion	oxidoreductase activity|protein binding				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0729)		CACTCGGATGTGGTGATCGTG	0.552												
KIRREL3	84623	broad.mit.edu	37	11	126343330	126343330	+	Silent	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:126343330G>C	uc001qea.2	-	5	826	c.465C>G	c.(463-465)GGC>GGG	p.G155G	KIRREL3_uc001qeb.2_Silent_p.G155G|KIRREL3_uc001qec.1_Silent_p.G155G	NM_032531	NP_115920	Q8IZU9	KIRR3_HUMAN	kin of IRRE like 3 isoform 1	155	Ig-like C2-type 2.|Extracellular (Potential).				hemopoiesis	extracellular region|integral to membrane|plasma membrane	protein binding			ovary(3)	3	all_hematologic(175;0.145)	Lung NSC(97;0.0484)|all_lung(97;0.0522)|Medulloblastoma(222;0.0523)|Breast(109;0.0949)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;6.03e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.12)		TGATCACAGGGCCCCCCAGGA	0.667												
TP53AIP1	63970	broad.mit.edu	37	11	128805564	128805564	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:128805564T>A	uc001qey.2	-	4	507	c.297A>T	c.(295-297)ACA>ACT	p.T99T	TP53AIP1_uc001qex.2_3'UTR			Q9HCN2	TPIP1_HUMAN	RecName: Full=p53-regulated apoptosis-inducing protein 1;          Short=p53AIP1;	99					apoptosis	mitochondrion				lung(1)	1						CTCTAAGCACTGTGGCTCCAG	0.403												
TMEM45B	120224	broad.mit.edu	37	11	129724713	129724713	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:129724713T>C	uc001qfe.1	+	3	446	c.385_splice	c.e3+2	p.G129_splice	TMEM45B_uc001qff.1_Splice_Site_p.G129_splice	NM_138788	NP_620143	Q96B21	TM45B_HUMAN	transmembrane protein 45B							integral to membrane					0	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.012)|Lung(977;0.179)|LUSC - Lung squamous cell carcinoma(976;0.189)		TCATGGAAGGTAATTTTGTGG	0.438												
ST14	6768	broad.mit.edu	37	11	130079714	130079714	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:130079714T>C	uc001qfw.2	+	19	2757	c.2564T>C	c.(2563-2565)GTA>GCA	p.V855A		NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	855	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	AACACTGGGGTATAGGGGCCG	0.632												
ADAMTS15	170689	broad.mit.edu	37	11	130331434	130331434	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:130331434T>C	uc010scd.1	+	2	1008	c.1008T>C	c.(1006-1008)GGT>GGC	p.G336G		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	336	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		CTGATGTGGGTACCATGTGTG	0.592												
IGSF9B	22997	broad.mit.edu	37	11	133806051	133806051	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:133806051C>T	uc001qgx.3	-	6	949	c.718G>A	c.(718-720)GTC>ATC	p.V240I	IGSF9B_uc001qgy.1_Missense_Mutation_p.V82I	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	240	Extracellular (Potential).|Ig-like 3.					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		GAGATGTTGACGGTGATGTTC	0.617												
VPS26B	112936	broad.mit.edu	37	11	134114906	134114906	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:134114906T>C	uc001qhe.2	+	5	1252	c.796T>C	c.(796-798)TTC>CTC	p.F266L		NM_052875	NP_443107	Q4G0F5	VP26B_HUMAN	vacuolar protein sorting 26 homolog B	266					protein transport|vacuolar transport	cytosol|retromer complex					0	all_hematologic(175;0.127)	all_cancers(12;1.1e-21)|all_epithelial(12;3.77e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;2.43e-10)|all cancers(11;2.94e-09)|BRCA - Breast invasive adenocarcinoma(10;9.57e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00164)|Lung(977;0.216)		CAACAAGAAGTTCTCTGTGCG	0.617											OREG0021548	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
B3GAT1	27087	broad.mit.edu	37	11	134253954	134253954	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:134253954C>T	uc001qhq.2	-	4	502	c.241G>A	c.(241-243)GAC>AAC	p.D81N	B3GAT1_uc001qhr.2_Missense_Mutation_p.D81N|B3GAT1_uc010scv.1_Missense_Mutation_p.D94N	NM_018644	NP_061114	Q9P2W7	B3GA1_HUMAN	beta-1,3-glucuronyltransferase 1	81	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(1)	1	all_hematologic(175;0.127)	all_cancers(12;1.39e-23)|all_epithelial(12;7.17e-17)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|Medulloblastoma(222;0.0125)|all_neural(223;0.0137)|Esophageal squamous(93;0.0559)		Epithelial(10;2.58e-11)|all cancers(11;5.75e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.000879)|Lung(977;0.0864)		GGCAGCGTGTCGGACCATGGC	0.701												
KDM5A	5927	broad.mit.edu	37	12	416989	416989	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:416989G>A	uc001qif.1	-	23	3924	c.3561C>T	c.(3559-3561)AGC>AGT	p.S1187S	KDM5A_uc001qie.1_Silent_p.S1187S	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	1187	PHD-type 2.				chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						GAGGAACACAGCTGTTATGGA	0.448			T 	NUP98	AML							
B4GALNT3	283358	broad.mit.edu	37	12	667191	667191	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:667191C>T	uc001qii.1	+	17	2544	c.2544C>T	c.(2542-2544)TAC>TAT	p.Y848Y	B4GALNT3_uc001qik.1_Silent_p.Y397Y	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	848	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			GCTACCAGTACGTGAAGCTAA	0.552												
WNK1	65125	broad.mit.edu	37	12	1005855	1005855	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:1005855G>A	uc001qio.3	+	24	6709	c.6202G>A	c.(6202-6204)GAA>AAA	p.E2068K	WNK1_uc001qip.3_Missense_Mutation_p.E1820K|WNK1_uc001qir.3_Missense_Mutation_p.E1241K	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	2068					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			GTCAGATATCGAAGATGAAGA	0.393												
RAD52	5893	broad.mit.edu	37	12	1023614	1023614	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:1023614A>G	uc001qis.1	-	10	1064	c.950T>C	c.(949-951)GTG>GCG	p.V317A	RAD52_uc001qit.1_RNA|RAD52_uc010sdt.1_Missense_Mutation_p.V240A|RAD52_uc001qiu.1_Missense_Mutation_p.V317A|RAD52_uc001qiv.1_RNA|RAD52_uc001qiw.1_RNA	NM_134424	NP_602296	P43351	RAD52_HUMAN	RAD52 homolog	317					DNA recombinase assembly|mitotic recombination|reciprocal meiotic recombination	nucleoplasm	DNA binding|protein binding			central_nervous_system(1)	1	all_cancers(10;0.0119)|all_epithelial(11;0.0171)|all_lung(10;0.0521)|Ovarian(42;0.0816)|Lung NSC(10;0.0987)		OV - Ovarian serous cystadenocarcinoma(31;0.00123)|BRCA - Breast invasive adenocarcinoma(9;0.0323)			TTCTTGAGTCACTCCTGCAAG	0.473								Homologous_recombination				
RAD52	5893	broad.mit.edu	37	12	1034619	1034619	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:1034619G>A	uc001qis.1	-	7	654	c.540C>T	c.(538-540)CGC>CGT	p.R180R	RAD52_uc001qit.1_RNA|RAD52_uc010sdt.1_Silent_p.R103R|RAD52_uc001qiu.1_Silent_p.R180R|RAD52_uc001qiv.1_RNA|RAD52_uc001qiw.1_RNA|RAD52_uc010sdu.1_Silent_p.R180R|RAD52_uc001qix.1_3'UTR	NM_134424	NP_602296	P43351	RAD52_HUMAN	RAD52 homolog	180					DNA recombinase assembly|mitotic recombination|reciprocal meiotic recombination	nucleoplasm	DNA binding|protein binding			central_nervous_system(1)	1	all_cancers(10;0.0119)|all_epithelial(11;0.0171)|all_lung(10;0.0521)|Ovarian(42;0.0816)|Lung NSC(10;0.0987)		OV - Ovarian serous cystadenocarcinoma(31;0.00123)|BRCA - Breast invasive adenocarcinoma(9;0.0323)			GATATACCTGGCGTGGAAGCT	0.428								Homologous_recombination				
ADIPOR2	79602	broad.mit.edu	37	12	1882025	1882025	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:1882025A>G	uc001qjm.2	+	3	386	c.189A>G	c.(187-189)GAA>GAG	p.E63E	ADIPOR2_uc001qjn.2_Silent_p.E63E	NM_024551	NP_078827	Q86V24	ADR2_HUMAN	adiponectin receptor 2	63	Cytoplasmic (Potential).				fatty acid oxidation|hormone-mediated signaling pathway	integral to membrane	hormone binding|receptor activity				0	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000382)			AGGAACATGAATACAGTGATG	0.428												
ADIPOR2	79602	broad.mit.edu	37	12	1889790	1889790	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:1889790C>T	uc001qjm.2	+	5	834	c.637C>T	c.(637-639)CGG>TGG	p.R213W	ADIPOR2_uc001qjn.2_Missense_Mutation_p.R213W	NM_024551	NP_078827	Q86V24	ADR2_HUMAN	adiponectin receptor 2	213	Cytoplasmic (Potential).				fatty acid oxidation|hormone-mediated signaling pathway	integral to membrane	hormone binding|receptor activity				0	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000382)			GGGGGTCTCTCGGCTCTTCTC	0.433												
CACNA2D4	93589	broad.mit.edu	37	12	1904931	1904931	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:1904931C>T	uc001qjp.2	-	36	3360	c.3129G>A	c.(3127-3129)CAG>CAA	p.Q1043Q	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc001qjo.2_Silent_p.Q186Q|CACNA2D4_uc001qjs.1_Silent_p.Q110Q|CACNA2D4_uc010sdw.1_Silent_p.Q173Q|CACNA2D4_uc009zdr.1_RNA	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	1043	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		TGGGAATCTGCTGCACCACAA	0.542												
CACNA1C	775	broad.mit.edu	37	12	2676928	2676928	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:2676928C>T	uc009zdu.1	+	13	2176	c.1863C>T	c.(1861-1863)TGC>TGT	p.C621C	CACNA1C_uc009zdv.1_Silent_p.C618C|CACNA1C_uc001qkb.2_Silent_p.C621C|CACNA1C_uc001qkc.2_Silent_p.C621C|CACNA1C_uc001qke.2_Silent_p.C621C|CACNA1C_uc001qkf.2_Silent_p.C621C|CACNA1C_uc001qjz.2_Silent_p.C621C|CACNA1C_uc001qkd.2_Silent_p.C621C|CACNA1C_uc001qkg.2_Silent_p.C621C|CACNA1C_uc009zdw.1_Silent_p.C621C|CACNA1C_uc001qkh.2_Silent_p.C621C|CACNA1C_uc001qkl.2_Silent_p.C621C|CACNA1C_uc001qkn.2_Silent_p.C621C|CACNA1C_uc001qko.2_Silent_p.C621C|CACNA1C_uc001qkp.2_Silent_p.C621C|CACNA1C_uc001qkr.2_Silent_p.C621C|CACNA1C_uc001qku.2_Silent_p.C621C|CACNA1C_uc001qkq.2_Silent_p.C621C|CACNA1C_uc001qks.2_Silent_p.C621C|CACNA1C_uc001qkt.2_Silent_p.C621C|CACNA1C_uc001qka.1_Silent_p.C156C|CACNA1C_uc001qki.1_Silent_p.C357C|CACNA1C_uc001qkj.1_Silent_p.C357C|CACNA1C_uc001qkk.1_Silent_p.C357C|CACNA1C_uc001qkm.1_Silent_p.C357C	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	621	II.|Helical; Name=S4 of repeat II; (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TGCTCAGATGCGTCCGGCTGC	0.572												
CACNA1C	775	broad.mit.edu	37	12	2716226	2716226	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:2716226T>C	uc009zdu.1	+	27	3659	c.3346T>C	c.(3346-3348)TTT>CTT	p.F1116L	CACNA1C_uc009zdv.1_Missense_Mutation_p.F1093L|CACNA1C_uc001qkb.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qkc.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qke.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qkf.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qjz.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qkd.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qkg.2_Missense_Mutation_p.F1096L|CACNA1C_uc009zdw.1_Missense_Mutation_p.F1096L|CACNA1C_uc001qkh.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qkl.2_Missense_Mutation_p.F1116L|CACNA1C_uc001qkn.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qko.2_Missense_Mutation_p.F1116L|CACNA1C_uc001qkp.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qkr.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qku.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qkq.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qks.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qkt.2_Missense_Mutation_p.F1096L|CACNA1C_uc001qka.1_Missense_Mutation_p.F631L|CACNA1C_uc001qki.1_Missense_Mutation_p.F832L|CACNA1C_uc001qkj.1_Missense_Mutation_p.F832L|CACNA1C_uc001qkk.1_Missense_Mutation_p.F832L|CACNA1C_uc001qkm.1_Missense_Mutation_p.F832L	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1116	Extracellular (Potential).|III.|Dihydropyridine binding (By similarity).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GAACAGCAAGTTTGACTTTGA	0.557												
FKBP4	2288	broad.mit.edu	37	12	2909724	2909724	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:2909724C>T	uc001qkz.2	+	8	1211	c.1013C>T	c.(1012-1014)GCC>GTC	p.A338V		NM_002014	NP_002005	Q02790	FKBP4_HUMAN	FK506 binding protein 52	338	TPR 2.|Interaction with tubulin (By similarity).				negative regulation of microtubule polymerization or depolymerization|negative regulation of neuron projection development|protein folding	axonal growth cone|cytosol|membrane|microtubule|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity|protein binding, bridging				0			OV - Ovarian serous cystadenocarcinoma(31;0.00105)		Dimethyl sulfoxide(DB01093)	TTCTCTGCTGCCATTGAAAGC	0.527												
ITFG2	55846	broad.mit.edu	37	12	2926419	2926419	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:2926419G>A	uc001qlb.1	+	2	191	c.127G>A	c.(127-129)GGG>AGG	p.G43R	ITFG2_uc001qla.1_Missense_Mutation_p.G43R|ITFG2_uc010seb.1_Intron|ITFG2_uc010sec.1_RNA	NM_018463	NP_060933	Q969R8	ITFG2_HUMAN	integrin alpha FG-GAP repeat containing 2	43	FG-GAP 1; atypical.										0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			AGACACCAGCGGGAAGGTGTC	0.502												
FOXM1	2305	broad.mit.edu	37	12	2983279	2983279	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:2983279C>T	uc001qlf.2	-	2	631	c.366G>A	c.(364-366)CGG>CGA	p.R122R	FOXM1_uc001qle.2_Silent_p.R122R|FOXM1_uc001qlg.2_Silent_p.R122R|FOXM1_uc009zea.2_Silent_p.R122R|FOXM1_uc009zeb.2_Silent_p.R122R	NM_021953	NP_068772	Q08050	FOXM1_HUMAN	forkhead box M1 isoform 2	122					cell cycle|embryo development|liver development|negative regulation of cell aging|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|positive regulation of cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of cell growth|regulation of cell proliferation|regulation of oxygen and reactive oxygen species metabolic process|regulation of Ras protein signal transduction|regulation of reactive oxygen species metabolic process|regulation of sequence-specific DNA binding transcription factor activity|tissue development|transcription from RNA polymerase II promoter|vasculogenesis	cytoplasm|transcription factor complex	DNA bending activity|DNA binding|DNA binding|double-stranded DNA binding|promoter binding|protein binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|transcription factor binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			GGGTTTGAGGCCGGAGTCCTG	0.547												
TEAD4	7004	broad.mit.edu	37	12	3129841	3129842	+	Missense_Mutation	DNP	CC	CC	TT			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:3129841_3129842CC>TT	uc010sej.1	+	9	899_900	c.622_623CC>TT	c.(622-624)CCC>TTC	p.P208F	TEAD4_uc010sek.1_Missense_Mutation_p.P165F|TEAD4_uc001qln.2_Missense_Mutation_p.P80F	NM_003213	NP_003204	Q15561	TEAD4_HUMAN	TEA domain family member 4 isoform 1	209					hippo signaling cascade|muscle organ development|skeletal system development		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(42;0.211)		OV - Ovarian serous cystadenocarcinoma(31;0.000563)|COAD - Colon adenocarcinoma(12;0.0831)			GCCCTCTGCGCCCCCGGCACCC	0.668												
PRMT8	56341	broad.mit.edu	37	12	3649830	3649830	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:3649830G>A	uc001qmf.2	+	2	501	c.134G>A	c.(133-135)TGC>TAC	p.C45Y	PRMT8_uc009zed.2_Missense_Mutation_p.C36Y|PRMT8_uc009zee.1_RNA	NM_019854	NP_062828	Q9NR22	ANM8_HUMAN	HMT1 hnRNP methyltransferase-like 4	45					regulation of protein binding	cytoplasm|plasma membrane	histone-arginine N-methyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity			ovary(3)|central_nervous_system(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(31;0.0109)|COAD - Colon adenocarcinoma(12;0.0264)			CCCGTGCAATGCGTCCATCAT	0.607												
AKAP3	10566	broad.mit.edu	37	12	4737718	4737718	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:4737718T>C	uc001qnb.3	-	4	579	c.350A>G	c.(349-351)AAC>AGC	p.N117S		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	117					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						TGAACTCCCGTTGCCAAGTTG	0.493												
GALNT8	26290	broad.mit.edu	37	12	4870167	4870167	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:4870167G>A	uc001qne.1	+	7	1309	c.1217G>A	c.(1216-1218)CGG>CAG	p.R406Q		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	406	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						CCCTGTTCCCGGATTGCCCAC	0.537												
KCNA1	3736	broad.mit.edu	37	12	5020786	5020786	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:5020786T>C	uc001qnh.2	+	2	1347	c.242T>C	c.(241-243)TTC>TCC	p.F81S		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	81					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AACGAGTACTTCTTCGACCGC	0.627												
KCNA5	3741	broad.mit.edu	37	12	5153912	5153912	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:5153912T>C	uc001qni.2	+	1	828	c.599T>C	c.(598-600)ATA>ACA	p.I200T		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	200						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						GCGGACGAGATACGCTTCTAC	0.637												
NTF3	4908	broad.mit.edu	37	12	5603650	5603650	+	Silent	SNP	C	C	T	rs35988749	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:5603650C>T	uc001qnl.3	+	1	353	c.270C>T	c.(268-270)ACC>ACT	p.T90T	NTF3_uc001qnk.3_Silent_p.T103T	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	90					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						CAATGGACACCGAACTGCTGC	0.617												
CD27	939	broad.mit.edu	37	12	6559390	6559390	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:6559390G>A	uc001qod.2	+	3	531	c.320G>A	c.(319-321)CGC>CAC	p.R107H	LOC678655_uc001qob.2_Intron|LOC678655_uc001qoc.2_Intron|LOC678655_uc009zel.1_Intron|CD27_uc001qoe.2_5'UTR|LOC678655_uc009zem.1_Intron|LOC678655_uc001qof.2_Intron|TAPBPL_uc001qog.3_5'Flank|TAPBPL_uc001qoh.3_5'Flank|TAPBPL_uc001qoi.1_5'Flank	NM_001242	NP_001233	P26842	CD27_HUMAN	tumor necrosis factor receptor superfamily,	107	Extracellular (Potential).|TNFR-Cys 3.				anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway|immunoglobulin mediated immune response|induction of apoptosis|positive regulation of B cell differentiation|positive regulation of JNK cascade|release of cytoplasmic sequestered NF-kappaB	extracellular region|integral to plasma membrane	caspase inhibitor activity|protein binding|transmembrane receptor activity				0						TGTGCCTGTCGCAATGGCTGG	0.602												
CD27	939	broad.mit.edu	37	12	6559772	6559772	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:6559772C>T	uc001qod.2	+	4	725	c.514C>T	c.(514-516)CGG>TGG	p.R172W	LOC678655_uc001qob.2_Intron|LOC678655_uc001qoc.2_RNA|LOC678655_uc009zel.1_RNA|CD27_uc001qoe.2_Missense_Mutation_p.R22W|LOC678655_uc009zem.1_RNA|LOC678655_uc001qof.2_Intron|TAPBPL_uc001qog.3_5'Flank|TAPBPL_uc001qoh.3_5'Flank|TAPBPL_uc001qoi.1_5'Flank	NM_001242	NP_001233	P26842	CD27_HUMAN	tumor necrosis factor receptor superfamily,	172	Extracellular (Potential).				anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway|immunoglobulin mediated immune response|induction of apoptosis|positive regulation of B cell differentiation|positive regulation of JNK cascade|release of cytoplasmic sequestered NF-kappaB	extracellular region|integral to plasma membrane	caspase inhibitor activity|protein binding|transmembrane receptor activity				0						GCTGCCTGCCCGGACTCTCTC	0.572												
CHD4	1108	broad.mit.edu	37	12	6707246	6707246	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:6707246A>G	uc001qpo.2	-	12	1870	c.1706T>C	c.(1705-1707)GTG>GCG	p.V569A	CHD4_uc001qpn.2_Missense_Mutation_p.V562A|CHD4_uc001qpp.2_Missense_Mutation_p.V566A	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	569	Chromo 1.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TCGGAACATCACCTGACAGTG	0.473												
ZNF384	171017	broad.mit.edu	37	12	6778267	6778267	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:6778267T>C	uc010sfh.1	-	10	1470	c.1262A>G	c.(1261-1263)CAC>CGC	p.H421R	ZNF384_uc001qpz.2_Missense_Mutation_p.H360R|ZNF384_uc001qqa.2_Missense_Mutation_p.H360R|ZNF384_uc001qqb.2_Missense_Mutation_p.H344R|ZNF384_uc001qqc.2_Missense_Mutation_p.H360R|ZNF384_uc001qqd.2_Missense_Mutation_p.H305R|ZNF384_uc001qqe.2_Missense_Mutation_p.H344R	NM_001135734	NP_001129206	Q8TF68	ZN384_HUMAN	nuclear matrix transcription factor 4 isoform d	421	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/ZNF384(4)	haematopoietic_and_lymphoid_tissue(4)|central_nervous_system(3)|kidney(1)	8						CGTAGACAGGTGCACCTCTAG	0.517			T	EWSR1|TAF15 	ALL							
C12orf57	113246	broad.mit.edu	37	12	7053291	7053291	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:7053291T>C	uc001qrz.2	+	1	89	c.7T>C	c.(7-9)TCC>CCC	p.S3P	C12orf57_uc009zfj.1_Intron|PTPN6_uc001qsa.1_5'Flank|PTPN6_uc010sfr.1_5'Flank	NM_138425	NP_612434	Q99622	C10_HUMAN	C10 protein	3											0						CCCTATGGCGTCCGCCTCGAC	0.587											OREG0021642	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
PTPN6	5777	broad.mit.edu	37	12	7064896	7064896	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:7064896A>G	uc001qsb.2	+	7	1063	c.821A>G	c.(820-822)AAC>AGC	p.N274S	PTPN6_uc001qsa.1_Missense_Mutation_p.N276S|PTPN6_uc010sfr.1_Missense_Mutation_p.N235S|PTPN6_uc009zfl.1_Missense_Mutation_p.N274S|PTPN6_uc010sfs.1_Missense_Mutation_p.N262S	NM_002831	NP_002822	P29350	PTN6_HUMAN	protein tyrosine phosphatase, non-receptor type	274	Tyrosine-protein phosphatase.				apoptosis|cell junction assembly|G-protein coupled receptor protein signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|negative regulation of peptidyl-tyrosine phosphorylation|platelet activation|positive regulation of cell proliferation|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of G1/S transition of mitotic cell cycle|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol|membrane|nucleus	protein binding|protein tyrosine phosphatase activity			breast(1)	1						AAGGGCAAGAACCGCTACAAG	0.587												
PTPN6	5777	broad.mit.edu	37	12	7066906	7066906	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:7066906C>T	uc001qsb.2	+	10	1406	c.1164C>T	c.(1162-1164)ACC>ACT	p.T388T	PTPN6_uc001qsa.1_Silent_p.T390T|PTPN6_uc010sfr.1_Silent_p.T349T|PTPN6_uc009zfl.1_Silent_p.T388T|PTPN6_uc010sfs.1_Silent_p.T376T	NM_002831	NP_002822	P29350	PTN6_HUMAN	protein tyrosine phosphatase, non-receptor type	388	Tyrosine-protein phosphatase.				apoptosis|cell junction assembly|G-protein coupled receptor protein signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|negative regulation of peptidyl-tyrosine phosphorylation|platelet activation|positive regulation of cell proliferation|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of G1/S transition of mitotic cell cycle|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol|membrane|nucleus	protein binding|protein tyrosine phosphatase activity			breast(1)	1						ATGACACAACCGAATACAAAC	0.592												
APOBEC1	339	broad.mit.edu	37	12	7805264	7805264	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:7805264G>A	uc001qtb.2	-	3	246	c.212C>T	c.(211-213)ACG>ATG	p.T71M	APOBEC1_uc001qtc.2_Missense_Mutation_p.T26M|APOBEC1_uc010sgf.1_Missense_Mutation_p.T71M	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	71					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						TCTTTCTGACGtaaatttttt	0.468												
FOXJ2	55810	broad.mit.edu	37	12	8196589	8196589	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:8196589C>T	uc001qtu.2	+	5	1605	c.520C>T	c.(520-522)CGG>TGG	p.R174W	FOXJ2_uc001qtt.1_Missense_Mutation_p.R174W	NM_018416	NP_060886	Q9P0K8	FOXJ2_HUMAN	forkhead box J2	174					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	nucleolus|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				Kidney(36;0.0944)		CAAGAGCCCACGGGGAGGCGT	0.547												
PHC1	1911	broad.mit.edu	37	12	9089487	9089487	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:9089487T>C	uc001qvd.2	+	12	2560	c.2404T>C	c.(2404-2406)TAC>CAC	p.Y802H	PHC1_uc001qve.2_Missense_Mutation_p.Y802H	NM_004426	NP_004417	P78364	PHC1_HUMAN	polyhomeotic 1-like	802	FCS-type.				multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						GAAGTGCGAGTACTGTGGGAA	0.527												
KLRB1	3820	broad.mit.edu	37	12	9754153	9754153	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:9754153A>T	uc010sgt.1	-	2	190	c.128T>A	c.(127-129)CTT>CAT	p.L43H		NM_002258	NP_002249	Q12918	KLRB1_HUMAN	killer cell lectin-like receptor subfamily B,	43	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	sugar binding|transmembrane receptor activity				0						AGCACAGCTAAGTTTCAGGGC	0.338												
CSDA	8531	broad.mit.edu	37	12	10854626	10854626	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:10854626T>C	uc001qyt.2	-	8	1229	c.986A>G	c.(985-987)TAC>TGC	p.Y329C	CSDA_uc001qyu.2_Missense_Mutation_p.Y260C	NM_003651	NP_003642	P16989	DBPA_HUMAN	cold shock domain protein A isoform a	329					negative regulation of transcription from RNA polymerase II promoter|response to cold	cytoplasm|nucleus	double-stranded DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|lung(1)|large_intestine(1)	4	Glioma(1;0.155)					GGGACGCCGGTATCCACGGCG	0.582												
GPRC5A	9052	broad.mit.edu	37	12	13065434	13065434	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:13065434C>T	uc001rba.2	+	4	1685	c.1035C>T	c.(1033-1035)AGC>AGT	p.S345S	uc001rbb.3_5'Flank	NM_003979	NP_003970	Q8NFJ5	RAI3_HUMAN	G protein-coupled receptor, family C, group 5,	345	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|Golgi apparatus|integral to plasma membrane	G-protein coupled receptor activity				0		Prostate(47;0.141)		BRCA - Breast invasive adenocarcinoma(232;0.0708)	Tretinoin(DB00755)	CTTGGCCGAGCCCTTACAAAG	0.537												
KIAA1467	57613	broad.mit.edu	37	12	13215855	13215855	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:13215855C>T	uc001rbi.2	+	5	821	c.798C>T	c.(796-798)GAC>GAT	p.D266D	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	266						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		TACTGCCAGACTTGGATGAAG	0.468												
GRIN2B	2904	broad.mit.edu	37	12	13716145	13716145	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:13716145A>G	uc001rbt.2	-	13	4206	c.4027T>C	c.(4027-4029)TCA>CCA	p.S1343P		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1343	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCGCCAGCTGACATCTCAAAC	0.607												
ATF7IP	55729	broad.mit.edu	37	12	14613945	14613945	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:14613945T>C	uc001rbw.2	+	9	2833	c.2675T>C	c.(2674-2676)GTG>GCG	p.V892A	ATF7IP_uc010shs.1_3'UTR|ATF7IP_uc001rbu.2_Missense_Mutation_p.V892A|ATF7IP_uc001rbv.1_Missense_Mutation_p.V891A|ATF7IP_uc001rbx.2_Missense_Mutation_p.V891A|ATF7IP_uc010sht.1_3'UTR|ATF7IP_uc001rby.3_Missense_Mutation_p.V892A|ATF7IP_uc001rca.2_Missense_Mutation_p.V892A	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	892					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						TTACCCACAGTGGGCCCATCA	0.468												
PLBD1	79887	broad.mit.edu	37	12	14664232	14664232	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:14664232T>C	uc001rcc.1	-	8	1309	c.1148A>G	c.(1147-1149)TAT>TGT	p.Y383C		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	383					lipid catabolic process	extracellular region	hydrolase activity				0						ATATTCTACATATGTAGGAAT	0.373												
GUCY2C	2984	broad.mit.edu	37	12	14827604	14827604	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:14827604T>C	uc001rcd.2	-	8	1176	c.1039A>G	c.(1039-1041)ACC>GCC	p.T347A	GUCY2C_uc009zhz.2_Missense_Mutation_p.T347A	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	347	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						TTGGGGGTGGTAATATTTTCT	0.373												
C12orf60	144608	broad.mit.edu	37	12	14976450	14976450	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:14976450T>C	uc001rcj.3	+	2	785	c.581T>C	c.(580-582)GTA>GCA	p.V194A		NM_175874	NP_787070	Q5U649	CL060_HUMAN	hypothetical protein LOC144608	194										ovary(1)|central_nervous_system(1)	2						CTGCAGGATGTACTAAAAACT	0.413												
ERP27	121506	broad.mit.edu	37	12	15090939	15090939	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:15090939C>T	uc001rco.2	-	2	163	c.142G>A	c.(142-144)GCT>ACT	p.A48T		NM_152321	NP_689534	Q96DN0	ERP27_HUMAN	endoplasmic reticulum protein 27 kDa precursor	48	Thioredoxin.					endoplasmic reticulum lumen				breast(1)	1						TCCATGGCAGCTGGGACATCT	0.527												
RERG	85004	broad.mit.edu	37	12	15264338	15264338	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:15264338T>C	uc001rcs.2	-	3	272	c.132A>G	c.(130-132)CGA>CGG	p.R44R	RERG_uc001rct.2_Silent_p.R44R|RERG_uc010shu.1_Silent_p.R25R	NM_032918	NP_116307	Q96A58	RERG_HUMAN	RAS-like, estrogen-regulated, growth inhibitor	44					negative regulation of cell growth|negative regulation of cell proliferation|response to hormone stimulus|small GTPase mediated signal transduction	cytosol|membrane|nucleus	estrogen receptor binding|GDP binding|GTP binding|GTPase activity			lung(1)	1						TTGCTTGGTGTCGGTAGGTTG	0.353												
PTPRO	5800	broad.mit.edu	37	12	15734725	15734725	+	Missense_Mutation	SNP	G	G	A	rs146574957		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:15734725G>A	uc001rcv.1	+	23	3419	c.3245G>A	c.(3244-3246)CGG>CAG	p.R1082Q	PTPRO_uc001rcw.1_Missense_Mutation_p.R1054Q|PTPRO_uc001rcx.1_Missense_Mutation_p.R271Q|PTPRO_uc001rcy.1_Missense_Mutation_p.R271Q|PTPRO_uc001rcz.1_Missense_Mutation_p.R243Q|PTPRO_uc001rda.1_Missense_Mutation_p.R243Q	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	1082	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				AGACACTTCCGGATCAACTAT	0.398												
PDE3A	5139	broad.mit.edu	37	12	20766423	20766423	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:20766423C>G	uc001reh.1	+	3	1080	c.1058C>G	c.(1057-1059)GCC>GGC	p.A353G		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	353					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	ATGGGCGAGGCCCACGGCCTC	0.542												
PDE3A	5139	broad.mit.edu	37	12	20792787	20792787	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:20792787A>G	uc001reh.1	+	10	2169	c.2147A>G	c.(2146-2148)TAC>TGC	p.Y716C		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	716					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CAGGTATCTTACAGACTTTTT	0.343												
PDE3A	5139	broad.mit.edu	37	12	20799759	20799759	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:20799759T>A	uc001reh.1	+	12	2462	c.2440T>A	c.(2440-2442)TAC>AAC	p.Y814N		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	814	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	AGATGATAAATACGGATGTCT	0.418												
LST-3TM12	338821	broad.mit.edu	37	12	21174422	21174422	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:21174422T>C	uc010sin.1	+	3	246	c.246T>C	c.(244-246)ATT>ATC	p.I82I	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Silent_p.I129I	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	82						membrane	transporter activity				0						AAACCAATATTGATCCATCAG	0.308												
SLCO1B3	28234	broad.mit.edu	37	12	21229407	21229407	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:21229407A>G	uc010sil.1	+	15	2017	c.1952A>G	c.(1951-1953)TAT>TGT	p.Y651C	LST-3TM12_uc010sim.1_Missense_Mutation_p.Y590C|LST-3TM12_uc010sin.1_Missense_Mutation_p.Y543C			Q9NPD5	SO1B3_HUMAN	SubName: Full=Liver-specific organic anion transporter 3TM13; SubName: Full=Organic anion transporter LST-3c;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					GTTCCAATATATTTTGGGGCT	0.378												
SLCO1B1	10599	broad.mit.edu	37	12	21375266	21375266	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:21375266T>C	uc001req.3	+	13	1819	c.1715T>C	c.(1714-1716)CTG>CCG	p.L572P		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	572	Helical; Name=11; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	TCACTTGCACTGGGTTTCCAC	0.234												
RECQL	5965	broad.mit.edu	37	12	21623156	21623156	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:21623156G>T	uc001rex.2	-	16	2270	c.1922C>A	c.(1921-1923)GCT>GAT	p.A641D	RECQL_uc001rey.2_Missense_Mutation_p.A641D|PYROXD1_uc001rew.2_3'UTR|PYROXD1_uc009ziq.2_3'UTR|PYROXD1_uc009zir.2_3'UTR	NM_032941	NP_116559	P46063	RECQ1_HUMAN	RecQ protein-like	641					DNA recombination|DNA repair|DNA replication	nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|DNA strand annealing activity|protein binding			ovary(1)|lung(1)	2						TCTTTTCTTAGCTCCTGTATT	0.333								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function				
LDHB	3945	broad.mit.edu	37	12	21788591	21788591	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:21788591T>C	uc001rfc.2	-	7	908	c.890A>G	c.(889-891)AAT>AGT	p.N297S	LDHB_uc001rfd.2_Missense_Mutation_p.N297S|LDHB_uc001rfe.2_Missense_Mutation_p.N297S	NM_002300	NP_002291	P07195	LDHB_HUMAN	L-lactate dehydrogenase B	297					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity			breast(2)|ovary(1)	3					NADH(DB00157)	TCCCCGGGCATTGAGGATACA	0.458												
KCNJ8	3764	broad.mit.edu	37	12	21919133	21919133	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:21919133T>C	uc001rff.2	-	3	1137	c.799A>G	c.(799-801)ATC>GTC	p.I267V		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	267	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	ACGTGGCAGATGATCAAAGGG	0.483												
ABCC9	10060	broad.mit.edu	37	12	21970154	21970154	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:21970154T>C	uc001rfi.1	-	31	3879	c.3859A>G	c.(3859-3861)ACT>GCT	p.T1287A	ABCC9_uc001rfh.2_Missense_Mutation_p.T1287A|ABCC9_uc001rfj.1_Missense_Mutation_p.T1251A	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1287	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GACTCCATAGTCAGGAAACTG	0.388												
ABCC9	10060	broad.mit.edu	37	12	22061055	22061055	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:22061055A>G	uc001rfi.1	-	9	1431	c.1411T>C	c.(1411-1413)TAC>CAC	p.Y471H	ABCC9_uc001rfh.2_Missense_Mutation_p.Y471H|ABCC9_uc001rfj.1_Missense_Mutation_p.Y471H	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	471	ABC transmembrane type-1 1.|Helical; Name=9; (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GCAATAAAGTACTGAATTGGC	0.373												
SOX5	6660	broad.mit.edu	37	12	23716308	23716308	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:23716308T>C	uc001rfw.2	-	11	1474	c.1372A>G	c.(1372-1374)AAG>GAG	p.K458E	SOX5_uc001rfx.2_Missense_Mutation_p.K445E|SOX5_uc001rfy.2_Intron|SOX5_uc001rfv.2_Missense_Mutation_p.K72E|SOX5_uc010siv.1_Missense_Mutation_p.K445E|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Missense_Mutation_p.K410E	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	458	Potential.				transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						TGGATTGCCTTGGTGACAGCA	0.428												
SOX5	6660	broad.mit.edu	37	12	23893942	23893942	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:23893942C>T	uc001rfw.2	-	5	702	c.600G>A	c.(598-600)AGG>AGA	p.R200R	SOX5_uc001rfx.2_Silent_p.R187R|SOX5_uc001rfy.2_Silent_p.R187R|SOX5_uc010siv.1_Silent_p.R187R|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Silent_p.R152R	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	200	Potential.				transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						CCATGAGTTGCCTTTCTTTCT	0.423												
BCAT1	586	broad.mit.edu	37	12	25002718	25002718	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:25002718A>G	uc001rgd.3	-	6	1116	c.674_splice	c.e6+1	p.G225_splice	BCAT1_uc001rgc.2_Splice_Site_p.G224_splice|BCAT1_uc010six.1_Splice_Site_p.G237_splice|BCAT1_uc010siy.1_Splice_Site_p.G188_splice|BCAT1_uc001rge.3_Splice_Site_p.G164_splice	NM_005504	NP_005495	P54687	BCAT1_HUMAN	branched chain aminotransferase 1, cytosolic						branched chain family amino acid biosynthetic process|branched chain family amino acid catabolic process|cell proliferation|G1/S transition of mitotic cell cycle	cytosol	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			lung(1)|breast(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Ovarian(17;0.107)|Colorectal(261;0.196)				Gabapentin(DB00996)|L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|L-Valine(DB00161)|Pyridoxal Phosphate(DB00114)	AGATTTACTTACCCTCCCATC	0.408												
ITPR2	3709	broad.mit.edu	37	12	26714699	26714699	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:26714699A>G	uc001rhg.2	-	35	5234	c.4817T>C	c.(4816-4818)TTA>TCA	p.L1606S		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1606	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					ATGTACCTGTAACTTTTCAAT	0.333												
FGFR1OP2	26127	broad.mit.edu	37	12	27107161	27107161	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:27107161G>A	uc001rhm.2	+	2	412	c.70G>A	c.(70-72)GAT>AAT	p.D24N	FGFR1OP2_uc001rhl.2_Missense_Mutation_p.D24N|FGFR1OP2_uc001rhn.2_Missense_Mutation_p.D24N	NM_015633	NP_056448	Q9NVK5	FGOP2_HUMAN	FGFR1 oncogene partner 2	24	Potential.					cytoplasm					0	Colorectal(261;0.0847)					AGATCATGACGATGCAGCAGA	0.358												
STK38L	23012	broad.mit.edu	37	12	27475266	27475266	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:27475266A>G	uc001rhr.2	+	14	1472	c.1273A>G	c.(1273-1275)AAT>GAT	p.N425D	STK38L_uc001rhs.2_RNA|STK38L_uc010sjm.1_Missense_Mutation_p.N332D|STK38L_uc010sjn.1_Missense_Mutation_p.N163D|STK38L_uc010sjo.1_Missense_Mutation_p.N90D	NM_015000	NP_055815	Q9Y2H1	ST38L_HUMAN	serine/threonine kinase 38 like	425	AGC-kinase C-terminal.				intracellular protein kinase cascade|regulation of cellular component organization	actin cytoskeleton|cytoplasm	actin binding|ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|kidney(1)	5	Colorectal(261;0.0847)					TCTAGTGCCAAATACCACAGA	0.363												
FAR2	55711	broad.mit.edu	37	12	29485561	29485561	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:29485561A>G	uc001ris.3	+	11	1433	c.1286A>G	c.(1285-1287)AAC>AGC	p.N429S	FAR2_uc001rit.2_Missense_Mutation_p.N429S|FAR2_uc009zjm.2_Missense_Mutation_p.N332S	NM_018099	NP_060569	Q96K12	FACR2_HUMAN	fatty acyl CoA reductase 2	429					ether lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	binding|oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor				0						CGCCAGTTGAACTGGTTGGAA	0.403												
ERGIC2	51290	broad.mit.edu	37	12	29524548	29524548	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:29524548T>C	uc001riv.2	-	2	152	c.19A>G	c.(19-21)AAA>GAA	p.K7E	ERGIC2_uc001riw.2_RNA	NM_016570	NP_057654	Q96RQ1	ERGI2_HUMAN	PTX1 protein	7	Cytoplasmic (Potential).				vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane|nucleus				ovary(1)	1	Lung NSC(12;2.02e-08)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)|Lung SC(9;0.184)				Arsenic trioxide(DB01169)	AAAGTTTTTTTCCGATTCAGT	0.378												
IPO8	10526	broad.mit.edu	37	12	30814171	30814171	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:30814171A>G	uc001rjd.2	-	16	1955	c.1785T>C	c.(1783-1785)AGT>AGC	p.S595S	IPO8_uc001rje.1_Silent_p.S84S|IPO8_uc010sjt.1_Silent_p.S390S	NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	595					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					CATATTCATCACTTTGAAGAA	0.333												
IPO8	10526	broad.mit.edu	37	12	30815390	30815390	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:30815390A>G	uc001rjd.2	-	15	1796	c.1626T>C	c.(1624-1626)CCT>CCC	p.P542P	IPO8_uc001rje.1_Silent_p.P31P|IPO8_uc010sjt.1_Silent_p.P337P	NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	542					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					CCTGCATAATAGGCCTCACAT	0.343												
CAPRIN2	65981	broad.mit.edu	37	12	30873765	30873765	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:30873765T>A	uc001rji.1	-	12	2879	c.2128A>T	c.(2128-2130)ATG>TTG	p.M710L	CAPRIN2_uc001rjf.1_Missense_Mutation_p.M507L|CAPRIN2_uc001rjg.1_Missense_Mutation_p.M377L|CAPRIN2_uc001rjh.1_Missense_Mutation_p.M710L|CAPRIN2_uc001rjj.1_Missense_Mutation_p.M377L|CAPRIN2_uc001rjk.3_Missense_Mutation_p.M710L|CAPRIN2_uc001rjl.3_Intron|CAPRIN2_uc001rjm.1_Intron	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	710					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					TCTGAGGTCATAAACTCTGTT	0.378												
DENND5B	160518	broad.mit.edu	37	12	31545266	31545266	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:31545266A>G	uc001rki.1	-	19	3587	c.3401T>C	c.(3400-3402)GTT>GCT	p.V1134A	DENND5B_uc001rkh.1_Missense_Mutation_p.V1169A|DENND5B_uc009zjq.1_Intron	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	1134	RUN 2.					integral to membrane				ovary(1)|central_nervous_system(1)	2						ATGGTGGAAAACTTGCTCAAG	0.453												
BICD1	636	broad.mit.edu	37	12	32481126	32481126	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:32481126A>G	uc001rku.2	+	5	1818	c.1737A>G	c.(1735-1737)GAA>GAG	p.E579E	BICD1_uc001rkv.2_Silent_p.E579E|BICD1_uc010skd.1_RNA	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	579					anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			CCTCATCTGAACCAGTTGCAA	0.532												
FGD4	121512	broad.mit.edu	37	12	32754251	32754251	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:32754251T>C	uc001rkz.2	+	6	1207	c.730T>C	c.(730-732)TCG>CCG	p.S244P	FGD4_uc001rlc.2_Missense_Mutation_p.S329P|FGD4_uc001rky.2_5'UTR|FGD4_uc001rla.2_5'UTR|FGD4_uc010ske.1_Missense_Mutation_p.S356P|FGD4_uc001rlb.1_RNA	NM_139241	NP_640334	Q96M96	FGD4_HUMAN	FYVE, RhoGEF and PH domain containing 4	244	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|filopodium|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)					aaaccgaggctcGTTTCCAGC	0.179												
KIF21A	55605	broad.mit.edu	37	12	39703510	39703510	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:39703510A>G	uc001rly.2	-	33	4301	c.4155T>C	c.(4153-4155)GGT>GGC	p.G1385G	KIF21A_uc001rlv.2_Silent_p.G330G|KIF21A_uc001rlw.2_Silent_p.G655G|KIF21A_uc001rlx.2_Silent_p.G1372G|KIF21A_uc001rlz.2_Silent_p.G1332G|KIF21A_uc010skl.1_Silent_p.G1348G|KIF21A_uc001rlt.2_Silent_p.G5G|KIF21A_uc001rlu.2_Silent_p.G5G	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	1385	WD 2.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				TGTTGGGATGACCCCCCAGTG	0.358												
C12orf40	283461	broad.mit.edu	37	12	40040225	40040225	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:40040225T>C	uc001rmc.2	+	4	464	c.297T>C	c.(295-297)TGT>TGC	p.C99C	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	99										ovary(6)	6						CGCCTCACTGTGTACCTTCTA	0.338												
SLC2A13	114134	broad.mit.edu	37	12	40223949	40223949	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:40223949A>G	uc010skm.1	-	7	1452	c.1401T>C	c.(1399-1401)TGT>TGC	p.C467C	C12orf40_uc009zjv.1_Intron|SLC2A13_uc001rme.1_Silent_p.C114C	NM_052885	NP_443117	Q96QE2	MYCT_HUMAN	solute carrier family 2 (facilitated glucose	467	Extracellular (Potential).					integral to membrane|plasma membrane	myo-inositol:hydrogen symporter activity			ovary(1)	1		Lung NSC(34;0.105)|all_lung(34;0.123)				TAACTGGAACACAGGAGGAGT	0.363										HNSCC(50;0.14)		
PRICKLE1	144165	broad.mit.edu	37	12	42853620	42853620	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:42853620A>G	uc010skv.1	-	8	2774	c.2487T>C	c.(2485-2487)ATT>ATC	p.I829I	PRICKLE1_uc001rnl.2_Silent_p.I829I|PRICKLE1_uc010skw.1_Silent_p.I829I|PRICKLE1_uc001rnm.2_Silent_p.I829I|PRICKLE1_uc001rnk.1_5'Flank	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	829				Missing: Abolishes localization to the nuclear membrane.	negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		GTTAAGAAATAATACAATTTT	0.393												
PRICKLE1	144165	broad.mit.edu	37	12	42853889	42853889	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:42853889C>T	uc010skv.1	-	8	2505	c.2218G>A	c.(2218-2220)GAT>AAT	p.D740N	PRICKLE1_uc001rnl.2_Missense_Mutation_p.D740N|PRICKLE1_uc010skw.1_Missense_Mutation_p.D740N|PRICKLE1_uc001rnm.2_Missense_Mutation_p.D740N|PRICKLE1_uc001rnk.1_5'Flank	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	740					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		AGGCCATAATCGGAAGTGGCA	0.493												
ADAMTS20	80070	broad.mit.edu	37	12	43792885	43792885	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:43792885G>A	uc010skx.1	-	29	4436	c.4436C>T	c.(4435-4437)GCC>GTC	p.A1479V		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1479	TSP type-1 12.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CCAGCTATTGGCTTTCCATGA	0.299												
PUS7L	83448	broad.mit.edu	37	12	44136258	44136258	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:44136258A>G	uc001rnq.3	-	5	1851	c.1362_splice	c.e5+1	p.M454_splice	PUS7L_uc001rnr.3_Splice_Site_p.M454_splice|PUS7L_uc001rns.3_Splice_Site_p.M454_splice|PUS7L_uc009zkb.2_Splice_Site_p.M141_splice	NM_001098615	NP_001092085	Q9H0K6	PUS7L_HUMAN	pseudouridylate synthase 7 homolog (S.						pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			pancreas(1)	1	all_cancers(12;0.00027)	Lung NSC(34;0.114)|all_lung(34;0.24)		GBM - Glioblastoma multiforme(48;0.0402)		CAAAATCCATACCATTTCATT	0.348												
TMEM117	84216	broad.mit.edu	37	12	44782204	44782204	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:44782204A>G	uc001rod.2	+	8	1360	c.1294A>G	c.(1294-1296)ACT>GCT	p.T432A	TMEM117_uc001roe.2_Missense_Mutation_p.T328A|TMEM117_uc009zkc.2_3'UTR	NM_032256	NP_115632	Q9H0C3	TM117_HUMAN	transmembrane protein 117	432						endoplasmic reticulum|integral to membrane					0	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.124)		CAAAACTTACACTCGCATGAA	0.418												
NELL2	4753	broad.mit.edu	37	12	45170874	45170874	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:45170874A>G	uc001rog.2	-	7	1308	c.713T>C	c.(712-714)GTG>GCG	p.V238A	NELL2_uc001rof.3_Missense_Mutation_p.V237A|NELL2_uc001roh.2_Missense_Mutation_p.V238A|NELL2_uc009zkd.2_Missense_Mutation_p.V237A|NELL2_uc010skz.1_Missense_Mutation_p.V288A|NELL2_uc010sla.1_Missense_Mutation_p.V261A|NELL2_uc001roi.1_Missense_Mutation_p.V238A|NELL2_uc010slb.1_Missense_Mutation_p.V237A|NELL2_uc001roj.2_Missense_Mutation_p.V238A	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	238	TSP N-terminal.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		GATTTTCTGCACAAGTCCATG	0.388												
ANO6	196527	broad.mit.edu	37	12	45771863	45771863	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:45771863A>G	uc001roo.2	+	10	1467	c.1132A>G	c.(1132-1134)ACC>GCC	p.T378A	ANO6_uc010sld.1_Missense_Mutation_p.T378A|ANO6_uc010sle.1_Missense_Mutation_p.T378A|ANO6_uc010slf.1_Missense_Mutation_p.T399A|ANO6_uc010slg.1_Missense_Mutation_p.T360A	NM_001025356	NP_001020527	Q4KMQ2	ANO6_HUMAN	anoctamin 6 isoform a	378	Helical; (Potential).				activation of blood coagulation via clotting cascade|phosphatidylserine exposure on blood platelet	chloride channel complex|plasma membrane	chloride channel activity			ovary(1)|kidney(1)	2						CAGTTTTGGAACCCTGGTCTT	0.313												
SFRS2IP	9169	broad.mit.edu	37	12	46316821	46316821	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:46316821C>T	uc001rox.2	-	13	4310	c.4023G>A	c.(4021-4023)TCG>TCA	p.S1341S	SFRS2IP_uc001row.2_Silent_p.S1026S	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	1341					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		GACTTGATGACGAAGTATTAC	0.468												
SFRS2IP	9169	broad.mit.edu	37	12	46322023	46322023	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:46322023A>G	uc001rox.2	-	11	1748	c.1461T>C	c.(1459-1461)GGT>GGC	p.G487G	SFRS2IP_uc001row.2_Silent_p.G172G|SFRS2IP_uc001roy.1_Silent_p.G561G	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	487					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		CCCCTTCCTCACCAACTAGCA	0.378												
SLC38A2	54407	broad.mit.edu	37	12	46756417	46756417	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:46756417C>T	uc001rpg.2	-	14	1624	c.1184G>A	c.(1183-1185)CGG>CAG	p.R395Q	SLC38A2_uc010sli.1_Missense_Mutation_p.R233Q|SLC38A2_uc001rph.2_Missense_Mutation_p.R295Q	NM_018976	NP_061849	Q96QD8	S38A2_HUMAN	solute carrier family 38, member 2	395	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|glutamate secretion|neurotransmitter secretion|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			urinary_tract(1)|skin(1)	2	Lung SC(27;0.192)|Renal(347;0.236)		OV - Ovarian serous cystadenocarcinoma(5;0.0048)|Epithelial(2;0.0374)	GBM - Glioblastoma multiforme(48;0.226)		TACAGAACTCCGGATCTGCaa	0.313												
SLC38A2	54407	broad.mit.edu	37	12	46758170	46758170	+	Splice_Site	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:46758170A>T	uc001rpg.2	-	10	1313	c.873_splice	c.e10+1	p.Q291_splice	SLC38A2_uc010sli.1_Splice_Site_p.Q129_splice|SLC38A2_uc001rph.2_Splice_Site_p.Q191_splice	NM_018976	NP_061849	Q96QD8	S38A2_HUMAN	solute carrier family 38, member 2						cellular nitrogen compound metabolic process|glutamate secretion|neurotransmitter secretion|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			urinary_tract(1)|skin(1)	2	Lung SC(27;0.192)|Renal(347;0.236)		OV - Ovarian serous cystadenocarcinoma(5;0.0048)|Epithelial(2;0.0374)	GBM - Glioblastoma multiforme(48;0.226)		ATATTTAGTTACCTGTGAGTT	0.393												
SLC38A2	54407	broad.mit.edu	37	12	46758283	46758283	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:46758283G>A	uc001rpg.2	-	10	1202	c.762C>T	c.(760-762)AAC>AAT	p.N254N	SLC38A2_uc010sli.1_Silent_p.N92N|SLC38A2_uc001rph.2_Silent_p.N154N	NM_018976	NP_061849	Q96QD8	S38A2_HUMAN	solute carrier family 38, member 2	254	Extracellular (Potential).				cellular nitrogen compound metabolic process|glutamate secretion|neurotransmitter secretion|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			urinary_tract(1)|skin(1)	2	Lung SC(27;0.192)|Renal(347;0.236)		OV - Ovarian serous cystadenocarcinoma(5;0.0048)|Epithelial(2;0.0374)	GBM - Glioblastoma multiforme(48;0.226)		TTATTGTTTCGTTAATTATCA	0.368												
FAM113B	91523	broad.mit.edu	37	12	47629856	47629856	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:47629856C>T	uc001rpn.2	+	4	1741	c.1010C>T	c.(1009-1011)CCC>CTC	p.P337L	FAM113B_uc001rpq.2_Missense_Mutation_p.P337L	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	337	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					CCACAGGGTCCCCCAGATGCC	0.363												
ADCY6	112	broad.mit.edu	37	12	49170029	49170029	+	Missense_Mutation	SNP	A	A	G	rs143114060	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:49170029A>G	uc001rsh.3	-	7	2300	c.1640T>C	c.(1639-1641)ATT>ACT	p.I547T	ADCY6_uc001rsj.3_Missense_Mutation_p.I547T|ADCY6_uc001rsi.3_Missense_Mutation_p.I547T|ADCY6_uc010slw.1_5'Flank	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	547	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0						GAAAGTCTCAATGTGCTGCTC	0.632												
PRKAG1	5571	broad.mit.edu	37	12	49399287	49399287	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:49399287G>A	uc001rsy.2	-	4	277	c.208C>T	c.(208-210)CGA>TGA	p.R70*	uc001rsw.2_Intron|PRKAG1_uc010smd.1_Nonsense_Mutation_p.R38*|PRKAG1_uc001rsx.2_Translation_Start_Site|PRKAG1_uc001rsz.2_Nonsense_Mutation_p.R70*|PRKAG1_uc009zlb.2_Translation_Start_Site|PRKAG1_uc010sme.1_Nonsense_Mutation_p.R70*	NM_002733	NP_002724	P54619	AAKG1_HUMAN	AMP-activated protein kinase, noncatalytic	70	CBS 1.				cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|positive regulation of protein kinase activity|regulation of fatty acid oxidation|regulation of glycolysis|spermatogenesis	cytosol	cAMP-dependent protein kinase activity|cAMP-dependent protein kinase regulator activity|protein kinase binding			kidney(1)	1						GGGGCAGCTCGTACACCGTTA	0.423												
MLL2	8085	broad.mit.edu	37	12	49434235	49434235	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:49434235C>T	uc001rta.3	-	31	7318	c.7318G>A	c.(7318-7320)GTT>ATT	p.V2440I		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2440	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CGAGGGGTAACGGGTGATGGG	0.622			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)		
MLL2	8085	broad.mit.edu	37	12	49434729	49434729	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:49434729G>A	uc001rta.3	-	31	6824	c.6824C>T	c.(6823-6825)CCC>CTC	p.P2275L		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2275	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						AAAAGGTGGGGGCGAGAGCAG	0.622			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)		
LMBR1L	55716	broad.mit.edu	37	12	49499707	49499707	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:49499707G>A	uc001rth.3	-	3	533	c.191C>T	c.(190-192)GCG>GTG	p.A64V	LMBR1L_uc001rtg.3_Missense_Mutation_p.A59V|LMBR1L_uc001rti.3_Missense_Mutation_p.A64V|LMBR1L_uc001rtj.1_5'Flank|LMBR1L_uc009zld.1_5'UTR|LMBR1L_uc010smf.1_Intron	NM_018113	NP_060583	Q6UX01	LMBRL_HUMAN	lipocalin-interacting membrane receptor	64	LCN1-binding.|Cytoplasmic (Potential).				endocytosis	integral to membrane|plasma membrane	receptor activity			pancreas(1)	1						GGACACTTACGCAATCTTGTT	0.557												
PRPH	5630	broad.mit.edu	37	12	49689976	49689976	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:49689976G>A	uc001rtu.2	+	2	636	c.561G>A	c.(559-561)ACG>ACA	p.T187T		NM_006262	NP_006253	P41219	PERI_HUMAN	peripherin	187	Coil 1B.|Rod.						structural molecule activity				0						AGGAGGAGACGCGCAAGCGGG	0.682												
NCKAP5L	57701	broad.mit.edu	37	12	50196941	50196941	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:50196941T>G	uc009zlk.2	-	4	333	c.131A>C	c.(130-132)AAC>ACC	p.N44T		NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	40	Potential.									central_nervous_system(1)	1						AAGTGCCGAGTTCTCTGCCTG	0.572												
GPD1	2819	broad.mit.edu	37	12	50500173	50500173	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:50500173G>A	uc001rvz.2	+	4	496	c.463G>A	c.(463-465)GAG>AAG	p.E155K	GPD1_uc001rwa.2_Missense_Mutation_p.E132K	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	155					glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	CATTGCCAGCGAGGTGGCTGA	0.592												
LARP4	113251	broad.mit.edu	37	12	50847269	50847269	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:50847269T>C	uc001rwp.1	+	9	975	c.831T>C	c.(829-831)TTT>TTC	p.F277F	LARP4_uc001rwo.1_Silent_p.F283F|LARP4_uc001rwq.1_Intron|LARP4_uc001rwr.1_Silent_p.F277F|LARP4_uc001rws.1_Silent_p.F276F|LARP4_uc009zlr.1_Silent_p.F96F|LARP4_uc001rwt.1_Intron|LARP4_uc001rwm.2_Silent_p.F277F|LARP4_uc001rwn.2_Silent_p.F207F	NM_052879	NP_443111	Q71RC2	LARP4_HUMAN	c-Mpl binding protein isoform a	277	RRM.						nucleotide binding|RNA binding			ovary(1)	1						TCAATACATTTTTTGCTAAGA	0.308												
DIP2B	57609	broad.mit.edu	37	12	51034587	51034587	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:51034587T>C	uc001rwv.2	+	3	409	c.253T>C	c.(253-255)TAC>CAC	p.Y85H	DIP2B_uc001rwu.2_Missense_Mutation_p.Y85H|DIP2B_uc009zls.1_5'UTR	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	85						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						TCCCTCTAAGTACCACCGAAC	0.453												
LETMD1	25875	broad.mit.edu	37	12	51449688	51449688	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:51449688A>G	uc001rxm.2	+	5	600	c.544A>G	c.(544-546)ATC>GTC	p.I182V	LETMD1_uc010smz.1_Missense_Mutation_p.I132V|LETMD1_uc010sna.1_Intron|LETMD1_uc001rxl.2_Missense_Mutation_p.I126V|LETMD1_uc009zlv.2_Intron|LETMD1_uc001rxs.2_Intron|LETMD1_uc009zlw.2_Missense_Mutation_p.I195V|LETMD1_uc001rxn.2_Missense_Mutation_p.I25V|LETMD1_uc001rxo.2_RNA|LETMD1_uc001rxp.2_Missense_Mutation_p.I65V|LETMD1_uc001rxq.2_Intron|LETMD1_uc001rxr.2_Intron|LETMD1_uc001rxt.2_Intron	NM_015416	NP_056231	Q6P1Q0	LTMD1_HUMAN	LETM1 domain containing 1 isoform 1	182	Mitochondrial intermembrane (Potential).|LETM1.					integral to membrane|mitochondrial outer membrane	protein binding			central_nervous_system(2)	2						TTTCTTAGATATCTATCATGC	0.433												
CSRNP2	81566	broad.mit.edu	37	12	51458364	51458364	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:51458364C>T	uc001rxu.1	-	5	1095	c.797G>A	c.(796-798)CGG>CAG	p.R266Q		NM_030809	NP_110436	Q9H175	CSRN2_HUMAN	TGF-beta induced apoptosis protein 12	266					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						GTAATGAGTCCGGACCCGGAT	0.602												
SLC4A8	9498	broad.mit.edu	37	12	51882561	51882561	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:51882561C>A	uc001rys.1	+	18	2543	c.2365C>A	c.(2365-2367)CCA>ACA	p.P789T	SLC4A8_uc001rym.2_Missense_Mutation_p.P736T|SLC4A8_uc001ryn.2_Missense_Mutation_p.P736T|SLC4A8_uc001ryo.2_Missense_Mutation_p.P736T|SLC4A8_uc010snj.1_Missense_Mutation_p.P816T|SLC4A8_uc001ryr.2_Missense_Mutation_p.P789T	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	789	Helical; (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		TGCAATTATCCCAGCTCTTCT	0.423												
SCN8A	6334	broad.mit.edu	37	12	52156379	52156379	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:52156379C>T	uc001ryw.2	+	15	2641	c.2463C>T	c.(2461-2463)GAC>GAT	p.D821D	SCN8A_uc010snl.1_Silent_p.D686D|SCN8A_uc001ryy.2_Silent_p.D686D	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	821	Helical; Name=S3 of repeat II; (Potential).|II.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	ACATTTTTGACGGATTTATTG	0.418												
KRT80	144501	broad.mit.edu	37	12	52566892	52566892	+	Missense_Mutation	SNP	C	C	T	rs141107117		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:52566892C>T	uc001rzx.2	-	6	985	c.887G>A	c.(886-888)CGC>CAC	p.R296H	KRT80_uc001rzw.2_Missense_Mutation_p.R331H|KRT80_uc001rzy.2_Missense_Mutation_p.R296H	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	296	Rod.|Coil 2.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		GATCTCGCTGCGGCTGCTCTG	0.652												
KRT83	3889	broad.mit.edu	37	12	52714818	52714818	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:52714818T>C	uc001saf.2	-	1	365	c.302A>G	c.(301-303)GAC>GGC	p.D101G		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	101	Head.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CGCGTTGGGGTCTATCTCCAG	0.627												
KRT82	3888	broad.mit.edu	37	12	52800051	52800051	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:52800051T>A	uc001sai.1	-	1	126	c.11A>T	c.(10-12)CAC>CTC	p.H4L		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	4	Head.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		CTGGAAAGAGTGGTACGACAT	0.577												
KRT6A	3853	broad.mit.edu	37	12	52881872	52881872	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:52881872G>A	uc001sam.2	-	8	1649	c.1440C>T	c.(1438-1440)GGC>GGT	p.G480G		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	480	Tail.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		CTTGTCCAACGCCTTCGCCAT	0.587												
TENC1	23371	broad.mit.edu	37	12	53449467	53449467	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:53449467A>G	uc001sbp.2	+	9	824	c.689A>G	c.(688-690)TAC>TGC	p.Y230C	uc001sbk.1_5'Flank|TENC1_uc001sbl.2_Missense_Mutation_p.Y106C|TENC1_uc001sbm.2_Missense_Mutation_p.Y240C|TENC1_uc001sbn.2_Missense_Mutation_p.Y240C|TENC1_uc001sbo.1_Missense_Mutation_p.Y230C|TENC1_uc001sbq.2_5'Flank|TENC1_uc001sbr.2_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	230	Phosphatase tensin-type.				intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						GTCGTACTATACTGCAAGGTG	0.607												
TENC1	23371	broad.mit.edu	37	12	53455004	53455004	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:53455004T>C	uc001sbp.2	+	20	3449	c.3314T>C	c.(3313-3315)GTC>GCC	p.V1105A	TENC1_uc001sbl.2_Missense_Mutation_p.V981A|TENC1_uc001sbn.2_Missense_Mutation_p.V1115A|TENC1_uc001sbq.2_Missense_Mutation_p.V503A|TENC1_uc001sbr.2_RNA|TENC1_uc009zmr.2_Missense_Mutation_p.V600A|TENC1_uc001sbs.2_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	1105	Pro-rich.				intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						AGTCACCATGTCACCTTCGCA	0.607												
TENC1	23371	broad.mit.edu	37	12	53456009	53456009	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:53456009G>A	uc001sbp.2	+	23	3782	c.3647G>A	c.(3646-3648)TGC>TAC	p.C1216Y	TENC1_uc001sbl.2_Missense_Mutation_p.C1092Y|TENC1_uc001sbn.2_Missense_Mutation_p.C1226Y|TENC1_uc001sbq.2_Missense_Mutation_p.C614Y|TENC1_uc001sbr.2_RNA|TENC1_uc009zmr.2_Missense_Mutation_p.C711Y|TENC1_uc001sbs.2_5'UTR	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	1216	SH2.				intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						ATCAAGGGCTGCCCCAGTGAG	0.602												
ESPL1	9700	broad.mit.edu	37	12	53671610	53671610	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:53671610T>C	uc001sck.2	+	11	2321	c.2230T>C	c.(2230-2232)TCC>CCC	p.S744P	ESPL1_uc001scj.2_Missense_Mutation_p.S419P|ESPL1_uc010soe.1_5'Flank	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	744					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						AACAGCTCAGTCCAAATGCCT	0.562												
ESPL1	9700	broad.mit.edu	37	12	53677233	53677233	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:53677233C>T	uc001sck.2	+	16	3079	c.2988C>T	c.(2986-2988)TGC>TGT	p.C996C	ESPL1_uc001scj.2_Silent_p.C671C|ESPL1_uc010soe.1_Silent_p.C207C	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	996					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						AGCTGGTCTGCCACCTGGGCC	0.507												
C12orf10	60314	broad.mit.edu	37	12	53696953	53696953	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:53696953C>T	uc001scp.3	+	3	517	c.465C>T	c.(463-465)AGC>AGT	p.S155S	C12orf10_uc010sof.1_Silent_p.S155S|C12orf10_uc009zmx.2_Silent_p.S155S|C12orf10_uc001scq.3_Silent_p.S40S	NM_021640	NP_067653	Q86UA3	Q86UA3_HUMAN	MYG1 protein precursor	155										ovary(2)	2						AAGAGGACAGCATGGTGGGCA	0.607												
HOXC8	3224	broad.mit.edu	37	12	54403221	54403221	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:54403221C>T	uc001ser.2	+	1	332	c.153C>T	c.(151-153)CAC>CAT	p.H51H		NM_022658	NP_073149	P31273	HXC8_HUMAN	homeobox C8	51						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GCTTCCAGCACGCTTCGCACC	0.662												
ITGA5	3678	broad.mit.edu	37	12	54799103	54799103	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:54799103G>A	uc001sga.2	-	12	1140	c.1072C>T	c.(1072-1074)CGG>TGG	p.R358W	ITGA5_uc010sow.1_RNA|ITGA5_uc009znp.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	358	Extracellular (Potential).|FG-GAP 5.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						TCCTGAGGCCGCCCGTCAGGG	0.647												
KIAA0748	9840	broad.mit.edu	37	12	55356581	55356581	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:55356581T>C	uc001sgn.3	-	9	1211	c.1101A>G	c.(1099-1101)GAA>GAG	p.E367E	KIAA0748_uc001sgl.3_Silent_p.E229E|KIAA0748_uc001sgm.3_Silent_p.E114E|KIAA0748_uc010spb.1_Silent_p.E114E|KIAA0748_uc010spc.1_Silent_p.E229E|KIAA0748_uc010spd.1_Silent_p.E367E|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	367										ovary(1)|central_nervous_system(1)	2						TCTGCTGTGTTTCCTCTTCAC	0.517												
ITGA7	3679	broad.mit.edu	37	12	56092633	56092633	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56092633G>A	uc001shh.2	-	6	1091	c.871C>T	c.(871-873)CGC>TGC	p.R291C	ITGA7_uc001shg.2_Missense_Mutation_p.R287C|ITGA7_uc010sps.1_Missense_Mutation_p.R194C|ITGA7_uc009znw.2_5'Flank|ITGA7_uc009znx.2_Missense_Mutation_p.R174C	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	331	FG-GAP 4.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						TGGTTGGCGCGGGGGGCTCCA	0.622												
DNAJC14	85406	broad.mit.edu	37	12	56221972	56221972	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56221972A>G	uc001shx.1	-	2	675	c.471T>C	c.(469-471)TGT>TGC	p.C157C	DNAJC14_uc001shu.1_Silent_p.C157C|DNAJC14_uc009zob.1_Silent_p.C157C|DNAJC14_uc001shy.1_Silent_p.C157C	NM_032364	NP_115740	Q6Y2X3	DJC14_HUMAN	dopamine receptor interacting protein	157					protein folding|protein transport	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|unfolded protein binding			ovary(3)|large_intestine(1)	4						CTGGAGAGGTACAGTGGTGGC	0.483												
IKZF4	64375	broad.mit.edu	37	12	56428913	56428913	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56428913T>C	uc001sjb.1	+	9	1715	c.1556T>C	c.(1555-1557)GTG>GCG	p.V519A	IKZF4_uc010sqa.1_Missense_Mutation_p.V472A|IKZF4_uc001sjc.1_Missense_Mutation_p.V519A|IKZF4_uc001sjd.1_Missense_Mutation_p.V417A|IKZF4_uc009zoi.1_Missense_Mutation_p.V474A|IKZF4_uc001sje.1_Missense_Mutation_p.V478A	NM_022465	NP_071910	Q9H2S9	IKZF4_HUMAN	zinc finger protein, subfamily 1A, 4	519					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (6;0.025)|OV - Ovarian serous cystadenocarcinoma(18;0.123)			GTGCTTCGGGTGGTGGGCGAG	0.617												
ERBB3	2065	broad.mit.edu	37	12	56481863	56481863	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56481863T>C	uc001sjh.2	+	7	984	c.791T>C	c.(790-792)GTC>GCC	p.V264A	ERBB3_uc009zoj.2_RNA|ERBB3_uc010sqb.1_Intron|ERBB3_uc010sqc.1_Missense_Mutation_p.V205A|ERBB3_uc001sji.2_5'Flank	NM_001982	NP_001973	P21860	ERBB3_HUMAN	erbB-3 isoform 1 precursor	264	Extracellular (Potential).				cranial nerve development|heart development|negative regulation of cell adhesion|negative regulation of neuron apoptosis|negative regulation of secretion|negative regulation of signal transduction|neuron apoptosis|phosphatidylinositol 3-kinase cascade|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of cell proliferation|Schwann cell differentiation|transmembrane receptor protein tyrosine kinase signaling pathway|wound healing	basolateral plasma membrane|extracellular space|integral to plasma membrane|receptor complex	ATP binding|growth factor binding|protein heterodimerization activity|protein homodimerization activity|protein tyrosine kinase activator activity|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(3)|central_nervous_system(2)|stomach(1)|ovary(1)|skin(1)	8			OV - Ovarian serous cystadenocarcinoma(18;0.112)			CAGCCTCTTGTCTACAACAAG	0.512												
PA2G4	5036	broad.mit.edu	37	12	56505008	56505008	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56505008C>A	uc001sjm.2	+	11	1399	c.980C>A	c.(979-981)CCC>CAC	p.P327H	PA2G4_uc009zol.2_Missense_Mutation_p.P327H|PA2G4_uc009zom.2_Intron	NM_006191	NP_006182	Q9UQ80	PA2G4_HUMAN	ErbB3-binding protein 1	327	Necessary for nucleolar localization.				cell cycle arrest|cell proliferation|negative regulation of transcription, DNA-dependent|regulation of translation|rRNA processing	cytoplasm|nucleolus|ribonucleoprotein complex	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding				0			OV - Ovarian serous cystadenocarcinoma(18;0.0739)			CTGCTCATGCCCAATGGCCCC	0.433												
ZC3H10	84872	broad.mit.edu	37	12	56515016	56515016	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56515016T>C	uc001sjp.1	+	3	859	c.670T>C	c.(670-672)TCA>CCA	p.S224P		NM_032786	NP_116175	Q96K80	ZC3HA_HUMAN	zinc finger CCCH-type containing 10	224							nucleic acid binding|zinc ion binding				0			OV - Ovarian serous cystadenocarcinoma(18;0.12)			TCATTTTGAGTCATATGAATA	0.547												
SMARCC2	6601	broad.mit.edu	37	12	56563585	56563585	+	Silent	SNP	G	G	A	rs148688009	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56563585G>A	uc001skb.2	-	23	2536	c.2430C>T	c.(2428-2430)TCC>TCT	p.S810S	SMARCC2_uc001skd.2_Silent_p.S841S|SMARCC2_uc001ska.2_Silent_p.S841S|SMARCC2_uc001skc.2_Silent_p.S840S|SMARCC2_uc010sqf.1_Silent_p.S730S	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	810	Glu-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			CACTCTTCTCGGACTCCTTCT	0.552												
SMARCC2	6601	broad.mit.edu	37	12	56565655	56565655	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56565655C>T	uc001skb.2	-	20	2006	c.1900G>A	c.(1900-1902)GAG>AAG	p.E634K	SMARCC2_uc001skd.2_Missense_Mutation_p.E665K|SMARCC2_uc001ska.2_Missense_Mutation_p.E665K|SMARCC2_uc001skc.2_Missense_Mutation_p.E664K|SMARCC2_uc010sqf.1_Missense_Mutation_p.E554K	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	634	SANT.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			AAGATGCACTCGTCCTGTGTG	0.542												
SMARCC2	6601	broad.mit.edu	37	12	56581046	56581046	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56581046C>T	uc001skb.2	-	2	262	c.156G>A	c.(154-156)CTG>CTA	p.L52L	SMARCC2_uc001skd.2_Silent_p.L52L|SMARCC2_uc001ska.2_Silent_p.L52L|SMARCC2_uc001skc.2_Silent_p.L52L|SMARCC2_uc010sqf.1_5'UTR	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	52					chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			ACTGTACAACCAGGCTAGACA	0.438												
SMARCC2	6601	broad.mit.edu	37	12	56583145	56583145	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56583145T>C	uc001skb.2	-	1	207	c.101A>G	c.(100-102)AAC>AGC	p.N34S	SMARCC2_uc001skd.2_Missense_Mutation_p.N34S|SMARCC2_uc001ska.2_Missense_Mutation_p.N34S|SMARCC2_uc001skc.2_Missense_Mutation_p.N34S|SMARCC2_uc010sqf.1_5'UTR	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	34					chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			CTTCTTGTAGTTCTTGCCGAG	0.498												
SLC39A5	283375	broad.mit.edu	37	12	56628733	56628733	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56628733C>T	uc010sqj.1	+	6	854	c.597C>T	c.(595-597)GGC>GGT	p.G199G	SLC39A5_uc010sqi.1_Silent_p.G90G|SLC39A5_uc010sqk.1_Silent_p.G199G	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	199	Extracellular (By similarity).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						TCTGCATCGGCGCTCCGGCCC	0.607												
PAN2	9924	broad.mit.edu	37	12	56713165	56713165	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56713165C>T	uc001skx.2	-	23	3582	c.3209G>A	c.(3208-3210)CGT>CAT	p.R1070H	PAN2_uc001skw.2_Missense_Mutation_p.R218H|PAN2_uc001skz.2_Missense_Mutation_p.R1069H|PAN2_uc001sky.2_Missense_Mutation_p.R1066H	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	1070	Exonuclease.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						AATGAGAAAACGAAGCTTTAA	0.453												
PAN2	9924	broad.mit.edu	37	12	56717655	56717655	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56717655C>T	uc001skx.2	-	14	2493	c.2120G>A	c.(2119-2121)CGA>CAA	p.R707Q	PAN2_uc001skw.2_5'UTR|PAN2_uc001skz.2_Missense_Mutation_p.R706Q|PAN2_uc001sky.2_Missense_Mutation_p.R703Q	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	707					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						GCAGATGCTTCGCTTCAGCAC	0.512												
BAZ2A	11176	broad.mit.edu	37	12	57005600	57005600	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57005600G>A	uc001slq.1	-	6	1766	c.1572C>T	c.(1570-1572)GAC>GAT	p.D524D	BAZ2A_uc001slp.1_Silent_p.D522D|BAZ2A_uc009zow.1_Silent_p.D492D	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	524					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						TCTCTTCCACGTCAGCAGTGG	0.498												
PTGES3	10728	broad.mit.edu	37	12	57060033	57060033	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57060033A>G	uc001slu.3	-	6	688	c.393T>C	c.(391-393)GGT>GGC	p.G131G	PTGES3_uc001slw.3_RNA|PTGES3_uc010sqs.1_Silent_p.G98G|PTGES3_uc001slv.3_Silent_p.G101G|PTGES3_uc010sqt.1_Intron|PTGES3_uc009zox.2_RNA	NM_006601	NP_006592	Q15185	TEBP_HUMAN	prostaglandin-E synthase 3	131	Asp/Glu-rich.				chaperone cofactor-dependent protein refolding|hormone biosynthetic process|prostaglandin biosynthetic process|signal transduction|telomere maintenance	cytosol|telomerase holoenzyme complex	prostaglandin-E synthase activity|telomerase activity|unfolded protein binding				0						CCTCATCACCACCCATGTTGT	0.294												
NACA	4666	broad.mit.edu	37	12	57107367	57107367	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57107367T>C	uc001slz.2	-	5	684	c.335A>G	c.(334-336)TAC>TGC	p.Y112C	NACA_uc001sly.2_Missense_Mutation_p.Y112C|NACA_uc009zoy.1_Missense_Mutation_p.Y1975C|NACA_uc001smc.2_Missense_Mutation_p.Y112C|NACA_uc001sma.2_Missense_Mutation_p.Y822C|NACA_uc001smb.2_Missense_Mutation_p.Y112C|NACA_uc010squ.1_RNA	NM_001113201	NP_001106672	Q13765	NACA_HUMAN	nascent polypeptide-associated complex alpha	112	NAC-A/B.				interspecies interaction between organisms|protein transport|transcription, DNA-dependent|translation	nascent polypeptide-associated complex|nucleus	DNA binding			ovary(1)	1						AGGGCTCTTGTAGACATCTGG	0.388			T	BCL6	NHL							
PRIM1	5557	broad.mit.edu	37	12	57135217	57135217	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57135217A>G	uc001smd.2	-	9	1046	c.982_splice	c.e9+1	p.G328_splice		NM_000946	NP_000937	P49642	PRI1_HUMAN	DNA primase polypeptide 1						DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	DNA primase activity|metal ion binding				0						CTTGTGTAGTACCTGTTTTAG	0.353												
GPR182	11318	broad.mit.edu	37	12	57389660	57389660	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57389660A>G	uc001smk.2	+	2	761	c.667A>G	c.(667-669)ACC>GCC	p.T223A	RDH16_uc010sqx.1_Intron	NM_007264	NP_009195	O15218	GP182_HUMAN	G protein-coupled receptor 182	223	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(1)	1						CCTGTCCACCACCATCCTGGG	0.637												
ZBTB39	9880	broad.mit.edu	37	12	57397714	57397714	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57397714A>G	uc001sml.1	-	2	1074	c.988T>C	c.(988-990)TTG>CTG	p.L330L	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	330					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						CCAAAAGCCAACTCATCCTCA	0.512												
STAT6	6778	broad.mit.edu	37	12	57499295	57499295	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57499295C>T	uc009zpe.2	-	8	1019	c.768G>A	c.(766-768)TCG>TCA	p.S256S	STAT6_uc009zpf.2_Silent_p.S256S|STAT6_uc001sna.2_Silent_p.S256S|STAT6_uc010srb.1_Silent_p.S146S|STAT6_uc010src.1_Silent_p.S146S|STAT6_uc010srd.1_Silent_p.S146S|STAT6_uc009zpg.2_Silent_p.S305S	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	256					regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						GGCCAGTCAGCGATGCCCGGG	0.612												
LRP1	4035	broad.mit.edu	37	12	57532311	57532311	+	Missense_Mutation	SNP	G	G	A	rs146149784	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57532311G>A	uc001snd.2	+	2	603	c.137G>A	c.(136-138)CGG>CAG	p.R46Q	LRP1_uc010sre.1_Missense_Mutation_p.R46Q|LRP1_uc001snb.2_Missense_Mutation_p.R46Q|LRP1_uc001snc.1_Missense_Mutation_p.R46Q	NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	46	LDL-receptor class A 1.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	AAGGGCTGGCGGTGCGACGGT	0.507												
INHBC	3626	broad.mit.edu	37	12	57843705	57843705	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57843705C>T	uc001snv.1	+	2	1086	c.959C>T	c.(958-960)ACG>ATG	p.T320M		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	320					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						TGTGTACCCACGGCCCGGCGC	0.557												
DDIT3	1649	broad.mit.edu	37	12	57910686	57910686	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57910686T>C	uc001soi.2	-	4	596	c.416A>G	c.(415-417)GAA>GGA	p.E139G	MARS_uc001sof.1_Intron|DDIT3_uc009zps.2_Missense_Mutation_p.E162G|DDIT3_uc009zpt.2_Missense_Mutation_p.E162G	NM_004083	NP_004074	P35638	DDIT3_HUMAN	DNA-damage-inducible transcript 3	139	Leucine-zipper.				cell cycle arrest|cell redox homeostasis|mRNA transcription from RNA polymerase II promoter|negative regulation of determination of dorsal identity|regulation of DNA-dependent transcription in response to stress|response to DNA damage stimulus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding		FUS/DDIT3(623)|EWSR1/DDIT3(43)	soft_tissue(666)|large_intestine(1)|central_nervous_system(1)|lung(1)|skin(1)|ovary(1)	671						CTTGAGCCGTTCATTCTCTTC	0.522			T	FUS	liposarcoma							
DDIT3	1649	broad.mit.edu	37	12	57911081	57911081	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57911081T>C	uc001soi.2	-	3	289	c.109A>G	c.(109-111)ACC>GCC	p.T37A	MARS_uc001sof.1_RNA|DDIT3_uc009zps.2_Missense_Mutation_p.T60A|DDIT3_uc009zpt.2_Missense_Mutation_p.T60A	NM_004083	NP_004074	P35638	DDIT3_HUMAN	DNA-damage-inducible transcript 3	37					cell cycle arrest|cell redox homeostasis|mRNA transcription from RNA polymerase II promoter|negative regulation of determination of dorsal identity|regulation of DNA-dependent transcription in response to stress|response to DNA damage stimulus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding		FUS/DDIT3(623)|EWSR1/DDIT3(43)	soft_tissue(666)|large_intestine(1)|central_nervous_system(1)|lung(1)|skin(1)|ovary(1)	671						GAAACATAGGTACCCCCATTT	0.473			T	FUS	liposarcoma							
KIF5A	3798	broad.mit.edu	37	12	57963058	57963058	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57963058G>A	uc001sor.1	+	10	1047	c.839G>A	c.(838-840)CGT>CAT	p.R280H	KIF5A_uc010srr.1_Missense_Mutation_p.R191H	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	280	Kinesin-motor.|Microtubule-binding.		R -> H (in SPG10; complicated form).|R -> L (in SPG10; pure form).|R -> C (in SPG10).	R->S: Strongly reduces microtubule affinity; slightly reduces gliding velocity.	blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						GTTCCATATCGTGACAGCAAA	0.458												
AGAP2	116986	broad.mit.edu	37	12	58124631	58124631	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:58124631C>T	uc001spq.2	-	11	2251	c.2251G>A	c.(2251-2253)GCC>ACC	p.A751T	AGAP2_uc001spp.2_Missense_Mutation_p.A751T|AGAP2_uc001spr.2_Missense_Mutation_p.A415T	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	751	PH.				axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						TTAATGCTGGCTGAGGGGCCA	0.592												
AVIL	10677	broad.mit.edu	37	12	58193644	58193644	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:58193644A>G	uc001sqj.1	-	18	2309	c.2280T>C	c.(2278-2280)CCT>CCC	p.P760P	AVIL_uc009zqe.1_Silent_p.P753P	NM_006576	NP_006567	O75366	AVIL_HUMAN	advillin	760	Headpiece (By similarity).|HP.				actin filament capping|cilium morphogenesis|cytoskeleton organization|positive regulation of neuron projection development	actin cytoskeleton|axon|cytoplasm	actin binding			central_nervous_system(1)	1	Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					GAACTGCTATAGGGTAATATT	0.448												
XRCC6BP1	91419	broad.mit.edu	37	12	58350647	58350647	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:58350647C>T	uc001sqp.2	+	6	755	c.715C>T	c.(715-717)CGT>TGT	p.R239C		NM_033276	NP_150592	Q9Y6H3	ATP23_HUMAN	XRCC6 binding protein 1	239					double-strand break repair via nonhomologous end joining	DNA-dependent protein kinase-DNA ligase 4 complex	DNA-dependent protein kinase activity|metal ion binding|metalloendopeptidase activity			ovary(1)	1						CTTTGAAAACCGTGATCGGTA	0.328												
USP15	9958	broad.mit.edu	37	12	62777633	62777633	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:62777633C>T	uc001src.1	+	10	1111	c.1102C>T	c.(1102-1104)CGT>TGT	p.R368C	USP15_uc001srb.1_Missense_Mutation_p.R339C	NM_006313	NP_006304	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	368					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)	3			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		ACAGGTAGGACGTTTTGCACC	0.323												
MON2	23041	broad.mit.edu	37	12	62949836	62949836	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:62949836T>C	uc001sre.2	+	25	3664	c.3273T>C	c.(3271-3273)ATT>ATC	p.I1091I	MON2_uc009zqj.2_Silent_p.I1091I|MON2_uc010ssl.1_Silent_p.I1019I|MON2_uc010ssm.1_Silent_p.I1068I|MON2_uc010ssn.1_Silent_p.I1091I|MON2_uc001srf.2_Silent_p.I854I	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	1092					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		AAGAAAAGATTGAGTCTGGAG	0.413												
AVPR1A	552	broad.mit.edu	37	12	63544060	63544060	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:63544060T>C	uc001sro.1	-	1	2531	c.557A>G	c.(556-558)TAC>TGC	p.Y186C		NM_000706	NP_000697	P37288	V1AR_HUMAN	arginine vasopressin receptor 1A	186	Helical; Name=4; (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration|generation of precursor metabolites and energy	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity				0			BRCA - Breast invasive adenocarcinoma(9;0.193)	GBM - Glioblastoma multiforme(28;0.0569)	Conivaptan(DB00872)|Desmopressin(DB00035)|Felypressin(DB00093)|Terlipressin(DB02638)|Vasopressin(DB00067)	GAAGACGAAGTACTGCGGCGT	0.647												
DPY19L2	283417	broad.mit.edu	37	12	64061918	64061918	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:64061918G>A	uc001srp.1	-	1	437	c.256C>T	c.(256-258)CGT>TGT	p.R86C	DPY19L2_uc009zqk.1_RNA	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	86					multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		AGGGAATTACGGACGAACTGG	0.607												
HELB	92797	broad.mit.edu	37	12	66704385	66704385	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:66704385T>C	uc001sti.2	+	4	1705	c.1677T>C	c.(1675-1677)TGT>TGC	p.C559C	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	559					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		ACACACTGTGTCAGGTAAAAC	0.308												
CAND1	55832	broad.mit.edu	37	12	67691600	67691600	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:67691600A>G	uc001stn.2	+	6	1258	c.821A>G	c.(820-822)TAC>TGC	p.Y274C	CAND1_uc001sto.2_5'Flank	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	274	HEAT 7.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		TTAAGAGAGTACTGTATTCAA	0.289												
CAND1	55832	broad.mit.edu	37	12	67692747	67692747	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:67692747A>G	uc001stn.2	+	7	1309	c.872A>G	c.(871-873)TAT>TGT	p.Y291C	CAND1_uc001sto.2_Translation_Start_Site	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	291	HEAT 8.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		AAGGAAGTATATCCTCATGTT	0.264												
DYRK2	8445	broad.mit.edu	37	12	68051408	68051408	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:68051408G>A	uc001str.3	+	3	1123	c.721G>A	c.(721-723)GAT>AAT	p.D241N	DYRK2_uc001sts.3_Missense_Mutation_p.D168N	NM_006482	NP_006473	Q92630	DYRK2_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	241	Protein kinase.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|positive regulation of glycogen biosynthetic process|smoothened signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|manganese ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(1)|central_nervous_system(1)	4			Lung(24;6.81e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(7;0.000573)		CAAGGCCTACGATCACAAAGT	0.577												
DYRK2	8445	broad.mit.edu	37	12	68052075	68052075	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:68052075G>A	uc001str.3	+	3	1790	c.1388G>A	c.(1387-1389)CGT>CAT	p.R463H	DYRK2_uc001sts.3_Missense_Mutation_p.R390H	NM_006482	NP_006473	Q92630	DYRK2_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	463	Protein kinase.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|positive regulation of glycogen biosynthetic process|smoothened signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|manganese ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(1)|central_nervous_system(1)	4			Lung(24;6.81e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(7;0.000573)		GGTTATCCCCGTTACTGCACT	0.557												
IL26	55801	broad.mit.edu	37	12	68619014	68619014	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:68619014A>G	uc001stx.1	-	3	313	c.278T>C	c.(277-279)GTT>GCT	p.V93A		NM_018402	NP_060872	Q9NPH9	IL26_HUMAN	interleukin 26 precursor	93					cell-cell signaling|negative regulation of epithelial cell proliferation|positive regulation of cytokine secretion|positive regulation of ERK1 and ERK2 cascade|positive regulation of JAK-STAT cascade|positive regulation of protein kinase B signaling cascade|positive regulation of stress-activated MAPK cascade|positive regulation of transcription from RNA polymerase II promoter	cytosol|extracellular space|soluble fraction	cytokine activity				0			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000515)		TTGACCAAAAACGTCTTCCAT	0.358												
MDM1	56890	broad.mit.edu	37	12	68720795	68720795	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:68720795G>A	uc001stz.2	-	3	276	c.140C>T	c.(139-141)ACG>ATG	p.T47M	MDM1_uc010stc.1_Missense_Mutation_p.T47M|MDM1_uc009zqv.1_Intron|MDM1_uc001sua.3_Missense_Mutation_p.T47M|MDM1_uc010std.1_3'UTR	NM_017440	NP_059136	Q8TC05	MDM1_HUMAN	mouse Mdm1 nuclear protein homolog isoform 1	47						nucleus				ovary(3)|skin(2)	5			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000174)		TGGCTCTTTCGTGATGCCTAC	0.363												
MDM2	4193	broad.mit.edu	37	12	69233299	69233299	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:69233299T>C	uc001sui.2	+	11	1451	c.1164T>C	c.(1162-1164)ATT>ATC	p.I388I	MDM2_uc009zri.2_Silent_p.I343I|MDM2_uc009zqx.2_Silent_p.I333I|MDM2_uc009zqw.2_Intron|MDM2_uc001suk.2_Intron|MDM2_uc001sun.3_Silent_p.I207I|MDM2_uc009zqz.2_Silent_p.I335I|MDM2_uc009zra.2_Silent_p.I186I|MDM2_uc001sum.1_Intron|MDM2_uc009zrd.2_Silent_p.I72I|MDM2_uc009zrc.2_Silent_p.I72I|MDM2_uc009zre.2_Silent_p.I129I|MDM2_uc009zrf.2_Silent_p.I72I|MDM2_uc001suo.2_Silent_p.I182I|MDM2_uc009zrg.2_Silent_p.I104I|MDM2_uc009zrh.2_Silent_p.I156I	NM_002392	NP_002383	Q00987	MDM2_HUMAN	mouse double minute 2 homolog isoform MDM2	382	Necessary for interaction with USP2.				cellular response to hypoxia|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|establishment of protein localization|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell cycle arrest|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell proliferation|positive regulation of mitotic cell cycle|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein complex assembly|protein destabilization|protein localization to nucleus|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to antibiotic|synaptic transmission	cytosol|endocytic vesicle membrane|insoluble fraction|nucleolus|nucleoplasm|plasma membrane|protein complex	enzyme binding|identical protein binding|p53 binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|central_nervous_system(1)	3	all_cancers(1;8.46e-121)|all_epithelial(5;3.21e-36)|Lung NSC(4;2.16e-33)|all_lung(4;3.03e-31)|Glioma(1;1.9e-09)|Breast(13;1.59e-06)|all_neural(1;1.03e-05)|Melanoma(1;0.0171)|Renal(347;0.0684)		all cancers(2;8.67e-65)|GBM - Glioblastoma multiforme(2;8.89e-62)|BRCA - Breast invasive adenocarcinoma(5;2.43e-08)|Lung(24;1.5e-05)|LUAD - Lung adenocarcinoma(15;8.5e-05)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			ATGATAAAATTACACAAGCTT	0.353			A		sarcoma|glioma|colorectal|other							
LGR5	8549	broad.mit.edu	37	12	71976241	71976241	+	Missense_Mutation	SNP	C	C	T	rs145133989		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:71976241C>T	uc001swl.2	+	17	1606	c.1558C>T	c.(1558-1560)CGT>TGT	p.R520C	LGR5_uc001swm.2_Missense_Mutation_p.R496C|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	520	Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TGCAGATGAACGTGACCTTGA	0.463												
ZFC3H1	196441	broad.mit.edu	37	12	72008422	72008422	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:72008422T>A	uc001swo.2	-	30	5778	c.5419A>T	c.(5419-5421)AAA>TAA	p.K1807*		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	1807	HAT 5.				RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						GTAAAAAATTTGAATTCTTGA	0.338												
CAPS2	84698	broad.mit.edu	37	12	75685541	75685541	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:75685541A>G	uc001sxk.3	-	14	1477	c.1280T>C	c.(1279-1281)GTC>GCC	p.V427A	CAPS2_uc001sxm.3_Missense_Mutation_p.V195A|CAPS2_uc009zsa.2_Missense_Mutation_p.V17A|CAPS2_uc001sxi.3_Missense_Mutation_p.V163A|CAPS2_uc001sxj.3_Missense_Mutation_p.V338A|CAPS2_uc001sxl.3_Missense_Mutation_p.V408A	NM_032606	NP_115995	Q9BXY5	CAYP2_HUMAN	calcyphosine 2	427							calcium ion binding			ovary(2)	2						TGCTTTGAAGACCAGCCTATC	0.323												
E2F7	144455	broad.mit.edu	37	12	77440086	77440086	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:77440086A>G	uc001sym.3	-	5	797	c.561T>C	c.(559-561)TAT>TAC	p.Y187Y	E2F7_uc001syn.2_Silent_p.Y187Y	NM_203394	NP_976328	Q96AV8	E2F7_HUMAN	E2F transcription factor 7	187	Potential.				cell cycle	transcription factor complex	DNA binding|identical protein binding			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3						TTACAATGTCATAGATGCGTC	0.493												
E2F7	144455	broad.mit.edu	37	12	77449892	77449892	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:77449892G>A	uc001sym.3	-	3	348	c.112C>T	c.(112-114)CGA>TGA	p.R38*	E2F7_uc001syn.2_Nonsense_Mutation_p.R38*	NM_203394	NP_976328	Q96AV8	E2F7_HUMAN	E2F transcription factor 7	38					cell cycle	transcription factor complex	DNA binding|identical protein binding			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3						ATCCTTGATCGATCAACAAAT	0.333												
NAV3	89795	broad.mit.edu	37	12	78562562	78562562	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:78562562A>G	uc001syp.2	+	24	5070	c.4897A>G	c.(4897-4899)ACC>GCC	p.T1633A	NAV3_uc001syo.2_Missense_Mutation_p.T1633A|NAV3_uc010sub.1_Missense_Mutation_p.T1119A|NAV3_uc009zsf.2_Missense_Mutation_p.T464A	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1633	Potential.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ACTAAGAGAAACCATTGAAAT	0.408										HNSCC(70;0.22)		
LIN7A	8825	broad.mit.edu	37	12	81239535	81239535	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:81239535C>T	uc001szj.1	-	4	650	c.457G>A	c.(457-459)GAC>AAC	p.D153N	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	153	PDZ.				exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						AGCAGCTGGTCTCCTCTTTTG	0.423												
PPFIA2	8499	broad.mit.edu	37	12	81675044	81675044	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:81675044A>G	uc001szo.1	-	27	3365	c.3204T>C	c.(3202-3204)AGT>AGC	p.S1068S	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	967										ovary(3)|lung(2)|pancreas(1)	6						ACCGATGGAAACTATCCACCA	0.313												
PPFIA2	8499	broad.mit.edu	37	12	81688654	81688654	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:81688654A>G	uc001szo.1	-	24	3046	c.2885T>C	c.(2884-2886)GTT>GCT	p.V962A	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	888										ovary(3)|lung(2)|pancreas(1)	6						TGTTAGGGAAACCATCTCCTG	0.468												
TMTC2	160335	broad.mit.edu	37	12	83290084	83290084	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:83290084T>C	uc001szt.2	+	3	1574	c.1142T>C	c.(1141-1143)GTA>GCA	p.V381A	TMTC2_uc001szr.1_Missense_Mutation_p.V381A|TMTC2_uc001szs.1_Missense_Mutation_p.V381A|TMTC2_uc010suk.1_Missense_Mutation_p.V136A	NM_152588	NP_689801	Q8N394	TMTC2_HUMAN	transmembrane and tetratricopeptide repeat	381						endoplasmic reticulum|integral to membrane	binding			ovary(2)	2						AAAAACGATGTATCACAGAGA	0.403												
SLC6A15	55117	broad.mit.edu	37	12	85279318	85279318	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:85279318T>C	uc001szv.2	-	4	963	c.470A>G	c.(469-471)TAC>TGC	p.Y157C	SLC6A15_uc010sul.1_Missense_Mutation_p.Y50C|SLC6A15_uc001szy.2_Missense_Mutation_p.Y157C	NM_182767	NP_877499	Q9H2J7	S6A15_HUMAN	solute carrier family 6, member 15 isoform 1	157	Helical; Name=3; (Potential).				cellular nitrogen compound metabolic process|leucine transport|proline transport	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			pancreas(2)|ovary(1)	3						GACGTTGTAGTAGAGAGCTAC	0.368												
LRRIQ1	84125	broad.mit.edu	37	12	85439837	85439837	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:85439837A>G	uc001tac.2	+	5	487	c.376A>G	c.(376-378)AAA>GAA	p.K126E	LRRIQ1_uc001tab.1_Missense_Mutation_p.K126E|LRRIQ1_uc001taa.1_Missense_Mutation_p.K126E|LRRIQ1_uc001tad.2_Missense_Mutation_p.K34E	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	126										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TATGAGAAGTAAAACCGATTG	0.348												
C12orf29	91298	broad.mit.edu	37	12	88436611	88436611	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:88436611A>G	uc001tao.2	+	3	376	c.218A>G	c.(217-219)TAC>TGC	p.Y73C	C12orf29_uc001tap.2_RNA|C12orf29_uc009zsk.2_RNA	NM_001009894	NP_001009894	Q8N999	CL029_HUMAN	hypothetical protein LOC91298	73											0						GATCAGCCATACCTTTGGGCT	0.303												
KITLG	4254	broad.mit.edu	37	12	88939540	88939540	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:88939540C>A	uc001tav.2	-	2	301	c.118G>T	c.(118-120)GTC>TTC	p.V40F	KITLG_uc001taw.2_Missense_Mutation_p.V40F	NM_000899	NP_000890	P21583	SCF_HUMAN	KIT ligand isoform b precursor	40	Extracellular (Potential).				cell adhesion|cell proliferation|hemopoiesis|male gonad development|positive regulation of DNA replication|signal transduction	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	growth factor activity|identical protein binding|stem cell factor receptor binding			ovary(1)	1						AATTTAGTGACGTCTTTTACA	0.373									Testicular_Cancer_Familial_Clustering_of			
PLXNC1	10154	broad.mit.edu	37	12	94654559	94654559	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:94654559C>T	uc001tdc.2	+	20	3642	c.3393C>T	c.(3391-3393)TCC>TCT	p.S1131S	PLXNC1_uc010sut.1_Silent_p.S178S|PLXNC1_uc009zsv.2_5'Flank	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1131	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						GCACGGAGTCCGTCGTCGAAA	0.512												
FGD6	55785	broad.mit.edu	37	12	95488366	95488366	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:95488366A>G	uc001tdp.3	-	15	3824	c.3600_splice	c.e15+1	p.E1200_splice	FGD6_uc009zsx.2_Splice_Site_p.E333_splice|FGD6_uc001tdq.1_Splice_Site_p.E236_splice	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6						actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						AGAAAACAATACCTCATCAAG	0.373												
FGD6	55785	broad.mit.edu	37	12	95546740	95546740	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:95546740A>G	uc001tdp.3	-	4	2840	c.2616T>C	c.(2614-2616)GTT>GTC	p.V872V	FGD6_uc009zsx.2_Silent_p.V5V	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	872	DH.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						CAATATGATGAACTTTACTTT	0.353												
USP44	84101	broad.mit.edu	37	12	95927368	95927368	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:95927368G>A	uc001teg.2	-	2	809	c.665C>T	c.(664-666)TCG>TTG	p.S222L	USP44_uc001teh.2_Missense_Mutation_p.S222L|USP44_uc009zte.2_Missense_Mutation_p.S219L	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	222					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						TATTATGGTCGACTGAGCGAG	0.403												
CCDC38	120935	broad.mit.edu	37	12	96263270	96263270	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:96263270T>C	uc001tek.1	-	15	1800	c.1566A>G	c.(1564-1566)CAA>CAG	p.Q522Q		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	522	Potential.									skin(1)	1						TTTTCTTTGGTTGTGCTACTG	0.348												
LTA4H	4048	broad.mit.edu	37	12	96407035	96407035	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:96407035A>G	uc001ten.1	-	14	1378	c.1310T>C	c.(1309-1311)GTT>GCT	p.V437A	LTA4H_uc010suy.1_Missense_Mutation_p.V399A|LTA4H_uc010suz.1_Missense_Mutation_p.V399A|LTA4H_uc010sva.1_RNA|LTA4H_uc009ztj.2_RNA	NM_000895	NP_000886	P09960	LKHA4_HUMAN	leukotriene A4 hydrolase	437					hormone biosynthetic process|inflammatory response|leukotriene biosynthetic process|peptide catabolic process|prostanoid metabolic process|proteolysis	cytosol|nucleus	aminopeptidase activity|epoxide hydrolase activity|leukotriene-A4 hydrolase activity|metallopeptidase activity|protein binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(1)	1						GAGAACATCAACCTATGAATA	0.363												
FAM71C	196472	broad.mit.edu	37	12	100042499	100042499	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:100042499A>G	uc001tgn.2	+	1	969	c.547A>G	c.(547-549)ACC>GCC	p.T183A	ANKS1B_uc001tge.1_Intron|ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Intron	NM_153364	NP_699195	Q8NEG0	FA71C_HUMAN	hypothetical protein LOC196472	183											0				OV - Ovarian serous cystadenocarcinoma(2;0.00733)|Epithelial(2;0.0385)|all cancers(2;0.19)		TTACAGTGATACCAGGGCTAT	0.512												
NR1H4	9971	broad.mit.edu	37	12	100930827	100930827	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:100930827T>C	uc001tht.1	+	6	989	c.961_splice	c.e6+2	p.G321_splice	NR1H4_uc001thp.1_Splice_Site_p.G307_splice|NR1H4_uc001thq.1_Splice_Site_p.G311_splice|NR1H4_uc010svj.1_Splice_Site|NR1H4_uc001thr.1_Splice_Site_p.G311_splice|NR1H4_uc010svk.1_Splice_Site_p.G260_splice|NR1H4_uc001ths.1_Splice_Site_p.G317_splice	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4						bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						AGCTACCAGGTATTTTTTAaa	0.174												
ANO4	121601	broad.mit.edu	37	12	101336279	101336279	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:101336279A>G	uc010svm.1	+	5	994	c.422A>G	c.(421-423)AAC>AGC	p.N141S	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.N106S|ANO4_uc001thx.2_Missense_Mutation_p.N141S	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	141	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TTTGAAAGAAACATTAGAGCA	0.343										HNSCC(74;0.22)		
ANO4	121601	broad.mit.edu	37	12	101381332	101381332	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:101381332A>G	uc010svm.1	+	8	1190	c.618A>G	c.(616-618)ATA>ATG	p.I206M	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.I171M|ANO4_uc001thx.2_Missense_Mutation_p.I206M	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	206	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ATAAACAAATAAGCAGGTTTC	0.517										HNSCC(74;0.22)	OREG0022059	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
GNPTAB	79158	broad.mit.edu	37	12	102158613	102158613	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:102158613T>C	uc001tit.2	-	13	2261	c.2082A>G	c.(2080-2082)AAA>AAG	p.K694K		NM_024312	NP_077288	Q3T906	GNPTA_HUMAN	N-acetylglucosamine-1-phosphate transferase	694					cell differentiation	Golgi membrane|integral to membrane|nucleus	metal ion binding|transcription factor binding|UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity			ovary(1)|skin(1)	2						CCAGGGGAATTTTCACCTCTT	0.423												
PAH	5053	broad.mit.edu	37	12	103306669	103306669	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:103306669C>A	uc001tjq.1	-	3	540	c.68G>T	c.(67-69)AGC>ATC	p.S23I	PAH_uc010swc.1_Missense_Mutation_p.S23I	NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	23					catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	TTCAATATAGCTTGTTTCCTA	0.373												
STAB2	55576	broad.mit.edu	37	12	104067847	104067847	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:104067847A>G	uc001tjw.2	+	23	2720	c.2534A>G	c.(2533-2535)TAC>TGC	p.Y845C		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	845	Extracellular (Potential).|EGF-like 7.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						ACCTGTGAATACAGCAATGGG	0.547												
HSP90B1	7184	broad.mit.edu	37	12	104340627	104340627	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:104340627C>T	uc001tkb.1	+	16	2275	c.2170C>T	c.(2170-2172)CGG>TGG	p.R724W	HSP90B1_uc010swg.1_Missense_Mutation_p.R389W|HSP90B1_uc009zui.1_Intron	NM_003299	NP_003290	P14625	ENPL_HUMAN	heat shock protein 90kDa beta, member 1	724					actin rod assembly|anti-apoptosis|cellular response to ATP|ER-associated protein catabolic process|protein folding|protein transport|regulation of phosphoprotein phosphatase activity|response to hypoxia|sequestering of calcium ion	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|melanosome|microsome|midbody|perinuclear region of cytoplasm	ATP binding|calcium ion binding|low-density lipoprotein particle receptor binding|protein phosphatase binding|RNA binding|unfolded protein binding|virion binding			ovary(2)|skin(1)	3					Rifabutin(DB00615)	AGCAACGCTTCGGTCAGGGTA	0.368												
GLT8D2	83468	broad.mit.edu	37	12	104388210	104388210	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:104388210A>G	uc001tkh.1	-	9	1076	c.670T>C	c.(670-672)TGC>CGC	p.C224R	GLT8D2_uc001tki.1_Missense_Mutation_p.C224R	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	224	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						TTGAAAGAGCAGGTGCTGGGG	0.478												
APPL2	55198	broad.mit.edu	37	12	105622983	105622983	+	Missense_Mutation	SNP	C	C	T	rs143353224		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:105622983C>T	uc001tlf.1	-	2	291	c.73G>A	c.(73-75)GTG>ATG	p.V25M	APPL2_uc010swt.1_Translation_Start_Site|APPL2_uc001tlg.1_Translation_Start_Site|APPL2_uc010swu.1_Missense_Mutation_p.V25M|APPL2_uc009zuq.2_Translation_Start_Site	NM_018171	NP_060641	Q8NEU8	DP13B_HUMAN	adaptor protein, phosphotyrosine interaction, PH	25	Required for RAB5A binding (By similarity).				cell cycle|cell proliferation|signal transduction	early endosome membrane|nucleus	protein binding			upper_aerodigestive_tract(1)	1						TCTTCAAACACGCTCAGTAAA	0.502												
CKAP4	10970	broad.mit.edu	37	12	106633587	106633587	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:106633587C>T	uc001tlk.2	-	2	1108	c.1024G>A	c.(1024-1026)GCC>ACC	p.A342T		NM_006825	NP_006816	Q07065	CKAP4_HUMAN	cytoskeleton-associated protein 4	342	Potential.					ER-Golgi intermediate compartment membrane|integral to membrane|membrane fraction					0						TCCGTGTCGGCCGCCTCCTTG	0.637												
RIC8B	55188	broad.mit.edu	37	12	107208622	107208622	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:107208622G>A	uc001tlx.2	+	3	406	c.281G>A	c.(280-282)CGA>CAA	p.R94Q	RIC8B_uc001tlw.2_Missense_Mutation_p.R94Q|RIC8B_uc001tly.2_Missense_Mutation_p.R54Q|RIC8B_uc001tlz.2_RNA	NM_018157	NP_060627	Q9NVN3	RIC8B_HUMAN	resistance to inhibitors of cholinesterase 8	94					regulation of G-protein coupled receptor protein signaling pathway	cell cortex|cytosol|plasma membrane	G-protein alpha-subunit binding|guanyl-nucleotide exchange factor activity			ovary(1)	1						ATACTGCTGCGACTAGCCAAG	0.398												
CRY1	1407	broad.mit.edu	37	12	107386601	107386601	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:107386601A>G	uc001tmi.3	-	12	2584	c.1725T>C	c.(1723-1725)AGT>AGC	p.S575S		NM_004075	NP_004066	Q16526	CRY1_HUMAN	cryptochrome 1 (photolyase-like)	575					DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	blue light photoreceptor activity|DNA photolyase activity|double-stranded DNA binding|nucleotide binding|protein binding			ovary(3)	3						TAGGACCAATACTCTGTGTGT	0.368												
SART3	9733	broad.mit.edu	37	12	108941702	108941702	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:108941702C>T	uc001tmz.1	-	3	740	c.505G>A	c.(505-507)GTG>ATG	p.V169M	SART3_uc009zux.1_Translation_Start_Site|SART3_uc010swx.1_Missense_Mutation_p.V169M|SART3_uc010swy.1_Missense_Mutation_p.V37M|SART3_uc010swz.1_Missense_Mutation_p.V169M|SART3_uc001tna.1_RNA	NM_014706	NP_055521	Q15020	SART3_HUMAN	squamous cell carcinoma antigen recognized by T	169	HAT 2.				RNA processing	cytoplasm|nuclear speck	nucleotide binding|protein binding|RNA binding			pancreas(1)	1						AGGTCATACACGTGCTCTCTG	0.463									Porokeratosis			
USP30	84749	broad.mit.edu	37	12	109520724	109520724	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:109520724A>G	uc010sxi.1	+	11	1129	c.1025A>G	c.(1024-1026)CAC>CGC	p.H342R	USP30_uc001tnu.3_Missense_Mutation_p.H311R|USP30_uc001tnw.3_Missense_Mutation_p.H59R	NM_032663	NP_116052	Q70CQ3	UBP30_HUMAN	ubiquitin specific peptidase 30	342	Cytoplasmic (Potential).				ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial outer membrane	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(1)	1						CGGCATGAGCACGTGCAGTTC	0.537												
ACACB	32	broad.mit.edu	37	12	109685423	109685423	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:109685423C>A	uc001tob.2	+	40	5703	c.5584C>A	c.(5584-5586)CTG>ATG	p.L1862M	ACACB_uc001toc.2_Missense_Mutation_p.L1862M|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Missense_Mutation_p.L528M	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1862	Carboxyltransferase.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	ATTTAAATACCTGTACCTGAC	0.423												
KCTD10	83892	broad.mit.edu	37	12	109898554	109898554	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:109898554G>C	uc001toi.1	-	3	362	c.274C>G	c.(274-276)CGA>GGA	p.R92G	KCTD10_uc001toh.1_5'Flank|KCTD10_uc009zvi.1_Missense_Mutation_p.R89G|KCTD10_uc001toj.1_Missense_Mutation_p.R100G|KCTD10_uc001tok.1_Intron	NM_031954	NP_114160	Q9H3F6	BACD3_HUMAN	potassium channel tetramerisation domain	92	BTB.				proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination	Cul3-RING ubiquitin ligase complex|cytoplasm|nucleus|voltage-gated potassium channel complex	voltage-gated potassium channel activity				0						GCCCCGTCTCGAAGGTAGTTG	0.597												
TRPV4	59341	broad.mit.edu	37	12	110226519	110226519	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:110226519G>A	uc001tpj.1	-	12	1989	c.1894C>T	c.(1894-1896)CTG>TTG	p.L632L	TRPV4_uc001tpg.1_Silent_p.L598L|TRPV4_uc001tph.1_Silent_p.L585L|TRPV4_uc001tpi.1_Silent_p.L525L|TRPV4_uc001tpk.1_Silent_p.L632L|TRPV4_uc001tpl.1_Silent_p.L572L	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	632	Helical; (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						AGGGAGACCAGGGCTGTGGGA	0.453												
PPTC7	160760	broad.mit.edu	37	12	110989605	110989605	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:110989605A>G	uc001trh.1	-	2	620	c.392T>C	c.(391-393)GTC>GCC	p.V131A		NM_139283	NP_644812	Q8NI37	PPTC7_HUMAN	T-cell activation protein phosphatase 2C	131	PP2C-like.						metal ion binding|phosphoprotein phosphatase activity				0						GAGCAAAGGGACTTTATTTTG	0.408												
TCTN1	79600	broad.mit.edu	37	12	111057695	111057695	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:111057695G>A	uc009zvs.2	+	2	383	c.275G>A	c.(274-276)TGC>TAC	p.C92Y	TCTN1_uc010syb.1_Missense_Mutation_p.C92Y|TCTN1_uc009zvr.1_RNA|TCTN1_uc001trl.2_RNA|TCTN1_uc001trm.2_Missense_Mutation_p.C32Y|TCTN1_uc010syc.1_RNA|TCTN1_uc001tro.2_RNA|TCTN1_uc001trp.3_Missense_Mutation_p.C92Y|TCTN1_uc001trn.3_Missense_Mutation_p.C92Y|TCTN1_uc001tri.2_Missense_Mutation_p.C36Y|TCTN1_uc001trj.1_Missense_Mutation_p.C36Y|TCTN1_uc001trk.3_RNA	NM_001082537	NP_001076006	Q2MV58	TECT1_HUMAN	tectonic family member 1 isoform 2	92	Cys-rich.				multicellular organismal development	extracellular region					0						ATCAACTGCTGCTGTGATCCC	0.473												
CCDC63	160762	broad.mit.edu	37	12	111317711	111317711	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:111317711T>C	uc001trv.1	+	6	686	c.491T>C	c.(490-492)GTC>GCC	p.V164A	CCDC63_uc009zvt.1_Intron|CCDC63_uc010sye.1_Missense_Mutation_p.V124A|CCDC63_uc001trw.1_Missense_Mutation_p.V79A	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	164	Potential.									skin(6)|ovary(1)|pancreas(1)	8						TTTCAACAGGTCACTGTTCAC	0.473												
MYL2	4633	broad.mit.edu	37	12	111356998	111356998	+	Splice_Site	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:111356998C>A	uc001try.3	-	2	75	c.4_splice	c.e2-1	p.A2_splice	MYL2_uc001trx.3_Translation_Start_Site	NM_000432	NP_000423	P10916	MLRV_HUMAN	slow cardiac myosin regulatory light chain 2						cardiac myofibril assembly|heart contraction|muscle filament sliding|negative regulation of cell growth|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	cytosol|myosin complex|sarcomere	actin monomer binding|calcium ion binding|myosin heavy chain binding|structural constituent of muscle			ovary(1)	1						TCTTAGGTGCCTGGGGGAAAA	0.517												
ACAD10	80724	broad.mit.edu	37	12	112193508	112193508	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:112193508G>A	uc001tsq.2	+	20	3198	c.2998G>A	c.(2998-3000)GCC>ACC	p.A1000T	ACAD10_uc009zvx.2_Missense_Mutation_p.A1031T|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	1000							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						TAAAATGGTCGCCCCGTCCAT	0.527												
MAPKAPK5	8550	broad.mit.edu	37	12	112305379	112305379	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:112305379C>T	uc001tta.2	+	4	449	c.190C>T	c.(190-192)CGT>TGT	p.R64C	MAPKAPK5_uc001tsz.2_Missense_Mutation_p.R64C|MAPKAPK5_uc001ttb.2_Translation_Start_Site	NM_139078	NP_620777	Q8IW41	MAPK5_HUMAN	MAP kinase-activated protein kinase 5 isoform 2	64	Protein kinase.				signal transduction	cytoplasm|nucleus	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)	3						CTTTAAGGTACGTCTGCACAT	0.403												
ERP29	10961	broad.mit.edu	37	12	112460247	112460247	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:112460247G>A	uc001ttk.1	+	3	695	c.577G>A	c.(577-579)GAG>AAG	p.E193K	ERP29_uc001ttl.1_3'UTR	NM_006817	NP_006808	P30040	ERP29_HUMAN	endoplasmic reticulum protein 29 isoform 1	193					intracellular protein transport|protein folding|protein secretion	endoplasmic reticulum lumen|melanosome	protein disulfide isomerase activity				0						AAGTGTGAAGGAGACTCAGAA	0.572												
RPH3A	22895	broad.mit.edu	37	12	113306354	113306354	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:113306354A>G	uc010syl.1	+	8	926	c.564A>G	c.(562-564)GAA>GAG	p.E188E	RPH3A_uc001ttz.2_Silent_p.E188E|RPH3A_uc001tty.2_Silent_p.E184E|RPH3A_uc009zwe.1_Silent_p.E184E|RPH3A_uc010sym.1_Silent_p.E139E|RPH3A_uc001tua.2_5'UTR	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	188	Pro-rich.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		CTGCCCCTGAACAGCCTGCTC	0.577												
OAS1	4938	broad.mit.edu	37	12	113354471	113354471	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:113354471A>G	uc001tud.2	+	4	918	c.812A>G	c.(811-813)TAC>TGC	p.Y271C	OAS1_uc010syn.1_Missense_Mutation_p.Y270C|OAS1_uc010syo.1_3'UTR|OAS1_uc001tub.2_Missense_Mutation_p.Y271C|OAS1_uc001tuc.2_Missense_Mutation_p.Y271C|OAS1_uc009zwf.2_Missense_Mutation_p.Y270C	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	271					interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						CTCTGCATCTACTGGACAAAG	0.453												
DTX1	1840	broad.mit.edu	37	12	113532900	113532900	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:113532900T>C	uc001tuk.1	+	7	1776	c.1440T>C	c.(1438-1440)GGT>GGC	p.G480G		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	480					negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						AGAAGACGGGTACGCAGCCGC	0.647												
DDX54	79039	broad.mit.edu	37	12	113612693	113612693	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:113612693T>C	uc001tup.2	-	9	951	c.923A>G	c.(922-924)AAC>AGC	p.N308S	DDX54_uc001tuq.3_Missense_Mutation_p.N308S	NM_024072	NP_076977	Q8TDD1	DDX54_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	308					estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nucleolus	ATP binding|ATP-dependent RNA helicase activity|estrogen receptor binding|RNA binding|transcription corepressor activity			skin(2)|central_nervous_system(1)	3						CAGCTGCTCGTTGAGCTTGGT	0.627											OREG0022139	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
IQCD	115811	broad.mit.edu	37	12	113645894	113645894	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:113645894T>C	uc001tuv.1	-	2	500	c.78A>G	c.(76-78)CCA>CCG	p.P26P	IQCD_uc001tuu.2_Silent_p.P26P	NM_138451	NP_612460	Q96DY2	IQCD_HUMAN	IQ motif containing D	26										ovary(1)	1						GCCTTTTAGATGGGTCTGTCT	0.517												
TPCN1	53373	broad.mit.edu	37	12	113723763	113723763	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:113723763A>G	uc001tuw.2	+	18	1820	c.1523A>G	c.(1522-1524)AAC>AGC	p.N508S	TPCN1_uc001tux.2_Missense_Mutation_p.N580S|TPCN1_uc010syt.1_Missense_Mutation_p.N440S	NM_017901	NP_060371	Q9ULQ1	TPC1_HUMAN	two pore segment channel 1 isoform 2	508	Helical; Name=S3 of repeat II; (Potential).					endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated ion channel activity			skin(2)|ovary(1)	3						TCCGGATGGAACTTGTGAGTG	0.567												
TPCN1	53373	broad.mit.edu	37	12	113730874	113730874	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:113730874A>G	uc001tuw.2	+	26	2546	c.2249A>G	c.(2248-2250)TAC>TGC	p.Y750C	TPCN1_uc001tux.2_Missense_Mutation_p.Y822C|TPCN1_uc010syu.1_5'Flank	NM_017901	NP_060371	Q9ULQ1	TPC1_HUMAN	two pore segment channel 1 isoform 2	750	Cytoplasmic (Potential).					endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated ion channel activity			skin(2)|ovary(1)	3						ATGGAGAGATACCAGGTGAGG	0.587												
RBM19	9904	broad.mit.edu	37	12	114397151	114397151	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:114397151G>A	uc009zwi.2	-	5	581	c.437C>T	c.(436-438)GCA>GTA	p.A146V	RBM19_uc001tvn.3_Missense_Mutation_p.A146V|RBM19_uc001tvm.2_Missense_Mutation_p.A146V	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	146					multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					CCAAGTGGCTGCCTGCGCCCG	0.597												
TBX5	6910	broad.mit.edu	37	12	114841604	114841604	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:114841604C>G	uc001tvo.2	-	2	595	c.100G>C	c.(100-102)GCC>CCC	p.A34P	TBX5_uc001tvp.2_Missense_Mutation_p.A34P|TBX5_uc001tvq.2_Intron|TBX5_uc010syv.1_Missense_Mutation_p.A34P	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	34				GFGLAHTPLEPDAKDLPCDSKPESALGAPSKSPSSPQAAFT QQ -> ALAGAHLWSLTQKTCLRFEPRARSGPPASPPGRPR SRLHPA (in Ref. 1; CAA70592).	cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		TTGCTGGGGGCCCCGAGCGCG	0.657												
TBX3	6926	broad.mit.edu	37	12	115117308	115117308	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:115117308A>G	uc001tvt.1	-	4	1828	c.864_splice	c.e4+1	p.K288_splice	TBX3_uc001tvu.1_Splice_Site_p.K268_splice	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2						anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		CCTTGAGTTTACCTTATCATT	0.413												
MED13L	23389	broad.mit.edu	37	12	116457117	116457117	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:116457117A>G	uc001tvw.2	-	7	976	c.921T>C	c.(919-921)GTT>GTC	p.V307V		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	307					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		CTTGCTGCCCAACTGCAATGT	0.532												
NOS1	4842	broad.mit.edu	37	12	117723943	117723943	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:117723943C>T	uc001twm.1	-	6	1942	c.1256G>A	c.(1255-1257)CGC>CAC	p.R419H		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	419					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GCCCACACAGCGCGAGGCATT	0.557												
KSR2	283455	broad.mit.edu	37	12	117962945	117962945	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:117962945C>T	uc001two.2	-	14	1899	c.1844G>A	c.(1843-1845)AGC>AAC	p.S615N		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	644					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCGTGGGAAGCTCCGGGCCGA	0.587												
TAOK3	51347	broad.mit.edu	37	12	118590074	118590074	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:118590074T>C	uc001twx.2	-	20	2788	c.2493A>G	c.(2491-2493)CTA>CTG	p.L831L	TAOK3_uc001twv.2_Silent_p.L371L|TAOK3_uc001tww.2_Silent_p.L661L|TAOK3_uc001twy.3_Silent_p.L831L	NM_016281	NP_057365	Q9H2K8	TAOK3_HUMAN	TAO kinase 3	831	Potential.				MAPKKK cascade|negative regulation of JNK cascade|positive regulation of JNK cascade|protein autophosphorylation	mitochondrion|plasma membrane	ATP binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTCTCTGCTCTAGCTTCTGGA	0.562												
CIT	11113	broad.mit.edu	37	12	120142198	120142198	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:120142198G>A	uc001txi.1	-	40	5201	c.5148C>T	c.(5146-5148)AAC>AAT	p.N1716N	CIT_uc001txh.1_Silent_p.N1235N|CIT_uc001txj.1_Silent_p.N1758N	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1716	CNH.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		TGAGGTTTTCGTTGTAGCGGA	0.512												
GCN1L1	10985	broad.mit.edu	37	12	120567101	120567101	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:120567101C>T	uc001txo.2	-	57	7882	c.7869G>A	c.(7867-7869)CGG>CGA	p.R2623R		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2623	HEAT 24.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTTCACCCTGCCGCATCTTGA	0.517												
GCN1L1	10985	broad.mit.edu	37	12	120575062	120575062	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:120575062A>G	uc001txo.2	-	50	6738	c.6725T>C	c.(6724-6726)ATA>ACA	p.I2242T		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2242					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTCGTTCCCTATGAGCCGGAT	0.572												
GCN1L1	10985	broad.mit.edu	37	12	120593173	120593173	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:120593173C>T	uc001txo.2	-	30	3515	c.3502G>A	c.(3502-3504)GTG>ATG	p.V1168M		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1168					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGATAGATCACGTCGTCAATC	0.602												
RNF34	80196	broad.mit.edu	37	12	121858092	121858092	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:121858092C>T	uc001ual.1	+	4	795	c.681C>T	c.(679-681)GAC>GAT	p.D227D	RNF34_uc001uak.1_Silent_p.D228D|RNF34_uc001uam.1_Silent_p.D227D	NM_025126	NP_079402	Q969K3	RNF34_HUMAN	ring finger protein 34 isoform 2	227	Asp-rich.				apoptosis	endomembrane system|membrane|nuclear speck	ligase activity|zinc ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000432)|Epithelial(86;0.00233)		atgatgacgacgatgatgagg	0.338												
ZCCHC8	55596	broad.mit.edu	37	12	122958303	122958303	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:122958303G>A	uc001ucn.2	-	14	1996	c.1865C>T	c.(1864-1866)GCC>GTC	p.A622V	ZCCHC8_uc001ucl.2_Missense_Mutation_p.A233V|ZCCHC8_uc001ucm.2_Missense_Mutation_p.A384V|ZCCHC8_uc009zxp.2_Missense_Mutation_p.A384V|ZCCHC8_uc009zxq.2_Missense_Mutation_p.A384V	NM_017612	NP_060082	Q6NZY4	ZCHC8_HUMAN	zinc finger, CCHC domain containing 8	622						catalytic step 2 spliceosome	nucleic acid binding|protein binding|zinc ion binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.25e-05)|Epithelial(86;0.000113)|BRCA - Breast invasive adenocarcinoma(302;0.202)		ATCAAGAAGGGCACCTTCAGT	0.498												
RSRC2	65117	broad.mit.edu	37	12	123005956	123005956	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:123005956G>A	uc001ucr.2	-	3	329	c.183C>T	c.(181-183)CAC>CAT	p.H61H	RSRC2_uc001uco.2_5'UTR|RSRC2_uc001ucp.2_5'UTR|RSRC2_uc001ucq.2_5'UTR|RSRC2_uc001ucs.2_5'UTR|RSRC2_uc001uct.2_Missense_Mutation_p.T6I|RSRC2_uc001ucu.2_Silent_p.H61H	NM_023012	NP_075388	Q7L4I2	RSRC2_HUMAN	arginine/serine-rich coiled-coil 2 isoform a	61	Ser-rich.									ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.14e-05)|Epithelial(86;0.000183)|BRCA - Breast invasive adenocarcinoma(302;0.201)		TCCGGCTCCTGTGTTTTCTTC	0.308												
KNTC1	9735	broad.mit.edu	37	12	123060422	123060422	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:123060422A>G	uc001ucv.2	+	29	2725	c.2562A>G	c.(2560-2562)GTA>GTG	p.V854V	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	854					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		TAAGAGAGGTAAATCTCTTAA	0.318												
KNTC1	9735	broad.mit.edu	37	12	123099602	123099602	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:123099602G>A	uc001ucv.2	+	56	6105	c.5942G>A	c.(5941-5943)GGA>GAA	p.G1981E	KNTC1_uc010taf.1_Missense_Mutation_p.G906E	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	1981					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		CTTTGGAATGGACTCTTGCAA	0.383												
SBNO1	55206	broad.mit.edu	37	12	123806165	123806165	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:123806165T>C	uc010tap.1	-	16	2240	c.2240A>G	c.(2239-2241)TAT>TGT	p.Y747C	SBNO1_uc010tao.1_Missense_Mutation_p.Y746C|SBNO1_uc010taq.1_Intron|SBNO1_uc001uet.2_Missense_Mutation_p.Y747C|SBNO1_uc001ueu.2_Missense_Mutation_p.Y746C|SBNO1_uc001uev.2_Missense_Mutation_p.Y745C|SBNO1_uc009zxy.1_Missense_Mutation_p.Y712C	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	747							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		AGAGCTCTCATAGTCACTTTC	0.393												
DDX55	57696	broad.mit.edu	37	12	124102328	124102328	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:124102328G>A	uc001ufi.2	+	11	1097	c.1073G>A	c.(1072-1074)CGC>CAC	p.R358H	DDX55_uc001ufh.2_Missense_Mutation_p.R211H|DDX55_uc001ufj.1_Missense_Mutation_p.R211H|DDX55_uc001ufk.2_Missense_Mutation_p.R211H|DDX55_uc001ufl.2_5'Flank	NM_020936	NP_065987	Q8NHQ9	DDX55_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	358	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000142)|Epithelial(86;0.000637)|all cancers(50;0.00772)		CGCTGCGGTCGCACAGCTCGC	0.507												
DNAH10	196385	broad.mit.edu	37	12	124330240	124330240	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:124330240G>A	uc001uft.3	+	30	5125	c.5100G>A	c.(5098-5100)GCG>GCA	p.A1700A		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1700	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TCCACAAAGCGCAAAAAGGGG	0.562												
DNAH10	196385	broad.mit.edu	37	12	124352477	124352477	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:124352477G>A	uc001uft.3	+	42	7001	c.6976G>A	c.(6976-6978)GCG>ACG	p.A2326T		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2326					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GATGTTGGATGCGTTGCTAGA	0.502												
ZNF664	144348	broad.mit.edu	37	12	124496699	124496699	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:124496699A>G	uc001ufz.2	+	6	1838	c.8A>G	c.(7-9)TAC>TGC	p.Y3C	ZNF664_uc001uga.2_Missense_Mutation_p.Y3C|ZNF664_uc001ugb.2_Missense_Mutation_p.Y3C	NM_152437	NP_689650	Q8N3J9	ZN664_HUMAN	zinc finger protein 664	3	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;0.000239)|OV - Ovarian serous cystadenocarcinoma(86;0.000247)|all cancers(50;0.00155)|BRCA - Breast invasive adenocarcinoma(302;0.249)		AAAATGATCTACAAGTGCCCC	0.368												
DHX37	57647	broad.mit.edu	37	12	125432358	125432358	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:125432358G>T	uc001ugy.2	-	27	3563	c.3464C>A	c.(3463-3465)ACT>AAT	p.T1155N	DHX37_uc001ugz.1_3'UTR	NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	1155				YLLAEYCEWLPQAMHPDIEKAWPPTTVH -> CEFDQGQGV GVDRMGSLRQGLCALCTVSPGLAEGSGPTAAGQLFAT (in Ref. 2).			ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		TCAGTGGACAGTGGTGGGGGG	0.637												
SLC15A4	121260	broad.mit.edu	37	12	129278857	129278857	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:129278857C>T	uc001uhu.2	-	8	1671	c.1618G>A	c.(1618-1620)GCT>ACT	p.A540T	SLC15A4_uc001uhv.2_RNA	NM_145648	NP_663623	Q8N697	S15A4_HUMAN	solute carrier family 15, member 4	540	Helical; (Potential).				oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.69e-06)|Epithelial(86;1.17e-05)|all cancers(50;5.07e-05)		TGAATAGCAGCCAGAAGAAAA	0.438												
RIMBP2	23504	broad.mit.edu	37	12	130941158	130941158	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:130941158G>A	uc001uil.2	-	4	354	c.190C>T	c.(190-192)CAC>TAC	p.H64Y	RIMBP2_uc001uim.2_5'UTR	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	64						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TTGCCAGCGTGCTGCCGGAAC	0.607												
GPR133	283383	broad.mit.edu	37	12	131439178	131439178	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:131439178G>A	uc001uit.3	+	2	635	c.76G>A	c.(76-78)GTC>ATC	p.V26I	GPR133_uc010tbm.1_Missense_Mutation_p.V26I	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	26	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		GGTGCGTGGCGTCTACTCCAG	0.572												
EP400	57634	broad.mit.edu	37	12	132512679	132512679	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:132512679A>G	uc001ujn.2	+	26	5262	c.5227A>G	c.(5227-5229)AGC>GGC	p.S1743G	EP400_uc001ujl.2_Missense_Mutation_p.S1742G|EP400_uc001ujm.2_Missense_Mutation_p.S1662G	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	1779					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		TGCCCTGCCTAGCCATGGAAG	0.552												
EP400	57634	broad.mit.edu	37	12	132561083	132561083	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:132561083T>C	uc001ujn.2	+	51	9079	c.9044T>C	c.(9043-9045)GTT>GCT	p.V3015A	EP400_uc001ujl.2_Missense_Mutation_p.V3014A|EP400_uc001ujm.2_Missense_Mutation_p.V2934A|EP400_uc001ujp.2_Missense_Mutation_p.V225A|EP400_uc010tbo.1_Silent_p.C81C	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	3051					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CCTCAAGTTGTTCAACAGCAA	0.443												
POLE	5426	broad.mit.edu	37	12	133241979	133241979	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:133241979G>A	uc001uks.1	-	21	2421	c.2377C>T	c.(2377-2379)CGC>TGC	p.R793C	POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.R766C	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	793					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		TTCTTGCAGCGCTTCACCTCA	0.567								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage				
POLE	5426	broad.mit.edu	37	12	133245254	133245254	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:133245254G>A	uc001uks.1	-	18	2037	c.1993C>T	c.(1993-1995)CGG>TGG	p.R665W	POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.R638W	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	665					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GCCATCTTCCGCTGGCAGTTT	0.632								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage				
POLE	5426	broad.mit.edu	37	12	133256634	133256634	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:133256634T>C	uc001uks.1	-	5	375	c.331_splice	c.e5-1	p.G111_splice	POLE_uc010tbq.1_Splice_Site|POLE_uc009zyu.1_Splice_Site_p.G84_splice	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon						base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		CTCACAACCCTAATCAGGATC	0.443								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage				
ANKLE2	23141	broad.mit.edu	37	12	133310978	133310978	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:133310978G>T	uc001ukx.2	-	10	1951	c.1884C>A	c.(1882-1884)ACC>ACA	p.T628T	ANKLE2_uc009zyw.1_5'UTR|ANKLE2_uc001uky.3_Silent_p.T566T	NM_015114	NP_055929	Q86XL3	ANKL2_HUMAN	ankyrin repeat and LEM domain containing 2	628						cytoplasm|integral to membrane|nuclear envelope					0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.3e-08)|Epithelial(86;1.56e-07)|all cancers(50;4.94e-06)		TACCAGACGTGGTGGCTTTAT	0.562												
ZNF605	100289635	broad.mit.edu	37	12	133502068	133502068	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:133502068C>A	uc001ulh.2	-	5	2142	c.1817G>T	c.(1816-1818)AGG>ATG	p.R606M	ZNF605_uc001uli.2_Missense_Mutation_p.R637M|ZNF605_uc001ulj.2_Missense_Mutation_p.R606M	NM_183238	NP_899061	Q86T29	ZN605_HUMAN	zinc finger protein 605 isoform 1	606	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00227)|all_epithelial(31;0.142)		OV - Ovarian serous cystadenocarcinoma(86;9.24e-09)|Epithelial(86;2.11e-07)|all cancers(50;5.27e-06)		CCTCTGATGCCTCATAAGGTG	0.403												
TPTE2	93492	broad.mit.edu	37	13	20056655	20056655	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:20056655T>C	uc001umd.2	-	5	363	c.152A>G	c.(151-153)GAA>GGA	p.E51G	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Missense_Mutation_p.E51G|TPTE2_uc001ume.2_Intron|TPTE2_uc009zzm.2_Intron|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	51						endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		TTCAGCATCTTCAACTTCAAA	0.348												
MPHOSPH8	54737	broad.mit.edu	37	13	20245347	20245347	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:20245347A>G	uc001umh.2	+	13	2468	c.2459A>G	c.(2458-2460)GAC>GGC	p.D820G		NM_017520	NP_059990	Q99549	MPP8_HUMAN	M-phase phosphoprotein 8	820					cell cycle	cytoplasm|nucleus					0		all_cancers(29;2.83e-16)|all_lung(29;1.16e-17)|all_epithelial(30;8.13e-16)|Lung NSC(5;6.91e-15)|Lung SC(185;0.0367)		all cancers(112;8.43e-05)|Epithelial(112;0.000426)|OV - Ovarian serous cystadenocarcinoma(117;0.00596)|Lung(94;0.015)|LUSC - Lung squamous cell carcinoma(192;0.0795)		CCATTGTAGGACAGTCATTTT	0.368												
PSPC1	55269	broad.mit.edu	37	13	20356666	20356666	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:20356666A>G	uc001uml.2	-	1	418	c.232T>C	c.(232-234)TAC>CAC	p.Y78H	PSPC1_uc001umj.1_RNA|PSPC1_uc001umk.1_RNA	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	78					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		CGCTGCGTGTACGTCTTCTCG	0.637												
LATS2	26524	broad.mit.edu	37	13	21562886	21562886	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:21562886G>A	uc009zzs.2	-	4	1398	c.1033C>T	c.(1033-1035)CAG>TAG	p.Q345*	LATS2_uc001unr.3_Nonsense_Mutation_p.Q345*	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	345					cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		AGCAGGCTCTGCGGGGGGCTG	0.701												
LATS2	26524	broad.mit.edu	37	13	21562970	21562970	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:21562970G>A	uc009zzs.2	-	4	1314	c.949C>T	c.(949-951)CAC>TAC	p.H317Y	LATS2_uc001unr.3_Missense_Mutation_p.H317Y	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	317					cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		TGCTTGTGGTGTGGGTGCGGC	0.741												
SACS	26278	broad.mit.edu	37	13	23932488	23932488	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:23932488A>G	uc001uon.2	-	7	1179	c.590T>C	c.(589-591)GTC>GCC	p.V197A	SACS_uc001uoo.2_Missense_Mutation_p.V50A|SACS_uc001uop.1_5'Flank|SACS_uc001uoq.1_Missense_Mutation_p.V50A	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	197					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TATATGATAGACAGAATTAAA	0.373												
ATP12A	479	broad.mit.edu	37	13	25268672	25268672	+	Missense_Mutation	SNP	C	C	T	rs145531717		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:25268672C>T	uc001upp.2	+	11	1655	c.1468C>T	c.(1468-1470)CGC>TGC	p.R490C	ATP12A_uc010aaa.2_Missense_Mutation_p.R496C	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	490	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	AAAAAGAAACCGCAAAGTAGC	0.393											OREG0022298	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
RNF17	56163	broad.mit.edu	37	13	25338390	25338390	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:25338390C>T	uc001upr.2	+	1	90	c.49C>T	c.(49-51)CGA>TGA	p.R17*	RNF17_uc010tdd.1_5'UTR|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Nonsense_Mutation_p.R17*|RNF17_uc001ups.2_5'UTR|RNF17_uc001upq.1_Nonsense_Mutation_p.R17*	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	17					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TTCCTACCAGCGAATGGGGAG	0.622												
RNF17	56163	broad.mit.edu	37	13	25448299	25448299	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:25448299A>G	uc001upr.2	+	33	4536	c.4495A>G	c.(4495-4497)AAG>GAG	p.K1499E	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.K1495E|RNF17_uc001ups.2_Missense_Mutation_p.K1438E|RNF17_uc010aac.2_Missense_Mutation_p.K691E|RNF17_uc010aad.2_Missense_Mutation_p.K509E	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1499	Tudor 4.				multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		GTATAGAGCGAAGATTGTTGC	0.299												
SHISA2	387914	broad.mit.edu	37	13	26621066	26621066	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:26621066T>C	uc001uqm.1	-	2	558	c.473A>G	c.(472-474)AAC>AGC	p.N158S		NM_001007538	NP_001007539	Q6UWI4	SHSA2_HUMAN	shisa homolog 2 precursor	158	Cytoplasmic (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2						CATCAAGCGGTTACCCCCTGG	0.637												
GPR12	2835	broad.mit.edu	37	13	27332961	27332961	+	Nonstop_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:27332961T>C	uc010aal.2	-	2	1226	c.1004A>G	c.(1003-1005)TAG>TGG	p.*335W	GPR12_uc010tdl.1_Nonstop_Mutation_p.*176W	NM_005288	NP_005279	P47775	GPR12_HUMAN	G protein-coupled receptor 12	335						integral to plasma membrane					0	Colorectal(5;5.77e-05)	Breast(139;0.198)		Epithelial(112;9.37e-07)|OV - Ovarian serous cystadenocarcinoma(117;1.16e-06)|all cancers(112;8.31e-06)|GBM - Glioblastoma multiforme(144;0.00121)|Lung(94;0.111)|LUSC - Lung squamous cell carcinoma(192;0.184)		GCAAGGGTGCTACACATCACT	0.552												
MTIF3	219402	broad.mit.edu	37	13	28014141	28014141	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:28014141C>A	uc001urh.2	-	1	1669	c.445G>T	c.(445-447)GCG>TCG	p.A149S	MTIF3_uc001uri.2_Missense_Mutation_p.A149S|MTIF3_uc001urj.2_Missense_Mutation_p.A149S|MTIF3_uc001urk.2_Missense_Mutation_p.A149S	NM_152912	NP_690876	Q9H2K0	IF3M_HUMAN	mitochondrial translational initiation factor 3	149					regulation of translational initiation|ribosome disassembly	mitochondrion	ribosomal small subunit binding|translation initiation factor activity			ovary(1)|skin(1)	2		Lung SC(185;0.0161)	Colorectal(13;0.00042)|READ - Rectum adenocarcinoma(15;0.105)	all cancers(112;0.108)|OV - Ovarian serous cystadenocarcinoma(117;0.157)		TTGGGGTTCGCCTTCTCCATC	0.488												
FLT3	2322	broad.mit.edu	37	13	28610120	28610120	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:28610120T>C	uc001urw.2	-	11	1452	c.1370A>G	c.(1369-1371)TAC>TGC	p.Y457C	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.Y457C	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	457	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TGGTAATGGGTATCCATCCGA	0.423			Mis|O		AML|ALL							
FLT3	2322	broad.mit.edu	37	13	28611391	28611391	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:28611391C>A	uc001urw.2	-	10	1322	c.1240G>T	c.(1240-1242)GGA>TGA	p.G414*	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Nonsense_Mutation_p.G414*	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	414	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	ATATATTCTCCTGGCTGGTGC	0.343			Mis|O		AML|ALL							
PAN3	255967	broad.mit.edu	37	13	28841299	28841299	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:28841299T>C	uc001urz.2	+	10	1211	c.1203T>C	c.(1201-1203)AAT>AAC	p.N401N	PAN3_uc010tdo.1_Silent_p.N547N|PAN3_uc001ury.2_Silent_p.N235N|PAN3_uc001urx.2_Silent_p.N347N	NM_175854	NP_787050	Q58A45	PAN3_HUMAN	PABP1-dependent poly A-specific ribonuclease	547	Protein kinase.|Interaction with PAN2.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening	centrosome|cytosol	ATP binding|protein kinase activity			ovary(1)	1	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)	Colorectal(13;0.000334)	all cancers(112;0.0102)|Epithelial(112;0.0803)|GBM - Glioblastoma multiforme(144;0.121)|OV - Ovarian serous cystadenocarcinoma(117;0.13)|Lung(94;0.174)		AACACTCAAATATCGTAACTT	0.383												
PAN3	255967	broad.mit.edu	37	13	28862168	28862168	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:28862168T>C	uc001urz.2	+	17	2002	c.1994T>C	c.(1993-1995)TTG>TCG	p.L665S	PAN3_uc001ury.2_Missense_Mutation_p.L499S|PAN3_uc001urx.2_Missense_Mutation_p.L611S	NM_175854	NP_787050	Q58A45	PAN3_HUMAN	PABP1-dependent poly A-specific ribonuclease	811	Interaction with PAN2.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening	centrosome|cytosol	ATP binding|protein kinase activity			ovary(1)	1	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)	Colorectal(13;0.000334)	all cancers(112;0.0102)|Epithelial(112;0.0803)|GBM - Glioblastoma multiforme(144;0.121)|OV - Ovarian serous cystadenocarcinoma(117;0.13)|Lung(94;0.174)		CGTTATCTGTTGAAACTCTTT	0.433												
FLT1	2321	broad.mit.edu	37	13	28896941	28896941	+	Missense_Mutation	SNP	A	A	G	rs116741209	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:28896941A>G	uc001usb.3	-	21	3224	c.2939T>C	c.(2938-2940)GTT>GCT	p.V980A	FLT1_uc010aap.2_5'Flank|FLT1_uc010aaq.2_Missense_Mutation_p.V105A|FLT1_uc001usa.3_Missense_Mutation_p.V198A	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	980	Cytoplasmic (Potential).|Protein kinase.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	CTCTTCCTCAACATCACTCAG	0.433												
SLC46A3	283537	broad.mit.edu	37	13	29287455	29287455	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:29287455C>T	uc001usi.2	-	2	1392	c.422G>A	c.(421-423)TGT>TAT	p.C141Y	SLC46A3_uc001usg.2_Missense_Mutation_p.C66Y|SLC46A3_uc001usj.2_Missense_Mutation_p.C141Y|SLC46A3_uc001ush.2_Missense_Mutation_p.C141Y|SLC46A3_uc001usk.2_Missense_Mutation_p.C66Y	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	141	Helical; (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		ATAATTGCCACAAAATGCACC	0.393												
USPL1	10208	broad.mit.edu	37	13	31232624	31232624	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:31232624A>G	uc001utc.2	+	9	2842	c.2410A>G	c.(2410-2412)ATA>GTA	p.I804V	USPL1_uc001utd.2_Missense_Mutation_p.I475V|USPL1_uc001ute.1_Missense_Mutation_p.I475V	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	804					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		AACTAAAGGTATAAACCAGAA	0.428												
HSPH1	10808	broad.mit.edu	37	13	31725327	31725327	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:31725327A>T	uc001utj.2	-	7	1063	c.665T>A	c.(664-666)GTA>GAA	p.V222E	HSPH1_uc001utk.2_Missense_Mutation_p.V222E|HSPH1_uc010aaw.2_Missense_Mutation_p.V181E|HSPH1_uc001utl.2_Missense_Mutation_p.V224E|HSPH1_uc010tds.1_Missense_Mutation_p.V146E|HSPH1_uc010tdt.1_RNA	NM_006644	NP_006635	Q92598	HS105_HUMAN	heat shock 105kD	222					positive regulation of MHC class I biosynthetic process|positive regulation of NK T cell activation|response to unfolded protein	cytoplasm|extracellular region	ATP binding				0		Lung SC(185;0.0257)		all cancers(112;0.00385)|Epithelial(112;0.0328)|OV - Ovarian serous cystadenocarcinoma(117;0.0375)|GBM - Glioblastoma multiforme(144;0.125)		TGTTCCCAGTACCTAATTTGG	0.308												
RXFP2	122042	broad.mit.edu	37	13	32376343	32376343	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:32376343T>A	uc001utt.2	+	18	2137	c.2066T>A	c.(2065-2067)ATC>AAC	p.I689N	RXFP2_uc010aba.2_Missense_Mutation_p.I648N	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	689	Helical; Name=7; (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TTGAATCCAATCCTCTATACT	0.328												
FRY	10129	broad.mit.edu	37	13	32653054	32653054	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:32653054C>T	uc001utx.2	+	2	650	c.154C>T	c.(154-156)CTA>TTA	p.L52L	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	52					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		GCCAACCATGCTACCCATCAA	0.498												
BRCA2	675	broad.mit.edu	37	13	32913067	32913067	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:32913067T>C	uc001uub.1	+	11	4802	c.4575T>C	c.(4573-4575)CAT>CAC	p.H1525H		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	1525	BRCA2 4.				cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		TGGGTTTTCATACAGCTAGCG	0.388			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)		
BRCA2	675	broad.mit.edu	37	13	32913920	32913920	+	Missense_Mutation	SNP	G	G	A	rs80358766		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:32913920G>A	uc001uub.1	+	11	5655	c.5428G>A	c.(5428-5430)GTT>ATT	p.V1810I		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	1810					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AGATATTTGCGTTGAGGAACT	0.343			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)		
BRCA2	675	broad.mit.edu	37	13	32914557	32914557	+	Missense_Mutation	SNP	C	C	T	rs80358843		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:32914557C>T	uc001uub.1	+	11	6292	c.6065C>T	c.(6064-6066)TCA>TTA	p.S2022L		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	2022					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AACGAACATTCAGACCAGCTC	0.338			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)		
STARD13	90627	broad.mit.edu	37	13	33701537	33701537	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:33701537G>A	uc001uuw.2	-	6	2021	c.1895C>T	c.(1894-1896)TCC>TTC	p.S632F	STARD13_uc001uuu.2_Missense_Mutation_p.S624F|STARD13_uc001uuv.2_Missense_Mutation_p.S514F|STARD13_uc001uux.2_Missense_Mutation_p.S597F|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Missense_Mutation_p.S617F	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	632					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		GTTGGACATGGAGTGCTTCTC	0.592												
RFC3	5983	broad.mit.edu	37	13	34410364	34410364	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:34410364T>C	uc001uuz.2	+	9	1113	c.1003T>C	c.(1003-1005)TTT>CTT	p.F335L	RFC3_uc001uva.2_Intron	NM_002915	NP_002906	P40938	RFC3_HUMAN	replication factor C 3 isoform 1	335					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|response to organophosphorus|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|protein binding				0		Hepatocellular(188;0.0191)|Lung SC(185;0.0548)		all cancers(112;5.09e-06)|Epithelial(112;6.52e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00107)|OV - Ovarian serous cystadenocarcinoma(117;0.0285)|GBM - Glioblastoma multiforme(144;0.123)		CTTGGAAGCGTTTGTGGCCAA	0.428												
NBEA	26960	broad.mit.edu	37	13	35738555	35738555	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:35738555A>G	uc001uvb.2	+	25	4348	c.4142A>G	c.(4141-4143)AAC>AGC	p.N1381S	NBEA_uc010abi.2_Missense_Mutation_p.N72S	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1381						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding	p.N1381fs*28(1)		ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TTTGTACATAACACAATTCAC	0.338												
NBEA	26960	broad.mit.edu	37	13	35782886	35782886	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:35782886A>G	uc001uvb.2	+	32	5622	c.5416A>G	c.(5416-5418)ACC>GCC	p.T1806A	NBEA_uc010abi.2_Missense_Mutation_p.T462A	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1806						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TTTAGCTGTAACCACTGTGGG	0.428												
CCNA1	8900	broad.mit.edu	37	13	37014180	37014180	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:37014180A>G	uc001uvr.3	+	6	1308	c.958A>G	c.(958-960)ACA>GCA	p.T320A	CCNA1_uc010teo.1_Missense_Mutation_p.T276A|CCNA1_uc010abq.2_Missense_Mutation_p.T276A|CCNA1_uc010abp.2_Missense_Mutation_p.T276A|CCNA1_uc001uvs.3_Missense_Mutation_p.T319A|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	320					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		TGATACATACACAAAACGACA	0.378												
FAM48A	55578	broad.mit.edu	37	13	37598550	37598550	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:37598550C>T	uc001uwg.2	-	18	1607	c.1359G>A	c.(1357-1359)TCG>TCA	p.S453S	FAM48A_uc010abt.2_Silent_p.S454S|FAM48A_uc001uwh.2_Silent_p.S454S|FAM48A_uc001uwi.2_Silent_p.S453S|FAM48A_uc001uwj.2_Silent_p.S454S|FAM48A_uc001uwk.2_Silent_p.S453S|FAM48A_uc010tes.1_Silent_p.S417S|FAM48A_uc001uwl.1_Silent_p.S453S|FAM48A_uc001uwd.2_5'Flank|FAM48A_uc001uwe.2_5'UTR|FAM48A_uc001uwf.2_Silent_p.S31S	NM_001014286	NP_001014308	Q8NEM7	FA48A_HUMAN	family with sequence similarity 48, member A	453					autophagy|gastrulation	SAGA-type complex	protein binding				0		Lung NSC(96;2.09e-06)|Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.0959)		all cancers(112;6.06e-07)|Epithelial(112;1.87e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00794)|BRCA - Breast invasive adenocarcinoma(63;0.0128)|GBM - Glioblastoma multiforme(144;0.0477)		TCCCCAATACCGAAGACTGAA	0.368												
POSTN	10631	broad.mit.edu	37	13	38153249	38153249	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:38153249T>C	uc001uwo.3	-	14	1919	c.1801A>G	c.(1801-1803)ACA>GCA	p.T601A	POSTN_uc010tet.1_Missense_Mutation_p.T129A|POSTN_uc001uwp.3_Missense_Mutation_p.T601A|POSTN_uc001uwr.2_Missense_Mutation_p.T601A|POSTN_uc001uwq.2_Missense_Mutation_p.T601A|POSTN_uc010teu.1_Missense_Mutation_p.T601A|POSTN_uc010tev.1_Missense_Mutation_p.T601A|POSTN_uc010tew.1_Missense_Mutation_p.T601A	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	601	FAS1 4.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		ACCAGAAGTGTATCATTTACC	0.308												
FREM2	341640	broad.mit.edu	37	13	39263610	39263610	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:39263610G>A	uc001uwv.2	+	1	2438	c.2129G>A	c.(2128-2130)CGT>CAT	p.R710H		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	710	CSPG 4.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TGTCCCCTTCGTATGGTGGTA	0.557												
STOML3	161003	broad.mit.edu	37	13	39544433	39544433	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:39544433A>G	uc001uwx.2	-	5	543	c.405T>C	c.(403-405)GAT>GAC	p.D135D	STOML3_uc010tez.1_Silent_p.D126D	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	135	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		CTTGATGGACATCGTTGACAT	0.478												
STOML3	161003	broad.mit.edu	37	13	39546706	39546706	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:39546706T>C	uc001uwx.2	-	4	393	c.255A>G	c.(253-255)ATA>ATG	p.I85M	STOML3_uc010tez.1_Missense_Mutation_p.I76M	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	85	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		CAAACACATCTATGCATGGCA	0.378												
KBTBD7	84078	broad.mit.edu	37	13	41766825	41766825	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:41766825A>G	uc001uxw.1	-	1	1878	c.1569T>C	c.(1567-1569)GAT>GAC	p.D523D	uc001uxv.1_Intron	NM_032138	NP_115514	Q8WVZ9	KBTB7_HUMAN	kelch repeat and BTB (POZ) domain containing 7	523	Kelch 3.						protein binding			ovary(1)	1		Lung NSC(96;0.000105)|Breast(139;0.00715)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.21e-09)|Epithelial(112;6.99e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000196)|GBM - Glioblastoma multiforme(144;0.000857)|BRCA - Breast invasive adenocarcinoma(63;0.0669)		AATAGATTTCATCATTGAAGA	0.438												
C13orf31	144811	broad.mit.edu	37	13	44463029	44463029	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:44463029A>G	uc010acg.2	+	5	1529	c.1044A>G	c.(1042-1044)GAA>GAG	p.E348E	C13orf31_uc001uzf.3_Silent_p.E348E	NM_001128303	NP_001121775	Q8IV20	CM031_HUMAN	hypothetical protein LOC144811	348											0		Lung NSC(96;0.000163)|all_hematologic(4;0.0127)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Breast(139;0.0364)|Lung SC(185;0.0367)|Acute lymphoblastic leukemia(4;0.138)		GBM - Glioblastoma multiforme(144;0.000573)|BRCA - Breast invasive adenocarcinoma(63;0.121)		TTCCAAGGGAATCAGCAGAGG	0.418												
KCTD4	386618	broad.mit.edu	37	13	45768415	45768415	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:45768415T>C	uc001uzx.3	-	2	692	c.288A>G	c.(286-288)GGA>GGG	p.G96G	GTF2F2_uc001uzv.2_Intron|GTF2F2_uc001uzw.2_Intron	NM_198404	NP_940686	Q8WVF5	KCTD4_HUMAN	potassium channel tetramerisation domain	96	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Lung NSC(96;6.55e-05)|Breast(139;0.00378)|Prostate(109;0.00438)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000249)|BRCA - Breast invasive adenocarcinoma(63;0.207)		ATAGAAGTTCTCCATTTCGTA	0.438												
ZC3H13	23091	broad.mit.edu	37	13	46541688	46541688	+	Silent	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:46541688C>G	uc010tfw.1	-	14	4278	c.4272G>C	c.(4270-4272)GTG>GTC	p.V1424V	ZC3H13_uc001vaq.2_Silent_p.V8V|ZC3H13_uc001vas.1_Silent_p.V1424V	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	1424							nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		CAAATCCCTGCACAGATCCCA	0.413												
ZC3H13	23091	broad.mit.edu	37	13	46544099	46544099	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:46544099T>C	uc010tfw.1	-	13	2586	c.2580A>G	c.(2578-2580)AAA>AAG	p.K860K	ZC3H13_uc001vaq.2_5'Flank|ZC3H13_uc001vas.1_Silent_p.K860K|ZC3H13_uc001vat.1_Silent_p.K860K	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	860							nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		AGAGTCTGTGTTTTTCATCTA	0.378												
RB1	5925	broad.mit.edu	37	13	48919305	48919305	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:48919305T>C	uc001vcb.2	+	4	636	c.470T>C	c.(469-471)GTA>GCA	p.V157A	RB1_uc010acs.1_Intron	NM_000321	NP_000312	P06400	RB_HUMAN	retinoblastoma 1	157					androgen receptor signaling pathway|cell cycle arrest|chromatin remodeling|G1 phase of mitotic cell cycle|interspecies interaction between organisms|maintenance of mitotic sister chromatid cohesion|mitotic cell cycle G1/S transition checkpoint|myoblast differentiation|negative regulation of cell growth|negative regulation of protein kinase activity|negative regulation of S phase of mitotic cell cycle|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of mitotic metaphase/anaphase transition|protein localization to chromosome, centromeric region|Ras protein signal transduction|regulation of centromere complex assembly|regulation of cohesin localization to chromatin|regulation of lipid kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|sister chromatid biorientation	chromatin|PML body|Rb-E2F complex|SWI/SNF complex	androgen receptor binding|DNA binding|kinase binding|phosphoprotein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding|ubiquitin protein ligase binding	p.?(5)		lung(94)|eye(89)|central_nervous_system(47)|bone(22)|breast(21)|urinary_tract(17)|haematopoietic_and_lymphoid_tissue(14)|ovary(10)|prostate(9)|soft_tissue(8)|skin(7)|endometrium(5)|cervix(3)|liver(3)|salivary_gland(2)|stomach(2)|oesophagus(1)|adrenal_gland(1)|kidney(1)|gastrointestinal_tract_(site_indeterminate)(1)|pituitary(1)	358		all_cancers(8;6.9e-71)|all_epithelial(8;4.61e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;1.51e-09)|Lung NSC(96;7.03e-07)|Breast(56;1.53e-05)|Prostate(109;0.000493)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(2;9.98e-18)|LUSC - Lung squamous cell carcinoma(3;0.013)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AAGTATGATGTATTGTTTGCA	0.303		6	D|Mis|N|F|S		retinoblastoma|sarcoma|breast|small cell lung	retinoblastoma|sarcoma|breast|small cell lung			Hereditary_Retinoblastoma	TCGA GBM(7;6.82e-08)|TSP Lung(12;0.097)|TCGA Ovarian(6;0.080)		
FNDC3A	22862	broad.mit.edu	37	13	49580394	49580394	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:49580394C>T	uc001vcm.2	+	2	373	c.68C>T	c.(67-69)GCC>GTC	p.A23V	FNDC3A_uc001vcl.1_Missense_Mutation_p.A23V|FNDC3A_uc001vcn.2_Missense_Mutation_p.A23V|FNDC3A_uc001vco.2_RNA	NM_001079673	NP_001073141	Q9Y2H6	FND3A_HUMAN	fibronectin type III domain containing 3A	23						Golgi membrane|integral to membrane				lung(2)	2		all_lung(13;7.44e-08)|Lung NSC(96;4.08e-06)|Breast(56;0.000111)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.94e-09)		CTTTTGTCTGCCCCTATTGTA	0.318												
KCNRG	283518	broad.mit.edu	37	13	50594527	50594527	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:50594527C>T	uc001vdu.2	+	2	996	c.756C>T	c.(754-756)ATC>ATT	p.I252I	DLEU2_uc001vdn.1_Intron|DLEU2_uc001vdo.1_Intron|KCNRG_uc001vdt.2_3'UTR	NM_173605	NP_775876	Q8N5I3	KCNRG_HUMAN	potassium channel regulator isoform 1	252						voltage-gated potassium channel complex	identical protein binding|voltage-gated potassium channel activity				0		Acute lymphoblastic leukemia(7;3.41e-06)|Lung NSC(96;3.08e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.48e-10)|COAD - Colon adenocarcinoma(199;0.204)		AAGTGCTCATCACGAATGAAA	0.363												
FAM124A	220108	broad.mit.edu	37	13	51826294	51826294	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:51826294G>A	uc001vfg.1	+	3	922	c.791G>A	c.(790-792)CGC>CAC	p.R264H	FAM124A_uc001vfe.2_Missense_Mutation_p.R264H|FAM124A_uc001vff.1_Missense_Mutation_p.R300H	NM_145019	NP_659456	Q86V42	F124A_HUMAN	hypothetical protein LOC220108	264										central_nervous_system(1)	1		Acute lymphoblastic leukemia(7;0.000334)|Breast(56;0.00156)|Prostate(109;0.00538)|Lung NSC(96;0.0216)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;4.25e-07)		AGCGAGGGGCGCTGGCAGACG	0.617												
ATP7B	540	broad.mit.edu	37	13	52548584	52548584	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:52548584T>C	uc001vfw.2	-	2	929	c.772A>G	c.(772-774)ACC>GCC	p.T258A	ATP7B_uc010adv.2_Missense_Mutation_p.T258A|ATP7B_uc001vfx.2_Missense_Mutation_p.T258A|ATP7B_uc001vfy.2_Missense_Mutation_p.T258A|ATP7B_uc010tgt.1_Missense_Mutation_p.T258A|ATP7B_uc010tgu.1_Missense_Mutation_p.T258A|ATP7B_uc010tgv.1_Missense_Mutation_p.T258A|ATP7B_uc010tgw.1_Missense_Mutation_p.T226A	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	258	HMA 3.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		AGTTGGAGGGTGACCACATGG	0.423									Wilson_disease			
THSD1	55901	broad.mit.edu	37	13	52971767	52971767	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:52971767T>C	uc001vgo.2	-	3	1166	c.621A>G	c.(619-621)GCA>GCG	p.A207A	THSD1_uc001vgp.2_Silent_p.A207A|THSD1_uc010tgz.1_Intron|THSD1_uc010aea.2_Intron	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	207	Extracellular (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		GCCCCAAGGGTGCACAGCCAA	0.522												
CKAP2	26586	broad.mit.edu	37	13	53035683	53035683	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:53035683T>C	uc001vgv.2	+	4	922	c.725T>C	c.(724-726)TTT>TCT	p.F242S	CKAP2_uc001vgt.2_Missense_Mutation_p.F241S|CKAP2_uc001vgu.2_Missense_Mutation_p.F241S|CKAP2_uc010tha.1_Missense_Mutation_p.F193S	NM_001098525	NP_001091995	Q8WWK9	CKAP2_HUMAN	cytoskeleton associated protein 2 isoform 2	242					apoptosis|cell cycle	centrosome|microtubule|spindle pole				ovary(1)|skin(1)	2		Breast(56;0.000207)|Lung NSC(96;0.00212)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.6e-08)		ACTACTAAATTTGTGAGCACT	0.428												
PCDH17	27253	broad.mit.edu	37	13	58299162	58299162	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:58299162T>C	uc001vhq.1	+	4	4106	c.3214T>C	c.(3214-3216)TTG>CTG	p.L1072L	PCDH17_uc010aec.1_Silent_p.L1071L|PCDH17_uc001vhr.1_Silent_p.L161L	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	1072	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CAGTCAGTACTTGCCCACTGA	0.532												
PCDH20	64881	broad.mit.edu	37	13	61987120	61987120	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:61987120A>G	uc001vid.3	-	2	1476	c.1112T>C	c.(1111-1113)TTT>TCT	p.F371S	PCDH20_uc010thj.1_Missense_Mutation_p.F371S	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	344	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		ATCCAGGTGAAATAAATCCTT	0.433												
DACH1	1602	broad.mit.edu	37	13	72053400	72053400	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:72053400C>T	uc010thn.1	-	9	2194	c.1771G>A	c.(1771-1773)GTC>ATC	p.V591I	DACH1_uc010tho.1_Missense_Mutation_p.V443I|DACH1_uc010thp.1_Missense_Mutation_p.V389I	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	643	DACHbox-C.|Potential.|Interaction with SIN3A (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		TCCAGTTGGACCTGTTTCTCT	0.378												
DIS3	22894	broad.mit.edu	37	13	73349347	73349347	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:73349347A>G	uc001vix.3	-	6	1361	c.987_splice	c.e6+1	p.M329_splice	DIS3_uc001viy.3_Splice_Site_p.M299_splice|DIS3_uc001viz.2_Splice_Site	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a						CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		TTAGATTCATACCATTCGTTC	0.358										Multiple Myeloma(4;0.011)		
PIBF1	10464	broad.mit.edu	37	13	73357645	73357645	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:73357645A>G	uc001vjc.2	+	2	343	c.38A>G	c.(37-39)AAC>AGC	p.N13S	PIBF1_uc001vja.1_Missense_Mutation_p.N13S|PIBF1_uc010aeo.1_RNA|PIBF1_uc001vjb.2_Missense_Mutation_p.N13S|PIBF1_uc010aep.2_Intron|DIS3_uc001viy.3_5'Flank|DIS3_uc001vix.3_5'Flank|DIS3_uc001viz.2_5'Flank	NM_006346	NP_006337	Q8WXW3	PIBF1_HUMAN	progesterone-induced blocking factor 1	13						centrosome				ovary(1)|breast(1)	2		Prostate(6;0.00191)|Breast(118;0.0736)|Acute lymphoblastic leukemia(28;0.0865)		GBM - Glioblastoma multiforme(99;0.000664)		AAAAAAGTGAACATCTCTAGT	0.318												
COMMD6	170622	broad.mit.edu	37	13	76100731	76100731	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:76100731C>T	uc001vjo.1	-	4	302	c.252G>A	c.(250-252)ACG>ACA	p.T84T	COMMD6_uc001vjn.1_Silent_p.T97T|COMMD6_uc010aet.1_RNA|COMMD6_uc001vjp.1_RNA	NM_203495	NP_987091	Q7Z4G1	COMD6_HUMAN	COMM domain containing 6 isoform b	84	COMM.					cytoplasm|nucleus	protein binding				0		Breast(118;0.0979)|Prostate(6;0.122)		GBM - Glioblastoma multiforme(99;0.0104)		GTCTTCACACCGTTTCAATAA	0.328												
LMO7	4008	broad.mit.edu	37	13	76407252	76407252	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:76407252T>C	uc001vjv.2	+	13	3076	c.2316T>C	c.(2314-2316)TTT>TTC	p.F772F	LMO7_uc010thv.1_Silent_p.F723F|LMO7_uc001vjt.1_Silent_p.F671F|LMO7_uc010thw.1_Silent_p.F622F|LMO7_uc001vjw.1_Silent_p.F678F	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1057	PDZ.					cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		ACTTTGGGTTTACAATAAAAT	0.398												
FBXL3	26224	broad.mit.edu	37	13	77581883	77581883	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:77581883T>C	uc001vkd.2	-	5	1055	c.684A>G	c.(682-684)GAA>GAG	p.E228E		NM_012158	NP_036290	Q9UKT7	FBXL3_HUMAN	F-box and leucine-rich repeat protein 3	228	LRR 3.				regulation of circadian rhythm|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity				0		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.218)		GBM - Glioblastoma multiforme(99;0.0521)		TCAGGGCTAGTTCTCTTAAGC	0.348												
FBXL3	26224	broad.mit.edu	37	13	77592813	77592813	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:77592813T>C	uc001vkd.2	-	3	764	c.393A>G	c.(391-393)CTA>CTG	p.L131L		NM_012158	NP_036290	Q9UKT7	FBXL3_HUMAN	F-box and leucine-rich repeat protein 3	131	LRR 1.				regulation of circadian rhythm|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity				0		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.218)		GBM - Glioblastoma multiforme(99;0.0521)		CAAGTTGCGATAGTATATCAC	0.338												
EDNRB	1910	broad.mit.edu	37	13	78475265	78475265	+	Nonsense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:78475265A>C	uc001vko.2	-	4	1137	c.879T>G	c.(877-879)TAT>TAG	p.Y293*	EDNRB_uc001vkq.1_Nonsense_Mutation_p.Y293*|uc001vkn.1_Intron|EDNRB_uc010aez.1_Nonsense_Mutation_p.Y293*|EDNRB_uc001vkp.1_Nonsense_Mutation_p.Y376*	NM_001122659	NP_001116131	P24530	EDNRB_HUMAN	endothelin receptor type B isoform 1 precursor	293	Helical; Name=5; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|enteric nervous system development|enteric smooth muscle cell differentiation|macrophage chemotaxis|negative regulation of adenylate cyclase activity|negative regulation of cellular protein metabolic process|negative regulation of neuron maturation|negative regulation of transcription from RNA polymerase II promoter|vein smooth muscle contraction	integral to plasma membrane	endothelin-B receptor activity|peptide hormone binding				0		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0933)	Bosentan(DB00559)	TCATTAGTGTATAAAAAAATG	0.338												
POU4F1	5457	broad.mit.edu	37	13	79175650	79175650	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:79175650G>A	uc001vkv.2	-	2	1394	c.1160C>T	c.(1159-1161)GCC>GTC	p.A387V	uc001vku.1_Intron	NM_006237	NP_006228	Q01851	PO4F1_HUMAN	POU domain, class 4, transcription factor 1	387	Homeobox.				axonogenesis|regulation of transcription from RNA polymerase II promoter|synapse assembly	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.129)		CTCGGCGATGGCGGCGATCTT	0.597												
SLITRK6	84189	broad.mit.edu	37	13	86368224	86368224	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:86368224C>T	uc001vll.1	-	2	2879	c.2420G>A	c.(2419-2421)CGT>CAT	p.R807H	SLITRK6_uc010afe.1_Missense_Mutation_p.R260H	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	807	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		CTTCCTTGGACGTGAGTACAT	0.403												
SLITRK5	26050	broad.mit.edu	37	13	88329969	88329969	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:88329969T>C	uc001vln.2	+	2	2545	c.2326T>C	c.(2326-2328)TAC>CAC	p.Y776H	SLITRK5_uc010tic.1_Missense_Mutation_p.Y535H	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	776	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CGTAGAGGATTACAAAGACCT	0.438												
SLITRK5	26050	broad.mit.edu	37	13	88330275	88330275	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:88330275C>T	uc001vln.2	+	2	2851	c.2632C>T	c.(2632-2634)CCC>TCC	p.P878S	SLITRK5_uc010tic.1_Missense_Mutation_p.P637S	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	878	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CCCGGAATATCCCAAATTCCC	0.607												
GPC5	2262	broad.mit.edu	37	13	92051382	92051382	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:92051382C>T	uc010tif.1	+	1	448	c.82C>T	c.(82-84)CAG>TAG	p.Q28*		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	28						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				CGAGGGCGTGCAGACCTGCGA	0.682												
DCT	1638	broad.mit.edu	37	13	95131364	95131364	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:95131364G>A	uc001vlv.3	-	1	573	c.146C>T	c.(145-147)GCC>GTC	p.A49V	DCT_uc010afh.2_Missense_Mutation_p.A49V	NM_001922	NP_001913	P40126	TYRP2_HUMAN	dopachrome tautomerase isoform 1	49	Lumenal, melanosome (Potential).				epidermis development|melanin biosynthetic process from tyrosine	cytosol|integral to membrane|melanosome membrane|microsome	copper ion binding|dopachrome isomerase activity|oxidoreductase activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;3.71e-42)|all_epithelial(2;3.76e-31)|all_lung(2;5.16e-14)|Lung NSC(4;1.33e-13)|Breast(118;0.0013)|Hepatocellular(115;0.00886)|Renal(2;0.00988)		COAD - Colon adenocarcinoma(199;7.07e-05)|GBM - Glioblastoma multiforme(99;0.000472)		ACAGACATTGGCCGACTCTGC	0.617												
TGDS	23483	broad.mit.edu	37	13	95230367	95230367	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:95230367T>C	uc001vlw.2	-	9	838	c.717A>G	c.(715-717)GTA>GTG	p.V239V	TGDS_uc001vlx.2_RNA	NM_014305	NP_055120	O95455	TGDS_HUMAN	TDP-glucose 4,6-dehydratase	239					cellular metabolic process		coenzyme binding|dTDP-glucose 4,6-dehydratase activity|protein binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)					GAAATGCTTCTACAACATCAG	0.363												
TGDS	23483	broad.mit.edu	37	13	95243105	95243105	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:95243105A>G	uc001vlw.2	-	4	434	c.313_splice	c.e4+1	p.D105_splice	TGDS_uc001vlx.2_Intron	NM_014305	NP_055120	O95455	TGDS_HUMAN	TDP-glucose 4,6-dehydratase						cellular metabolic process		coenzyme binding|dTDP-glucose 4,6-dehydratase activity|protein binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)					AACAATGCTTACCTACATGTG	0.368												
GPR180	160897	broad.mit.edu	37	13	95275518	95275518	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:95275518T>C	uc001vly.2	+	7	1128	c.1050T>C	c.(1048-1050)AGT>AGC	p.S350S	GPR180_uc001vlz.2_Silent_p.S249S|GPR180_uc010afi.2_Silent_p.S111S	NM_180989	NP_851320	Q86V85	GP180_HUMAN	G protein-coupled receptor 180 precursor	350						integral to membrane				breast(1)	1	all_neural(89;0.0684)|Medulloblastoma(90;0.163)					TGGAGAGAAGTACACTCAAAA	0.408												
ABCC4	10257	broad.mit.edu	37	13	95695936	95695936	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:95695936C>T	uc001vmd.3	-	29	3854	c.3735G>A	c.(3733-3735)ATG>ATA	p.M1245I	ABCC4_uc010afj.2_Intron|ABCC4_uc010afk.2_Missense_Mutation_p.M1198I	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	1245	ABC transporter 2.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	AAGGACTCACCATTATCTTGT	0.393												
DNAJC3	5611	broad.mit.edu	37	13	96361576	96361576	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:96361576T>C	uc001vmq.2	+	2	286	c.178T>C	c.(178-180)TTT>CTT	p.F60L	DNAJC3_uc001vmp.2_Missense_Mutation_p.F60L|DNAJC3_uc001vmr.2_Missense_Mutation_p.F60L	NM_006260	NP_006251	Q13217	DNJC3_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 3	60	TPR 1.				protein folding|response to unfolded protein|response to virus		heat shock protein binding|protein kinase inhibitor activity|unfolded protein binding				0	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.126)			TTTATCTCAGTTTCATGCTGC	0.353												
FARP1	10160	broad.mit.edu	37	13	99020379	99020379	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:99020379C>T	uc001vnj.2	+	5	664	c.328C>T	c.(328-330)CAC>TAC	p.H110Y	FARP1_uc001vnh.2_Missense_Mutation_p.H110Y	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	110	FERM.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			AGGGCCAAAGCACGTTGTTGT	0.343												
FARP1	10160	broad.mit.edu	37	13	99092982	99092982	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:99092982G>A	uc001vnj.2	+	24	3024	c.2688G>A	c.(2686-2688)TCG>TCA	p.S896S	FARP1_uc001vnh.2_Silent_p.S927S	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	896					regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			TGAGCGCCTCGCGCACATCGC	0.627												
SLC15A1	6564	broad.mit.edu	37	13	99337071	99337071	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:99337071G>A	uc001vno.2	-	23	2111	c.2034C>T	c.(2032-2034)ATC>ATT	p.I678I		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	678	Cytoplasmic (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	ATTGAGCTTCGATCTCCGCTG	0.443												
PCCA	5095	broad.mit.edu	37	13	101077939	101077939	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:101077939C>T	uc001voo.2	+	20	1837	c.1799C>T	c.(1798-1800)TCG>TTG	p.S600L	PCCA_uc010aga.2_Missense_Mutation_p.S574L|PCCA_uc010tiz.1_Missense_Mutation_p.S600L|PCCA_uc001vop.2_RNA	NM_000282	NP_000273	P05165	PCCA_HUMAN	propionyl-Coenzyme A carboxylase, alpha	600					fatty acid beta-oxidation	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|enzyme binding|metal ion binding|propionyl-CoA carboxylase activity			skin(2)	2	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Biotin(DB00121)	AACCTGGCTTCGCCCTTATTG	0.478												
NALCN	259232	broad.mit.edu	37	13	101755586	101755586	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:101755586T>C	uc001vox.1	-	26	3183	c.2994A>G	c.(2992-2994)AAA>AAG	p.K998K		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	998	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GGGGCACCAGTTTGAATATGC	0.438												
TPP2	7174	broad.mit.edu	37	13	103286306	103286306	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:103286306C>T	uc001vpi.3	+	11	1354	c.1251C>T	c.(1249-1251)GAC>GAT	p.D417D		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	417					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TTAGTGCTGACGGGGCCCTTG	0.458												
C13orf27	93081	broad.mit.edu	37	13	103421785	103421785	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:103421785T>A	uc001vpo.2	-	3	300	c.122A>T	c.(121-123)GAT>GTT	p.D41V	C13orf27_uc001vpn.2_5'UTR|C13orf27_uc001vpp.2_5'UTR	NM_138779	NP_620134	Q5JUR7	CM027_HUMAN	hypothetical protein LOC93081	41											0	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					AAGATTCATATCTCCTGATGC	0.353												
ERCC5	2073	broad.mit.edu	37	13	103514541	103514541	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:103514541A>G	uc001vpw.2	+	8	1485	c.1042A>G	c.(1042-1044)ATG>GTG	p.M348V	ERCC5_uc001vpu.1_Missense_Mutation_p.M802V|ERCC5_uc010tjb.1_Missense_Mutation_p.M348V|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Missense_Mutation_p.M180V	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	348					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					TTTACTAGCTATGCAAGCTGC	0.522			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum			
TUBGCP3	10426	broad.mit.edu	37	13	113159011	113159011	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:113159011G>A	uc001vse.1	-	18	2291	c.2104C>T	c.(2104-2106)CAC>TAC	p.H702Y	TUBGCP3_uc010tjq.1_Missense_Mutation_p.H692Y|TUBGCP3_uc001vsf.2_Missense_Mutation_p.H702Y	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	702					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					TGACACTGGTGCAGCACCCCG	0.478												
ATP11A	23250	broad.mit.edu	37	13	113470490	113470490	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:113470490A>G	uc001vsi.3	+	6	623	c.535A>G	c.(535-537)ACC>GCC	p.T179A	ATP11A_uc001vsj.3_Missense_Mutation_p.T179A|ATP11A_uc001vsm.1_Missense_Mutation_p.T55A	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	179	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				GTGCCACGTCACCACCGCCAG	0.552												
MCF2L	23263	broad.mit.edu	37	13	113718664	113718664	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:113718664A>G	uc001vsu.2	+	6	729	c.707A>G	c.(706-708)AAG>AGG	p.K236R	MCF2L_uc001vsq.2_Missense_Mutation_p.K236R|MCF2L_uc010tjr.1_Missense_Mutation_p.K179R|MCF2L_uc001vsr.2_Missense_Mutation_p.K183R|MCF2L_uc001vss.3_Missense_Mutation_p.K177R|MCF2L_uc010tjs.1_Missense_Mutation_p.K177R|MCF2L_uc001vst.1_Missense_Mutation_p.K141R	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	209	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				TACATCGATAAGTCGCAGCTG	0.602												
MCF2L	23263	broad.mit.edu	37	13	113739245	113739245	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:113739245A>C	uc001vsu.2	+	19	2294	c.2272A>C	c.(2272-2274)AAG>CAG	p.K758Q	MCF2L_uc001vsq.2_Missense_Mutation_p.K758Q|MCF2L_uc010tjr.1_Missense_Mutation_p.K701Q|MCF2L_uc001vsr.2_Missense_Mutation_p.K705Q|MCF2L_uc001vss.3_Missense_Mutation_p.K699Q|MCF2L_uc010tjs.1_Missense_Mutation_p.K699Q|MCF2L_uc001vst.1_Missense_Mutation_p.K663Q	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	731	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				CTGTCAGAACAAGCCCCGCTC	0.567												
ADPRHL1	113622	broad.mit.edu	37	13	114083383	114083383	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:114083383G>C	uc001vtq.1	-	4	617	c.530C>G	c.(529-531)GCC>GGC	p.A177G	ADPRHL1_uc001vtp.1_Missense_Mutation_p.A95G	NM_138430	NP_612439	Q8NDY3	ARHL1_HUMAN	ADP-ribosylhydrolase like 1 isoform 1	177					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0395)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.0195)|GBM - Glioblastoma multiforme(44;0.116)			CACAAACAGGGCCGTGCACAG	0.682												
TFDP1	7027	broad.mit.edu	37	13	114287550	114287550	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:114287550C>T	uc001vtw.2	+	6	636	c.424C>T	c.(424-426)CTG>TTG	p.L142L	TFDP1_uc010tkd.1_Silent_p.L47L|TFDP1_uc010tke.1_Silent_p.L47L|TFDP1_uc001vty.3_Silent_p.L142L|TFDP1_uc001vtx.2_Silent_p.L22L|TFDP1_uc010agx.2_Silent_p.L142L	NM_007111	NP_009042	Q14186	TFDP1_HUMAN	transcription factor Dp-1	142	Potential.				cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|regulation of transcription from RNA polymerase II promoter	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			lung(4)|ovary(2)|skin(1)	7	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.132)|all_epithelial(44;0.0731)|all_lung(25;0.149)|Breast(118;0.153)	all cancers(43;0.0576)			GGCAGACGAGCTGGTTGCGGA	0.587										TSP Lung(29;0.18)		
FAM70B	348013	broad.mit.edu	37	13	114469097	114469097	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:114469097C>T	uc001vuh.2	+	2	83	c.56C>T	c.(55-57)TCG>TTG	p.S19L	FAM70B_uc010tkh.1_Missense_Mutation_p.S19L	NM_182614	NP_872420	Q8WV15	FA70B_HUMAN	family with sequence similarity 70, member B	19						integral to membrane					0	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.123)|all_epithelial(44;0.133)	all cancers(43;0.181)			GAAGGGCTTTCGAGGAGGAAG	0.637												
GAS6	2621	broad.mit.edu	37	13	114523949	114523949	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:114523949C>T	uc001vud.2	-	15	2078	c.1925G>A	c.(1924-1926)GGC>GAC	p.G642D	GAS6_uc001vug.2_Missense_Mutation_p.G343D|GAS6_uc001vuf.2_Missense_Mutation_p.G369D	NM_000820	NP_000811	Q14393	GAS6_HUMAN	growth arrest-specific 6 isoform 1 precursor	685	Laminin G-like 2.				cell proliferation|leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|post-translational protein modification|proteolysis|regulation of growth	endoplasmic reticulum lumen|extracellular space|Golgi lumen|platelet alpha granule lumen	calcium ion binding|receptor agonist activity			central_nervous_system(4)	4	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0176)|all_epithelial(44;0.0104)|all_lung(25;0.0249)|Lung NSC(25;0.0908)|Breast(118;0.188)				TGTCATGCAGCCGCGGTAGAA	0.667												
CDC16	8881	broad.mit.edu	37	13	115022679	115022679	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:115022679C>T	uc001vuk.1	+	13	1422	c.1224C>T	c.(1222-1224)GTC>GTT	p.V408V	CDC16_uc001vul.1_Silent_p.V408V|CDC16_uc001vum.1_Silent_p.V314V|CDC16_uc001vun.1_Silent_p.V407V|CDC16_uc001vuo.1_Intron	NM_003903	NP_003894	Q13042	CDC16_HUMAN	anaphase-promoting complex, subunit 6	408	TPR 5.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cell proliferation|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	binding				0	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)			TGCATGAGGTCGGCGTGGTTG	0.423												
UPF3A	65110	broad.mit.edu	37	13	115051798	115051798	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:115051798T>C	uc001vup.2	+	4	480	c.443T>C	c.(442-444)GTA>GCA	p.V148A	UPF3A_uc001vuq.2_Intron|UPF3A_uc001vus.2_Intron|UPF3A_uc001vur.2_RNA|UPF3A_uc001vut.2_5'UTR|UPF3A_uc001vuu.2_5'UTR	NM_023011	NP_075387	Q9H1J1	REN3A_HUMAN	UPF3 regulator of nonsense transcripts homolog A	148					mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|nucleus|plasma membrane	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			skin(1)	1	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)	OV - Ovarian serous cystadenocarcinoma(48;0.195)|Epithelial(10;0.2)		CCTGCAGTGGTAGAGTTTGCT	0.408												
OR4K2	390431	broad.mit.edu	37	14	20344705	20344705	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:20344705T>A	uc001vwh.1	+	1	279	c.279T>A	c.(277-279)TCT>TCA	p.S93S		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AAACCATCTCTTTTGATGGCT	0.393												
OR4K17	390436	broad.mit.edu	37	14	20586234	20586234	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:20586234A>G	uc001vwo.1	+	1	669	c.669A>G	c.(667-669)ATA>ATG	p.I223M		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		GTATAGACATATATTTTGTAC	0.403												
CCNB1IP1	57820	broad.mit.edu	37	14	20781885	20781885	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:20781885A>G	uc001vwv.2	-	6	1022	c.373T>C	c.(373-375)TAT>CAT	p.Y125H	CCNB1IP1_uc001vww.2_Missense_Mutation_p.Y125H|CCNB1IP1_uc001vwx.2_Missense_Mutation_p.Y125H|CCNB1IP1_uc001vwy.2_Missense_Mutation_p.Y125H|CCNB1IP1_uc001vwz.2_Missense_Mutation_p.Y125H	NM_182851	NP_878271	Q9NPC3	CIP1_HUMAN	cyclin B1 interacting protein 1 isoform 3	125						chromosome|nucleus	ligase activity|metal ion binding|protein binding		HMGA2/CCNB1IP1(2)	soft_tissue(2)|ovary(1)	3	all_cancers(95;0.00092)	all_lung(585;0.235)	Epithelial(56;8.86e-07)|all cancers(55;4.98e-06)	GBM - Glioblastoma multiforme(265;0.0164)		TGCTGAGTATATATCTTCTCC	0.378			T	HMGA2	leiomyoma							
APEX1	328	broad.mit.edu	37	14	20923812	20923812	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:20923812A>G	uc001vxg.2	+	2	340	c.8A>G	c.(7-9)AAG>AGG	p.K3R	OSGEP_uc001vxf.2_5'Flank|APEX1_uc001vxh.2_Missense_Mutation_p.K3R|APEX1_uc001vxi.2_Missense_Mutation_p.K3R|APEX1_uc001vxj.2_Missense_Mutation_p.K3R	NM_001641	NP_001632	P27695	APEX1_HUMAN	APEX nuclease 1	3	Necessary for interaction with YBX1, binding to RNA, NPM1-dependent association with rRNA, endoribonuclease activity on abasic RNA and localization in the nucleoli.				base-excision repair|DNA demethylation|DNA recombination|positive regulation of anti-apoptosis|positive regulation of DNA repair|regulation of mRNA stability|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|endoplasmic reticulum|mitochondrion|nuclear speck|nucleolus|perinuclear region of cytoplasm|ribosome	3'-5' exonuclease activity|chromatin DNA binding|damaged DNA binding|DNA-(apurinic or apyrimidinic site) lyase activity|metal ion binding|oxidoreductase activity|phosphodiesterase I activity|protein binding|ribonuclease H activity|RNA binding|site-specific endodeoxyribonuclease activity, specific for altered base|transcription coactivator activity|transcription corepressor activity|uracil DNA N-glycosylase activity			ovary(2)|breast(2)	4	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;1.09e-07)|all cancers(55;1.19e-06)	GBM - Glioblastoma multiforme(265;0.0224)|READ - Rectum adenocarcinoma(17;0.193)	Lucanthone(DB04967)	GGAATGCCGAAGCGTGGGAAA	0.552								Direct_reversal_of_damage|Other_BER_factors				
RNASE9	390443	broad.mit.edu	37	14	21025069	21025069	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:21025069T>C	uc010aho.2	-	4	319	c.160A>G	c.(160-162)ACA>GCA	p.T54A	RNASE9_uc001vxq.3_Missense_Mutation_p.T59A|RNASE9_uc010ahp.2_Missense_Mutation_p.T59A|RNASE9_uc010ahq.2_Missense_Mutation_p.T59A|RNASE9_uc010ahr.2_Missense_Mutation_p.T59A|RNASE9_uc010ahs.2_Missense_Mutation_p.T54A|RNASE9_uc010aht.2_Missense_Mutation_p.T54A|RNASE9_uc010ahu.2_Missense_Mutation_p.T54A	NM_001110357	NP_001103827	P60153	RNAS9_HUMAN	ribonuclease, RNase A family, 9 (non-active)	54						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(2)	2	all_cancers(95;0.00238)		Epithelial(56;3.32e-06)|all cancers(55;2.46e-05)	GBM - Glioblastoma multiforme(265;0.0141)		GCGGGCCCTGTACTAAAAAAT	0.388												
METT11D1	64745	broad.mit.edu	37	14	21460342	21460342	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:21460342A>G	uc001vyn.2	+	4	621	c.424A>G	c.(424-426)ACC>GCC	p.T142A	METT11D1_uc010tlk.1_Silent_p.L152L|METT11D1_uc001vym.2_Missense_Mutation_p.T142A|METT11D1_uc001vyo.2_Missense_Mutation_p.T142A|METT11D1_uc001vyp.2_5'UTR|METT11D1_uc001vyq.2_5'UTR	NM_022734	NP_073571	Q9H7H0	MET17_HUMAN	methyltransferase 11 domain containing 1 isoform	142					translation	mitochondrion|ribosome	copper ion binding|methyltransferase activity				0	all_cancers(95;0.00267)		OV - Ovarian serous cystadenocarcinoma(11;1.34e-10)|Epithelial(56;1.57e-08)|all cancers(55;7.45e-08)	GBM - Glioblastoma multiforme(265;0.0191)		ACGTAAAACTACCTACCATTG	0.478												
NDRG2	57447	broad.mit.edu	37	14	21486152	21486152	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:21486152C>T	uc001vyy.2	-	16	1093	c.943G>A	c.(943-945)GGC>AGC	p.G315S	NDRG2_uc010tll.1_Missense_Mutation_p.G311S|NDRG2_uc001vyt.2_Missense_Mutation_p.G228S|NDRG2_uc001vyu.2_Missense_Mutation_p.G272S|NDRG2_uc001vyv.2_Missense_Mutation_p.G301S|NDRG2_uc001vyw.2_Missense_Mutation_p.G301S|NDRG2_uc001vzb.2_Missense_Mutation_p.G255S|NDRG2_uc001vyx.2_Missense_Mutation_p.G315S|NDRG2_uc001vza.2_Missense_Mutation_p.G301S|NDRG2_uc001vyz.2_Missense_Mutation_p.G301S|NDRG2_uc001vzc.2_Missense_Mutation_p.G285S|NDRG2_uc001vze.2_Missense_Mutation_p.G315S|NDRG2_uc001vzd.2_Missense_Mutation_p.G315S|NDRG2_uc001vzg.2_Missense_Mutation_p.G301S|NDRG2_uc001vzf.2_Missense_Mutation_p.G301S|NDRG2_uc010aig.2_Missense_Mutation_p.G304S	NM_201540	NP_963834	Q9UN36	NDRG2_HUMAN	N-myc downstream-regulated gene 2 isoform a	315					cell differentiation|nervous system development	centrosome|cytosol|Golgi apparatus|nucleus|perinuclear region of cytoplasm				ovary(1)|breast(1)	2	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		TCACTGTAGCCCATGCCTTGC	0.552												
RNASE13	440163	broad.mit.edu	37	14	21502245	21502245	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:21502245C>T	uc001vzj.2	-	2	341	c.203G>A	c.(202-204)TGC>TAC	p.C68Y	NDRG2_uc010tll.1_Intron	NM_001012264	NP_001012264	Q5GAN3	RNS13_HUMAN	ribonuclease, RNase A family, 13 precursor	68						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			upper_aerodigestive_tract(1)	1	all_cancers(95;0.000759)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.019)		GATCTTTGGGCAATCTGAATT	0.433												
RPGRIP1	57096	broad.mit.edu	37	14	21771652	21771652	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:21771652T>C	uc001wag.2	+	5	750	c.750T>C	c.(748-750)AAT>AAC	p.N250N		NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	250					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		AAGATGAAAATTTTGAACAGA	0.473												
SUPT16H	11198	broad.mit.edu	37	14	21831045	21831045	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:21831045G>A	uc001wao.2	-	14	1912	c.1573C>T	c.(1573-1575)CGG>TGG	p.R525W		NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation	525					DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		TTCATTTCCCGAATATGTGGT	0.408												
SUPT16H	11198	broad.mit.edu	37	14	21852192	21852192	+	Translation_Start_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:21852192T>C	uc001wao.2	-	1	234	c.-105A>G	c.(-107--103)ATACT>ATGCT		SUPT16H_uc001wap.2_Translation_Start_Site|SUPT16H_uc001waq.1_Translation_Start_Site	NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation						DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		GACCCGGAAGTATCGACCTCA	0.507												
RAB2B	84932	broad.mit.edu	37	14	21931909	21931909	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:21931909C>A	uc010tlt.1	-	6	481	c.380G>T	c.(379-381)AGG>ATG	p.R127M	RAB2B_uc010tls.1_Missense_Mutation_p.R81M|RAB2B_uc001wax.2_Missense_Mutation_p.R62M|RAB2B_uc010ain.2_Missense_Mutation_p.R18M	NM_032846	NP_116235	Q8WUD1	RAB2B_HUMAN	RAB2B protein isoform 1	127					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane|plasma membrane	GTP binding			ovary(1)	1	all_cancers(95;0.000858)		Epithelial(56;1.53e-06)|all cancers(55;1.44e-05)	GBM - Glioblastoma multiforme(265;0.00391)		CTTCACATCCCTGCGGGACTC	0.403												
ABHD4	63874	broad.mit.edu	37	14	23072501	23072501	+	Nonsense_Mutation	SNP	C	C	T	rs148116289		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:23072501C>T	uc001wgm.2	+	3	388	c.319C>T	c.(319-321)CGA>TGA	p.R107*	ABHD4_uc010tmz.1_Nonsense_Mutation_p.R107*|ABHD4_uc010tna.1_Nonsense_Mutation_p.R107*|ABHD4_uc010tnb.1_RNA	NM_022060	NP_071343	Q8TB40	ABHD4_HUMAN	abhydrolase domain containing 4	107					lipid catabolic process		hydrolase activity			central_nervous_system(1)	1	all_cancers(95;5.49e-05)			GBM - Glioblastoma multiforme(265;0.0153)		TGGCTTCGGGCGAAGCTCAAG	0.607												
ABHD4	63874	broad.mit.edu	37	14	23072664	23072664	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:23072664A>C	uc001wgm.2	+	3	551	c.482A>C	c.(481-483)GAT>GCT	p.D161A	ABHD4_uc010tmz.1_Missense_Mutation_p.D161A|ABHD4_uc010tna.1_Missense_Mutation_p.D161A|ABHD4_uc010tnb.1_RNA	NM_022060	NP_071343	Q8TB40	ABHD4_HUMAN	abhydrolase domain containing 4	161					lipid catabolic process		hydrolase activity			central_nervous_system(1)	1	all_cancers(95;5.49e-05)			GBM - Glioblastoma multiforme(265;0.0153)		AAGTACCCTGATAGGTAATAA	0.502												
REM2	161253	broad.mit.edu	37	14	23354218	23354218	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:23354218A>C	uc001whf.1	+	2	504	c.439A>C	c.(439-441)AAC>CAC	p.N147H	REM2_uc010tnd.1_Missense_Mutation_p.N139H	NM_173527	NP_775798	Q8IYK8	REM2_HUMAN	rad and gem related GTP binding protein 2	147					regulation of transcription, DNA-dependent|small GTPase mediated signal transduction	intracellular|plasma membrane	ATP binding|GTP binding|transcription factor binding			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.012)		CGAACCGGAGAACCCAGGTAT	0.617												
CDH24	64403	broad.mit.edu	37	14	23519067	23519067	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:23519067G>A	uc001wil.2	-	10	1823	c.1563C>T	c.(1561-1563)TAC>TAT	p.Y521Y	CDH24_uc001wik.3_RNA|CDH24_uc010akf.2_Silent_p.Y483Y	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	521	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		CAAAAGTATCGTAGGGCTCAG	0.597												
ACIN1	22985	broad.mit.edu	37	14	23549358	23549358	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:23549358G>A	uc001wit.3	-	6	1688	c.1360C>T	c.(1360-1362)CCT>TCT	p.P454S	ACIN1_uc001wis.3_Missense_Mutation_p.P136S|ACIN1_uc010akg.2_Missense_Mutation_p.P454S|ACIN1_uc010tnj.1_Missense_Mutation_p.P414S	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	454					apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		GTATTAGGAGGAGATAACTGA	0.502												
EFS	10278	broad.mit.edu	37	14	23828545	23828545	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:23828545T>C	uc001wjo.2	-	4	1750	c.1142A>G	c.(1141-1143)TAT>TGT	p.Y381C	EFS_uc001wjp.2_Missense_Mutation_p.Y288C|EFS_uc010tnm.1_Missense_Mutation_p.Y212C	NM_005864	NP_005855	O43281	EFS_HUMAN	embryonal Fyn-associated substrate isoform 1	381					cell adhesion|intracellular signal transduction	cytoplasm	SH3 domain binding			large_intestine(1)	1	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00649)		GACATAGTCATACTCCTCGGC	0.642												
MYH6	4624	broad.mit.edu	37	14	23861786	23861786	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:23861786T>C	uc001wjv.2	-	25	3394	c.3327A>G	c.(3325-3327)AAA>AAG	p.K1109K		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1109	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TTTCCTTCAGTTTCTTCTGTA	0.502												
MYH7	4625	broad.mit.edu	37	14	23885260	23885260	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:23885260C>T	uc001wjx.2	-	34	5012	c.4906G>A	c.(4906-4908)GCC>ACC	p.A1636T		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1636	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GCCTCGGCGGCCATGCGGTTG	0.607												
NGDN	25983	broad.mit.edu	37	14	23946446	23946446	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:23946446G>A	uc001wjy.2	+	9	778	c.751G>A	c.(751-753)GTC>ATC	p.V251I	NGDN_uc001wjz.2_Missense_Mutation_p.V251I|NGDN_uc001wka.2_RNA	NM_001042635	NP_001036100	Q8NEJ9	NGDN_HUMAN	neuroguidin isoform 1	251					regulation of translation	axon|cytoplasm|dendrite|filopodium|nucleus					0	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		GCGTTTGAGCGTCAGTAAGCG	0.498												
CPNE6	9362	broad.mit.edu	37	14	24542843	24542843	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:24542843C>T	uc001wll.2	+	3	403	c.304C>T	c.(304-306)CGA>TGA	p.R102*	CPNE6_uc010tnv.1_Nonsense_Mutation_p.R157*|CPNE6_uc001wlm.2_5'UTR|CPNE6_uc001wln.2_5'Flank	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	102	C2 1.				lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		CACCAGCCCCCGAAATGATAC	0.607												
DCAF11	80344	broad.mit.edu	37	14	24588368	24588368	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:24588368G>A	uc001wlv.2	+	9	1074	c.794G>A	c.(793-795)CGC>CAC	p.R265H	DCAF11_uc001wlw.2_Missense_Mutation_p.R265H|DCAF11_uc001wlz.2_Missense_Mutation_p.R165H|DCAF11_uc001wly.2_Missense_Mutation_p.R221H|DCAF11_uc001wme.2_Missense_Mutation_p.R225H|DCAF11_uc010tny.1_Missense_Mutation_p.R132H|DCAF11_uc001wmd.2_Missense_Mutation_p.R265H|DCAF11_uc001wmc.2_Missense_Mutation_p.R165H|DCAF11_uc001wmb.3_Missense_Mutation_p.R239H|DCAF11_uc001wma.3_Missense_Mutation_p.R265H	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	265	WD 3.					CUL4 RING ubiquitin ligase complex	protein binding				0						GATGAGCGTCGCTTTGCTGTC	0.458												
IRF9	10379	broad.mit.edu	37	14	24634066	24634066	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:24634066T>C	uc001wmq.2	+	7	1020	c.893T>C	c.(892-894)ATC>ACC	p.I298T	RNF31_uc001wmp.2_RNA|IRF9_uc010alj.2_Intron	NM_006084	NP_006075	Q00978	IRF9_HUMAN	interferon-stimulated transcription factor 3,	298					interferon-gamma-mediated signaling pathway|response to virus|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|nucleoplasm	DNA binding|identical protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.00853)		CCCATCCCCATCTCCTGGAAT	0.657												
GMPR2	51292	broad.mit.edu	37	14	24707913	24707913	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:24707913G>T	uc001wnr.2	+	10	1358	c.976G>T	c.(976-978)GAG>TAG	p.E326*	GMPR2_uc001wnv.2_Nonsense_Mutation_p.E163*|GMPR2_uc001wns.2_Nonsense_Mutation_p.E326*|GMPR2_uc001wnt.2_Nonsense_Mutation_p.E293*|GMPR2_uc001wnu.2_Nonsense_Mutation_p.E351*|GMPR2_uc001wnw.2_Nonsense_Mutation_p.E326*|GMPR2_uc010all.2_Nonsense_Mutation_p.E298*|GMPR2_uc001wnx.2_Nonsense_Mutation_p.E344*|GMPR2_uc010tod.1_Nonsense_Mutation_p.E293*|GMPR2_uc010alk.1_Nonsense_Mutation_p.E387*|GMPR2_uc010toe.1_Nonsense_Mutation_p.E387*	NM_001002001	NP_001002001	Q9P2T1	GMPR2_HUMAN	guanosine monophosphate reductase 2 isoform 2	326					nucleotide metabolic process|purine base metabolic process|purine-containing compound salvage	cytosol	GMP reductase activity|metal ion binding			ovary(3)	3				GBM - Glioblastoma multiforme(265;0.0181)		TAAGCTCAAAGAGTTGAGCAG	0.512												
TGM1	7051	broad.mit.edu	37	14	24723893	24723893	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:24723893G>A	uc001wod.2	-	13	2189	c.2065C>T	c.(2065-2067)CGC>TGC	p.R689C	TGM1_uc010tog.1_Missense_Mutation_p.R247C	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	689					cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	TCTGGGGTGCGCAGACGGAAG	0.632												
C14orf21	161424	broad.mit.edu	37	14	24773340	24773340	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:24773340G>A	uc001wol.1	+	8	1567	c.1504G>A	c.(1504-1506)GTA>ATA	p.V502I	C14orf21_uc001wom.1_Missense_Mutation_p.V53I	NM_174913	NP_777573	Q86U38	CN021_HUMAN	hypothetical protein LOC161424	502							RNA binding			breast(2)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(265;0.0185)		TCCTGGTCTTGTACTTCGAAG	0.602												
FOXG1	2290	broad.mit.edu	37	14	29237117	29237117	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:29237117T>C	uc001wqe.2	+	1	831	c.632T>C	c.(631-633)ATC>ACC	p.I211T		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	211	Fork-head.				axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		TACGAGTTCATCATGAAGAAC	0.572												
FOXG1	2290	broad.mit.edu	37	14	29237605	29237605	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:29237605T>C	uc001wqe.2	+	1	1319	c.1120T>C	c.(1120-1122)TAC>CAC	p.Y374H		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	374					axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		GGAGATCCCGTACGCCACGCA	0.677												
PRKD1	5587	broad.mit.edu	37	14	30066890	30066890	+	Silent	SNP	G	G	A	rs147092748		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:30066890G>A	uc001wqh.2	-	16	2422	c.2241C>T	c.(2239-2241)CCC>CCT	p.P747P		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	747	Protein kinase.				cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		CCAGGTAAGCGGGGGTACCCA	0.488												
HECTD1	25831	broad.mit.edu	37	14	31597063	31597063	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:31597063T>C	uc001wrc.1	-	26	5398	c.4909A>G	c.(4909-4911)ACT>GCT	p.T1637A	HECTD1_uc001wrb.1_5'UTR|HECTD1_uc001wrd.1_Missense_Mutation_p.T1105A	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	1637	Ser-rich.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		GTGGTTAAAGTGTTACTTAAA	0.373												
HECTD1	25831	broad.mit.edu	37	14	31597105	31597105	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:31597105T>C	uc001wrc.1	-	26	5356	c.4867A>G	c.(4867-4869)ACA>GCA	p.T1623A	HECTD1_uc001wrb.1_5'UTR|HECTD1_uc001wrd.1_Missense_Mutation_p.T1091A	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	1623	Ser-rich.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		GTTGTTGCTGTAGCTACATTG	0.433												
HECTD1	25831	broad.mit.edu	37	14	31598572	31598572	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:31598572T>C	uc001wrc.1	-	25	4494	c.4005A>G	c.(4003-4005)GCA>GCG	p.A1335A	HECTD1_uc001wrb.1_5'Flank|HECTD1_uc001wrd.1_Intron	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	1335	MIB/HERC2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		CGTACCCTGGTGCAAGCTTGA	0.507												
HECTD1	25831	broad.mit.edu	37	14	31605831	31605831	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:31605831G>A	uc001wrc.1	-	20	3509	c.3020C>T	c.(3019-3021)CCT>CTT	p.P1007L	HECTD1_uc001wrd.1_Missense_Mutation_p.P522L	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	1007					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		AGTTTCACCAGGTGCACGTTC	0.403												
ARHGAP5	394	broad.mit.edu	37	14	32562839	32562839	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:32562839A>G	uc001wrl.2	+	2	3203	c.2964A>G	c.(2962-2964)CCA>CCG	p.P988P	ARHGAP5_uc001wrm.2_Silent_p.P988P|ARHGAP5_uc001wrn.2_Silent_p.P988P|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	988					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		CAGAAGCACCACCTCCTTATA	0.413												
AKAP6	9472	broad.mit.edu	37	14	33005003	33005003	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:33005003A>G	uc001wrq.2	+	3	738	c.568A>G	c.(568-570)ACA>GCA	p.T190A	AKAP6_uc010aml.2_Missense_Mutation_p.T187A	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	190					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		CTCTGAAGAGACAAAAGAGGT	0.453												
AKAP6	9472	broad.mit.edu	37	14	33015103	33015103	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:33015103T>C	uc001wrq.2	+	4	1414	c.1244T>C	c.(1243-1245)GTT>GCT	p.V415A	AKAP6_uc010aml.2_Missense_Mutation_p.V412A	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	415					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AGGCAAATGGTTGATCTAAAG	0.453												
BAZ1A	11177	broad.mit.edu	37	14	35245571	35245571	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:35245571G>A	uc001wsk.2	-	18	2955	c.2387C>T	c.(2386-2388)GCC>GTC	p.A796V	BAZ1A_uc001wsl.2_Missense_Mutation_p.A764V	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	796	Interaction with SMARCA5.				chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		ACAGGCTATGGCACTTTGGAT	0.413												
PPP2R3C	55012	broad.mit.edu	37	14	35577396	35577396	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:35577396A>G	uc001wss.2	-	5	805	c.451T>C	c.(451-453)TCA>CCA	p.S151P	PPP2R3C_uc001wst.2_Missense_Mutation_p.S35P|PPP2R3C_uc010tpr.1_Missense_Mutation_p.S35P|PPP2R3C_uc001wsu.2_RNA|PPP2R3C_uc010amn.1_Intron|uc001wsv.1_Intron|PPP2R3C_uc001wsw.2_Missense_Mutation_p.S151P|PPP2R3C_uc001wsx.1_Missense_Mutation_p.S151P	NM_017917	NP_060387	Q969Q6	P2R3C_HUMAN	serine/threonine-protein phosphatase 2A	151						centrosome|nucleus	calcium ion binding			ovary(1)	1	Breast(36;0.0545)|Hepatocellular(127;0.158)|Prostate(35;0.184)		Lung(238;8.62e-06)|LUAD - Lung adenocarcinoma(48;1.42e-05)|Epithelial(34;0.0177)|all cancers(34;0.0491)	GBM - Glioblastoma multiforme(112;0.0803)		CTTCCATATGAATCTGTATGA	0.318												
INSM2	84684	broad.mit.edu	37	14	36004894	36004894	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:36004894T>C	uc001wth.1	+	1	1647	c.1436T>C	c.(1435-1437)TTC>TCC	p.F479S		NM_032594	NP_115983	Q96T92	INSM2_HUMAN	insulinoma-associated protein IA-6	479	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			lung(1)|skin(1)	2	Breast(36;0.122)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(9;2.16e-07)|Lung(238;2.63e-07)|Epithelial(34;0.00145)|all cancers(34;0.00452)	GBM - Glioblastoma multiforme(112;0.0223)		GGAGCGCACTTCCCTACAGCA	0.687												
CTAGE5	4253	broad.mit.edu	37	14	39782647	39782647	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:39782647T>C	uc001wvg.3	+	14	1631	c.1295_splice	c.e14+2	p.R432_splice	CTAGE5_uc010tqe.1_Splice_Site_p.R394_splice|CTAGE5_uc001wuz.3_Splice_Site_p.R420_splice|CTAGE5_uc001wuy.3_Splice_Site_p.R352_splice|CTAGE5_uc001wvb.3_Splice_Site_p.R403_splice|CTAGE5_uc001wvc.3_Splice_Site_p.R377_splice|CTAGE5_uc001wva.3_Splice_Site_p.R403_splice|CTAGE5_uc001wvh.3_Splice_Site_p.R432_splice|CTAGE5_uc001wvf.3_Splice_Site_p.R357_splice|CTAGE5_uc001wvi.3_Splice_Site_p.R437_splice|CTAGE5_uc010amz.2_Splice_Site_p.R48_splice|CTAGE5_uc001wvj.3_Splice_Site_p.R403_splice	NM_005930	NP_005921	O15320	CTGE5_HUMAN	CTAGE family, member 5 isoform 1								enzyme activator activity|protein binding				0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0475)		GACCTATAGGTATTAAATACA	0.299												
C14orf28	122525	broad.mit.edu	37	14	45370048	45370048	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:45370048A>G	uc001wvo.2	+	2	676	c.410A>G	c.(409-411)GAT>GGT	p.D137G	C14orf28_uc001wvp.1_Missense_Mutation_p.D137G	NM_001017923	NP_001017923	Q4W4Y0	CN028_HUMAN	hypothetical protein LOC122525	137										ovary(1)	1						AATGAGCATGATAATTTTACA	0.388												
FAM179B	23116	broad.mit.edu	37	14	45542710	45542710	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:45542710T>C	uc001wvv.2	+	19	5318	c.5109T>C	c.(5107-5109)CAT>CAC	p.H1703H	FAM179B_uc001wvw.2_Silent_p.H1756H|FAM179B_uc010anc.2_RNA	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	1703							binding			skin(2)|upper_aerodigestive_tract(1)	3						AACCACCACATATCAAAAAGA	0.348												
FKBP3	2287	broad.mit.edu	37	14	45590703	45590703	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:45590703T>C	uc010tqf.1	-	4	512	c.439A>G	c.(439-441)ACT>GCT	p.T147A		NM_002013	NP_002004	Q00688	FKBP3_HUMAN	FK506 binding protein 3, 25kDa	147	PPIase FKBP-type.				protein folding	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|receptor activity				0						TGAATATTAGTATCAAAAACA	0.363												
FANCM	57697	broad.mit.edu	37	14	45636264	45636264	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:45636264A>G	uc001wwd.3	+	11	1999	c.1900A>G	c.(1900-1902)AAC>GAC	p.N634D	FANCM_uc001wwc.2_Missense_Mutation_p.N634D|FANCM_uc010anf.2_Missense_Mutation_p.N608D|FANCM_uc001wwe.3_Missense_Mutation_p.N170D	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	634					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						TGATGGAATCAACCCAAAATT	0.393								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia			
FANCM	57697	broad.mit.edu	37	14	45645728	45645728	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:45645728T>C	uc001wwd.3	+	14	3870	c.3771T>C	c.(3769-3771)GAT>GAC	p.D1257D	FANCM_uc010anf.2_Silent_p.D1231D|FANCM_uc001wwe.3_Silent_p.D793D|FANCM_uc010ang.2_Silent_p.D471D	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	1257					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						GACCTCTAGATGATCTATATG	0.313								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia			
FANCM	57697	broad.mit.edu	37	14	45668046	45668046	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:45668046A>G	uc001wwd.3	+	22	6015	c.5916A>G	c.(5914-5916)GCA>GCG	p.A1972A	FANCM_uc010anf.2_Silent_p.A1946A|FANCM_uc001wwe.3_Silent_p.A1508A|FANCM_uc010ang.2_Silent_p.A1221A	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	1972	Interaction with FAAP24 and EME1.				DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						AAAGTGAGGCACTCCAGTTTT	0.343								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia			
KLHDC1	122773	broad.mit.edu	37	14	50195672	50195672	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:50195672C>T	uc001www.2	+	7	624	c.596C>T	c.(595-597)GCG>GTG	p.A199V	SDCCAG1_uc010anj.1_Intron|KLHDC1_uc010tqg.1_Missense_Mutation_p.A154V|KLHDC1_uc010tqh.1_Missense_Mutation_p.A114V	NM_172193	NP_751943	Q8N7A1	KLDC1_HUMAN	kelch domain containing 1	199						cytoplasm				pancreas(1)	1	all_epithelial(31;0.00244)|Breast(41;0.00964)					CCACGAGCCGCGCATACATGT	0.413												
KLHDC2	23588	broad.mit.edu	37	14	50246358	50246358	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:50246358G>A	uc001wwx.2	+	7	1079	c.679G>A	c.(679-681)GGA>AGA	p.G227R	SDCCAG1_uc010anj.1_Intron|KLHDC2_uc001wwy.2_Missense_Mutation_p.G227R|KLHDC2_uc010anp.2_Missense_Mutation_p.G227R	NM_014315	NP_055130	Q9Y2U9	KLDC2_HUMAN	kelch domain containing 2	227						nucleus	protein binding			ovary(1)	1	all_epithelial(31;0.000959)|Breast(41;0.0117)					TGCAACTGTCGGAAATAGAGG	0.393												
SDCCAG1	9147	broad.mit.edu	37	14	50255966	50255966	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:50255966A>G	uc001wxc.2	-	28	2861	c.2793T>C	c.(2791-2793)GGT>GGC	p.G931G	SDCCAG1_uc010anj.1_Silent_p.G931G|SDCCAG1_uc001wwz.2_Silent_p.G131G|SDCCAG1_uc001wxa.2_Silent_p.G211G|SDCCAG1_uc010tqi.1_Silent_p.G910G|SDCCAG1_uc001wxe.2_Silent_p.G889G	NM_004713	NP_004704	O60524	NEMF_HUMAN	serologically defined colon cancer antigen 1	931						cytoplasm|nucleus					0	all_epithelial(31;0.000822)|Breast(41;0.0117)	all_lung(585;1.02e-05)		OV - Ovarian serous cystadenocarcinoma(311;5.99e-34)		CCCTCTGTCCACCTCTAGGTT	0.418												
ATP5S	27109	broad.mit.edu	37	14	50788253	50788253	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:50788253A>G	uc001wxw.1	+	2	785	c.93A>G	c.(91-93)AAA>AAG	p.K31K	ATP5S_uc001wxv.2_Silent_p.K31K|ATP5S_uc001wxx.1_Silent_p.K31K|ATP5S_uc010ant.1_Intron	NM_001003803	NP_001003803	Q99766	ATP5S_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	31					ATP biosynthetic process	mitochondrial inner membrane|proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity			ovary(1)|skin(1)	2	all_epithelial(31;0.000636)|Breast(41;0.0102)			OV - Ovarian serous cystadenocarcinoma(311;0.0685)		GCGTAAAGAAACTCCCATGGT	0.398												
NID2	22795	broad.mit.edu	37	14	52520419	52520419	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:52520419G>A	uc001wzo.2	-	5	1541	c.1307C>T	c.(1306-1308)CCC>CTC	p.P436L	NID2_uc010tqs.1_Missense_Mutation_p.P436L|NID2_uc010tqt.1_Missense_Mutation_p.P436L|NID2_uc001wzp.2_Missense_Mutation_p.P436L	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	436						basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					ATGAGCTGGGGGAACATCCAT	0.547												
PTGDR	5729	broad.mit.edu	37	14	52735128	52735128	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:52735128A>G	uc001wzq.2	+	1	698	c.596A>G	c.(595-597)TAC>TGC	p.Y199C		NM_000953	NP_000944	Q13258	PD2R_HUMAN	prostaglandin D2 receptor	199	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	prostaglandin D receptor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Breast(41;0.0639)|all_epithelial(31;0.0887)				Nedocromil(DB00716)	GTGCTGGGGTACTCTGTGCTC	0.632												
GPR137C	283554	broad.mit.edu	37	14	53101670	53101670	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:53101670A>G	uc001wzu.3	+	7	1127	c.1127A>G	c.(1126-1128)CAA>CGA	p.Q376R	GPR137C_uc001wzt.3_Missense_Mutation_p.Q392R	NM_001099652	NP_001093122	Q8N3F9	G137C_HUMAN	G protein-coupled receptor 137C	376	Cytoplasmic (Potential).					integral to membrane					0	Breast(41;0.0716)					CCAAATTCGCAAAGTTTGGGC	0.418												
FERMT2	10979	broad.mit.edu	37	14	53325164	53325164	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:53325164T>C	uc001xad.2	-	15	2029	c.1974A>G	c.(1972-1974)ACA>ACG	p.T658T	FERMT2_uc001xac.2_Silent_p.T665T|FERMT2_uc001xae.2_Silent_p.T658T	NM_006832	NP_006823	Q96AC1	FERM2_HUMAN	fermitin family homolog 2 isoform 1	658	FERM.				actin cytoskeleton organization|cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytosol|focal adhesion|stress fiber	binding				0	Breast(41;0.0342)					CTTTTGCACGTGTTGAGAGAA	0.398												
BMP4	652	broad.mit.edu	37	14	54416799	54416799	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:54416799A>G	uc001xal.3	-	3	1365	c.1178T>C	c.(1177-1179)GTA>GCA	p.V393A	BMP4_uc010aoh.2_Missense_Mutation_p.V393A|BMP4_uc001xao.3_Missense_Mutation_p.V393A|BMP4_uc001xan.3_Missense_Mutation_p.V393A	NM_130851	NP_570912	P12644	BMP4_HUMAN	bone morphogenetic protein 4 preproprotein	393					activation of MAPKK activity|blood vessel endothelial cell proliferation involved in sprouting angiogenesis|BMP signaling pathway involved in heart induction|BMP signaling pathway involved in nephric duct formation|branching involved in ureteric bud morphogenesis|bronchus development|bud dilation involved in lung branching|cardiac septum development|cartilage development|endocardial cushion development|epithelial cell proliferation involved in lung morphogenesis|intermediate mesodermal cell differentiation|lung alveolus development|lymphoid progenitor cell differentiation|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway|negative regulation of branching involved in ureteric bud morphogenesis|negative regulation of cell proliferation involved in heart morphogenesis|negative regulation of glomerular mesangial cell proliferation|negative regulation of glomerulus development|negative regulation of immature T cell proliferation in thymus|negative regulation of MAP kinase activity|negative regulation of metanephric comma-shaped body morphogenesis|negative regulation of metanephric S-shaped body morphogenesis|negative regulation of mitosis|negative regulation of myoblast differentiation|negative regulation of phosphorylation|negative regulation of striated muscle tissue development|negative regulation of thymocyte apoptosis|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cardiac muscle fiber development|positive regulation of cartilage development|positive regulation of collagen biosynthetic process|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of kidney development|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|protein localization to nucleus|pulmonary artery endothelial tube morphogenesis|secondary heart field specification|SMAD protein signal transduction|specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway|steroid hormone mediated signaling pathway	extracellular space|proteinaceous extracellular matrix	BMP receptor binding|chemoattractant activity|cytokine activity|growth factor activity				0						ATTTTTCAGTACCACCTTATC	0.428												
CGRRF1	10668	broad.mit.edu	37	14	54976688	54976688	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:54976688T>C	uc001xay.2	+	1	102	c.11T>C	c.(10-12)GTG>GCG	p.V4A	CGRRF1_uc010tra.1_Missense_Mutation_p.V4A|CGRRF1_uc001xaz.2_RNA	NM_006568	NP_006559	Q99675	CGRF1_HUMAN	cell growth regulator with ring finger domain 1	4					cell cycle arrest|negative regulation of cell proliferation|response to stress		zinc ion binding			ovary(1)	1						ATGGCTGCGGTGTTTCTGGTA	0.373											OREG0022692	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
WDHD1	11169	broad.mit.edu	37	14	55434067	55434067	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:55434067G>A	uc001xbm.1	-	17	2187	c.2109C>T	c.(2107-2109)CGC>CGT	p.R703R	WDHD1_uc010aom.1_Silent_p.R220R|WDHD1_uc001xbn.1_Silent_p.R580R	NM_007086	NP_009017	O75717	WDHD1_HUMAN	WD repeat and HMG-box DNA binding protein 1	703						cytoplasm|nucleoplasm	DNA binding			skin(1)	1						CAACAGCAGGGCGTGGAAGGG	0.388												
EXOC5	10640	broad.mit.edu	37	14	57700561	57700561	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:57700561A>G	uc001xct.2	-	9	1006	c.755T>C	c.(754-756)ATA>ACA	p.I252T	EXOC5_uc001xcs.2_5'Flank|EXOC5_uc010trg.1_Missense_Mutation_p.I197T|EXOC5_uc010trh.1_Missense_Mutation_p.I187T	NM_006544	NP_006535	O00471	EXOC5_HUMAN	SEC10 protein	252					exocytosis|post-Golgi vesicle-mediated transport|protein transport|vesicle docking	cytoplasm				ovary(2)|breast(1)	3						TTGACAGAGTATTCCAGCGTC	0.318												
NAA30	122830	broad.mit.edu	37	14	57863507	57863507	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:57863507G>A	uc001xcx.3	+	3	963	c.809G>A	c.(808-810)TGC>TAC	p.C270Y	NAA30_uc010trk.1_Missense_Mutation_p.C12Y|NAA30_uc010aow.2_RNA	NM_001011713	NP_001011713	Q147X3	NAA30_HUMAN	N-acetyltransferase 12	270	N-acetyltransferase.					cytoplasm	peptide alpha-N-acetyltransferase activity			skin(1)	1						GCCATCGTTTGCAAGTTGGAT	0.398												
SLC35F4	341880	broad.mit.edu	37	14	58056071	58056071	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:58056071T>C	uc001xdb.1	-	3	558	c.558A>G	c.(556-558)AAA>AAG	p.K186K	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_Silent_p.K27K	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						TATAAGTAATTTTTACAATCT	0.403												
DACT1	51339	broad.mit.edu	37	14	59112667	59112667	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:59112667C>T	uc001xdw.2	+	4	1490	c.1326C>T	c.(1324-1326)GGC>GGT	p.G442G	DACT1_uc010trv.1_Silent_p.G161G|DACT1_uc001xdx.2_Silent_p.G405G|DACT1_uc010trw.1_Silent_p.G161G	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	442					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						GCCCCTCAGGCGCTGCCTCCG	0.597												
DAAM1	23002	broad.mit.edu	37	14	59814284	59814284	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:59814284A>G	uc001xdz.1	+	18	2258	c.2133A>G	c.(2131-2133)AAA>AAG	p.K711K	DAAM1_uc001xea.1_Silent_p.K701K	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	711	FH2.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		ACGAAATCAAACGGGCAATTC	0.378												
GPR135	64582	broad.mit.edu	37	14	59930515	59930515	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:59930515G>A	uc010apj.2	-	1	1545	c.1430C>T	c.(1429-1431)CCG>CTG	p.P477L	GPR135_uc001xed.2_RNA	NM_022571	NP_072093	Q8IZ08	GP135_HUMAN	G protein-coupled receptor 135	477	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0				OV - Ovarian serous cystadenocarcinoma(108;0.134)		TGCCGTCACCGGCTCTGGTGG	0.567												
GPR135	64582	broad.mit.edu	37	14	59930686	59930686	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:59930686G>A	uc010apj.2	-	1	1374	c.1259C>T	c.(1258-1260)CCG>CTG	p.P420L	GPR135_uc001xed.2_RNA	NM_022571	NP_072093	Q8IZ08	GP135_HUMAN	G protein-coupled receptor 135	420	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0				OV - Ovarian serous cystadenocarcinoma(108;0.134)		TTGCAGACCCGGGCCCTGGCT	0.637												
JKAMP	51528	broad.mit.edu	37	14	59961870	59961870	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:59961870A>G	uc001xei.3	+	4	930	c.428A>G	c.(427-429)TAC>TGC	p.Y143C	JKAMP_uc001xef.3_Missense_Mutation_p.Y129C|JKAMP_uc001xeh.3_Missense_Mutation_p.Y123C|JKAMP_uc001xeg.3_Missense_Mutation_p.Y137C|JKAMP_uc010try.1_Missense_Mutation_p.Y66C|JKAMP_uc001xej.3_Missense_Mutation_p.Y66C	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	144	Lumenal (Potential).				ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						TCTGACTGGTACACGATGCTT	0.408												
RTN1	6252	broad.mit.edu	37	14	60212668	60212668	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:60212668G>A	uc001xen.1	-	2	982	c.773C>T	c.(772-774)TCC>TTC	p.S258F		NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	258					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		AGCAAATGTGGATTCTTCCAA	0.448												
SIX4	51804	broad.mit.edu	37	14	61186582	61186582	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:61186582C>A	uc001xfc.2	-	2	1445	c.1445G>T	c.(1444-1446)GGC>GTC	p.G482V	SIX4_uc010app.1_Missense_Mutation_p.G474V	NM_017420	NP_059116	Q9UIU6	SIX4_HUMAN	sine oculis homeobox homolog 4	482						nucleus				breast(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0275)		CTGGACAATGCCATACTGGTT	0.502												
HIF1A	3091	broad.mit.edu	37	14	62188501	62188501	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:62188501T>C	uc001xfq.2	+	4	821	c.417T>C	c.(415-417)TGT>TGC	p.C139C	HIF1A_uc010tsc.1_Silent_p.C56C|HIF1A_uc001xfr.2_Silent_p.C139C|HIF1A_uc001xfs.2_Silent_p.C140C	NM_001530	NP_001521	Q16665	HIF1A_HUMAN	hypoxia-inducible factor 1, alpha subunit	139	Interaction with TSGA10 (By similarity).|PAS 1.				cellular response to hypoxia|collagen metabolic process|connective tissue replacement involved in inflammatory response wound healing|elastin metabolic process|epithelial to mesenchymal transition|oxygen homeostasis|positive regulation of chemokine production|positive regulation of epithelial cell migration|positive regulation of hormone biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|regulation of transforming growth factor-beta2 production	cytoplasm|nucleolus|transcription factor complex	histone acetyltransferase binding|Hsp90 protein binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			kidney(3)|lung(1)	4				OV - Ovarian serous cystadenocarcinoma(108;1.62e-09)|BRCA - Breast invasive adenocarcinoma(234;0.189)		CTCATCCATGTGACCATGAGG	0.308												
SYNE2	23224	broad.mit.edu	37	14	64591849	64591849	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:64591849A>G	uc001xgm.2	+	71	13705	c.13475A>G	c.(13474-13476)TAC>TGC	p.Y4492C	SYNE2_uc001xgl.2_Missense_Mutation_p.Y4492C|SYNE2_uc010apy.2_Missense_Mutation_p.Y877C|SYNE2_uc010apz.1_Missense_Mutation_p.Y384C	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4492	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AACTTTAGATACCCAACAACT	0.423												
ZBTB1	22890	broad.mit.edu	37	14	64988891	64988891	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:64988891T>C	uc001xhh.3	+	4	1100	c.669T>C	c.(667-669)TTT>TTC	p.F223F	ZBTB1_uc010aqg.2_Silent_p.F223F|ZBTB1_uc001xhi.2_Silent_p.F223F	NM_001123329	NP_001116801	Q9Y2K1	ZBTB1_HUMAN	zinc finger and BTB domain containing 1 isoform	223	C2H2-type 1; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		all_lung(585;0.000567)|Myeloproliferative disorder(585;0.0255)|all_neural(303;0.0294)		UCEC - Uterine corpus endometrioid carcinoma (185;0.0182)|all cancers(60;3.78e-43)|OV - Ovarian serous cystadenocarcinoma(108;1.22e-20)|BRCA - Breast invasive adenocarcinoma(234;6.75e-06)|KIRC - Kidney renal clear cell carcinoma(182;0.00269)|STAD - Stomach adenocarcinoma(64;0.012)		GCTGTGGATTTGGCTTTAGCT	0.358												
SPTB	6710	broad.mit.edu	37	14	65260381	65260381	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:65260381T>C	uc001xht.2	-	13	2054	c.2000A>G	c.(1999-2001)AAA>AGA	p.K667R	SPTB_uc001xhr.2_Missense_Mutation_p.K667R|SPTB_uc001xhs.2_Missense_Mutation_p.K667R|SPTB_uc001xhu.2_Missense_Mutation_p.K667R	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	667	Spectrin 4.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		GGTCAGGTCTTTGCCATAGTC	0.537												
RAB15	376267	broad.mit.edu	37	14	65418332	65418332	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:65418332G>A	uc001xhz.2	-	3	316	c.235C>T	c.(235-237)CGG>TGG	p.R79W	FNTB_uc010tsl.1_Intron|FNTB_uc010tsm.1_Intron|RAB15_uc010aqk.2_RNA	NM_198686	NP_941959	P59190	RAB15_HUMAN	RAB15, member RAS onocogene family	79					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			ovary(1)	1				all cancers(60;0.00136)|OV - Ovarian serous cystadenocarcinoma(108;0.00593)|BRCA - Breast invasive adenocarcinoma(234;0.0102)		TGGGCCCGCCGATAGTACTGC	0.582												
ZFYVE26	23503	broad.mit.edu	37	14	68250106	68250106	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:68250106T>C	uc001xka.2	-	21	3902	c.3763A>G	c.(3763-3765)ACT>GCT	p.T1255A	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Missense_Mutation_p.T1255A	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1255					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		TGGGCCAGAGTACCCAGACGA	0.582												
RAD51L1	5890	broad.mit.edu	37	14	68353896	68353896	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:68353896A>G	uc001xkf.1	+	7	795	c.731A>G	c.(730-732)TAT>TGT	p.Y244C	RAD51L1_uc010aqq.2_Missense_Mutation_p.Y244C|RAD51L1_uc001xkd.2_Missense_Mutation_p.Y244C|RAD51L1_uc010aqr.2_Missense_Mutation_p.Y125C|RAD51L1_uc001xke.2_Missense_Mutation_p.Y244C|RAD51L1_uc010aqs.1_Missense_Mutation_p.Y244C|RAD51L1_uc001xkg.1_Missense_Mutation_p.Y244C	NM_133509	NP_598193	O15315	RA51B_HUMAN	RAD51-like 1 isoform 3	244					blood coagulation|DNA repair|reciprocal meiotic recombination	nucleoplasm	ATP binding|DNA binding|DNA-dependent ATPase activity				0				UCEC - Uterine corpus endometrioid carcinoma (185;0.163)|all cancers(60;3.9e-06)|OV - Ovarian serous cystadenocarcinoma(108;0.000103)|BRCA - Breast invasive adenocarcinoma(234;0.000421)		TCCTTGAAGTATTTGGCTGAG	0.313			T	HMGA2	lipoma|uterine leiomyoma			Direct_reversal_of_damage|Homologous_recombination				
SIPA1L1	26037	broad.mit.edu	37	14	72056089	72056089	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:72056089T>C	uc001xms.2	+	2	1846	c.1498_splice	c.e2+2	p.E500_splice	SIPA1L1_uc001xmt.2_Splice_Site_p.E500_splice|SIPA1L1_uc001xmu.2_Splice_Site_p.E500_splice|SIPA1L1_uc001xmv.2_Splice_Site_p.E500_splice	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like						actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ACCAGAAGGGTAAGTAGAGAT	0.328												
SIPA1L1	26037	broad.mit.edu	37	14	72202057	72202057	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:72202057A>G	uc001xms.2	+	20	5483	c.5135A>G	c.(5134-5136)AAC>AGC	p.N1712S	SIPA1L1_uc001xmt.2_Missense_Mutation_p.N1691S|SIPA1L1_uc001xmu.2_Missense_Mutation_p.N1691S|SIPA1L1_uc001xmv.2_Missense_Mutation_p.N1712S|SIPA1L1_uc010ttm.1_Missense_Mutation_p.N1166S|SIPA1L1_uc001xmw.2_Missense_Mutation_p.N477S	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1712					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		GCTGCATCCAACAGTGATCAG	0.507												
RGS6	9628	broad.mit.edu	37	14	72985085	72985085	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:72985085A>C	uc001xna.3	+	15	1641	c.1118A>C	c.(1117-1119)AAG>ACG	p.K373T	RGS6_uc010ttn.1_Missense_Mutation_p.K373T|RGS6_uc001xmx.3_Missense_Mutation_p.K373T|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.K373T|RGS6_uc010ttp.1_Missense_Mutation_p.K304T|RGS6_uc001xmz.1_Missense_Mutation_p.K234T	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	373	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		CAAGATCTTAAGAAACAACCC	0.542												
RGS6	9628	broad.mit.edu	37	14	73002943	73002943	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:73002943G>A	uc001xna.3	+	16	1851	c.1328G>A	c.(1327-1329)CGG>CAG	p.R443Q	RGS6_uc010ttn.1_Missense_Mutation_p.R443Q|RGS6_uc001xmx.3_Missense_Mutation_p.R443Q|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.R443Q|RGS6_uc010ttp.1_Missense_Mutation_p.R374Q|RGS6_uc001xmz.1_Missense_Mutation_p.R304Q	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	443					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		CGCTTCCTCCGGTCAAATGCT	0.532												
RBM25	58517	broad.mit.edu	37	14	73544179	73544179	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:73544179A>G	uc001xno.2	+	4	467	c.259A>G	c.(259-261)ACC>GCC	p.T87A	RBM25_uc001xnn.3_Missense_Mutation_p.T87A|RBM25_uc010ttu.1_Missense_Mutation_p.T87A|RBM25_uc001xnp.2_5'UTR	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	87	RRM.				apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		TGGTCCTACTACCACTGTTTT	0.363												
PAPLN	89932	broad.mit.edu	37	14	73729153	73729153	+	Missense_Mutation	SNP	C	C	T	rs150310890	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:73729153C>T	uc010ttx.1	+	18	2504	c.2341C>T	c.(2341-2343)CGC>TGC	p.R781C	PAPLN_uc001xnw.3_Missense_Mutation_p.R754C|PAPLN_uc010arl.2_Intron|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.R765C|PAPLN_uc010arm.2_5'UTR|PAPLN_uc010arn.2_5'UTR	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	781	BPTI/Kunitz inhibitor.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		CCAATGTAACCGCTTCTGGTA	0.627												
HEATR4	399671	broad.mit.edu	37	14	73967394	73967394	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:73967394C>T	uc010tub.1	-	12	2468	c.2146G>A	c.(2146-2148)GCT>ACT	p.A716T	HEATR4_uc010tua.1_Missense_Mutation_p.A669T	NM_203309	NP_976054			HEAT repeat containing 4											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00386)|OV - Ovarian serous cystadenocarcinoma(108;0.0719)		AGGTAGAGAGCTTCCACACGC	0.517												
C14orf43	91748	broad.mit.edu	37	14	74206530	74206530	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:74206530G>T	uc001xot.2	-	2	965	c.182C>A	c.(181-183)CCT>CAT	p.P61H	C14orf43_uc001xou.2_Missense_Mutation_p.P61H|C14orf43_uc010tud.1_Missense_Mutation_p.P61H|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	61					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		CAGTTCCACAGGCTGAGAGGT	0.657												
C14orf45	80127	broad.mit.edu	37	14	74522353	74522353	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:74522353A>G	uc010tup.1	+	9	1476	c.1353A>G	c.(1351-1353)CGA>CGG	p.R451R	C14orf45_uc001xpm.1_RNA	NM_025057	NP_079333	Q8ND07	CN045_HUMAN	hypothetical protein LOC80127	451											0				BRCA - Breast invasive adenocarcinoma(234;0.00351)		AAGTATTGCGATTGCTCTTTG	0.363												
LIN52	91750	broad.mit.edu	37	14	74562660	74562660	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:74562660T>C	uc001xpp.2	+	3	126	c.116T>C	c.(115-117)GTT>GCT	p.V39A	LIN52_uc010asb.2_RNA	NM_001024674	NP_001019845	Q52LA3	LIN52_HUMAN	lin-52 homolog	39										breast(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00471)		GTACCAGGTGTTGCTGAATTT	0.239												
ABCD4	5826	broad.mit.edu	37	14	74754962	74754962	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:74754962A>G	uc001xpr.2	-	16	1659	c.1507T>C	c.(1507-1509)TCC>CCC	p.S503P	ABCD4_uc001xps.2_Missense_Mutation_p.S344P|ABCD4_uc001xpt.2_Missense_Mutation_p.S344P|ABCD4_uc010tur.1_Missense_Mutation_p.S399P	NM_005050	NP_005041	O14678	ABCD4_HUMAN	ATP-binding cassette, sub-family D, member 4	503	ABC transporter.					ATP-binding cassette (ABC) transporter complex|integral to membrane|peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			upper_aerodigestive_tract(2)|large_intestine(1)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00153)		ACCAAGTTGGACTGTAACAGA	0.562												
ABCD4	5826	broad.mit.edu	37	14	74757053	74757053	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:74757053G>A	uc001xpr.2	-	12	1420	c.1268C>T	c.(1267-1269)ACG>ATG	p.T423M	ABCD4_uc001xps.2_Missense_Mutation_p.T264M|ABCD4_uc001xpt.2_Missense_Mutation_p.T264M|ABCD4_uc010tur.1_Missense_Mutation_p.T319M|ABCD4_uc001xpu.2_Missense_Mutation_p.T160M	NM_005050	NP_005041	O14678	ABCD4_HUMAN	ATP-binding cassette, sub-family D, member 4	423	ABC transporter.|ATP (Potential).					ATP-binding cassette (ABC) transporter complex|integral to membrane|peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			upper_aerodigestive_tract(2)|large_intestine(1)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00153)		GCCAGTGCCCGTGTTGCCTGT	0.627											OREG0022800	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
ABCD4	5826	broad.mit.edu	37	14	74762622	74762622	+	Silent	SNP	G	G	A	rs149779191		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:74762622G>A	uc001xpr.2	-	6	755	c.603C>T	c.(601-603)AAC>AAT	p.N201N	ABCD4_uc001xps.2_Silent_p.N42N|ABCD4_uc001xpt.2_Silent_p.N42N|ABCD4_uc010tur.1_Silent_p.N114N|ABCD4_uc001xpu.2_5'UTR|ABCD4_uc001xpv.2_RNA	NM_005050	NP_005041	O14678	ABCD4_HUMAN	ATP-binding cassette, sub-family D, member 4	201	ABC transmembrane type-1.|Helical; (Potential).					ATP-binding cassette (ABC) transporter complex|integral to membrane|peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			upper_aerodigestive_tract(2)|large_intestine(1)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00153)		TCAAAGTTTTGTTCACCACGG	0.547												
YLPM1	56252	broad.mit.edu	37	14	75265004	75265004	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:75265004C>T	uc001xqj.3	+	5	3128	c.3004C>T	c.(3004-3006)CGG>TGG	p.R1002W	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	807	Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		AGGCCTGCCTCGGCCAGATAA	0.428												
MLH3	27030	broad.mit.edu	37	14	75515935	75515935	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:75515935C>T	uc001xrd.1	-	2	640	c.424G>A	c.(424-426)GCT>ACT	p.A142T	MLH3_uc001xre.1_Missense_Mutation_p.A142T|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	142					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		GTAGTCCCAGCGCTTGCTCTA	0.423								MMR				
BATF	10538	broad.mit.edu	37	14	76012903	76012903	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:76012903C>T	uc001xrr.2	+	3	509	c.267C>T	c.(265-267)CAC>CAT	p.H89H		NM_006399	NP_006390	Q16520	BATF_HUMAN	basic leucine zipper transcription factor,	89						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.028)		TGAACAGCCACGAGCCCCTGT	0.627												
FLVCR2	55640	broad.mit.edu	37	14	76088483	76088483	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:76088483A>G	uc001xrs.2	+	2	1107	c.731A>G	c.(730-732)GAC>GGC	p.D244G	FLVCR2_uc010tvd.1_Missense_Mutation_p.D39G	NM_017791	NP_060261	Q9UPI3	FLVC2_HUMAN	feline leukemia virus subgroup C cellular	244					transmembrane transport	integral to membrane|plasma membrane	heme binding|heme transporter activity				0				BRCA - Breast invasive adenocarcinoma(234;0.029)		GAAGACCGGGACGAGCTTGCC	0.458												
TGFB3	7043	broad.mit.edu	37	14	76427332	76427332	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:76427332G>T	uc001xsc.2	-	6	1870	c.1014C>A	c.(1012-1014)GGC>GGA	p.G338G		NM_003239	NP_003230	P10600	TGFB3_HUMAN	transforming growth factor, beta 3 precursor	338					cell growth|cell-cell junction organization|detection of hypoxia|face morphogenesis|in utero embryonic development|induction of apoptosis|lung alveolus development|mammary gland development|menstrual cycle phase|negative regulation of cell proliferation|negative regulation of DNA replication|negative regulation of macrophage cytokine production|negative regulation of neuron apoptosis|odontogenesis|ossification involved in bone remodeling|palate development|platelet activation|platelet degranulation|positive regulation of bone mineralization|positive regulation of cell division|positive regulation of collagen biosynthetic process|positive regulation of DNA replication|positive regulation of epithelial to mesenchymal transition|positive regulation of filopodium assembly|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of protein secretion|positive regulation of SMAD protein import into nucleus|positive regulation of transcription from RNA polymerase II promoter|response to progesterone stimulus|salivary gland morphogenesis|transforming growth factor beta receptor signaling pathway	extracellular matrix|platelet alpha granule lumen	growth factor activity|identical protein binding|transforming growth factor beta binding|type I transforming growth factor beta receptor binding|type II transforming growth factor beta receptor binding			breast(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0169)		TGGCATAGTAGCCCTTAGGTT	0.552												
C14orf118	55668	broad.mit.edu	37	14	76668165	76668165	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:76668165C>A	uc001xsh.2	+	10	1506	c.1420C>A	c.(1420-1422)CCA>ACA	p.P474T	C14orf118_uc001xsi.2_Missense_Mutation_p.P469T|C14orf118_uc001xsl.2_RNA|C14orf118_uc001xsn.1_RNA	NM_017926	NP_060396	Q9NWQ4	CN118_HUMAN	hypothetical protein LOC55668 isoform 1	474										ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.0172)		TTTTAAAATGCCACAAGAAAA	0.493												
POMT2	29954	broad.mit.edu	37	14	77745125	77745125	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:77745125A>G	uc001xti.2	-	19	2180	c.1979T>C	c.(1978-1980)GTC>GCC	p.V660A	POMT2_uc001xth.1_Missense_Mutation_p.V358A	NM_013382	NP_037514	Q9UKY4	POMT2_HUMAN	protein-O-mannosyltransferase 2	660	Helical; (Potential).				protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0292)		GAAGTAGAGGACCCGGCCCAT	0.607												
POMT2	29954	broad.mit.edu	37	14	77751306	77751306	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:77751306A>G	uc001xti.2	-	14	1764	c.1563T>C	c.(1561-1563)CAT>CAC	p.H521H	POMT2_uc001xth.1_Silent_p.H219H	NM_013382	NP_037514	Q9UKY4	POMT2_HUMAN	protein-O-mannosyltransferase 2	521	MIR 3.				protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0292)		TGGGATTGATATGGTCCTCCA	0.463												
VIPAR	63894	broad.mit.edu	37	14	77900221	77900221	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:77900221T>C	uc001xtt.1	-	17	1481	c.1143A>G	c.(1141-1143)CGA>CGG	p.R381R	VIPAR_uc001xtu.1_Silent_p.R381R|VIPAR_uc010tvj.1_Silent_p.R332R|VIPAR_uc001xtv.1_Silent_p.R381R	NM_022067	NP_071350	Q9H9C1	VIPAR_HUMAN	hypothetical protein LOC63894	381					endosome to lysosome transport|intracellular protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	early endosome|late endosome|recycling endosome	protein binding			central_nervous_system(1)	1						CATTCCAGGCTCGAAGCTTGG	0.498												
ISM2	145501	broad.mit.edu	37	14	77951099	77951099	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:77951099A>G	uc001xtz.2	-	2	379	c.305T>C	c.(304-306)GTT>GCT	p.V102A	ISM2_uc001xua.2_Missense_Mutation_p.V102A|ISM2_uc001xty.2_Missense_Mutation_p.V14A|ISM2_uc010tvl.1_Missense_Mutation_p.V102A	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	102						extracellular region				skin(1)	1						CAACGGAGTAACCTCTGGGGT	0.612												
NRXN3	9369	broad.mit.edu	37	14	79432495	79432495	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:79432495T>C	uc001xun.2	+	9	1895	c.1404T>C	c.(1402-1404)AAT>AAC	p.N468N	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.N593N	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	841	Laminin G-like 4.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TCATGTTTAATGGCCTTCTCT	0.463												
NRXN3	9369	broad.mit.edu	37	14	79432705	79432705	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:79432705T>C	uc001xun.2	+	9	2105	c.1614T>C	c.(1612-1614)AAT>AAC	p.N538N	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.N663N	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	911	Extracellular (Potential).|Laminin G-like 5.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TTCTCTTCAATAGTGGTGATG	0.478												
NRXN3	9369	broad.mit.edu	37	14	80328021	80328021	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:80328021C>T	uc001xun.2	+	17	3391	c.2900C>T	c.(2899-2901)CCG>CTG	p.P967L	NRXN3_uc001xum.1_RNA|NRXN3_uc001xup.2_RNA|NRXN3_uc001xuq.2_Missense_Mutation_p.P543L|NRXN3_uc010asw.2_Missense_Mutation_p.P365L|NRXN3_uc001xur.3_Missense_Mutation_p.P338L	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1549	Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CCCACGGAGCCGGGAATCAGA	0.602												
C14orf145	145508	broad.mit.edu	37	14	81259277	81259277	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:81259277T>C	uc001xux.2	-	13	1558	c.1387A>G	c.(1387-1389)AGT>GGT	p.S463G	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	463	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		TGGAGCTCACTGAGGTACCGC	0.537												
PTPN21	11099	broad.mit.edu	37	14	88946106	88946106	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:88946106T>C	uc001xwv.3	-	13	2000	c.1669A>G	c.(1669-1671)ATC>GTC	p.I557V	PTPN21_uc010twc.1_Missense_Mutation_p.I353V	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	557						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						GTCCGCATGATGTTGGGAGAC	0.701												
EML5	161436	broad.mit.edu	37	14	89091363	89091363	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:89091363A>G	uc001xxg.2	-	36	5035	c.4849T>C	c.(4849-4851)TAC>CAC	p.Y1617H	EML5_uc001xxf.2_Missense_Mutation_p.Y404H|EML5_uc001xxh.1_Missense_Mutation_p.Y748H	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	1609	WD 24.					cytoplasm|microtubule				ovary(3)	3						AGGGTGGTGTACATGGCAAAC	0.478												
FBLN5	10516	broad.mit.edu	37	14	92403440	92403440	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:92403440C>T	uc001xzx.3	-	4	703	c.230G>A	c.(229-231)CGA>CAA	p.R77Q	FBLN5_uc010aud.2_Missense_Mutation_p.R82Q|FBLN5_uc010aue.2_Missense_Mutation_p.R118Q	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	77	EGF-like 1; calcium-binding (Potential).				cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				gtagggCCCTCGATACACAGG	0.473												
TRIP11	9321	broad.mit.edu	37	14	92436177	92436177	+	Missense_Mutation	SNP	G	G	A	rs146953990	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:92436177G>A	uc001xzy.2	-	21	6568	c.5780C>T	c.(5779-5781)TCG>TTG	p.S1927L	TRIP11_uc010auf.1_Missense_Mutation_p.S1663L	NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	1927					transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		TACAGCTGCCGAGCGAGGAGC	0.453			T	PDGFRB	AML							
ATXN3	4287	broad.mit.edu	37	14	92560124	92560124	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:92560124T>C	uc001yac.3	-	4	355	c.286A>G	c.(286-288)AGT>GGT	p.S96G	ATXN3_uc010aug.2_Missense_Mutation_p.S81G|ATXN3_uc001yad.3_Missense_Mutation_p.S41G|ATXN3_uc010auh.2_Intron|ATXN3_uc001yae.3_Intron|ATXN3_uc010twl.1_Intron	NM_004993	NP_004984	P54252	ATX3_HUMAN	ataxin 3 reference isoform	96	Josephin.				cell death|nervous system development|nucleotide-excision repair|regulation of transcription, DNA-dependent|synaptic transmission|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleoplasm	cysteine-type peptidase activity|protein binding				0		all_cancers(154;0.0768)		COAD - Colon adenocarcinoma(157;0.224)		TACTCTGGACTGTTGAACAGG	0.338												
SLC24A4	123041	broad.mit.edu	37	14	92909143	92909143	+	Missense_Mutation	SNP	G	G	A	rs140536494		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:92909143G>A	uc001yak.2	+	6	538	c.514G>A	c.(514-516)GGA>AGA	p.G172R	SLC24A4_uc001yai.2_Missense_Mutation_p.G125R|SLC24A4_uc010twm.1_Missense_Mutation_p.G189R|SLC24A4_uc001yaj.2_Missense_Mutation_p.G172R|SLC24A4_uc010auj.2_Missense_Mutation_p.G80R|SLC24A4_uc010twn.1_5'Flank	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	189	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		TGGAGTGTGCGGACTGTTTGC	0.582												
GOLGA5	9950	broad.mit.edu	37	14	93282672	93282672	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:93282672T>C	uc001yaz.1	+	7	1579	c.1397T>C	c.(1396-1398)ATG>ACG	p.M466T		NM_005113	NP_005104	Q8TBA6	GOGA5_HUMAN	Golgi autoantigen, golgin subfamily a, 5	466	Cytoplasmic (Potential).|Potential.				Golgi organization	cis-Golgi network|integral to membrane	ATP binding|protein homodimerization activity|protein tyrosine kinase activity|Rab GTPase binding			ovary(2)|lung(1)	3		all_cancers(154;0.0934)		COAD - Colon adenocarcinoma(157;0.222)		GCCAGTAGCATGGAGCTGGAA	0.418			T	RET	papillary thyroid							
CHGA	1113	broad.mit.edu	37	14	93398722	93398722	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:93398722G>A	uc001ybc.3	+	7	1076	c.816G>A	c.(814-816)TCG>TCA	p.S272S	CHGA_uc010aum.2_RNA|CHGA_uc001ybd.3_Silent_p.S121S	NM_001275	NP_001266	P10645	CMGA_HUMAN	chromogranin A precursor	272					regulation of blood pressure	extracellular region|stored secretory granule				skin(2)	2		all_cancers(154;0.0843)		Epithelial(152;0.102)|COAD - Colon adenocarcinoma(157;0.208)|all cancers(159;0.224)		CAGGTCGGTCGGAGGCTCTGG	0.652												
MOAP1	64112	broad.mit.edu	37	14	93650412	93650412	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:93650412T>C	uc001ybj.2	-	3	546	c.176A>G	c.(175-177)GAT>GGT	p.D59G	C14orf109_uc001ybk.3_5'Flank|C14orf109_uc010auo.2_5'Flank	NM_022151	NP_071434	Q96BY2	MOAP1_HUMAN	modulator of apoptosis 1	59					activation of caspase activity|apoptotic nuclear change	cytoplasm	protein homodimerization activity			skin(2)|ovary(1)	3		all_cancers(154;0.00528)|Acute lymphoblastic leukemia(33;0.0497)|all_epithelial(191;0.125)|all_neural(303;0.13)		Epithelial(152;0.178)|all cancers(159;0.2)|COAD - Colon adenocarcinoma(157;0.204)		cctgttctcatccctcctgaa	0												
KIAA1409	57578	broad.mit.edu	37	14	94088327	94088327	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:94088327T>C	uc001ybv.1	+	28	4366	c.4283T>C	c.(4282-4284)TTA>TCA	p.L1428S	KIAA1409_uc001ybs.1_Missense_Mutation_p.L1406S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1583						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GAGGTTAGGTTAAACTGTATG	0.478												
FAM181A	90050	broad.mit.edu	37	14	94395058	94395058	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:94395058C>T	uc001ybz.1	+	3	920	c.613C>T	c.(613-615)CCA>TCA	p.P205S	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Missense_Mutation_p.P143S|FAM181A_uc001yca.1_Missense_Mutation_p.P143S	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	205											0						CTGGGAAGAGCCAAGGCCCAC	0.622												
DDX24	57062	broad.mit.edu	37	14	94545855	94545855	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:94545855T>C	uc001ycj.2	-	2	333	c.234A>G	c.(232-234)GCA>GCG	p.A78A	DDX24_uc010twq.1_Silent_p.A35A|DDX24_uc010twr.1_Intron|IFI27L1_uc001ycl.2_5'Flank|IFI27L1_uc001yck.2_5'Flank	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	78					RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		AAACAGCTTGTGCCTTTCTCT	0.443												
SERPINA12	145264	broad.mit.edu	37	14	94964479	94964479	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:94964479G>A	uc001ydj.2	-	3	1052	c.256C>T	c.(256-258)CTG>TTG	p.L86L		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	86					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		CCCAGGCACAGCATGGAGAAA	0.502												
SERPINA12	145264	broad.mit.edu	37	14	94964535	94964535	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:94964535T>C	uc001ydj.2	-	3	996	c.200A>G	c.(199-201)AAC>AGC	p.N67S		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	67					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		CCTGCCAGGGTTGTAAAAGGC	0.542												
BDKRB2	624	broad.mit.edu	37	14	96707338	96707338	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:96707338A>G	uc010avm.1	+	3	869	c.673A>G	c.(673-675)AAC>GAC	p.N225D	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Missense_Mutation_p.N198D|BDKRB2_uc001yfg.2_Missense_Mutation_p.N225D	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	225	Helical; Name=5; (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		AGTGTTCACCAACATGCTCCT	0.552												
ATG2B	55102	broad.mit.edu	37	14	96752298	96752298	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:96752298T>C	uc001yfi.2	-	42	6396	c.6031A>G	c.(6031-6033)ATT>GTT	p.I2011V		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	2011										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		GTTTCATAAATGGTCTGAGCC	0.562												
ATG2B	55102	broad.mit.edu	37	14	96811655	96811655	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:96811655A>G	uc001yfi.2	-	3	758	c.393T>C	c.(391-393)TGT>TGC	p.C131C		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	131										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		TCTGGCTAAGACATTCTTTTG	0.368												
EML1	2009	broad.mit.edu	37	14	100377888	100377888	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:100377888A>G	uc001ygs.2	+	13	1538	c.1469A>G	c.(1468-1470)AAC>AGC	p.N490S	EML1_uc010tww.1_Missense_Mutation_p.N478S|EML1_uc001ygq.2_Missense_Mutation_p.N509S|EML1_uc001ygr.2_Missense_Mutation_p.N509S	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	490	WD 5.					cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				TGGAGCGGAAACTATCAAAAA	0.403												
WDR25	79446	broad.mit.edu	37	14	100995488	100995488	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:100995488T>C	uc010avx.2	+	6	1449	c.1356T>C	c.(1354-1356)CTT>CTC	p.L452L	WDR25_uc001yhm.2_Silent_p.L444L|WDR25_uc001yhn.2_Silent_p.L452L|WDR25_uc010avy.2_RNA|WDR25_uc001yho.2_Silent_p.L195L	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	452	WD 5.										0		Melanoma(154;0.212)				ACCTGGCCCTTTTCTCCACTG	0.622												
DIO3	1735	broad.mit.edu	37	14	102028188	102028188	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:102028188C>T	uc010txq.1	+	1	501	c.277C>T	c.(277-279)CAT>TAT	p.H93Y	DIO3OS_uc001ykd.1_5'Flank|uc001yke.2_5'Flank|uc001ykf.2_5'Flank|uc001ykg.2_5'Flank|uc001ykh.3_5'Flank|MIR1247_hsa-mir-1247|MI0006382_5'Flank	NM_001362	NP_001353	P55073	IOD3_HUMAN	deiodinase, iodothyronine, type III	93	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	endosome membrane|integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|thyroxine 5-deiodinase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(303;0.185)				GGCGGTGTGGCATGGCCAGAA	0.652												
DYNC1H1	1778	broad.mit.edu	37	14	102442075	102442075	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:102442075G>A	uc001yks.2	+	2	447	c.283G>A	c.(283-285)GAA>AAA	p.E95K		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	95	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						AGGAGAAGAAGAAAAAGAATT	0.289												
DYNC1H1	1778	broad.mit.edu	37	14	102494083	102494083	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:102494083T>C	uc001yks.2	+	47	9340	c.9176T>C	c.(9175-9177)ATC>ACC	p.I3059T		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	3059	AAA 4 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						AGCCAGGTTATCCGCAACCTC	0.567												
WDR20	91833	broad.mit.edu	37	14	102675555	102675555	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:102675555T>C	uc001ykz.2	+	3	1097	c.1048T>C	c.(1048-1050)TCC>CCC	p.S350P	WDR20_uc001yky.1_Missense_Mutation_p.S93P|WDR20_uc001yla.2_Missense_Mutation_p.S226P|WDR20_uc001ylb.2_Missense_Mutation_p.S289P|WDR20_uc010txu.1_Missense_Mutation_p.S381P|WDR20_uc001ylc.2_Intron|WDR20_uc001yld.2_Missense_Mutation_p.S350P|WDR20_uc001yle.2_Missense_Mutation_p.S289P|WDR20_uc001ylf.2_Missense_Mutation_p.S362P	NM_144574	NP_653175	Q8TBZ3	WDR20_HUMAN	WD repeat domain 20 isoform 2	350	WD 4.										0						TAGTACACAGTCCAGGCTCTC	0.512											OREG0022939	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
RAGE	5891	broad.mit.edu	37	14	102695953	102695953	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:102695953T>C	uc001ylm.2	-	11	1249	c.1023A>G	c.(1021-1023)CGA>CGG	p.R341R	RAGE_uc010txv.1_Silent_p.R311R|RAGE_uc001yln.2_Silent_p.R159R|RAGE_uc001ylh.2_Intron|RAGE_uc001yli.2_RNA|RAGE_uc001yll.2_RNA|RAGE_uc001ylj.2_RNA|RAGE_uc001ylk.2_RNA	NM_014226	NP_055041	Q9UQ07	MOK_HUMAN	MAPK/MAK/MRK overlapping kinase	341					signal transduction	Golgi apparatus	ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						AGGCCGGTCCTCGTCTCTTGG	0.512												
RCOR1	23186	broad.mit.edu	37	14	103187412	103187412	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:103187412A>G	uc001ymb.2	+	9	1113	c.1113A>G	c.(1111-1113)CGA>CGG	p.R371R		NM_015156	NP_055971	Q9UKL0	RCOR1_HUMAN	REST corepressor 1	371	Interaction with KDM1A.				blood coagulation|histone H4 deacetylation|interspecies interaction between organisms	transcriptional repressor complex	protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription regulatory region DNA binding			ovary(1)	1						AACCATATCGACTTCCAGAGG	0.303												
CDC42BPB	9578	broad.mit.edu	37	14	103404718	103404718	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:103404718G>A	uc001ymi.1	-	35	5090	c.4858C>T	c.(4858-4860)CCG>TCG	p.P1620S		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	1620					actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		GCGGGGCCCGGCCTTTCCTCC	0.647												
CDC42BPB	9578	broad.mit.edu	37	14	103416191	103416191	+	Silent	SNP	G	G	A	rs148759838	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:103416191G>A	uc001ymi.1	-	26	3592	c.3360C>T	c.(3358-3360)GTC>GTT	p.V1120V	CDC42BPB_uc001ymj.1_Silent_p.V222V	NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	1120	PH.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		AGTCACAGACGACTGCATATG	0.552												
C14orf73	91828	broad.mit.edu	37	14	103566731	103566731	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:103566731C>T	uc001ymk.2	+	1	251	c.175C>T	c.(175-177)CGG>TGG	p.R59W		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	hypothetical protein LOC91828	59											0		Melanoma(154;0.155)	Epithelial(46;0.221)			GGCCTTCTCCCGGGCCAGCCA	0.657												
C14orf73	91828	broad.mit.edu	37	14	103574751	103574751	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:103574751T>C	uc001ymk.2	+	10	1949	c.1873T>C	c.(1873-1875)TTG>CTG	p.L625L		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	hypothetical protein LOC91828	625											0		Melanoma(154;0.155)	Epithelial(46;0.221)			GGCCACATGGTTGGACCAAGC	0.627												
ZFYVE21	79038	broad.mit.edu	37	14	104194125	104194125	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:104194125T>C	uc001yoc.2	+	3	266	c.232T>C	c.(232-234)TGC>CGC	p.C78R	ZFYVE21_uc001yod.2_Missense_Mutation_p.C78R	NM_024071	NP_076976	Q9BQ24	ZFY21_HUMAN	zinc finger, FYVE domain containing 21	78	FYVE-type.					cytoplasmic membrane-bounded vesicle|focal adhesion	metal ion binding				0		Melanoma(154;0.226)		Epithelial(152;0.245)		CGACAGGTGCTGCAGCCAGAA	0.677												
TDRD9	122402	broad.mit.edu	37	14	104457499	104457499	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:104457499A>G	uc001yom.3	+	9	1148	c.1118A>G	c.(1117-1119)AAC>AGC	p.N373S	TDRD9_uc001yon.3_Missense_Mutation_p.N111S	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	373					cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				TTTAACAGGAACAAGGCTTGG	0.323												
INF2	64423	broad.mit.edu	37	14	105169688	105169688	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:105169688C>T	uc001ypb.2	+	4	707	c.564C>T	c.(562-564)AGC>AGT	p.S188S	INF2_uc010tyi.1_Silent_p.S188S|INF2_uc001ypc.2_Silent_p.S188S|INF2_uc001yoy.3_Silent_p.S188S|INF2_uc001ypa.2_Silent_p.S188S	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	188	GBD/FH3.				actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		TCTCCGGCAGCGACAACGTGC	0.657												
AKT1	207	broad.mit.edu	37	14	105241992	105241992	+	Silent	SNP	G	G	A	rs17846825	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:105241992G>A	uc001ypk.2	-	5	986	c.432C>T	c.(430-432)CGC>CGT	p.R144R	INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_Silent_p.R144R|AKT1_uc010axa.2_Silent_p.R144R|AKT1_uc001ypm.2_Silent_p.R144R|AKT1_uc001ypn.2_Silent_p.R144R|AKT1_uc010tyk.1_Silent_p.R82R	NM_005163	NP_005154	P31749	AKT1_HUMAN	AKT1 kinase	144					activation of pro-apoptotic gene products|activation-induced cell death of T cells|endocrine pancreas development|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen biosynthetic process|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|mRNA metabolic process|negative regulation of fatty acid beta-oxidation|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|nitric oxide biosynthetic process|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of blood vessel endothelial cell migration|positive regulation of cell growth|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of establishment of protein localization in plasma membrane|positive regulation of fat cell differentiation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|positive regulation of nitric oxide biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein autophosphorylation|protein import into nucleus, translocation|regulation of neuron projection development|regulation of translation|response to fluid shear stress|response to heat|response to UV-A|T cell costimulation	cytosol|nucleoplasm|plasma membrane	enzyme binding|identical protein binding|nitric-oxide synthase regulator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein serine/threonine kinase activity			breast(86)|urinary_tract(12)|thyroid(10)|lung(7)|endometrium(5)|large_intestine(4)|skin(4)|prostate(3)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|NS(1)	134		all_cancers(154;3.77e-06)|all_lung(585;3.24e-07)|all_epithelial(191;3.45e-05)|all_neural(303;0.0459)|Melanoma(154;0.155)	all cancers(16;0.000486)|OV - Ovarian serous cystadenocarcinoma(23;0.00647)|Epithelial(46;0.0153)|GBM - Glioblastoma multiforme(11;0.116)	all cancers(159;0.0107)|OV - Ovarian serous cystadenocarcinoma(161;0.0132)|Epithelial(152;0.243)	Adenosine triphosphate(DB00171)|Arsenic trioxide(DB01169)	GCCTCACCACGCGGTGCTTGG	0.652		1	Mis		breast|colorectal|ovarian|NSCLC							
KIAA0284	283638	broad.mit.edu	37	14	105360905	105360905	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:105360905G>A	uc010axb.2	+	18	4621	c.4397G>A	c.(4396-4398)CGG>CAG	p.R1466Q	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Missense_Mutation_p.R1396Q|KIAA0284_uc001yps.2_Missense_Mutation_p.R1407Q|KIAA0284_uc001ypt.2_Missense_Mutation_p.R134Q	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	1501						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		GAACTGAGGCGGGTGCAGAAA	0.632												
AHNAK2	113146	broad.mit.edu	37	14	105408451	105408451	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:105408451T>A	uc010axc.1	-	7	13457	c.13337A>T	c.(13336-13338)GAG>GTG	p.E4446V	AHNAK2_uc001ypx.2_Missense_Mutation_p.E4346V	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4446						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CAGGTCCCCCTCCAGCCGCGT	0.597												
AHNAK2	113146	broad.mit.edu	37	14	105409290	105409290	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:105409290G>A	uc010axc.1	-	7	12618	c.12498C>T	c.(12496-12498)GAC>GAT	p.D4166D	AHNAK2_uc001ypx.2_Silent_p.D4066D	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4166						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGAGGCTCACGTCGGCTTTCG	0.607												
AHNAK2	113146	broad.mit.edu	37	14	105409652	105409652	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:105409652T>C	uc010axc.1	-	7	12256	c.12136A>G	c.(12136-12138)AGC>GGC	p.S4046G	AHNAK2_uc001ypx.2_Missense_Mutation_p.S3946G	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4046						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCTTTGAGGCTGGCTCCCTCG	0.632												
PACS2	23241	broad.mit.edu	37	14	105843171	105843171	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:105843171T>C	uc001yqt.2	+	9	1043	c.868T>C	c.(868-870)TAT>CAT	p.Y290H	PACS2_uc001yqs.2_Missense_Mutation_p.Y215H|PACS2_uc001yqv.2_Missense_Mutation_p.Y290H|PACS2_uc001yqu.2_Missense_Mutation_p.Y290H	NM_015197	NP_056012	Q86VP3	PACS2_HUMAN	phosphofurin acidic cluster sorting protein 2	290					apoptosis|interspecies interaction between organisms	endoplasmic reticulum lumen|mitochondrion				pancreas(1)	1		all_cancers(154;0.0351)|all_epithelial(191;0.153)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.0145)|Epithelial(46;0.036)	Epithelial(152;0.138)		GGACCTCCTGTATGACACCCT	0.672												
MTA1	9112	broad.mit.edu	37	14	105927257	105927257	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:105927257T>C	uc001yqx.2	+	10	1096	c.909T>C	c.(907-909)TAT>TAC	p.Y303Y	MTA1_uc001yqy.2_RNA|MTA1_uc001yqz.1_Silent_p.Y217Y|MTA1_uc001yra.1_Silent_p.Y217Y|MTA1_uc001yrb.2_Silent_p.Y64Y	NM_004689	NP_004680	Q13330	MTA1_HUMAN	metastasis associated protein	303	SANT.				signal transduction	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(154;0.0293)|all_epithelial(191;0.128)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00897)|Epithelial(46;0.026)	Epithelial(152;0.19)		TGGAAAAATATGGGAAGGATT	0.612												
OR4M2	390538	broad.mit.edu	37	15	22368607	22368607	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:22368607A>G	uc010tzu.1	+	1	32	c.32A>G	c.(31-33)GAA>GGA	p.E11G	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		AAGGTGACAGAATTTGTTCTC	0.333												
OR4M2	390538	broad.mit.edu	37	15	22368757	22368757	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:22368757T>A	uc010tzu.1	+	1	182	c.182T>A	c.(181-183)TTC>TAC	p.F61Y	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CCTATGTATTTCCTGTTGGCT	0.383												
CYFIP1	23191	broad.mit.edu	37	15	22955229	22955229	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:22955229C>T	uc001yus.2	+	15	1727	c.1623C>T	c.(1621-1623)AGC>AGT	p.S541S	CYFIP1_uc001yut.2_Silent_p.S541S|CYFIP1_uc010aya.1_Silent_p.S569S|CYFIP1_uc001yuu.2_5'Flank	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	541					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		ACCCCAAGAGCGGCTTCGACA	0.647												
NIPA1	123606	broad.mit.edu	37	15	23049143	23049143	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:23049143C>T	uc001yvc.2	-	5	701	c.676G>A	c.(676-678)GCC>ACC	p.A226T	NIPA1_uc001yvd.2_Missense_Mutation_p.A56T|NIPA1_uc001yve.2_Missense_Mutation_p.A151T	NM_144599	NP_653200	Q7RTP0	NIPA1_HUMAN	non-imprinted in Prader-Willi/Angelman syndrome	226	Helical; (Potential).				cell death	early endosome|integral to membrane|plasma membrane					0		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;4.18e-06)|Epithelial(43;3.97e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00165)		AGGCAGAGGGCTCTCTGACTG	0.602												
NIPA1	123606	broad.mit.edu	37	15	23049189	23049189	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:23049189C>T	uc001yvc.2	-	5	655	c.630G>A	c.(628-630)GGG>GGA	p.G210G	NIPA1_uc001yvd.2_Silent_p.G40G|NIPA1_uc001yve.2_Silent_p.G135G	NM_144599	NP_653200	Q7RTP0	NIPA1_HUMAN	non-imprinted in Prader-Willi/Angelman syndrome	210	Extracellular (Potential).				cell death	early endosome|integral to membrane|plasma membrane					0		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;4.18e-06)|Epithelial(43;3.97e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00165)		GGGCCGCCAGCCCGATGCCCT	0.617												
C15orf2	23742	broad.mit.edu	37	15	24921511	24921511	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:24921511C>T	uc001ywo.2	+	1	971	c.497C>T	c.(496-498)CCG>CTG	p.P166L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	166					cell differentiation|multicellular organismal development|spermatogenesis			p.P166P(1)		ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GATGAGGATCCGGTGCAGATC	0.632												
C15orf2	23742	broad.mit.edu	37	15	24922752	24922752	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:24922752A>G	uc001ywo.2	+	1	2212	c.1738A>G	c.(1738-1740)ACT>GCT	p.T580A		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	580					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TAATATGGATACTACTGCCCC	0.473												
UBE3A	7337	broad.mit.edu	37	15	25616547	25616547	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:25616547T>C	uc001zaq.2	-	4	783	c.783A>G	c.(781-783)GTA>GTG	p.V261V	uc001zae.2_Intron|UBE3A_uc001zar.2_Silent_p.V238V|UBE3A_uc001zas.2_Silent_p.V258V|UBE3A_uc001zat.2_Silent_p.V238V	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	261					brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		GTGACAAATATACAAGTGCAT	0.373												
ATP10A	57194	broad.mit.edu	37	15	25924821	25924821	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:25924821G>A	uc010ayu.2	-	21	4273	c.4167C>T	c.(4165-4167)AGC>AGT	p.S1389S		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	1389	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		GGGCCGGTGCGCTCAGCCCCT	0.682												
ATP10A	57194	broad.mit.edu	37	15	25940269	25940269	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:25940269G>C	uc010ayu.2	-	14	2891	c.2785C>G	c.(2785-2787)CAG>GAG	p.Q929E		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	929	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		CATAGGCACTGGTCTAGCAGG	0.597												
OCA2	4948	broad.mit.edu	37	15	28235761	28235761	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:28235761A>G	uc001zbh.3	-	10	1187	c.1077T>C	c.(1075-1077)GGT>GGC	p.G359G	OCA2_uc010ayv.2_Intron	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	359	Helical; (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		CTGCAAGGGAACCCAGCATGG	0.542									Oculocutaneous_Albinism			
HERC2	8924	broad.mit.edu	37	15	28446623	28446623	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:28446623T>C	uc001zbj.2	-	48	7801	c.7695A>G	c.(7693-7695)GTA>GTG	p.V2565V	HERC2_uc001zbk.1_Silent_p.V100V	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2565					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CTCTCACATATACAGCATAAT	0.313												
HERC2	8924	broad.mit.edu	37	15	28447538	28447538	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:28447538G>C	uc001zbj.2	-	46	7541	c.7435C>G	c.(7435-7437)CTG>GTG	p.L2479V	HERC2_uc001zbk.1_Missense_Mutation_p.L14V	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2479					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		AGAGACTTCAGGGCAAACTCG	0.567												
HERC2	8924	broad.mit.edu	37	15	28474412	28474412	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:28474412T>C	uc001zbj.2	-	34	5307	c.5201A>G	c.(5200-5202)AAG>AGG	p.K1734R		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1734					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		AGCGTACAGCTTGCCAAAGGT	0.383												
HERC2	8924	broad.mit.edu	37	15	28478854	28478854	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:28478854A>G	uc001zbj.2	-	28	4413	c.4307T>C	c.(4306-4308)GTC>GCC	p.V1436A		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1436					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CAAGCGACCGACCTCTTCCAC	0.453												
MTMR15	22909	broad.mit.edu	37	15	31197803	31197803	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:31197803A>G	uc001zff.2	+	2	1228	c.937A>G	c.(937-939)AAA>GAA	p.K313E	MTMR15_uc001zfc.3_Missense_Mutation_p.K313E|MTMR15_uc010azw.2_Missense_Mutation_p.K313E|MTMR15_uc001zfd.3_Missense_Mutation_p.K313E|MTMR15_uc001zfe.2_5'UTR	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	313					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		TTCAGAAGCTAAAATACAGCT	0.413								Direct_reversal_of_damage|Editing_and_processing_nucleases				
MTMR10	54893	broad.mit.edu	37	15	31247018	31247018	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:31247018A>G	uc001zfh.1	-	10	1112	c.1014T>C	c.(1012-1014)AAT>AAC	p.N338N	MTMR10_uc010azx.1_Silent_p.N90N|MTMR10_uc001zfi.1_Silent_p.N90N|MTMR10_uc001zfj.2_Silent_p.N256N|MTMR10_uc001zfk.2_Silent_p.N90N	NM_017762	NP_060232	Q9NXD2	MTMRA_HUMAN	myotubularin related protein 10	338	Myotubularin phosphatase.						phosphatase activity			ovary(1)	1		all_lung(180;2.81e-11)		all cancers(64;7.26e-15)|Epithelial(43;7.2e-11)|GBM - Glioblastoma multiforme(186;0.000158)|BRCA - Breast invasive adenocarcinoma(123;0.00426)|Lung(196;0.174)		CTTCTTGAATATTAGGCAAGG	0.313												
RYR3	6263	broad.mit.edu	37	15	33855130	33855130	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:33855130G>A	uc001zhi.2	+	11	1135	c.1065G>A	c.(1063-1065)GTG>GTA	p.V355V	RYR3_uc010bar.2_Silent_p.V355V	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	355	Cytoplasmic (By similarity).|MIR 5.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TCTGCTTTGTGCAGCATATAG	0.458												
RYR3	6263	broad.mit.edu	37	15	34150099	34150099	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:34150099G>A	uc001zhi.2	+	99	14196	c.14126G>A	c.(14125-14127)TGC>TAC	p.C4709Y	RYR3_uc010bar.2_Missense_Mutation_p.C4704Y	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	4709				C -> R (in Ref. 6; CAA52326).	cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GATATGAAGTGCGACGACATG	0.592												
LPCAT4	254531	broad.mit.edu	37	15	34657245	34657245	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:34657245A>G	uc001zig.2	-	3	536	c.442T>C	c.(442-444)TCC>CCC	p.S148P	LPCAT4_uc010bav.1_Missense_Mutation_p.S148P	NM_153613	NP_705841	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	148					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding				0						TCAGCTCGGGACACAACTTTG	0.552												
AQR	9716	broad.mit.edu	37	15	35189126	35189126	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:35189126C>T	uc001ziv.2	-	22	2613	c.2432G>A	c.(2431-2433)CGT>CAT	p.R811H		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	811						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		CATTCCAGCACGGATGGCTTC	0.274												
AQR	9716	broad.mit.edu	37	15	35207329	35207329	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:35207329T>C	uc001ziv.2	-	16	1575	c.1394A>G	c.(1393-1395)TAC>TGC	p.Y465C		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	465						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		CCTTAGCAGGTAGTCATGAAG	0.328												
ZNF770	54989	broad.mit.edu	37	15	35275452	35275452	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:35275452T>C	uc001ziw.2	-	3	495	c.184A>G	c.(184-186)AAA>GAA	p.K62E		NM_014106	NP_054825	Q6IQ21	ZN770_HUMAN	zinc finger protein 770	62	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(122;4.59e-10)|all_lung(180;8.78e-09)		all cancers(64;1.97e-18)|GBM - Glioblastoma multiforme(113;2.11e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0643)		CTAAAGGTTTTATGACACACA	0.348												
MEIS2	4212	broad.mit.edu	37	15	37385877	37385877	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:37385877T>C	uc001zjr.2	-	6	1581	c.544A>G	c.(544-546)AAA>GAA	p.K182E	MEIS2_uc001zjl.2_Missense_Mutation_p.K169E|MEIS2_uc010ucj.1_Missense_Mutation_p.K169E|MEIS2_uc001zjm.2_Missense_Mutation_p.K94E|MEIS2_uc001zjn.2_Missense_Mutation_p.K36E|MEIS2_uc001zjo.2_Missense_Mutation_p.K182E|MEIS2_uc001zjp.2_Missense_Mutation_p.K182E|MEIS2_uc001zjs.2_Missense_Mutation_p.K182E|MEIS2_uc001zju.2_Missense_Mutation_p.K169E|MEIS2_uc001zjt.2_Missense_Mutation_p.K182E	NM_170675	NP_733775	O14770	MEIS2_HUMAN	Meis homeobox 2 isoform c	182					negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)	2		all_epithelial(112;9.77e-14)|Lung NSC(122;1.42e-09)|all_lung(180;2.2e-08)|Ovarian(310;0.134)|Melanoma(134;0.155)		all cancers(64;9.33e-21)|GBM - Glioblastoma multiforme(113;1.71e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0288)		ATGGGCATTTTCCCCTTCAAA	0.478												
RASGRP1	10125	broad.mit.edu	37	15	38786879	38786879	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:38786879C>T	uc001zke.3	-	16	2141	c.1963G>A	c.(1963-1965)GTG>ATG	p.V655M	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_Intron|RASGRP1_uc010bbg.2_Intron|RASGRP1_uc001zkd.3_Missense_Mutation_p.V620M	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	655					cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		TGTGAGGACACTCCCATCAGC	0.537												
C15orf53	400359	broad.mit.edu	37	15	38988843	38988843	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:38988843T>C	uc001zkf.1	+	1	45	c.35T>C	c.(34-36)ATT>ACT	p.I12T		NM_207444	NP_997327	Q8NAA6	CO053_HUMAN	hypothetical protein LOC400359	12											0		all_cancers(109;1.75e-13)|all_epithelial(112;1.02e-11)|Lung NSC(122;1.9e-09)|all_lung(180;4.04e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;8.39e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0321)		GACCTGGGCATTTCCCTCTCT	0.547												
FSIP1	161835	broad.mit.edu	37	15	39893115	39893115	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:39893115G>C	uc001zki.2	-	12	1930	c.1712C>G	c.(1711-1713)ACT>AGT	p.T571S		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	571										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		TGCATCTTTAGTCTCCTGCTC	0.313												
FSIP1	161835	broad.mit.edu	37	15	40034063	40034063	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:40034063A>G	uc001zki.2	-	6	816	c.598T>C	c.(598-600)TTT>CTT	p.F200L		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	200										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		TGAGTATGAAACACTGAGGAA	0.328												
EIF2AK4	440275	broad.mit.edu	37	15	40260054	40260054	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:40260054A>G	uc001zkm.1	+	9	1577	c.1527A>G	c.(1525-1527)CCA>CCG	p.P509P	EIF2AK4_uc001zkl.2_Silent_p.P509P|EIF2AK4_uc010bbj.1_Silent_p.P238P	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	509	Protein kinase 1.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		GTGACTTACCAGCTGACTTTC	0.463												
CASC5	57082	broad.mit.edu	37	15	40951543	40951543	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:40951543A>G	uc010bbs.1	+	26	6959	c.6798A>G	c.(6796-6798)AGA>AGG	p.R2266R	CASC5_uc010bbt.1_Silent_p.R2240R	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	2266	Necessary for kinetochore localization and for interaction with NSL1 and DSN1.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		ACAGATTGAGACTTTTATTCT	0.279												
INO80	54617	broad.mit.edu	37	15	41276438	41276438	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:41276438G>A	uc001zni.2	-	33	4247	c.4034C>T	c.(4033-4035)TCC>TTC	p.S1345F	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	1345	Assembles INO80 complex module consisting of conserved components INO80B, INO80C, ACTR5, RVBL1, RVBL2.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						GCTAATGAAGGAGTCATCTCC	0.517												
INO80	54617	broad.mit.edu	37	15	41379768	41379768	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:41379768T>C	uc001zni.2	-	6	863	c.650A>G	c.(649-651)AAA>AGA	p.K217R	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	217	Assembles INO80 complex module with putative regulatory components INO80E, INO80F, UCHL5, NFRKB, MCRS1 and IN80D.|Assembles INO80 complex module consisting of conserved components ACTR8, ACTL6A and YY1.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						ACCTTTAAGTTTCTTTTCCTC	0.413												
TYRO3	7301	broad.mit.edu	37	15	41864656	41864656	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:41864656G>A	uc001zof.1	+	15	1993	c.1769G>A	c.(1768-1770)AGC>AAC	p.S590N		NM_006293	NP_006284	Q06418	TYRO3_HUMAN	TYRO3 protein tyrosine kinase precursor	590	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			ovary(3)|lung(2)|central_nervous_system(1)	6		all_cancers(109;7.33e-15)|all_epithelial(112;2.8e-12)|Lung NSC(122;3.48e-08)|all_lung(180;1.71e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.31e-18)|GBM - Glioblastoma multiforme(113;9.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.117)		AGCCTCCGGAGCAGGGCTAAA	0.607												
TYRO3	7301	broad.mit.edu	37	15	41870425	41870425	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:41870425A>G	uc001zof.1	+	19	2848	c.2624A>G	c.(2623-2625)CAG>CGG	p.Q875R		NM_006293	NP_006284	Q06418	TYRO3_HUMAN	TYRO3 protein tyrosine kinase precursor	875	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			ovary(3)|lung(2)|central_nervous_system(1)	6		all_cancers(109;7.33e-15)|all_epithelial(112;2.8e-12)|Lung NSC(122;3.48e-08)|all_lung(180;1.71e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.31e-18)|GBM - Glioblastoma multiforme(113;9.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.117)		AATGAGACACAGAGGCTTTTG	0.627												
MGA	23269	broad.mit.edu	37	15	41961222	41961222	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:41961222A>G	uc001zog.1	+	2	221	c.130A>G	c.(130-132)AAT>GAT	p.N44D	MGA_uc010ucy.1_Missense_Mutation_p.N44D|MGA_uc010ucz.1_Missense_Mutation_p.N44D	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	44						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		TTTGGTTACTAATCAGGATGC	0.438												
SPTBN5	51332	broad.mit.edu	37	15	42171952	42171952	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:42171952C>T	uc001zos.2	-	15	3150	c.2817G>A	c.(2815-2817)CAG>CAA	p.Q939Q		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	974	Spectrin 7.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GTTCCTCCTGCTGTCGTTGGA	0.617												
TMEM87A	25963	broad.mit.edu	37	15	42512335	42512335	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:42512335T>C	uc010udd.1	-	16	1563	c.1404_splice	c.e16-1	p.R468_splice		NM_015497	NP_056312	Q8NBN3	TM87A_HUMAN	transmembrane protein 87A isoform 1							integral to membrane				ovary(1)	1		all_cancers(109;4.28e-16)|all_epithelial(112;1.04e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;1.03e-06)		AAGGCAAACCTAACAGAACCA	0.333												
CAPN3	825	broad.mit.edu	37	15	42652008	42652008	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:42652008C>T	uc001zpn.1	+	1	311	c.5C>T	c.(4-6)CCG>CTG	p.P2L	CAPN3_uc001zpk.1_Intron|CAPN3_uc001zpl.1_Intron|CAPN3_uc010udf.1_Intron|CAPN3_uc010udg.1_Intron|CAPN3_uc001zpo.1_Missense_Mutation_p.P2L|CAPN3_uc001zpp.1_Missense_Mutation_p.P2L	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	2					muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		CTTGCCATGCCGACCGTCATT	0.537												
CAPN3	825	broad.mit.edu	37	15	42693866	42693866	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:42693866G>A	uc001zpn.1	+	11	1688	c.1382G>A	c.(1381-1383)CGT>CAT	p.R461H	CAPN3_uc001zpk.1_Missense_Mutation_p.R234H|CAPN3_uc001zpl.1_Missense_Mutation_p.R374H|CAPN3_uc010udf.1_Missense_Mutation_p.R374H|CAPN3_uc010udg.1_Missense_Mutation_p.R326H|CAPN3_uc001zpo.1_Missense_Mutation_p.R461H|CAPN3_uc001zpp.1_Missense_Mutation_p.R413H|CAPN3_uc001zpq.1_5'Flank	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	461	Domain III.				muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		CCTCAGTACCGTCTGAAGCTC	0.582												
UBR1	197131	broad.mit.edu	37	15	43244513	43244513	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:43244513C>T	uc001zqq.2	-	45	5035	c.4969G>A	c.(4969-4971)GCA>ACA	p.A1657T		NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	1657					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		CAGTGAAGTGCGTGAAAAATG	0.473												
UBR1	197131	broad.mit.edu	37	15	43258414	43258414	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:43258414G>A	uc001zqq.2	-	41	4594	c.4528C>T	c.(4528-4530)CGC>TGC	p.R1510C		NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	1510					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		GCAGCACAGCGAAGATAAGGG	0.443												
TMEM62	80021	broad.mit.edu	37	15	43441276	43441276	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:43441276A>G	uc001zqr.2	+	7	1072	c.793A>G	c.(793-795)ATG>GTG	p.M265V	TMEM62_uc010bda.2_Missense_Mutation_p.M135V	NM_024956	NP_079232	Q0P6H9	TMM62_HUMAN	transmembrane protein 62	265						integral to membrane				ovary(1)|breast(1)	2		all_cancers(109;1.16e-10)|all_epithelial(112;2.01e-09)|Lung NSC(122;8.91e-07)|all_lung(180;8.8e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;4.23e-07)		TGGTGGACTGATGCCTGTTTT	0.433												
EPB42	2038	broad.mit.edu	37	15	43508513	43508513	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:43508513C>T	uc001zra.3	-	2	449	c.149G>A	c.(148-150)CGT>CAT	p.R50H	EPB42_uc010bde.2_Translation_Start_Site|EPB42_uc001zrb.3_Missense_Mutation_p.R80H|EPB42_uc010udm.1_Missense_Mutation_p.R50H	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	50					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		CAGAAATGCACGGACTGGAGC	0.597												
TGM5	9333	broad.mit.edu	37	15	43531051	43531051	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:43531051G>A	uc001zrd.1	-	9	1317	c.1309C>T	c.(1309-1311)CGG>TGG	p.R437W	TGM5_uc001zrc.1_Missense_Mutation_p.R94W|TGM5_uc001zre.1_Missense_Mutation_p.R355W	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	437					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	ATGTCATCCCGCTCGTCACTC	0.542												
TGM7	116179	broad.mit.edu	37	15	43568758	43568758	+	Silent	SNP	C	C	T	rs143065351		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:43568758C>T	uc001zrf.1	-	13	2033	c.2028G>A	c.(2026-2028)CCG>CCA	p.P676P		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	676					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	CAGCTTTGGTCGGGTAGAGGT	0.572												
MAP1A	4130	broad.mit.edu	37	15	43817423	43817423	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:43817423C>T	uc001zrt.2	+	4	4219	c.3752C>T	c.(3751-3753)GCT>GTT	p.A1251V		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1251						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CACCACACAGCTCCCATGTCT	0.547												
MAP1A	4130	broad.mit.edu	37	15	43819209	43819209	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:43819209G>A	uc001zrt.2	+	4	6005	c.5538G>A	c.(5536-5538)GTG>GTA	p.V1846V		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1846						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CACCCTGGGTGCCCAAGGACA	0.622												
MAP1A	4130	broad.mit.edu	37	15	43819857	43819857	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:43819857T>C	uc001zrt.2	+	4	6653	c.6186T>C	c.(6184-6186)GTT>GTC	p.V2062V		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	2062						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CACCTGCAGTTCCCCCCCGTG	0.612												
ELL3	80237	broad.mit.edu	37	15	44065395	44065395	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:44065395A>G	uc001zsw.1	-	11	1516	c.1113T>C	c.(1111-1113)CGT>CGC	p.R371R	ELL3_uc001zsv.1_Silent_p.R325R|ELL3_uc001zsx.1_Silent_p.R255R	NM_025165	NP_079441	Q9HB65	ELL3_HUMAN	elongation factor RNA polymerase II-like 3	371					positive regulation of transcription elongation, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|spermatogenesis|transcription elongation from RNA polymerase II promoter	transcription elongation factor complex				ovary(1)	1		all_cancers(109;7.57e-15)|all_epithelial(112;3.51e-12)|Lung NSC(122;4.72e-08)|all_lung(180;4.9e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;7.81e-07)		ACTCACAGCGACGCTTTTCTT	0.428												
WDR76	79968	broad.mit.edu	37	15	44149345	44149345	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:44149345A>G	uc001zti.1	+	10	1416	c.1393A>G	c.(1393-1395)ATC>GTC	p.I465V		NM_024908	NP_079184	Q9H967	WDR76_HUMAN	WD repeat domain 76	465	WD 4.										0		all_cancers(109;3.26e-11)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.61e-06)|all_lung(180;1.5e-05)|Melanoma(134;0.0417)		all cancers(107;3.78e-21)|GBM - Glioblastoma multiforme(94;5.04e-07)		ACAGTATTTTATCACTGCCGG	0.363												
SPG11	80208	broad.mit.edu	37	15	44913997	44913997	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:44913997T>C	uc001ztx.2	-	14	2611	c.2580A>G	c.(2578-2580)CTA>CTG	p.L860L	SPG11_uc010ueh.1_Silent_p.L860L|SPG11_uc010uei.1_Silent_p.L860L|SPG11_uc001ztz.1_5'Flank	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	860	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		ATTCTTGTGTTAGTTGATCCC	0.383												
SPG11	80208	broad.mit.edu	37	15	44914121	44914121	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:44914121T>A	uc001ztx.2	-	14	2487	c.2456A>T	c.(2455-2457)AAG>ATG	p.K819M	SPG11_uc010ueh.1_Missense_Mutation_p.K819M|SPG11_uc010uei.1_Missense_Mutation_p.K819M|SPG11_uc001ztz.1_5'Flank	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	819	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		ATCTTGTTCCTTTATCCAGTA	0.289												
B2M	567	broad.mit.edu	37	15	45007846	45007846	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:45007846A>G	uc001zuc.2	+	2	353	c.293A>G	c.(292-294)TAT>TGT	p.Y98C	B2M_uc010uek.1_Missense_Mutation_p.Y98C|B2M_uc010bdx.1_Missense_Mutation_p.M71V	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	98	Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding			ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		AAAGATGAGTATGCCTGCCGT	0.413												
TRIM69	140691	broad.mit.edu	37	15	45050837	45050837	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:45050837C>A	uc001zuf.2	+	5	1493	c.598C>A	c.(598-600)CAG>AAG	p.Q200K	TRIM69_uc001zui.1_5'UTR|TRIM69_uc010bdy.1_5'UTR|TRIM69_uc001zug.1_Missense_Mutation_p.Q200K|TRIM69_uc001zuh.1_Missense_Mutation_p.Q41K	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	200	Potential.				apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		GCTACATCTGCAGCAACATGT	0.483												
SLC28A2	9153	broad.mit.edu	37	15	45567685	45567685	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:45567685T>C	uc001zva.2	+	18	2016	c.1951T>C	c.(1951-1953)TTC>CTC	p.F651L		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	651					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		CTGCTGTGGATTCTACAACAA	0.428												
GATM	2628	broad.mit.edu	37	15	45658660	45658660	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:45658660T>C	uc001zvc.2	-	5	1051	c.722A>G	c.(721-723)CAG>CGG	p.Q241R	GATM_uc001zvb.2_Missense_Mutation_p.Q112R|GATM_uc010uev.1_Missense_Mutation_p.Q294R	NM_001482	NP_001473	P50440	GATM_HUMAN	L-arginine:glycine amidinotransferase precursor	241					creatine biosynthetic process	mitochondrial inner membrane|mitochondrial intermembrane space	glycine amidinotransferase activity|protein binding				0		all_cancers(109;1.25e-09)|all_epithelial(112;5.56e-08)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.87e-16)|GBM - Glioblastoma multiforme(94;1.97e-06)	Creatine(DB00148)|Glycine(DB00145)|L-Ornithine(DB00129)	AAATTTTCCCTGAGCAGCCAA	0.418												
SPATA5L1	79029	broad.mit.edu	37	15	45702638	45702638	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:45702638G>A	uc001zve.2	+	3	1453	c.1344G>A	c.(1342-1344)TCG>TCA	p.S448S	SPATA5L1_uc001zvf.2_RNA	NM_024063	NP_076968	Q9BVQ7	SPA5L_HUMAN	spermatogenesis associated 5-like 1	448						cytoplasm	ATP binding|nucleoside-triphosphatase activity			ovary(3)|skin(1)	4		Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;7.31e-17)|GBM - Glioblastoma multiforme(94;6.28e-07)		AGCCCTCATCGTTTCGAAGCG	0.383												
SEMA6D	80031	broad.mit.edu	37	15	48056245	48056245	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:48056245T>C	uc010bek.2	+	10	1306	c.946T>C	c.(946-948)TTT>CTT	p.F316L	SEMA6D_uc001zvw.2_Missense_Mutation_p.F316L|SEMA6D_uc001zvx.1_Missense_Mutation_p.F316L|SEMA6D_uc001zvy.2_Missense_Mutation_p.F316L|SEMA6D_uc001zvz.2_Missense_Mutation_p.F316L|SEMA6D_uc001zwa.2_Missense_Mutation_p.F316L|SEMA6D_uc001zwb.2_Missense_Mutation_p.F316L|SEMA6D_uc001zwc.2_Missense_Mutation_p.F316L	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	316	Sema.|Extracellular (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		GGTCGGGGTGTTTACCACGCA	0.483												
SLC12A1	6557	broad.mit.edu	37	15	48580325	48580325	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:48580325A>G	uc001zwn.3	+	22	2931	c.2715A>G	c.(2713-2715)AAA>AAG	p.K905K	SLC12A1_uc001zwq.3_Silent_p.K676K|SLC12A1_uc001zwr.3_Silent_p.K632K	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	905	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	TTAAAAAGAAACAAGAAAAAG	0.383												
FBN1	2200	broad.mit.edu	37	15	48707828	48707828	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:48707828A>G	uc001zwx.1	-	64	8284	c.7956T>C	c.(7954-7956)TGT>TGC	p.C2652C	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2652	EGF-like 47; calcium-binding.		C -> G (in MFS).		heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GCGCAGAGCCACATTCATTGA	0.572												
CEP152	22995	broad.mit.edu	37	15	49048376	49048376	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:49048376A>G	uc001zwy.2	-	20	3103	c.3069T>C	c.(3067-3069)AGT>AGC	p.S1023S	CEP152_uc001zwz.2_Silent_p.S1023S|CEP152_uc001zxa.1_Silent_p.S930S	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	1023					centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		ATTCTCTACGACTCTGGTCTA	0.408												
CEP152	22995	broad.mit.edu	37	15	49076171	49076171	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:49076171G>A	uc001zwy.2	-	10	1354	c.1320C>T	c.(1318-1320)TCC>TCT	p.S440S	CEP152_uc001zwz.2_Silent_p.S440S|CEP152_uc001zxa.1_Silent_p.S347S	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	440	Potential.				centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		GACACCTACCGGACTGCAACA	0.433												
C15orf33	196951	broad.mit.edu	37	15	49833967	49833967	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:49833967T>C	uc001zxl.2	-	10	1078	c.784A>G	c.(784-786)ACG>GCG	p.T262A	C15orf33_uc001zxm.2_Missense_Mutation_p.T228A	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	262										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		TCATGGAACGTTGCATATATG	0.279												
TRPM7	54822	broad.mit.edu	37	15	50867177	50867177	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:50867177A>T	uc001zyt.3	-	34	5155	c.4891T>A	c.(4891-4893)TGT>AGT	p.C1631S	TRPM7_uc001zyr.2_Missense_Mutation_p.C68S	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	1631	Cytoplasmic (Potential).|Alpha-type protein kinase.				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		GACCAGGTACACTGTACTTTG	0.398												
TRPM7	54822	broad.mit.edu	37	15	50897284	50897284	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:50897284A>G	uc001zyt.3	-	21	3031	c.2767T>C	c.(2767-2769)TAC>CAC	p.Y923H	TRPM7_uc010bew.1_Missense_Mutation_p.Y923H|TRPM7_uc001zyu.2_Missense_Mutation_p.Y481H	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	923	Helical; (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		ATGTTGAAGTAATCACTAAAC	0.303												
SPPL2A	84888	broad.mit.edu	37	15	51028334	51028334	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:51028334A>G	uc001zyv.2	-	8	1076	c.896T>C	c.(895-897)GTA>GCA	p.V299A		NM_032802	NP_116191	Q8TCT8	PSL2_HUMAN	signal peptide peptidase-like 2A	299	Helical; (Potential).					integral to membrane	aspartic-type endopeptidase activity				0				all cancers(107;0.000712)|GBM - Glioblastoma multiforme(94;0.00314)		AACAACAGCTACTGCTATGCA	0.363												
TNFAIP8L3	388121	broad.mit.edu	37	15	51350348	51350348	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:51350348G>A	uc001zyy.2	-	3	709	c.609C>T	c.(607-609)ACC>ACT	p.T203T		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	203											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		TGGTCATGGCGGTCTGGTTCA	0.507												
CYP19A1	1588	broad.mit.edu	37	15	51503171	51503171	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:51503171G>A	uc001zyz.3	-	11	1597	c.1346C>T	c.(1345-1347)GCC>GTC	p.A449V	CYP19A1_uc001zza.3_Missense_Mutation_p.A449V	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	449					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	AACGAGGATGGCTTTCATCAT	0.473												
DMXL2	23312	broad.mit.edu	37	15	51827880	51827880	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:51827880A>G	uc002abf.2	-	13	2641	c.2416T>C	c.(2416-2418)TTG>CTG	p.L806L	DMXL2_uc010ufy.1_Silent_p.L806L|DMXL2_uc010bfa.2_Silent_p.L806L	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	806						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		GGGTCTGACAATTCATCTAAT	0.343												
MYO5A	4644	broad.mit.edu	37	15	52662616	52662616	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:52662616T>C	uc002aby.2	-	22	3062	c.2818_splice	c.e22-1	p.N940_splice	MYO5A_uc002abx.3_Splice_Site_p.N940_splice|MYO5A_uc010uge.1_Splice_Site_p.N809_splice	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1						actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		GTCTTTGTTCTTTAAACATAC	0.308												
MYO5A	4644	broad.mit.edu	37	15	52668673	52668673	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:52668673T>C	uc002aby.2	-	19	2535	c.2291A>G	c.(2290-2292)GAC>GGC	p.D764G	MYO5A_uc002abx.3_Missense_Mutation_p.D764G|MYO5A_uc010uge.1_Missense_Mutation_p.D633G	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	764	Myosin head-like.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		TCTCAGTTTGTCAGCTCTCAA	0.478												
KIAA1370	56204	broad.mit.edu	37	15	52902434	52902434	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:52902434G>A	uc002acg.3	-	6	830	c.677C>T	c.(676-678)ACG>ATG	p.T226M	KIAA1370_uc002ach.3_RNA|KIAA1370_uc010bfg.1_Missense_Mutation_p.T138M|KIAA1370_uc010ugf.1_Missense_Mutation_p.T233M	NM_019600	NP_062546	Q32MH5	K1370_HUMAN	hypothetical protein LOC56204	226											0				all cancers(107;0.0803)		AATACTGCACGTCAAAACTGG	0.378												
ONECUT1	3175	broad.mit.edu	37	15	53049965	53049965	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:53049965G>A	uc002aci.1	-	2	1313	c.1185C>T	c.(1183-1185)GTC>GTT	p.V395V		NM_004498	NP_004489	Q9UBC0	HNF6_HUMAN	one cut homeobox 1	395	Homeobox.				endocrine pancreas development	nucleus	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding				0				all cancers(107;0.0708)		TTCGACGCTGGACATCTGTGA	0.458												
ONECUT1	3175	broad.mit.edu	37	15	53081197	53081197	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:53081197T>G	uc002aci.1	-	1	1013	c.885A>C	c.(883-885)AAA>AAC	p.K295N		NM_004498	NP_004489	Q9UBC0	HNF6_HUMAN	one cut homeobox 1	295	CUT.				endocrine pancreas development	nucleus	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding				0				all cancers(107;0.0708)		GCGCCACCTCTTTGGTATTGA	0.627												
UNC13C	440279	broad.mit.edu	37	15	54793148	54793148	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:54793148T>A	uc002ack.2	+	20	5273	c.5273T>A	c.(5272-5274)TTA>TAA	p.L1758*		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1758	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CCTGAAGCATTATCTCACTTA	0.378												
UNC13C	440279	broad.mit.edu	37	15	54803967	54803967	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:54803967A>G	uc002ack.2	+	22	5396	c.5396A>G	c.(5395-5397)AAC>AGC	p.N1799S		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1799					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATCTTGATGAACAATATTCAA	0.323												
PIGB	9488	broad.mit.edu	37	15	55632864	55632864	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:55632864A>G	uc002act.2	+	8	1217	c.901A>G	c.(901-903)ACA>GCA	p.T301A	PIGB_uc010ugg.1_Missense_Mutation_p.T106A	NM_004855	NP_004846	Q92521	PIGB_HUMAN	phosphatidylinositol glycan, class B	301					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	integral to membrane|intrinsic to endoplasmic reticulum membrane	glycolipid mannosyltransferase activity				0				all cancers(107;0.0255)		GAACTGGGGAACATTTTATGG	0.398												
CCPG1	9236	broad.mit.edu	37	15	55652756	55652756	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:55652756A>G	uc002acv.1	-	8	1380	c.1215T>C	c.(1213-1215)GGT>GGC	p.G405G	CCPG1_uc002acy.2_Silent_p.G405G|CCPG1_uc002acu.1_Silent_p.G261G|CCPG1_uc002acw.1_Silent_p.G130G|CCPG1_uc002acx.2_Intron|CCPG1_uc010bfk.1_Silent_p.G405G|CCPG1_uc002acz.1_Silent_p.G405G	NM_020739	NP_065790	Q9ULG6	CCPG1_HUMAN	cell cycle progression 1 isoform 2	405	Potential.|Lumenal (Potential).				cell cycle	integral to membrane				ovary(1)	1				all cancers(107;0.0354)		GTAACTGACTACCACTTAACT	0.438												
PYGO1	26108	broad.mit.edu	37	15	55839009	55839009	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:55839009T>C	uc010bfl.1	-	3	528	c.472A>G	c.(472-474)AAT>GAT	p.N158D	PYGO1_uc002adf.1_Missense_Mutation_p.N158D	NM_015617	NP_056432	Q9Y3Y4	PYGO1_HUMAN	pygopus homolog 1	158	Asn-rich.				Wnt receptor signaling pathway	nucleus	zinc ion binding			ovary(1)|skin(1)	2				all cancers(107;0.0131)|GBM - Glioblastoma multiforme(80;0.18)		TAAGATGGATTACCGAAACTT	0.393												
PRTG	283659	broad.mit.edu	37	15	55972312	55972312	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:55972312G>A	uc002adg.2	-	6	961	c.913C>T	c.(913-915)CGG>TGG	p.R305W		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	305	Ig-like 3.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		GTAGTGGCCCGACAAACATAT	0.408												
NEDD4	4734	broad.mit.edu	37	15	56140717	56140717	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:56140717A>G	uc002adj.2	-	12	3040	c.2740_splice	c.e12+1	p.N914_splice	NEDD4_uc002adl.2_Splice_Site_p.N495_splice|NEDD4_uc002adi.2_Splice_Site_p.N842_splice|NEDD4_uc010ugj.1_Splice_Site_p.N898_splice|NEDD4_uc010bfm.2_Splice_Site_p.N897_splice|NEDD4_uc002adk.2_Splice_Site	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally						development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		CACTGCACATACTGTGATTTA	0.303												
NEDD4	4734	broad.mit.edu	37	15	56207860	56207860	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:56207860A>G	uc002adj.2	-	1	1470	c.1170T>C	c.(1168-1170)TGT>TGC	p.C390C	NEDD4_uc002adl.2_Intron|NEDD4_uc002adi.2_Silent_p.C390C|NEDD4_uc010ugj.1_Silent_p.C390C|NEDD4_uc010bfm.2_Silent_p.C390C|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	390					development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		TTGTTGTTTCACAGTCTAATG	0.373												
ZNF280D	54816	broad.mit.edu	37	15	56958612	56958612	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:56958612A>G	uc002adu.2	-	16	2192	c.1975T>C	c.(1975-1977)TAT>CAT	p.Y659H	ZNF280D_uc002adv.2_Missense_Mutation_p.Y646H|ZNF280D_uc010bfq.2_Missense_Mutation_p.Y659H|ZNF280D_uc002adw.1_Missense_Mutation_p.Y687H|ZNF280D_uc010bfr.1_RNA|ZNF280D_uc010bfp.2_RNA	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	659					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		TGATTTACATAGGCTTTGCTA	0.323												
ZNF280D	54816	broad.mit.edu	37	15	56970887	56970887	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:56970887A>G	uc002adu.2	-	11	1354	c.1137T>C	c.(1135-1137)AGT>AGC	p.S379S	ZNF280D_uc002adv.2_Silent_p.S366S|ZNF280D_uc010bfq.2_Silent_p.S379S|ZNF280D_uc002adw.1_Silent_p.S407S|ZNF280D_uc010bfr.1_RNA|ZNF280D_uc010bfp.2_RNA	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	379	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		GCGTATGTGTACTTTCGATGT	0.398												
SLTM	79811	broad.mit.edu	37	15	59186298	59186298	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:59186298C>T	uc002afp.2	-	11	1560	c.1472G>A	c.(1471-1473)AGA>AAA	p.R491K	SLTM_uc002afn.2_Missense_Mutation_p.R60K|SLTM_uc002afo.2_Missense_Mutation_p.R473K|SLTM_uc002afq.2_Missense_Mutation_p.R60K|SLTM_uc010bgd.2_Missense_Mutation_p.R60K	NM_024755	NP_079031	Q9NWH9	SLTM_HUMAN	modulator of estrogen induced transcription	491					apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)	1						CTTGCTACTTCTATCACTCGT	0.299												
CCNB2	9133	broad.mit.edu	37	15	59417071	59417071	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:59417071T>C	uc002afz.2	+	9	1340	c.1192T>C	c.(1192-1194)TCC>CCC	p.S398P	CCNB2_uc010bge.2_Missense_Mutation_p.S270P	NM_004701	NP_004692	O95067	CCNB2_HUMAN	cyclin B2	398					cell cycle checkpoint|cell division|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	centrosome|cytosol|nucleus	protein kinase binding				0						GATAGGAAGGTCCTAGGCTGC	0.473												
FOXB1	27023	broad.mit.edu	37	15	60297214	60297214	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:60297214T>C	uc002agj.1	+	2	531	c.52T>C	c.(52-54)TAC>CAC	p.Y18H	FOXB1_uc010bgh.1_Intron	NM_012182	NP_036314	Q99853	FOXB1_HUMAN	forkhead box B1	18	Fork-head.				axon target recognition|cell migration in diencephalon|epithelial cell differentiation involved in mammary gland alveolus development|floor plate development|hypothalamus cell migration|inferior colliculus development|lactation|mammillothalamic axonal tract development|negative regulation of neuron apoptosis|regulation of sequence-specific DNA binding transcription factor activity|somitogenesis|telencephalon cell migration|visual learning	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)|central_nervous_system(1)	2						GCCCTACTCGTACATCTCGCT	0.622												
NARG2	79664	broad.mit.edu	37	15	60747243	60747243	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:60747243T>C	uc002agp.2	-	8	1137	c.902A>G	c.(901-903)CAG>CGG	p.Q301R	NARG2_uc002ago.2_Missense_Mutation_p.Q164R|NARG2_uc002agq.3_5'Flank|NARG2_uc010bgk.2_Missense_Mutation_p.Q301R|NARG2_uc002agr.1_Missense_Mutation_p.Q301R	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	301						nucleus				ovary(1)|lung(1)	2						AATTTCCCACTGTTCCTTGTA	0.343												
HERC1	8925	broad.mit.edu	37	15	63952040	63952040	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:63952040G>A	uc002amp.2	-	47	9467	c.9319C>T	c.(9319-9321)CGC>TGC	p.R3107C		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	3107					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						GGTACAATGCGCCGGTCATTT	0.468												
HERC1	8925	broad.mit.edu	37	15	64048790	64048790	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:64048790A>G	uc002amp.2	-	5	1527	c.1379T>C	c.(1378-1380)GTT>GCT	p.V460A	HERC1_uc010uil.1_Intron|HERC1_uc010bgt.1_Missense_Mutation_p.V460A	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	460	WD 1.|RCC1 2.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						AGAAGATGAAACCTTTTTAAT	0.443												
SNX1	6642	broad.mit.edu	37	15	64423957	64423957	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:64423957T>C	uc002amv.2	+	11	1123	c.1087T>C	c.(1087-1089)TTG>CTG	p.L363L	SNX1_uc010bgv.2_Silent_p.L77L|SNX1_uc010uio.1_Silent_p.L363L|SNX1_uc002amw.2_Silent_p.L363L|SNX1_uc002amx.2_Silent_p.L298L|SNX1_uc002amy.2_Silent_p.L292L|SNX1_uc010bgw.2_Silent_p.L265L	NM_003099	NP_003090	Q13596	SNX1_HUMAN	sorting nexin 1 isoform a	363	BAR.				cell communication|early endosome to Golgi transport|endocytosis|intracellular protein transport	early endosome membrane|Golgi apparatus	phosphatidylinositol binding|protein binding|protein transporter activity				0						CAACACGGCATTGTCACGGGC	0.542												
ZNF609	23060	broad.mit.edu	37	15	64966838	64966838	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:64966838G>A	uc002ann.2	+	4	1785	c.1785G>A	c.(1783-1785)GGG>GGA	p.G595G		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	595						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						AGTTGAGTGGGGAAGGGGACA	0.483												
ZNF609	23060	broad.mit.edu	37	15	64972981	64972981	+	Missense_Mutation	SNP	G	G	A	rs142970708		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:64972981G>A	uc002ann.2	+	7	4082	c.4082G>A	c.(4081-4083)CGC>CAC	p.R1361H		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	1361						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						CCTTCCCAGCGCCTGATGTCC	0.617												
DENND4A	10260	broad.mit.edu	37	15	65957726	65957726	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:65957726A>T	uc002aph.2	-	29	5562	c.5184T>A	c.(5182-5184)CAT>CAA	p.H1728Q	DENND4A_uc002api.2_Missense_Mutation_p.H1771Q	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	1728					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						CCGGATCCTGATGTAACTTCA	0.373												
DENND4A	10260	broad.mit.edu	37	15	65983159	65983159	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:65983159T>C	uc002aph.2	-	22	4019	c.3641A>G	c.(3640-3642)AAC>AGC	p.N1214S	DENND4A_uc002api.2_Missense_Mutation_p.N1257S|DENND4A_uc002apj.3_Missense_Mutation_p.N1214S	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	1214					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						ACTGCTCATGTTATTCATATA	0.388												
RAB11A	8766	broad.mit.edu	37	15	66161946	66161946	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:66161946A>G	uc002apk.2	+	1	151	c.23A>G	c.(22-24)TAC>TGC	p.Y8C	RAB11A_uc010ujk.1_Missense_Mutation_p.Y8C	NM_004663	NP_004654	P62491	RB11A_HUMAN	Ras-related protein Rab-11A	8					cell cycle|cytokinesis|neuron projection development|plasma membrane to endosome transport|protein localization in plasma membrane|small GTPase mediated signal transduction|vesicle-mediated transport	cleavage furrow|plasma membrane|recycling endosome membrane|trans-Golgi network	GTP binding|GTPase activity|syntaxin binding				0						GACGACGAGTACGACTACCTC	0.677												
DIS3L	115752	broad.mit.edu	37	15	66612927	66612927	+	Missense_Mutation	SNP	C	C	T	rs150139050		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:66612927C>T	uc010ujm.1	+	9	1198	c.1183C>T	c.(1183-1185)CGC>TGC	p.R395C	DIS3L_uc010ujl.1_Missense_Mutation_p.R25C|DIS3L_uc002app.2_Missense_Mutation_p.R312C|DIS3L_uc002apq.2_Missense_Mutation_p.R395C|DIS3L_uc010bho.2_Missense_Mutation_p.R261C	NM_001143688	NP_001137160	Q8TF46	DI3L1_HUMAN	DIS3 mitotic control homolog (S.	395					rRNA catabolic process	cytoplasm|exosome (RNase complex)	exonuclease activity|protein binding|ribonuclease activity|RNA binding			ovary(2)	2						GGTGGTCGTGCGCATCGATTC	0.453												
PIAS1	8554	broad.mit.edu	37	15	68438968	68438968	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:68438968C>T	uc002aqz.2	+	6	854	c.758C>T	c.(757-759)ACC>ATC	p.T253I	PIAS1_uc010ujx.1_Missense_Mutation_p.T253I	NM_016166	NP_057250	O75925	PIAS1_HUMAN	protein inhibitor of activated STAT, 1	253	PINIT.				androgen receptor signaling pathway|interferon-gamma-mediated signaling pathway|JAK-STAT cascade|positive regulation of protein sumoylation|positive regulation of transcription, DNA-dependent|regulation of interferon-gamma-mediated signaling pathway|transcription, DNA-dependent	nuclear speck	androgen receptor binding|DNA binding|enzyme binding|SUMO ligase activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)	2						ATTAATATCACCTCACTTGTC	0.363												
CALML4	91860	broad.mit.edu	37	15	68489899	68489899	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:68489899G>A	uc002arb.2	-	4	1106	c.372C>T	c.(370-372)GAC>GAT	p.D124D	CALML4_uc002arc.2_Silent_p.D77D|CALML4_uc002ard.2_RNA|CALML4_uc002are.2_RNA|CALML4_uc010bhz.2_Intron	NM_033429	NP_219501	Q96GE6	CALL4_HUMAN	calmodulin-like 4 isoform 1	124	EF-hand 3.						calcium ion binding				0						CTTTCTTTGGGTCTTCTTGTT	0.473												
ITGA11	22801	broad.mit.edu	37	15	68624344	68624344	+	Silent	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:68624344T>G	uc002ari.2	-	14	1710	c.1623A>C	c.(1621-1623)CGA>CGC	p.R541R	ITGA11_uc010bib.2_Silent_p.R541R	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	541	FG-GAP 6.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	AGGACCCAAATCGGGCATTCT	0.527												
KIF23	9493	broad.mit.edu	37	15	69732777	69732777	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:69732777G>A	uc002asb.2	+	17	2135	c.2018G>A	c.(2017-2019)CGA>CAA	p.R673Q	KIF23_uc002asc.2_Missense_Mutation_p.R673Q|KIF23_uc010bii.2_Missense_Mutation_p.R563Q|KIF23_uc010ukc.1_Missense_Mutation_p.R490Q	NM_138555	NP_612565	Q02241	KIF23_HUMAN	kinesin family member 23 isoform 1	673					blood coagulation|cytokinesis|microtubule-based movement|mitosis|mitotic spindle elongation	cytosol|kinesin complex|microtubule|midbody|nucleoplasm|spindle	ATP binding|microtubule motor activity|protein binding				0						TCTCGGGAGCGAGATCGAGAA	0.388												
NR2E3	10002	broad.mit.edu	37	15	72105733	72105733	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:72105733T>C	uc002ati.2	+	6	942	c.752T>C	c.(751-753)ATC>ACC	p.I251T	NR2E3_uc002ath.1_Missense_Mutation_p.I251T	NM_014249	NP_055064	Q9Y5X4	NR2E3_HUMAN	photoreceptor-specific nuclear receptor isoform	251					phototransduction|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0						GCACAGGTGATCCTGCTGGAA	0.602												
ARIH1	25820	broad.mit.edu	37	15	72837173	72837173	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:72837173A>G	uc002aut.3	+	3	770	c.456A>G	c.(454-456)GGA>GGG	p.G152G		NM_005744	NP_005735	Q9Y4X5	ARI1_HUMAN	ariadne ubiquitin-conjugating enzyme E2 binding	152					ubiquitin-dependent protein catabolic process	cytoplasm|ubiquitin ligase complex	ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding				0						ACTTTGATGGAAACCTGGAGA	0.413												
CD276	80381	broad.mit.edu	37	15	73995290	73995290	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:73995290A>G	uc002avv.1	+	4	830	c.596A>G	c.(595-597)CAG>CGG	p.Q199R	CD276_uc010bjd.1_Missense_Mutation_p.Q53R|CD276_uc002avu.1_Missense_Mutation_p.Q199R|CD276_uc002avw.1_Intron|CD276_uc010ulb.1_Missense_Mutation_p.Q145R|CD276_uc002avx.2_5'Flank	NM_001024736	NP_001019907	Q5ZPR3	CD276_HUMAN	CD276 antigen isoform a	199	Extracellular (Potential).|Ig-like C2-type 1.				cell proliferation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of T cell proliferation|regulation of immune response|T cell activation	external side of plasma membrane|integral to membrane	receptor binding			skin(1)	1						GCCAACGAGCAGGGCTTGTTT	0.632												
CCDC33	80125	broad.mit.edu	37	15	74536490	74536490	+	Splice_Site	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:74536490G>T	uc002axo.2	+	2	579	c.185_splice	c.e2+1	p.V62_splice		NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1								protein binding			ovary(3)|skin(2)	5						ATGTGGTGGTGTAAGTAGCTG	0.587												
PPCDC	60490	broad.mit.edu	37	15	75336770	75336770	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:75336770G>A	uc002azo.2	+	4	388	c.275G>A	c.(274-276)CGG>CAG	p.R92Q		NM_021823	NP_068595	Q96CD2	COAC_HUMAN	phosphopantothenoylcysteine decarboxylase	92					coenzyme A biosynthetic process|pantothenate metabolic process	cytosol	phosphopantothenoylcysteine decarboxylase activity				0						ATTGACCTGCGGAGGTGGGCA	0.577												
MAN2C1	4123	broad.mit.edu	37	15	75651057	75651057	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:75651057T>C	uc002baf.2	-	19	2251	c.2234A>G	c.(2233-2235)CAC>CGC	p.H745R	MAN2C1_uc002bag.2_Missense_Mutation_p.H745R|MAN2C1_uc002bah.2_Missense_Mutation_p.H762R|MAN2C1_uc010bkk.2_Missense_Mutation_p.H646R	NM_006715	NP_006706	Q9NTJ4	MA2C1_HUMAN	mannosidase, alpha, class 2C, member 1	745					mannose metabolic process		alpha-mannosidase activity|carbohydrate binding|protein binding|zinc ion binding				0						TGTCTCCAGGTGGTAGTCCAT	0.577												
SCAPER	49855	broad.mit.edu	37	15	77020934	77020934	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:77020934A>G	uc002bby.2	-	16	2224	c.2165_splice	c.e16+1	p.R722_splice	SCAPER_uc010bkr.2_Intron|SCAPER_uc002bbx.2_Splice_Site_p.R476_splice|SCAPER_uc002bbz.1_Splice_Site_p.R593_splice|SCAPER_uc002bca.1_Splice_Site_p.R587_splice|SCAPER_uc002bcb.1_Splice_Site_p.R728_splice	NM_020843	NP_065894	Q9BY12	SCAPE_HUMAN	S-phase cyclin A-associated protein in the ER							endoplasmic reticulum|nucleus	zinc ion binding			large_intestine(1)|lung(1)|ovary(1)	3						CAAATGAGATACCTAGCTCTT	0.373												
SGK269	79834	broad.mit.edu	37	15	77472351	77472351	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:77472351T>C	uc002bcm.2	-	3	2226	c.1918A>G	c.(1918-1920)ATC>GTC	p.I640V	SGK269_uc002bcn.2_Missense_Mutation_p.I640V	NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	640					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		CTTTTGTAGATAGCTAGATTG	0.358												
SGK269	79834	broad.mit.edu	37	15	77474003	77474003	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:77474003A>G	uc002bcm.2	-	3	574	c.266T>C	c.(265-267)CTT>CCT	p.L89P	SGK269_uc002bcn.2_Missense_Mutation_p.L89P	NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	89					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		TTGGATGCTAAGCTCACCACA	0.453												
HMG20A	10363	broad.mit.edu	37	15	77750834	77750834	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:77750834A>G	uc002bcr.2	+	3	286	c.85A>G	c.(85-87)ACT>GCT	p.T29A	HMG20A_uc002bcq.1_Missense_Mutation_p.T29A|HMG20A_uc002bcs.2_Missense_Mutation_p.T29A	NM_018200	NP_060670	Q9NP66	HM20A_HUMAN	high-mobility group 20A	29					chromatin modification	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						TCTGGCTACCACTGGGTAAGC	0.448												
IDH3A	3419	broad.mit.edu	37	15	78452550	78452550	+	Splice_Site	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:78452550T>A	uc002bdd.2	+	4	316	c.289_splice	c.e4+2	p.G97_splice	IDH3A_uc010umt.1_Splice_Site_p.G97_splice|IDH3A_uc010umu.1_Intron|IDH3A_uc002bde.2_Splice_Site_p.G47_splice|IDH3A_uc010umv.1_Splice_Site_p.G47_splice|IDH3A_uc002bdf.2_Splice_Site|IDH3A_uc002bdg.2_Splice_Site_p.G10_splice	NM_005530	NP_005521	P50213	IDH3A_HUMAN	isocitrate dehydrogenase 3 (NAD+) alpha						carbohydrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0					NADH(DB00157)	GCTTGAAAGGTAGCACTGAAG	0.453												
IREB2	3658	broad.mit.edu	37	15	78732202	78732202	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:78732202T>C	uc002bdr.2	+	2	247	c.85T>C	c.(85-87)TCT>CCT	p.S29P	IREB2_uc010unb.1_5'UTR|IREB2_uc002bdq.2_Missense_Mutation_p.S29P	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	29							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		CTTCGATGTATCTAAACTTGG	0.318												
RASGRF1	5923	broad.mit.edu	37	15	79304850	79304850	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:79304850T>C	uc002beq.2	-	14	2221	c.1846A>G	c.(1846-1848)AGG>GGG	p.R616G	RASGRF1_uc002bep.2_Intron|RASGRF1_uc010blm.1_Intron|RASGRF1_uc002ber.3_Intron|RASGRF1_uc010unh.1_Intron	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	616					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						tctgcttccctggtcccCTCC	0.204												
RASGRF1	5923	broad.mit.edu	37	15	79339164	79339164	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:79339164G>A	uc002beq.2	-	5	1177	c.802C>T	c.(802-804)CGC>TGC	p.R268C	RASGRF1_uc002bep.2_Missense_Mutation_p.R268C|RASGRF1_uc010blm.1_Missense_Mutation_p.R190C|RASGRF1_uc002ber.3_Missense_Mutation_p.R268C	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	268	DH.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CGCAGCGGGCGCAGGAAATTG	0.587												
KIAA1024	23251	broad.mit.edu	37	15	79748861	79748861	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:79748861G>A	uc002bew.1	+	2	447	c.372G>A	c.(370-372)TCG>TCA	p.S124S	KIAA1024_uc010unk.1_Silent_p.S124S	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	124						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						CATGTAGGTCGGACACAGAGA	0.567												
KIAA1024	23251	broad.mit.edu	37	15	79749423	79749423	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:79749423T>C	uc002bew.1	+	2	1009	c.934T>C	c.(934-936)TAC>CAC	p.Y312H	KIAA1024_uc010unk.1_Missense_Mutation_p.Y312H	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	312						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						TAACAGCCAGTACCTGAATCC	0.507												
ZFAND6	54469	broad.mit.edu	37	15	80429859	80429859	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:80429859A>G	uc002bfe.1	+	7	827	c.516A>G	c.(514-516)GTA>GTG	p.V172V	ZFAND6_uc002bff.1_Silent_p.V172V|ZFAND6_uc002bfg.1_Silent_p.V160V|ZFAND6_uc002bfh.1_Silent_p.V172V|ZFAND6_uc002bfi.1_Silent_p.V172V	NM_019006	NP_061879	Q6FIF0	ZFAN6_HUMAN	zinc finger, AN1-type domain 6	172	AN1-type.						DNA binding|zinc ion binding				0						ACTGTGGTGTACACCGTTACT	0.383												
AP3B2	8120	broad.mit.edu	37	15	83328679	83328679	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:83328679G>A	uc010uoh.1	-	25	3193	c.3016C>T	c.(3016-3018)CGG>TGG	p.R1006W	AP3B2_uc010uoi.1_Missense_Mutation_p.R1025W|AP3B2_uc010uoj.1_Missense_Mutation_p.R974W|AP3B2_uc010bmp.2_Missense_Mutation_p.R69W|AP3B2_uc010uog.1_Missense_Mutation_p.R642W	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	1006					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			TGGTCACTCCGACAGGTGTCT	0.547												
ADAMTSL3	57188	broad.mit.edu	37	15	84566740	84566740	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:84566740C>A	uc002bjz.3	+	14	1822	c.1598C>A	c.(1597-1599)CCG>CAG	p.P533Q	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.P533Q|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.P533Q	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	533	TSP type-1 3.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			ATTCCCATCCCGTGTTATAAA	0.423												
ZSCAN2	54993	broad.mit.edu	37	15	85164847	85164847	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:85164847A>G	uc002bkr.2	+	3	1647	c.1421A>G	c.(1420-1422)TAC>TGC	p.Y474C	ZSCAN2_uc010bmz.1_Missense_Mutation_p.Y472C|ZSCAN2_uc010bna.2_Missense_Mutation_p.Y324C|ZSCAN2_uc010uox.1_Intron|ZSCAN2_uc010uoy.1_Intron|ZSCAN2_uc010uoz.1_Intron	NM_181877	NP_870992	Q7Z7L9	ZSCA2_HUMAN	zinc finger protein 29 isoform 1	474	C2H2-type 10.				cell differentiation|multicellular organismal development|spermatogenesis|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (272;0.168)|all cancers(203;5.43e-22)		GAGAAACCCTACGAGTGCCTG	0.562												
ALPK3	57538	broad.mit.edu	37	15	85411579	85411579	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:85411579T>C	uc002ble.2	+	14	5783	c.5616T>C	c.(5614-5616)AGT>AGC	p.S1872S	ALPK3_uc010upc.1_Silent_p.S173S	NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1872					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CCCGGAAGAGTGCTCCAAGTT	0.617												
PDE8A	5151	broad.mit.edu	37	15	85664157	85664157	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:85664157A>G	uc002blh.2	+	18	2053	c.1864A>G	c.(1864-1866)ACT>GCT	p.T622A	PDE8A_uc002bli.2_Missense_Mutation_p.T576A|PDE8A_uc010bnc.2_Missense_Mutation_p.T375A|PDE8A_uc010bnd.2_Missense_Mutation_p.T375A|PDE8A_uc002blj.2_Missense_Mutation_p.T242A|PDE8A_uc002blk.2_Missense_Mutation_p.T242A|PDE8A_uc002bll.2_5'UTR	NM_002605	NP_002596	O60658	PDE8A_HUMAN	phosphodiesterase 8A isoform 1	622	Catalytic (By similarity).				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(223;0.227)		BRCA - Breast invasive adenocarcinoma(143;0.0608)			GTACAATGACACTGCTGTGCT	0.483												
AKAP13	11214	broad.mit.edu	37	15	86064750	86064750	+	Missense_Mutation	SNP	G	G	A	rs142964345	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:86064750G>A	uc002blv.1	+	3	295	c.125G>A	c.(124-126)CGT>CAT	p.R42H	AKAP13_uc002bls.2_Missense_Mutation_p.R42H|AKAP13_uc002blt.1_Missense_Mutation_p.R42H|AKAP13_uc002blu.1_Missense_Mutation_p.R42H	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	42					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						TCCACCCTCCGTCACTGTACA	0.428												
AKAP13	11214	broad.mit.edu	37	15	86278223	86278223	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:86278223T>C	uc002blv.1	+	31	7453	c.7283T>C	c.(7282-7284)GTG>GCG	p.V2428A	AKAP13_uc002blu.1_Missense_Mutation_p.V2432A|AKAP13_uc002blw.1_Missense_Mutation_p.V893A|AKAP13_uc002blx.1_Missense_Mutation_p.V673A	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2428	Interaction with ESR1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						TTTATTCCAGTGGAGATCCTT	0.468												
AKAP13	11214	broad.mit.edu	37	15	86284281	86284281	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:86284281T>C	uc002blv.1	+	35	7783	c.7613T>C	c.(7612-7614)GTG>GCG	p.V2538A	AKAP13_uc002blu.1_Missense_Mutation_p.V2542A|AKAP13_uc002blw.1_Missense_Mutation_p.V1003A|AKAP13_uc002blx.1_Missense_Mutation_p.V783A	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2538	Interaction with ESR1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						TCCCAGGGTGTGGTGCTGCAG	0.647												
HAPLN3	145864	broad.mit.edu	37	15	89421322	89421322	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:89421322A>G	uc002bnc.2	-	5	1090	c.962T>C	c.(961-963)GTC>GCC	p.V321A	HAPLN3_uc002bne.2_RNA|HAPLN3_uc002bnd.2_Missense_Mutation_p.V383A	NM_178232	NP_839946	Q96S86	HPLN3_HUMAN	hyaluronan and proteoglycan link protein 3	321	Link 2.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	Lung NSC(78;0.0392)|all_lung(78;0.077)					AGGGTAGCGGACGCTACCATC	0.637												
RHCG	51458	broad.mit.edu	37	15	90021067	90021067	+	Splice_Site	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:90021067C>T	uc002bnz.2	-	6	999	c.975_splice	c.e6+1	p.T325_splice	RHCG_uc002bny.2_Splice_Site_p.T96_splice|RHCG_uc002boa.2_Splice_Site|RHCG_uc010bnq.1_Missense_Mutation_p.V210I	NM_016321	NP_057405	Q9UBD6	RHCG_HUMAN	Rh family, C glycoprotein						amine transport|cellular ion homeostasis|epithelial cell differentiation|transepithelial ammonium transport	apical plasma membrane|basolateral plasma membrane|cytoplasmic vesicle|integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			kidney(1)	1	Lung NSC(78;0.0237)|all_lung(78;0.0478)					GGGGCACTTACGGTCAGGTAT	0.587												
RHCG	51458	broad.mit.edu	37	15	90026320	90026320	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:90026320A>G	uc002bnz.2	-	3	524	c.500T>C	c.(499-501)TTC>TCC	p.F167S	RHCG_uc002boa.2_RNA|RHCG_uc010bnq.1_Missense_Mutation_p.F51S	NM_016321	NP_057405	Q9UBD6	RHCG_HUMAN	Rh family, C glycoprotein	167	Helical; (Potential).				amine transport|cellular ion homeostasis|epithelial cell differentiation|transepithelial ammonium transport	apical plasma membrane|basolateral plasma membrane|cytoplasmic vesicle|integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			kidney(1)	1	Lung NSC(78;0.0237)|all_lung(78;0.0478)					AAGGAGAATGAACTCATTCAC	0.532												
C15orf42	90381	broad.mit.edu	37	15	90167812	90167812	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:90167812A>G	uc002boe.2	+	20	4271	c.4271A>G	c.(4270-4272)CAG>CGG	p.Q1424R	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1424					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			AGAGATGACCAGAAGGGACTG	0.597												
KIF7	374654	broad.mit.edu	37	15	90171867	90171867	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:90171867G>A	uc002bof.2	-	19	3892	c.3815C>T	c.(3814-3816)CCG>CTG	p.P1272L	KIF7_uc010upw.1_Missense_Mutation_p.P758L|C15orf42_uc010upv.1_Intron	NM_198525	NP_940927	Q2M1P5	KIF7_HUMAN	kinesin family member 7	1272					microtubule-based movement|negative regulation of smoothened signaling pathway|positive regulation of smoothened signaling pathway	cilium	ATP binding|microtubule motor activity|protein binding			ovary(2)|lung(1)	3	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			CAAGGGTAACGGAGCGTGGAC	0.697												
ANPEP	290	broad.mit.edu	37	15	90346959	90346959	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:90346959G>T	uc002bop.3	-	8	1648	c.1356C>A	c.(1354-1356)TCC>TCA	p.S452S		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	452	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	ACAGCGGGTGGGAGGAGGCCA	0.607												
SEMA4B	10509	broad.mit.edu	37	15	90766816	90766816	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:90766816T>C	uc002boy.2	+	9	1170	c.887T>C	c.(886-888)CTA>CCA	p.L296P	SEMA4B_uc002boz.2_Missense_Mutation_p.L296P|SEMA4B_uc010uqd.1_Missense_Mutation_p.L134P|SEMA4B_uc002bpa.2_Missense_Mutation_p.L134P|SEMA4B_uc010bnv.1_5'UTR	NM_020210	NP_064595			semaphorin 4B precursor											ovary(1)|breast(1)|kidney(1)	3	Melanoma(11;0.00551)|Lung NSC(78;0.0125)|all_lung(78;0.0272)		BRCA - Breast invasive adenocarcinoma(143;0.0107)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.217)			GAGCGGGTGCTACAGCAGCGC	0.642												
NGRN	51335	broad.mit.edu	37	15	90808954	90808954	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:90808954A>G	uc002bpf.1	+	1	60	c.10A>G	c.(10-12)ACC>GCC	p.T4A	TTLL13_uc002bpe.1_Intron|NGRN_uc002bpg.1_5'UTR	NM_001033088	NP_001028260	Q9NPE2	NGRN_HUMAN	neugrin	4					neuron differentiation	extracellular region|nucleus				large_intestine(2)|ovary(1)	3	Melanoma(11;0.00551)|Lung NSC(78;0.0178)|all_lung(78;0.0378)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|BRCA - Breast invasive adenocarcinoma(143;0.0323)|Kidney(142;0.0514)			CATGGCGGTTACCCTGAGTCT	0.687												
IQGAP1	8826	broad.mit.edu	37	15	90972889	90972889	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:90972889A>G	uc002bpl.1	+	4	482	c.381A>G	c.(379-381)GGA>GGG	p.G127G		NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	127	CH.				energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			ATGAGATTGGATTGCCTAAGG	0.378												
IQGAP1	8826	broad.mit.edu	37	15	90984789	90984789	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:90984789C>T	uc002bpl.1	+	8	802	c.701C>T	c.(700-702)GCC>GTC	p.A234V		NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	234					energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			AGAATTCCAGCCGACACATTT	0.368												
FES	2242	broad.mit.edu	37	15	91435964	91435964	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:91435964C>T	uc002bpv.2	+	14	1831	c.1735C>T	c.(1735-1737)CGC>TGC	p.R579C	FES_uc010uqj.1_Missense_Mutation_p.R451C|FES_uc010uqk.1_Missense_Mutation_p.R561C|FES_uc002bpw.2_RNA|FES_uc010bny.2_Missense_Mutation_p.R451C|FES_uc002bpx.2_Missense_Mutation_p.R509C|FES_uc002bpy.2_Missense_Mutation_p.R521C	NM_002005	NP_001996	P07332	FES_HUMAN	feline sarcoma oncogene isoform 1	579	Protein kinase.				axon guidance|cell proliferation|peptidyl-tyrosine phosphorylation	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GTTCAGCGGACGCCTGCGAGC	0.592												
FES	2242	broad.mit.edu	37	15	91437188	91437188	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:91437188C>T	uc002bpv.2	+	18	2322	c.2226C>T	c.(2224-2226)GAC>GAT	p.D742D	FES_uc010uqj.1_Silent_p.D614D|FES_uc010uqk.1_Silent_p.D724D|FES_uc002bpw.2_Intron|FES_uc010bny.2_Silent_p.D601D|FES_uc002bpx.2_Silent_p.D672D|FES_uc002bpy.2_Silent_p.D684D	NM_002005	NP_001996	P07332	FES_HUMAN	feline sarcoma oncogene isoform 1	742	Protein kinase.				axon guidance|cell proliferation|peptidyl-tyrosine phosphorylation	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			CCGAAAGCGACGTGTGGAGCT	0.652												
MAN2A2	4122	broad.mit.edu	37	15	91449168	91449168	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:91449168G>A	uc010bnz.2	+	5	744	c.629G>A	c.(628-630)CGC>CAC	p.R210H	MAN2A2_uc010boa.2_Missense_Mutation_p.R252H|MAN2A2_uc002bqc.2_Missense_Mutation_p.R210H|MAN2A2_uc010uql.1_5'Flank|MAN2A2_uc010uqm.1_5'Flank	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	210	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			CCCCGGCGGCGCTTCCTCTGG	0.572												
UNC45A	55898	broad.mit.edu	37	15	91493834	91493834	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:91493834C>T	uc002bqg.2	+	17	2632	c.2292C>T	c.(2290-2292)AGC>AGT	p.S764S	UNC45A_uc002bqd.2_Silent_p.S749S|UNC45A_uc010uqr.1_Silent_p.S156S|UNC45A_uc002bqi.2_Silent_p.S42S	NM_018671	NP_061141	Q9H3U1	UN45A_HUMAN	smooth muscle cell associated protein-1 isoform	764					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			CTGGGATCAGCGAGAGGCTCC	0.592												
NR2F2	7026	broad.mit.edu	37	15	96877521	96877521	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:96877521T>C	uc010uri.1	+	2	1883	c.659T>C	c.(658-660)CTC>CCC	p.L220P	NR2F2_uc002btp.2_Missense_Mutation_p.L87P|NR2F2_uc010urj.1_Missense_Mutation_p.L67P|NR2F2_uc010urk.1_Missense_Mutation_p.L67P	NM_021005	NP_066285	P24468	COT2_HUMAN	nuclear receptor subfamily 2, group F, member 2	220	Interaction with ZFPM2 (By similarity).|Ligand-binding (By similarity).				lipid metabolic process|negative regulation of cyclin-dependent protein kinase activity|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment	nucleus	ligand-regulated transcription factor activity|protein homodimerization activity|retinoic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(1)	3	Lung NSC(78;0.0186)|Melanoma(26;0.0195)|all_lung(78;0.0297)		OV - Ovarian serous cystadenocarcinoma(32;0.0856)			GCGAGGATGCTCTTCAGCGCC	0.627												
FAM169B	283777	broad.mit.edu	37	15	99029181	99029181	+	Translation_Start_Site	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:99029181G>T	uc002buk.1	-	3	196	c.-54C>A	c.(-56--52)TCCTG>TCATG			NM_182562	NP_872368	Q8N8A8	F169B_HUMAN	hypothetical protein LOC283777												0						TGGAGCACCAGGATTCCTTTA	0.458												
ADAMTS17	170691	broad.mit.edu	37	15	100589167	100589167	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:100589167C>T	uc002bvv.1	-	18	2565	c.2486G>A	c.(2485-2487)CGG>CAG	p.R829Q		NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	829	TSP type-1 2.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		GTTGACAATCCGTGTACACGA	0.597												
LRRK1	79705	broad.mit.edu	37	15	101606897	101606897	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:101606897C>T	uc002bwr.2	+	33	6140	c.5821C>T	c.(5821-5823)CGG>TGG	p.R1941W	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bws.2_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1941					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TGGCGCCCAGCGGGGCCGAGT	0.582												
PCSK6	5046	broad.mit.edu	37	15	101924598	101924598	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:101924598A>C	uc002bwy.2	-	11	1657	c.1343T>G	c.(1342-1344)CTG>CGG	p.L448R	PCSK6_uc010bpd.2_Intron|PCSK6_uc010bpe.2_Missense_Mutation_p.L448R|PCSK6_uc002bxa.2_Missense_Mutation_p.L448R|PCSK6_uc002bxb.2_Missense_Mutation_p.L448R|PCSK6_uc002bxc.1_Missense_Mutation_p.L448R|PCSK6_uc002bxd.1_Missense_Mutation_p.L448R|PCSK6_uc002bxe.2_Missense_Mutation_p.L448R|PCSK6_uc002bxg.1_Missense_Mutation_p.L448R|PCSK6_uc002bxf.1_5'Flank	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	448	Catalytic.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CTTCACTAGCAGGTGCTGGAC	0.592												
PCSK6	5046	broad.mit.edu	37	15	101933449	101933449	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:101933449A>G	uc002bwy.2	-	9	1491	c.1177T>C	c.(1177-1179)TAC>CAC	p.Y393H	PCSK6_uc010bpd.2_Missense_Mutation_p.Y263H|PCSK6_uc010bpe.2_Missense_Mutation_p.Y393H|PCSK6_uc002bxa.2_Missense_Mutation_p.Y393H|PCSK6_uc002bxb.2_Missense_Mutation_p.Y393H|PCSK6_uc002bxc.1_Missense_Mutation_p.Y393H|PCSK6_uc002bxd.1_Missense_Mutation_p.Y393H|PCSK6_uc002bxe.2_Missense_Mutation_p.Y393H|PCSK6_uc002bxg.1_Missense_Mutation_p.Y393H	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	393	Catalytic.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CCACTGCTGTAGGTGGTGGCC	0.537												
TARSL2	123283	broad.mit.edu	37	15	102197159	102197159	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:102197159T>C	uc002bxm.2	-	18	2281	c.2226A>G	c.(2224-2226)CGA>CGG	p.R742R	TARSL2_uc002bxl.2_3'UTR|TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	742					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GCTGTGCATTTCGTATTTTCT	0.318												
OR4F6	390648	broad.mit.edu	37	15	102346378	102346378	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:102346378T>C	uc010utr.1	+	1	456	c.456T>C	c.(454-456)GGT>GGC	p.G152G		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			GGATTATAGGTATTATTCACT	0.393												
RHBDF1	64285	broad.mit.edu	37	16	108423	108423	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:108423G>A	uc002cfl.3	-	21	2632	c.2484C>T	c.(2482-2484)CGC>CGT	p.R828R		NM_022450	NP_071895	Q96CC6	RHDF1_HUMAN	rhomboid family 1	828	Lumenal (Potential).				cell migration|cell proliferation|negative regulation of protein secretion|protein transport|proteolysis|regulation of epidermal growth factor receptor signaling pathway|regulation of proteasomal protein catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity			ovary(1)|pancreas(1)	2		all_cancers(16;2.56e-05)|all_epithelial(16;0.000116)|Hepatocellular(780;0.0068)|Lung NSC(18;0.0795)|all_lung(18;0.159)				ACCACTCACAGCGGACAGGAT	0.577												
AXIN1	8312	broad.mit.edu	37	16	364605	364605	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:364605G>A	uc002cgp.1	-	3	1134	c.957C>T	c.(955-957)AAC>AAT	p.N319N	AXIN1_uc002cgq.1_Silent_p.N319N	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	319	Interaction with TP53 (By similarity).				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				GCTCGCTGTCGTTGGCACTGG	0.627												
RAB11FIP3	9727	broad.mit.edu	37	16	511444	511444	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:511444G>A	uc002chf.2	+	2	1094	c.755G>A	c.(754-756)GGC>GAC	p.G252D		NM_014700	NP_055515	O75154	RFIP3_HUMAN	rab11-family interacting protein 3 isoform 1	252	EF-hand 2.|2 (Potential).				cell cycle|cytokinesis|endocytic recycling|protein transport	centrosome|cleavage furrow|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding				0		Hepatocellular(16;0.0218)				AGTGGGCTCGGCGTGATCAGC	0.473												
WDR90	197335	broad.mit.edu	37	16	701657	701657	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:701657G>A	uc002cii.1	+	8	804	c.750G>A	c.(748-750)CCG>CCA	p.P250P	WDR90_uc002cig.1_Silent_p.P250P|WDR90_uc002cih.1_Silent_p.P250P|WDR90_uc002cij.1_RNA	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	250										ovary(1)	1		Hepatocellular(780;0.0218)				TCCTGGGGCCGGGGCCACAGC	0.662												
MSLNL	401827	broad.mit.edu	37	16	825480	825480	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:825480C>T	uc002cjz.1	-	5	1281	c.1281G>A	c.(1279-1281)GCG>GCA	p.A427A		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	integral to membrane				breast(3)|ovary(1)	4						CGCACCGTGACGCCAGGTTGG	0.697												
CACNA1H	8912	broad.mit.edu	37	16	1262117	1262117	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:1262117C>T	uc002cks.2	+	25	4986	c.4738C>T	c.(4738-4740)CGC>TGC	p.R1580C	CACNA1H_uc002ckt.2_Missense_Mutation_p.R1580C|CACNA1H_uc002cku.2_Missense_Mutation_p.R286C|CACNA1H_uc010brj.2_Missense_Mutation_p.R286C|CACNA1H_uc002ckv.2_Missense_Mutation_p.R286C	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	1580	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GCGGCTGCGGCGCCTAGAGAG	0.711												
TPSG1	25823	broad.mit.edu	37	16	1272025	1272025	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:1272025A>G	uc002ckw.2	-	6	731	c.729T>C	c.(727-729)GGT>GGC	p.G243G		NM_012467	NP_036599	Q9NRR2	TRYG1_HUMAN	transmembrane tryptase preproprotein	243	Peptidase S1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				CGCAGCCCTCACCCCAGCTCA	0.662												
BAIAP3	8938	broad.mit.edu	37	16	1394813	1394813	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:1394813A>G	uc002clk.1	+	20	1877	c.1877A>G	c.(1876-1878)GAC>GGC	p.D626G	BAIAP3_uc002clj.2_Missense_Mutation_p.D608G|BAIAP3_uc010uuz.1_Missense_Mutation_p.D591G|BAIAP3_uc010uva.1_Missense_Mutation_p.D563G|BAIAP3_uc010uvc.1_Missense_Mutation_p.D555G	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	626					G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				CTCAATGTGGACGTCTTCACC	0.662												
IFT140	9742	broad.mit.edu	37	16	1652558	1652558	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:1652558G>A	uc002cmb.2	-	4	544	c.182C>T	c.(181-183)CCG>CTG	p.P61L		NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	61	WD 2.									ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				AACCCGGAACGGCCTCTCGAC	0.572												
MAPK8IP3	23162	broad.mit.edu	37	16	1797135	1797135	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:1797135G>A	uc002cmk.2	+	6	970	c.850G>A	c.(850-852)GCC>ACC	p.A284T	MAPK8IP3_uc002cmj.1_RNA|MAPK8IP3_uc002cml.2_Missense_Mutation_p.A284T|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.A285T	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	284					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						GCCCTCGGCCGCCGTCACACC	0.662												
MAPK8IP3	23162	broad.mit.edu	37	16	1812944	1812944	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:1812944G>A	uc002cmk.2	+	16	1952	c.1832G>A	c.(1831-1833)CGC>CAC	p.R611H	MAPK8IP3_uc002cml.2_Missense_Mutation_p.R605H|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.R612H	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	611					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						TTCAGCCAGCGCCGCAACCAT	0.652												
MAPK8IP3	23162	broad.mit.edu	37	16	1818228	1818228	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:1818228G>T	uc002cmk.2	+	30	3708	c.3588G>T	c.(3586-3588)GAG>GAT	p.E1196D	MAPK8IP3_uc002cml.2_Missense_Mutation_p.E1190D|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.E1197D	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	1196					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						CCTCTGGGGAGGGCGCCCGTC	0.662												
NUBP2	10101	broad.mit.edu	37	16	1836918	1836918	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:1836918C>T	uc002cmw.3	+	3	385	c.296C>T	c.(295-297)CCG>CTG	p.P99L	NUBP2_uc002cmx.3_Intron|NUBP2_uc010brx.2_Missense_Mutation_p.P39L	NM_012225	NP_036357	Q9Y5Y2	NUBP2_HUMAN	nucleotide binding protein 2 (MinD homolog, E.	99						microtubule organizing center|nucleus	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|protein binding				0						CTGGAGAAGCCGGACGAGGCC	0.687												
RNF151	146310	broad.mit.edu	37	16	2018579	2018579	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:2018579C>A	uc002cnt.1	+	4	399	c.391C>A	c.(391-393)CGG>AGG	p.R131R		NM_174903	NP_777563	Q2KHN1	RN151_HUMAN	ring finger protein 151	131	TRAF-type.				cell differentiation|spermatogenesis	cytoplasm|nucleus	ubiquitin-protein ligase activity|zinc ion binding				0						GGCAGAGCACCGGCAGCATTG	0.706												
PKD1	5310	broad.mit.edu	37	16	2153699	2153699	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:2153699G>A	uc002cos.1	-	23	8568	c.8359C>T	c.(8359-8361)CGC>TGC	p.R2787C	PKD1_uc002cot.1_Missense_Mutation_p.R2787C|PKD1_uc010bse.1_RNA	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2787	Extracellular (Potential).|REJ.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						GGGTCCGAGCGCTTGCCCTGG	0.701												
CASKIN1	57524	broad.mit.edu	37	16	2237034	2237034	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:2237034T>A	uc010bsg.1	-	9	907	c.875A>T	c.(874-876)TAT>TTT	p.Y292F		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	292	SH3.				signal transduction	cytoplasm				skin(2)	2						ATTGTTGCAATAATCCTTGGT	0.657												
C16orf79	283870	broad.mit.edu	37	16	2259973	2259973	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:2259973C>T	uc010bsh.2	-	4	593	c.416G>A	c.(415-417)CGG>CAG	p.R139Q	C16orf79_uc002cpi.1_Missense_Mutation_p.R139Q	NM_182563	NP_872369	Q6PL45	CP079_HUMAN	hypothetical protein LOC283870	139	BRICHOS.					integral to membrane				central_nervous_system(1)	1						CACCAGCAGCCGCAGGGTCTC	0.672												
E4F1	1877	broad.mit.edu	37	16	2278379	2278379	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:2278379A>G	uc002cpm.2	+	2	212	c.164A>G	c.(163-165)GAC>GGC	p.D55G	E4F1_uc010bsi.2_Missense_Mutation_p.D55G|E4F1_uc010bsj.2_Missense_Mutation_p.D55G	NM_004424	NP_004415	Q66K89	E4F1_HUMAN	p120E4F	55	Required for ubiquitin ligase activity.				cell division|cell proliferation|interspecies interaction between organisms|mitosis|regulation of growth	cytoplasm|nucleoplasm	DNA binding|ligase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						GCAGATGAGGACGATGTGCAC	0.627												
ABCA3	21	broad.mit.edu	37	16	2369674	2369674	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:2369674A>G	uc002cpy.1	-	8	1493	c.781T>C	c.(781-783)TAC>CAC	p.Y261H	ABCA3_uc010bsk.1_Missense_Mutation_p.Y261H|ABCA3_uc010bsl.1_Missense_Mutation_p.Y261H	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	261	Helical; (Potential).				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				GGCAGCTGGTACTGGATGGCC	0.622												
NTN3	4917	broad.mit.edu	37	16	2522124	2522124	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:2522124G>A	uc002cqj.2	+	1	625	c.422G>A	c.(421-423)GGC>GAC	p.G141D		NM_006181	NP_006172	O00634	NET3_HUMAN	netrin 3 precursor	141	Laminin N-terminal.				axon guidance|muscle cell differentiation|positive regulation of muscle cell differentiation	proteinaceous extracellular matrix				central_nervous_system(1)	1						CAGGACCATGGCCGCAGCTGG	0.672												
SRRM2	23524	broad.mit.edu	37	16	2816641	2816641	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:2816641C>T	uc002crk.2	+	11	6661	c.6112C>T	c.(6112-6114)CCA>TCA	p.P2038S	SRRM2_uc002crj.1_Missense_Mutation_p.P1942S|SRRM2_uc002crl.1_Missense_Mutation_p.P2038S|SRRM2_uc010bsu.1_Missense_Mutation_p.P1942S	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	2038	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GCCACTGTTACCACGCAAACG	0.597												
CLDN9	9080	broad.mit.edu	37	16	3063692	3063692	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:3063692A>G	uc010uwo.1	+	1	1236	c.329A>G	c.(328-330)GAC>GGC	p.D110G		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	110	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGTGTGGAGGACGAAGGTGCC	0.667												
ZSCAN10	84891	broad.mit.edu	37	16	3139421	3139421	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:3139421G>A	uc002ctv.1	-	5	1937	c.1849C>T	c.(1849-1851)CGC>TGC	p.R617C	ZSCAN10_uc002cty.1_Missense_Mutation_p.R278C|ZSCAN10_uc002ctw.1_Missense_Mutation_p.R535C|ZSCAN10_uc002ctx.1_Missense_Mutation_p.R545C	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	617	C2H2-type 11.				negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GAGCTATTGCGGAAACGGTGG	0.701												
MEFV	4210	broad.mit.edu	37	16	3297108	3297108	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:3297108C>T	uc002cun.1	-	5	1535	c.1495G>A	c.(1495-1497)GAC>AAC	p.D499N		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	499					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	ACGCGGGTGTCATATGCCTTC	0.577												
ZNF75A	7627	broad.mit.edu	37	16	3363138	3363138	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:3363138T>C	uc002cut.3	+	4	589	c.63T>C	c.(61-63)GAT>GAC	p.D21D	ZNF75A_uc002cuv.3_Intron	NM_153028	NP_694573	Q96N20	ZN75A_HUMAN	zinc finger protein 75a	21	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						TCTACAATGATGTAATGCAGG	0.408												
BTBD12	84464	broad.mit.edu	37	16	3640761	3640761	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:3640761T>C	uc002cvp.2	-	12	3505	c.2878A>G	c.(2878-2880)AGC>GGC	p.S960G		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	960	Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CTGGAAGGGCTGGAGCAGCTG	0.637								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia			
DNASE1	1773	broad.mit.edu	37	16	3707235	3707235	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:3707235A>G	uc002cvr.2	+	7	2704	c.597A>G	c.(595-597)AGA>AGG	p.R199R		NM_005223	NP_005214	P24855	DNAS1_HUMAN	deoxyribonuclease I precursor	199					apoptosis|DNA catabolic process	extracellular region|nuclear envelope	actin binding|deoxyribonuclease I activity				0		Ovarian(90;0.0261)		Kidney(780;0.0556)	Dornase Alfa(DB00003)	GCTATGTGAGACCCTCCCAGT	0.632								Direct_reversal_of_damage				
CREBBP	1387	broad.mit.edu	37	16	3828788	3828788	+	Silent	SNP	G	G	A	rs61754522		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:3828788G>A	uc002cvv.2	-	9	2058	c.1854C>T	c.(1852-1854)CCC>CCT	p.P618P	CREBBP_uc002cvw.2_Silent_p.P580P	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	618	KIX.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TTAGAGCTGCGGGATCAGGTG	0.448			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome			
DNAJA3	9093	broad.mit.edu	37	16	4492327	4492327	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:4492327T>C	uc002cwk.2	+	5	714	c.689T>C	c.(688-690)GTG>GCG	p.V230A	DNAJA3_uc002cwl.2_Missense_Mutation_p.V230A|DNAJA3_uc010uxk.1_Missense_Mutation_p.V77A	NM_005147	NP_005138	Q96EY1	DNJA3_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 3	230	CR-type.				activation of caspase activity|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of cell proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein kinase activity|neuromuscular junction development|positive regulation of apoptosis|positive regulation of protein ubiquitination|protein folding|protein folding|protein stabilization|response to heat|response to interferon-gamma	cytosol|mitochondrial matrix|mitochondrial nucleoid|nucleus	ATP binding|heat shock protein binding|interferon-gamma receptor binding|metal ion binding|NF-kappaB binding|protein kinase binding			ovary(2)|breast(2)	4						GAGTTCACCGTGAACATCATG	0.532												
NMRAL1	57407	broad.mit.edu	37	16	4513759	4513759	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:4513759C>T	uc002cwm.2	-	5	778	c.622G>A	c.(622-624)GTC>ATC	p.V208I	NMRAL1_uc002cwn.2_Missense_Mutation_p.V208I|NMRAL1_uc002cwo.2_Missense_Mutation_p.V208I|NMRAL1_uc002cwp.2_Missense_Mutation_p.V244I	NM_020677	NP_065728	Q9HBL8	NMRL1_HUMAN	NmrA-like family domain containing 1	208						nucleus|perinuclear region of cytoplasm	binding			kidney(1)	1						TTCTGGCCGACGTATTTTTCT	0.602												
UBN1	29855	broad.mit.edu	37	16	4911013	4911013	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:4911013G>A	uc002cyb.2	+	7	1359	c.1020G>A	c.(1018-1020)GGG>GGA	p.G340G	UBN1_uc010uxw.1_Silent_p.G340G|UBN1_uc002cyc.2_Silent_p.G340G	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	340					chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						ATTCCCTTGGGGTGGGATTGG	0.572												
PPL	5493	broad.mit.edu	37	16	4933734	4933734	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:4933734C>G	uc002cyd.1	-	22	5012	c.4922G>C	c.(4921-4923)GGC>GCC	p.G1641A		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	1641	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						GGCCACGGAGCCCAGGCGCTT	0.637												
CIITA	4261	broad.mit.edu	37	16	11001507	11001507	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:11001507C>A	uc002dai.3	+	11	2291	c.2158C>A	c.(2158-2160)CTG>ATG	p.L720M	CIITA_uc002daj.3_Missense_Mutation_p.L721M|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Missense_Mutation_p.L720M|CIITA_uc002dah.2_Missense_Mutation_p.L672M|CIITA_uc010bup.1_Intron	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	720	NACHT.				interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						CCTGGGGGCCCTGTGGCTGGC	0.622			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|							
SOCS1	8651	broad.mit.edu	37	16	11348957	11348957	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:11348957G>A	uc002dar.1	-	2	533	c.379C>T	c.(379-381)CGC>TGC	p.R127C	C16orf75_uc002daq.1_Intron	NM_003745	NP_003736	O15524	SOCS1_HUMAN	suppressor of cytokine signaling 1	127	SH2.				interferon-gamma-mediated signaling pathway|JAK-STAT cascade|negative regulation of insulin receptor signaling pathway|negative regulation of tyrosine phosphorylation of Stat3 protein|regulation of growth|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytosol	insulin-like growth factor receptor binding|protein kinase binding|protein kinase inhibitor activity	p.Y64fs*1(1)|p.R127_*212del(1)		haematopoietic_and_lymphoid_tissue(64)|lung(3)|breast(1)|central_nervous_system(1)	69						AAGTGCACGCGGATGCTCGTG	0.687			F|O		Hodgkin Lymphoma|PMBL							
ZC3H7A	29066	broad.mit.edu	37	16	11861389	11861389	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:11861389T>G	uc002dbk.2	-	12	1604	c.1406A>C	c.(1405-1407)AAG>ACG	p.K469T	ZC3H7A_uc002dbj.2_5'Flank|ZC3H7A_uc002dbl.2_Missense_Mutation_p.K469T|ZC3H7A_uc002dbm.1_Missense_Mutation_p.K379T	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	469						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TTTCTTACACTTATGATCTAT	0.299												
ZC3H7A	29066	broad.mit.edu	37	16	11868834	11868834	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:11868834A>G	uc002dbk.2	-	7	817	c.619_splice	c.e7+1	p.D207_splice	ZC3H7A_uc002dbl.2_Splice_Site_p.D207_splice|ZC3H7A_uc002dbm.1_Splice_Site_p.D207_splice	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A							nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GTGAAAACATACCTGGCTCAA	0.333												
CPPED1	55313	broad.mit.edu	37	16	12798799	12798799	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:12798799T>C	uc002dca.3	-	3	508	c.397A>G	c.(397-399)ACC>GCC	p.T133A	CPPED1_uc002dcb.3_Intron|CPPED1_uc002dbz.3_RNA	NM_018340	NP_060810	Q9BRF8	CPPED_HUMAN	calcineurin-like phosphoesterase domain	133							hydrolase activity|metal ion binding				0						GCCGTGGGGGTGTTGCCAATG	0.627												
MKL2	57496	broad.mit.edu	37	16	14354893	14354893	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:14354893A>G	uc010uza.1	+	17	3047	c.2892A>G	c.(2890-2892)CCA>CCG	p.P964P	MKL2_uc002dcg.2_Silent_p.P914P|MKL2_uc002dcj.2_Silent_p.P209P	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	953					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						AAATGGCACCACCTGTATCTT	0.478												
NTAN1	123803	broad.mit.edu	37	16	15132496	15132496	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:15132496A>G	uc002ddd.2	-	9	693	c.688T>C	c.(688-690)TAC>CAC	p.Y230H	PDXDC1_uc002ddc.2_Intron|NTAN1_uc010uzo.1_Missense_Mutation_p.Y125H	NM_173474	NP_775745	Q96AB6	NTAN1_HUMAN	N-terminal Asn amidase	230						cytoplasm					0						GTCCAGGAGTACGGTCCTATA	0.373												
RRN3	54700	broad.mit.edu	37	16	15155702	15155702	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:15155702C>T	uc002dde.2	-	18	1923	c.1855G>A	c.(1855-1857)GTG>ATG	p.V619M	PDXDC1_uc002ddc.2_Intron|RRN3_uc010uzp.1_Missense_Mutation_p.V487M|RRN3_uc010uzq.1_Missense_Mutation_p.V589M	NM_018427	NP_060897	Q9NYV6	RRN3_HUMAN	RRN3 RNA polymerase I transcription factor	619	Interaction with EIF3L.|Interaction with TWISTNB.				regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm				ovary(1)	1						ATCCCAATCACGGTATCATTC	0.493												
KIAA0430	9665	broad.mit.edu	37	16	15725274	15725274	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:15725274T>C	uc002ddr.2	-	6	1508	c.1315A>G	c.(1315-1317)ACA>GCA	p.T439A	KIAA0430_uc002ddq.2_Missense_Mutation_p.T438A|KIAA0430_uc010uzv.1_Missense_Mutation_p.T435A|KIAA0430_uc010uzw.1_Missense_Mutation_p.T438A	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	438						peroxisome	nucleotide binding|RNA binding				0						GCAGTGTGTGTATTTGCAAAT	0.423												
MYH11	4629	broad.mit.edu	37	16	15842010	15842010	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:15842010C>T	uc002ddy.2	-	17	2181	c.2074G>A	c.(2074-2076)GCG>ACG	p.A692T	MYH11_uc002ddv.2_Missense_Mutation_p.A699T|MYH11_uc002ddw.2_Missense_Mutation_p.A692T|MYH11_uc002ddx.2_Missense_Mutation_p.A699T|MYH11_uc010bvg.2_Missense_Mutation_p.A524T	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	692	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						ACCAGGAACGCATCCAGCTTG	0.617			T	CBFB	AML							
MYH11	4629	broad.mit.edu	37	16	15853509	15853509	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:15853509T>C	uc002ddy.2	-	12	1432	c.1325A>G	c.(1324-1326)AAA>AGA	p.K442R	MYH11_uc002ddv.2_Missense_Mutation_p.K449R|MYH11_uc002ddw.2_Missense_Mutation_p.K442R|MYH11_uc002ddx.2_Missense_Mutation_p.K449R|MYH11_uc010bvg.2_Missense_Mutation_p.K274R|MYH11_uc002dea.1_Missense_Mutation_p.K148R	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	442	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GTCCAGGGCTTTGTTCACGCG	0.552			T	CBFB	AML							
XYLT1	64131	broad.mit.edu	37	16	17211735	17211735	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:17211735T>A	uc002dfa.2	-	11	2410	c.2325A>T	c.(2323-2325)GGA>GGT	p.G775G		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	775	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						TCACATTAGGTCCCTTCCCCC	0.562												
XYLT1	64131	broad.mit.edu	37	16	17292097	17292097	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:17292097T>C	uc002dfa.2	-	5	1346	c.1261A>G	c.(1261-1263)AAC>GAC	p.N421D		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	421	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						GCACTCAGGTTGATGAAGAAG	0.617												
SMG1	23049	broad.mit.edu	37	16	18859270	18859270	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:18859270A>G	uc002dfm.2	-	37	6072	c.5709T>C	c.(5707-5709)AGT>AGC	p.S1903S	SMG1_uc010bwb.2_Silent_p.S1763S|SMG1_uc010bwa.2_Silent_p.S634S|SMG1_uc002dfo.3_Silent_p.S201S	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	1903	Interaction with SMG8 and SMG9.				DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						ATGCAGGAGGACTTCCTCCCT	0.383												
SMG1	23049	broad.mit.edu	37	16	18863428	18863428	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:18863428A>G	uc002dfm.2	-	33	5376	c.5013T>C	c.(5011-5013)GGT>GGC	p.G1671G	SMG1_uc010bwb.2_Silent_p.G1531G|SMG1_uc010bwa.2_Silent_p.G402G|SMG1_uc002dfo.3_5'Flank	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	1671	FAT.|Interaction with SMG8 and SMG9.				DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						GTCCAAGAATACCATATATTC	0.448												
COQ7	10229	broad.mit.edu	37	16	19089418	19089418	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:19089418G>A	uc002dfr.2	+	6	652	c.592G>A	c.(592-594)GTC>ATC	p.V198I	COQ7_uc002dfs.2_Missense_Mutation_p.V184I	NM_016138	NP_057222	Q99807	COQ7_HUMAN	COQ7 protein	198	2.|2 X approximate tandem repeats.				ubiquinone biosynthetic process	mitochondrial inner membrane|nucleus	oxidoreductase activity|transition metal ion binding			skin(1)	1						AGCCTATGCCGTCCTGAAGAG	0.423												
C16orf62	57020	broad.mit.edu	37	16	19613036	19613036	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:19613036G>A	uc002dgn.1	+	9	787	c.775G>A	c.(775-777)GTC>ATC	p.V259I	C16orf62_uc002dgo.1_Missense_Mutation_p.V259I|C16orf62_uc002dgp.1_Missense_Mutation_p.V8I|C16orf62_uc010vas.1_Missense_Mutation_p.V133I|C16orf62_uc002dgm.1_Missense_Mutation_p.V259I	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	259						integral to membrane				ovary(1)	1						TAGCCGCAGCGTCTTACCAGG	0.483											OREG0023661	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
GPRC5B	51704	broad.mit.edu	37	16	19884072	19884072	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:19884072G>A	uc002dgt.2	-	2	204	c.96C>T	c.(94-96)AGC>AGT	p.S32S	GPRC5B_uc010vav.1_Silent_p.S58S	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	32	Extracellular (Potential).									lung(1)|breast(1)|skin(1)	3						CTCGGGATGTGCTGGCGTTTT	0.617												
GP2	2813	broad.mit.edu	37	16	20325983	20325983	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:20325983A>G	uc002dgv.2	-	11	1634	c.1551T>C	c.(1549-1551)ACT>ACC	p.T517T	GP2_uc002dgw.2_Silent_p.T514T|GP2_uc002dgx.2_Silent_p.T370T|GP2_uc002dgy.2_Silent_p.T367T	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	517						anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						ATGTACCTGCAGTGCTAGGGG	0.408												
DNAH3	55567	broad.mit.edu	37	16	20946788	20946788	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:20946788G>T	uc010vbe.1	-	61	11879	c.11879C>A	c.(11878-11880)CCC>CAC	p.P3960H	DNAH3_uc010vbd.1_Missense_Mutation_p.P1395H	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3960					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TACCACAGGGGGCCCCTTGTC	0.418												
DNAH3	55567	broad.mit.edu	37	16	20966223	20966223	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:20966223A>G	uc010vbe.1	-	55	10983	c.10983T>C	c.(10981-10983)TGT>TGC	p.C3661C	DNAH3_uc010vbd.1_Silent_p.C1096C	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3661	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCGCCTTTGCACAGCTTTGGA	0.512												
DNAH3	55567	broad.mit.edu	37	16	21117982	21117982	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:21117982A>G	uc010vbe.1	-	15	2113	c.2113T>C	c.(2113-2115)TAC>CAC	p.Y705H	DNAH3_uc002die.2_Missense_Mutation_p.Y645H	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	705	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATGTGGCTGTACTGATTACAA	0.348												
ZP2	7783	broad.mit.edu	37	16	21209140	21209140	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:21209140C>A	uc002dii.2	-	18	2042	c.2042G>T	c.(2041-2043)GGG>GTG	p.G681V	ZP2_uc010bwn.1_Missense_Mutation_p.G711V	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	681	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		CCCACTGCTCCCACTTGCTTT	0.478												
CRYM	1428	broad.mit.edu	37	16	21288787	21288787	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:21288787G>T	uc002dik.2	-	2	374	c.289C>A	c.(289-291)CTA>ATA	p.L97I	CRYM_uc010bwq.1_RNA|CRYM_uc002dil.2_Missense_Mutation_p.L55I|CRYM_uc002dim.2_Missense_Mutation_p.L97I	NM_001888	NP_001879	Q14894	CRYM_HUMAN	crystallin, mu isoform 1	97					negative regulation of transcription from RNA polymerase II promoter|sensory perception of sound|thyroid hormone transport	cytoplasm|nucleus|plasma membrane	NADP binding|protein homodimerization activity|thyroid hormone binding|transcription corepressor activity				0				GBM - Glioblastoma multiforme(48;0.0573)	Levothyroxine(DB00451)	TCAAAGAGTAGCACAGTAGCC	0.602												
IGSF6	10261	broad.mit.edu	37	16	21654458	21654458	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:21654458A>G	uc002djg.1	-	5	656	c.603T>C	c.(601-603)CGT>CGC	p.R201R	uc002diq.3_Intron|METTL9_uc002dje.2_Intron|METTL9_uc002djf.2_Intron	NM_005849	NP_005840	O95976	IGSF6_HUMAN	immunoglobulin superfamily, member 6 precursor	201	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0				GBM - Glioblastoma multiforme(48;0.066)		CCTGAAAAATACGCCGAGCAC	0.328												
POLR3E	55718	broad.mit.edu	37	16	22328320	22328320	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:22328320T>C	uc002dkk.2	+	11	889	c.733T>C	c.(733-735)TAC>CAC	p.Y245H	POLR3E_uc002dkj.1_Missense_Mutation_p.Y245H|POLR3E_uc002dkm.2_Missense_Mutation_p.Y209H|POLR3E_uc010vbr.1_Missense_Mutation_p.Y245H|POLR3E_uc002dkl.2_Missense_Mutation_p.Y245H|POLR3E_uc010vbs.1_Missense_Mutation_p.Y209H|POLR3E_uc010vbt.1_Missense_Mutation_p.Y189H	NM_018119	NP_060589	Q9NVU0	RPC5_HUMAN	RNA polymerase III polypeptide E	245					innate immune response|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA-directed RNA polymerase activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.012)		CTGCAGTGAGTACCTGATGAT	0.642												
EARS2	124454	broad.mit.edu	37	16	23540844	23540844	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:23540844A>G	uc002dlt.3	-	7	1363	c.1331T>C	c.(1330-1332)GTG>GCG	p.V444A	EARS2_uc002dlr.3_RNA|EARS2_uc002dls.3_RNA|EARS2_uc002dlu.2_Missense_Mutation_p.V444A	NM_001083614	NP_001077083	Q5JPH6	SYEM_HUMAN	glutamyl-tRNA synthetase 2 precursor	444					glutamyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|glutamate-tRNA ligase activity|RNA binding				0				GBM - Glioblastoma multiforme(48;0.0353)	L-Glutamic Acid(DB00142)	CTTGGCAATCACATCCACCTT	0.602												
PALB2	79728	broad.mit.edu	37	16	23632760	23632760	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:23632760A>G	uc002dlx.1	-	10	3236	c.3036T>C	c.(3034-3036)ACT>ACC	p.T1012T		NM_024675	NP_078951	Q86YC2	PALB2_HUMAN	partner and localizer of BRCA2	1012	Interaction with RAD51 and BRCA2.|WD 4.				double-strand break repair via homologous recombination	nucleoplasm	DNA binding|protein binding			lung(3)|breast(3)|ovary(2)|skin(1)|kidney(1)|pancreas(1)	11				GBM - Glioblastoma multiforme(48;0.0167)		AAGTTAGTATAGTCTCCTCAG	0.343			F|N|Mis			Wilms tumor|medulloblastoma|AML ,breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia_type_N|Fanconi_Anemia|PALB2-associated_Familial_Breast_and_Pancreatic_Cancer|Pancreatic_Cancer_Familial_Clustering_of			
PALB2	79728	broad.mit.edu	37	16	23641278	23641278	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:23641278T>C	uc002dlx.1	-	5	2397	c.2197A>G	c.(2197-2199)ACT>GCT	p.T733A		NM_024675	NP_078951	Q86YC2	PALB2_HUMAN	partner and localizer of BRCA2	733					double-strand break repair via homologous recombination	nucleoplasm	DNA binding|protein binding			lung(3)|breast(3)|ovary(2)|skin(1)|kidney(1)|pancreas(1)	11				GBM - Glioblastoma multiforme(48;0.0167)		GCTGGAGTAGTACCTAAGATG	0.453			F|N|Mis			Wilms tumor|medulloblastoma|AML ,breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia_type_N|Fanconi_Anemia|PALB2-associated_Familial_Breast_and_Pancreatic_Cancer|Pancreatic_Cancer_Familial_Clustering_of			
PLK1	5347	broad.mit.edu	37	16	23700987	23700987	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:23700987A>G	uc002dlz.1	+	9	1651	c.1598A>G	c.(1597-1599)AAC>AGC	p.N533S		NM_005030	NP_005021	P53350	PLK1_HUMAN	polo-like kinase 1	533	POLO box 2.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|G2/M transition DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic prophase|negative regulation of cyclin-dependent protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|protein localization to chromatin|protein ubiquitination|regulation of mitotic anaphase|regulation of protein binding	centrosome|condensed nuclear chromosome outer kinetochore|cytosol|nucleoplasm|spindle microtubule|spindle midzone|spindle pole	anaphase-promoting complex binding|ATP binding|polo kinase kinase activity|protein kinase binding			lung(1)|skin(1)	2				GBM - Glioblastoma multiforme(48;0.0156)		GTGCAGATCAACTTCTTCCAG	0.642												
ERN2	10595	broad.mit.edu	37	16	23712303	23712303	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:23712303A>G	uc002dma.3	-	12	1649	c.1480T>C	c.(1480-1482)TGG>CGG	p.W494R	ERN2_uc010bxp.2_Intron|ERN2_uc010bxq.1_Missense_Mutation_p.W302R	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	446	Helical; (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		AAGAGAATCCACCCTCCCAGG	0.577												
RBBP6	5930	broad.mit.edu	37	16	24581291	24581291	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:24581291A>G	uc002dmh.2	+	17	4320	c.3280A>G	c.(3280-3282)AAA>GAA	p.K1094E	RBBP6_uc010vcb.1_Missense_Mutation_p.K961E|RBBP6_uc002dmi.2_Missense_Mutation_p.K1060E|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.K927E	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1094	Interaction with RB1 (By similarity).				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		AGCTCACTCTAAATCAGCAAA	0.383												
NSMCE1	197370	broad.mit.edu	37	16	27246576	27246576	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:27246576T>C	uc002doi.1	-	3	279	c.181A>G	c.(181-183)AAC>GAC	p.N61D	NSMCE1_uc002doj.1_RNA	NM_145080	NP_659547	Q8WV22	NSE1_HUMAN	non-SMC element 1 homolog	61					DNA recombination|DNA repair|intracellular signal transduction	nucleus	zinc ion binding				0						AAGACACTGTTAATGTTGTTG	0.468											OREG0023693	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
IL4R	3566	broad.mit.edu	37	16	27374428	27374428	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:27374428T>C	uc002don.2	+	11	1997	c.1755T>C	c.(1753-1755)GGT>GGC	p.G585G	IL4R_uc002dop.3_Silent_p.G570G|IL4R_uc010bxy.2_Silent_p.G585G|IL4R_uc002doo.2_Silent_p.G425G	NM_000418	NP_000409	P24394	IL4RA_HUMAN	interleukin 4 receptor alpha chain isoform a	585	Required for IL4-induced gene expression.|Cytoplasmic (Potential).				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			ovary(1)|skin(1)	2						TGGAGCAGGGTGGCACCCAGG	0.642												
GTF3C1	2975	broad.mit.edu	37	16	27500487	27500487	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:27500487C>A	uc002dov.1	-	21	3346	c.3306G>T	c.(3304-3306)GAG>GAT	p.E1102D	GTF3C1_uc002dou.2_Missense_Mutation_p.E1102D	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1102						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						CATCCACCACCTCACGGCTTC	0.527												
KIAA0556	23247	broad.mit.edu	37	16	27761462	27761462	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:27761462A>G	uc002dow.2	+	16	3205	c.3181A>G	c.(3181-3183)ACC>GCC	p.T1061A		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	1061										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						CCACTCCATCACCATTGACTT	0.557												
CLN3	1201	broad.mit.edu	37	16	28503056	28503056	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:28503056G>A	uc002dpo.2	-	1	348	c.25C>T	c.(25-27)CGG>TGG	p.R9W	uc010vct.1_Intron|CLN3_uc002dpl.2_5'UTR|CLN3_uc010vcu.1_5'UTR|CLN3_uc002dpn.2_Missense_Mutation_p.R9W|CLN3_uc002dpm.2_5'UTR|CLN3_uc010vcv.1_Missense_Mutation_p.R9W|CLN3_uc010byd.2_Missense_Mutation_p.R9W|CLN3_uc002dpp.2_Missense_Mutation_p.R9W|CLN3_uc002dpt.1_5'UTR|CLN3_uc002dpq.1_Missense_Mutation_p.R9W|CLN3_uc010bye.1_Missense_Mutation_p.R9W|CLN3_uc002dpr.1_RNA|CLN3_uc010byf.1_RNA|CLN3_uc002dps.1_Silent_p.G10G|CLN3_uc002dpu.1_5'UTR|CLN3_uc002dpw.1_5'UTR|CLN3_uc010vcw.1_5'UTR|CLN3_uc002dqa.2_Missense_Mutation_p.R9W|CLN3_uc010vcx.1_5'UTR|CLN3_uc002dpx.1_Missense_Mutation_p.R9W|CLN3_uc002dpy.1_Silent_p.G10G|CLN3_uc002dpz.1_RNA|APOB48R_uc002dqb.1_5'Flank|APOB48R_uc010byg.1_5'Flank	NM_000086	NP_000077	Q13286	CLN3_HUMAN	ceroid-lipofuscinosis, neuronal 3	9					amyloid precursor protein catabolic process|arginine transport|associative learning|autophagic vacuole fusion|cell death|cellular amino acid metabolic process|cytosolic calcium ion homeostasis|galactosylceramide metabolic process|globoside metabolic process|glucosylceramide metabolic process|ionotropic glutamate receptor signaling pathway|lysosomal lumen acidification|lysosomal lumen pH elevation|negative regulation of catalytic activity|negative regulation of macroautophagy|negative regulation of neuron apoptosis|negative regulation of proteolysis|neuromuscular process controlling balance|neurotransmitter metabolic process|protein catabolic process|protein folding|protein processing|receptor-mediated endocytosis|regulation of action potential|sphingomyelin metabolic process|vacuolar transport	autophagic vacuole|caveola|cytosol|early endosome|Golgi membrane|Golgi stack|integral to endoplasmic reticulum membrane|late endosome|lysosomal membrane|membrane fraction|mitochondrion|neuron projection|nucleus|synaptic vesicle|trans-Golgi network	unfolded protein binding				0						GAAAAGCGCCGCCGCGAGCCT	0.642											OREG0023706	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
SULT1A2	6799	broad.mit.edu	37	16	28603680	28603680	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:28603680T>C	uc002dqg.1	-	7	1030	c.679A>G	c.(679-681)ACG>GCG	p.T227A	uc010vct.1_Intron|SULT1A2_uc002dqh.1_Missense_Mutation_p.T227A	NM_177528	NP_803564	P50226	ST1A2_HUMAN	sulfotransferase family, cytosolic, 1A,	227	PAPS (By similarity).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine biosynthetic process|catecholamine metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						TTGAACGACGTGTGCTCAACC	0.552												
C16orf53	79447	broad.mit.edu	37	16	29831039	29831039	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:29831039C>T	uc002dug.3	+	3	1048	c.729C>T	c.(727-729)TCC>TCT	p.S243S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|uc002duh.1_Intron|MVP_uc010bzh.1_5'Flank|MVP_uc010vdz.1_5'Flank|MVP_uc002dui.2_5'Flank|MVP_uc002duj.2_5'Flank	NM_024516	NP_078792	Q9BTK6	PA1_HUMAN	PTIP-associated 1 protein	243											0						TCCGATCCTCCGGGAGTAGTC	0.642												
MVP	9961	broad.mit.edu	37	16	29848270	29848270	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:29848270C>T	uc002dui.2	+	7	984	c.900C>T	c.(898-900)CGC>CGT	p.R300R	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010bzh.1_RNA|MVP_uc010vdz.1_RNA|MVP_uc002duj.2_Silent_p.R300R|MVP_uc010vea.1_5'UTR	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	300	MVP 6.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						GGCAGAAGCGCGTGGTCAAGG	0.617												
MVP	9961	broad.mit.edu	37	16	29853294	29853294	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:29853294T>C	uc002dui.2	+	10	1579	c.1495T>C	c.(1495-1497)TCC>CCC	p.S499P	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010vdz.1_RNA|MVP_uc002duj.2_Missense_Mutation_p.S499P|MVP_uc010vea.1_Missense_Mutation_p.S93P	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	499	MVP 9.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						CACAGTGTTGTCCCTCTCAGC	0.647												
SEZ6L2	26470	broad.mit.edu	37	16	29884676	29884676	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:29884676C>T	uc002duq.3	-	14	2613	c.2373G>A	c.(2371-2373)GCG>GCA	p.A791A	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Silent_p.A721A|SEZ6L2_uc002dur.3_Silent_p.A721A|SEZ6L2_uc002dus.3_Silent_p.A677A|SEZ6L2_uc010vec.1_Silent_p.A791A|SEZ6L2_uc010ved.1_Silent_p.A747A	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	791	Sushi 5.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GAGACTCGCCCGCCTGGTAGT	0.627												
TAOK2	9344	broad.mit.edu	37	16	29999006	29999006	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:29999006G>A	uc002dva.1	+	16	4196	c.3413G>A	c.(3412-3414)CGC>CAC	p.R1138H	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Missense_Mutation_p.R1145H|TAOK2_uc002dvd.1_Missense_Mutation_p.R965H	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	1138					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						CGTAATCCCCGCACCACCCAA	0.652												
TBX6	6911	broad.mit.edu	37	16	30100530	30100530	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:30100530G>A	uc010veh.1	-	4	415	c.355C>T	c.(355-357)CGC>TGC	p.R119C	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TBX6_uc002dwk.1_Missense_Mutation_p.R119C	NM_004608	NP_004599	O95947	TBX6_HUMAN	T-box 6	119	T-box.				anatomical structure morphogenesis|mesoderm development|multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						GGGAACATGCGCCTGTGCAAG	0.642												
CORO1A	11151	broad.mit.edu	37	16	30199327	30199327	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:30199327T>C	uc002dww.2	+	8	1048	c.926T>C	c.(925-927)ATG>ACG	p.M309T	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|CORO1A_uc010bzq.2_Missense_Mutation_p.M309T|CORO1A_uc010bzr.2_Missense_Mutation_p.M309T|CORO1A_uc002dwx.2_Missense_Mutation_p.M203T|CORO1A_uc002dwy.1_3'UTR|LOC606724_uc002dwz.1_5'Flank	NM_007074	NP_009005	P31146	COR1A_HUMAN	coronin, actin binding protein, 1A	309	WD 7.				cell-substrate adhesion|innate immune response|leukocyte chemotaxis|negative regulation of actin nucleation|phagolysosome assembly|positive chemotaxis|regulation of cell shape|uropod organization	actin filament|cortical actin cytoskeleton|lamellipodium|phagocytic cup|phagocytic vesicle membrane	actin filament binding|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein homodimerization activity				0						TATCTCTCCATGTTCAGTTCC	0.582												
SEPHS2	22928	broad.mit.edu	37	16	30455783	30455783	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:30455783A>G	uc010ves.1	-	2	1442	c.1266T>C	c.(1264-1266)GTT>GTC	p.V422V	SEPHS2_uc002dyh.1_Silent_p.V365V|SEPHS2_uc010vet.1_Silent_p.V304V	NM_012248	NP_036380	Q99611	SPS2_HUMAN	selenophosphate synthetase 2	422					selenocysteine biosynthetic process		ATP binding|selenide, water dikinase activity			breast(2)	2						GGACTTCAATAACTCGCGGCT	0.522												
ITGAL	3683	broad.mit.edu	37	16	30507448	30507448	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:30507448G>T	uc002dyi.3	+	14	1710	c.1534G>T	c.(1534-1536)GGG>TGG	p.G512W	ITGAL_uc002dyj.3_Missense_Mutation_p.G429W|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	512	FG-GAP 6.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	AGAGCTGCAGGGGGACCCCGG	0.572												
SRCAP	10847	broad.mit.edu	37	16	30723629	30723629	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:30723629A>G	uc002dze.1	+	13	2247	c.1862A>G	c.(1861-1863)TAC>TGC	p.Y621C	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.Y478C|SRCAP_uc010bzz.1_Missense_Mutation_p.Y191C	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	621					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CTCCGGGAGTACCAGCACATT	0.512												
SRCAP	10847	broad.mit.edu	37	16	30734392	30734392	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:30734392C>T	uc002dze.1	+	24	4386	c.4001C>T	c.(4000-4002)CCG>CTG	p.P1334L	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P1129L|SRCAP_uc010bzz.1_Missense_Mutation_p.P904L	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1334	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CCCCGGCCTCCGAGCTCTGGG	0.602												
STX1B	112755	broad.mit.edu	37	16	31012272	31012272	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:31012272T>G	uc010cad.2	-	4	369	c.257A>C	c.(256-258)AAC>ACC	p.N86T	STX1B_uc010vfd.1_Missense_Mutation_p.N86T	NM_052874	NP_443106	P61266	STX1B_HUMAN	syntaxin 1B	86	Potential.|Cytoplasmic (Potential).				intracellular protein transport|neurotransmitter transport|synaptic transmission	integral to plasma membrane	extracellular-glutamate-gated ion channel activity|SNAP receptor activity				0						CCGAACCTTGTTGGCCGTCTT	0.517												
ZNF668	79759	broad.mit.edu	37	16	31073349	31073349	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:31073349G>A	uc010caf.2	-	3	1257	c.900C>T	c.(898-900)CGC>CGT	p.R300R	ZNF668_uc002eao.2_Silent_p.R300R	NM_024706	NP_078982	Q96K58	ZN668_HUMAN	zinc finger protein 668	300	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(4)	4						CTTCATGGGCGCGCTGGTGGC	0.692												
FUS	2521	broad.mit.edu	37	16	31202336	31202336	+	Silent	SNP	C	C	T	rs112061837		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:31202336C>T	uc002ebf.2	+	14	1529	c.1446C>T	c.(1444-1446)GGC>GGT	p.G482G	FUS_uc002ebh.2_Silent_p.G481G|FUS_uc002ebg.2_Silent_p.G277G|FUS_uc002ebi.2_Silent_p.G483G|FUS_uc002ebj.2_Silent_p.G278G	NM_004960	NP_004951	P35637	FUS_HUMAN	fusion (involved in t(12;16) in malignant	482	Arg/Gly-rich.				cell death|nuclear mRNA splicing, via spliceosome	nucleoplasm	DNA binding|nucleotide binding|protein binding|RNA binding|zinc ion binding		FUS/DDIT3(623)|FUS/ERG(163)|FUS/CREB3L2(158)|FUS/CREB3L1(6)|FUS/ATF1(4)|FUS/FEV(2)	soft_tissue(791)|haematopoietic_and_lymphoid_tissue(153)|bone(12)|breast(2)	958		Renal(780;0.000219)|Breast(268;0.00957)|Hepatocellular(780;0.121)		GBM - Glioblastoma multiforme(240;2.31e-05)|Kidney(780;0.000209)		ATGATCGAGGCGGCTACCGGG	0.602			T	DDIT3|ERG|FEV|ATF1|CREB3L2|CREB3L1	liposarcoma|AML|Ewing sarcoma|angiomatoid fibrous histiocytoma|fibromyxoid sarcoma							
PYDC1	260434	broad.mit.edu	37	16	31228272	31228272	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:31228272C>T	uc002ebo.2	-	1	127	c.78G>A	c.(76-78)AAG>AAA	p.K26K	TRIM72_uc002ebn.1_Intron	NM_152901	NP_690865	Q8WXC3	PYDC1_HUMAN	pyrin domain containing 1	26	DAPIN.				innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein kinase activity|positive regulation of interleukin-1 beta secretion|proteolysis|tumor necrosis factor-mediated signaling pathway	IkappaB kinase complex|nucleus	cysteine-type endopeptidase activity|protein binding				0						CCGTCCCCAGCTTCATCTTGA	0.647												
ITGAM	3684	broad.mit.edu	37	16	31288050	31288050	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:31288050C>T	uc002ebq.2	+	10	1166	c.1068C>T	c.(1066-1068)AGC>AGT	p.S356S	ITGAM_uc002ebr.2_Silent_p.S356S|ITGAM_uc010cam.1_Silent_p.S7S	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	356	FG-GAP 3.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						AAGGCTTCAGCGCTGCCATCA	0.488												
ITGAD	3681	broad.mit.edu	37	16	31422138	31422138	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:31422138C>T	uc002ebv.1	+	12	1344	c.1295C>T	c.(1294-1296)GCT>GTT	p.A432V	ITGAD_uc010cap.1_Missense_Mutation_p.A432V	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	432	FG-GAP 4.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						ACCGGGAAGGCTGTCATCTTC	0.642												
TGFB1I1	7041	broad.mit.edu	37	16	31488739	31488739	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:31488739C>T	uc002ecd.1	+	11	1254	c.1228C>T	c.(1228-1230)CTC>TTC	p.L410F	TGFB1I1_uc002ece.1_Missense_Mutation_p.L393F|TGFB1I1_uc010caq.1_Missense_Mutation_p.L249F	NM_001042454	NP_001035919	O43294	TGFI1_HUMAN	transforming growth factor beta 1 induced	410	LIM zinc-binding 4.				androgen receptor signaling pathway|cell adhesion|negative regulation of cell proliferation|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|transcription from RNA polymerase II promoter|ubiquitin-dependent SMAD protein catabolic process|Wnt receptor signaling pathway	cytoplasm|cytoskeleton|focal adhesion|nuclear matrix	androgen receptor binding|I-SMAD binding|Roundabout binding|transcription coactivator activity|zinc ion binding				0						CACGTGTGGCCTCCCTGTGAC	0.692												
ABCC12	94160	broad.mit.edu	37	16	48174690	48174690	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:48174690G>A	uc002efc.1	-	4	911	c.565C>T	c.(565-567)CGC>TGC	p.R189C	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Missense_Mutation_p.R189C|ABCC12_uc010vgj.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	189	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				ATGGCCGTGCGGTAGTTGATG	0.527												
N4BP1	9683	broad.mit.edu	37	16	48576961	48576961	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:48576961T>C	uc002efp.2	-	7	2782	c.2545A>G	c.(2545-2547)AGA>GGA	p.R849G		NM_153029	NP_694574	O75113	N4BP1_HUMAN	Nedd4 binding protein 1	849					negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination	nucleolus|PML body					0		all_cancers(37;0.179)|all_lung(18;0.11)				GCAGAAGATCTCTGAGCTGGC	0.582												
N4BP1	9683	broad.mit.edu	37	16	48580154	48580154	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:48580154T>C	uc002efp.2	-	6	2474	c.2237A>G	c.(2236-2238)TAC>TGC	p.Y746C		NM_153029	NP_694574	O75113	N4BP1_HUMAN	Nedd4 binding protein 1	746					negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination	nucleolus|PML body					0		all_cancers(37;0.179)|all_lung(18;0.11)				CACGAACGTGTACTGCAGCAG	0.522												
N4BP1	9683	broad.mit.edu	37	16	48596113	48596113	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:48596113T>C	uc002efp.2	-	2	678	c.441A>G	c.(439-441)CTA>CTG	p.L147L		NM_153029	NP_694574	O75113	N4BP1_HUMAN	Nedd4 binding protein 1	147					negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination	nucleolus|PML body					0		all_cancers(37;0.179)|all_lung(18;0.11)				GACTACTGGGTAGGTTCTCTT	0.408												
CBLN1	869	broad.mit.edu	37	16	49313496	49313496	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:49313496T>C	uc002efq.2	-	3	740	c.401A>G	c.(400-402)AAC>AGC	p.N134S		NM_004352	NP_004343	P23435	CBLN1_HUMAN	cerebellin 1 precursor	134	C1q.|Necessary for interaction with CBLN3, and homotrimerization (By similarity).				nervous system development|synaptic transmission	cell junction|extracellular region|synapse					0		all_cancers(37;0.0766)|all_lung(18;0.24)				CGGCCACCCGTTTAGCATGAG	0.617												
C16orf78	123970	broad.mit.edu	37	16	49430466	49430466	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:49430466A>G	uc002efr.2	+	4	570	c.527A>G	c.(526-528)GAC>GGC	p.D176G		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	176										central_nervous_system(1)	1						TTCATAAGAGACTGGTCCAAC	0.488												
HEATR3	55027	broad.mit.edu	37	16	50112751	50112751	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:50112751C>T	uc002efw.2	+	7	1025	c.863C>T	c.(862-864)GCT>GTT	p.A288V	HEATR3_uc002efx.2_Missense_Mutation_p.A202V	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	288							binding			ovary(1)|skin(1)	2						GGAATGGATGCTGGTGAAATG	0.378												
PAPD5	64282	broad.mit.edu	37	16	50263114	50263114	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:50263114A>G	uc010vgo.1	+	13	2007	c.1972A>G	c.(1972-1974)ACT>GCT	p.T658A	PAPD5_uc010cbi.2_Intron|PAPD5_uc002efz.2_Missense_Mutation_p.T402A|PAPD5_uc002ega.2_Missense_Mutation_p.T449A	NM_001040284	NP_001035374	Q8NDF8	PAPD5_HUMAN	PAP associated domain containing 5 isoform a	532					cell division|DNA replication|histone mRNA catabolic process|mitosis	cytoplasm|nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding				0		all_cancers(37;0.0452)		BRCA - Breast invasive adenocarcinoma(181;0.0843)|GBM - Glioblastoma multiforme(240;0.231)		CCAAGGTACAACTCAAACAAG	0.428												
ADCY7	113	broad.mit.edu	37	16	50347896	50347896	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:50347896G>A	uc002egd.1	+	22	3047	c.2779G>A	c.(2779-2781)GTG>ATG	p.V927M		NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	927	Cytoplasmic (Potential).|Guanylate cyclase 2.				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	GTTCAGCGGCGTGGAGAAGAT	0.607												
BRD7	29117	broad.mit.edu	37	16	50354660	50354660	+	Missense_Mutation	SNP	C	C	T	rs143187051	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:50354660C>T	uc002egf.1	-	15	1593	c.1526G>A	c.(1525-1527)CGT>CAT	p.R509H	BRD7_uc002ege.1_Missense_Mutation_p.R510H	NM_013263	NP_037395	Q9NPI1	BRD7_HUMAN	bromodomain containing 7	509					cell cycle|negative regulation of cell proliferation|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of histone acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleus	histone acetyl-lysine binding|p53 binding|transcription coactivator activity|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding				0		all_cancers(37;0.0127)				GGAGTCCAAACGCCCTGGTGG	0.443												
NKD1	85407	broad.mit.edu	37	16	50659415	50659415	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:50659415C>T	uc002egg.1	+	6	610	c.386C>T	c.(385-387)TCC>TTC	p.S129F		NM_033119	NP_149110	Q969G9	NKD1_HUMAN	naked cuticle homolog 1	129	Interaction with DVL1, DVL2 and DVL3 (By similarity).				Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding				0		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		TGCGACGTGTCCATGGAGGAG	0.612												
SNX20	124460	broad.mit.edu	37	16	50707743	50707743	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:50707743G>A	uc002egk.2	-	4	698	c.525C>T	c.(523-525)CGC>CGT	p.R175R	SNX20_uc010vgp.1_Intron|SNX20_uc002egi.3_Intron	NM_182854	NP_878274	Q7Z614	SNX20_HUMAN	sorting nexin 20 isoform 1	175	PX.				cell communication|protein transport	endosome membrane|nucleus|plasma membrane	phosphatidylinositol binding|protein binding			ovary(1)	1						CCCGGGAGCGGCGCACGCAGC	0.701												
CYLD	1540	broad.mit.edu	37	16	50783754	50783754	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:50783754T>C	uc002egp.1	+	4	560	c.145T>C	c.(145-147)TAT>CAT	p.Y49H	CYLD_uc002egn.1_Missense_Mutation_p.Y49H|CYLD_uc002ego.2_Missense_Mutation_p.Y49H|CYLD_uc010cbs.1_Missense_Mutation_p.Y49H|CYLD_uc002egq.1_Missense_Mutation_p.Y49H|CYLD_uc002egr.1_Missense_Mutation_p.Y49H|CYLD_uc002egs.1_Missense_Mutation_p.Y49H	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	49					cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				TATAGGACAGTATATTCAAGA	0.398			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial			
CYLD	1540	broad.mit.edu	37	16	50788337	50788337	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:50788337T>C	uc002egp.1	+	6	1328	c.913_splice	c.e6+2	p.A305_splice	CYLD_uc002egn.1_Splice_Site_p.E305_splice|CYLD_uc002ego.2_Splice_Site_p.E305_splice|CYLD_uc010cbs.1_Splice_Site_p.E305_splice|CYLD_uc002egq.1_Splice_Site_p.E305_splice|CYLD_uc002egr.1_Splice_Site_p.E305_splice|CYLD_uc002egs.1_Splice_Site_p.E305_splice	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD						cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				TCATCCCAGGTATGTTTTCTT	0.244			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial			
SALL1	6299	broad.mit.edu	37	16	51173803	51173803	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:51173803T>C	uc010vgs.1	-	2	2361	c.2330A>G	c.(2329-2331)AAC>AGC	p.N777S	SALL1_uc010vgr.1_Missense_Mutation_p.N680S|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	777	C2H2-type 5.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GACCACAGCGTTCGTGAACTT	0.557												
SALL1	6299	broad.mit.edu	37	16	51174322	51174322	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:51174322T>C	uc010vgs.1	-	2	1842	c.1811A>G	c.(1810-1812)AAC>AGC	p.N604S	SALL1_uc010vgr.1_Missense_Mutation_p.N507S|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	604					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CCCACCTAGGTTTCTTGTGGC	0.622												
CHD9	80205	broad.mit.edu	37	16	53190246	53190246	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:53190246T>C	uc002ehb.2	+	1	409	c.245T>C	c.(244-246)GTT>GCT	p.V82A	CHD9_uc002egy.2_Missense_Mutation_p.V82A|CHD9_uc002egz.1_Missense_Mutation_p.V82A|CHD9_uc002eha.1_Missense_Mutation_p.V82A|CHD9_uc002ehc.2_Missense_Mutation_p.V82A	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	82					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				TTTCACCATGTTAATCAATCT	0.363												
RPGRIP1L	23322	broad.mit.edu	37	16	53730184	53730184	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:53730184T>C	uc002ehp.2	-	3	173	c.109A>G	c.(109-111)AAG>GAG	p.K37E	RPGRIP1L_uc002eho.3_Missense_Mutation_p.K37E|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.K37E|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.K37E|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.K37E|RPGRIP1L_uc002ehq.1_Missense_Mutation_p.K37E|RPGRIP1L_uc010cby.1_Missense_Mutation_p.K37E	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	37					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				TGGCGAGACTTCATTGTCCGT	0.383												
IRX5	10265	broad.mit.edu	37	16	54965177	54965177	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:54965177T>C	uc002ehv.2	+	1	67	c.67T>C	c.(67-69)TAC>CAC	p.Y23H	uc010vhb.1_5'Flank|uc010vhc.1_5'Flank|uc002ehu.1_5'Flank|IRX5_uc010cca.1_Missense_Mutation_p.Y23H|IRX5_uc002ehw.2_5'Flank	NM_005853	NP_005844	P78411	IRX5_HUMAN	iroquois homeobox protein 5	23					response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|vitamin D binding				0						GTGCCCGGCGTACAGCACCAG	0.612												
IRX5	10265	broad.mit.edu	37	16	54966639	54966639	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:54966639T>C	uc002ehv.2	+	2	479	c.479T>C	c.(478-480)GTG>GCG	p.V160A	IRX5_uc010cca.1_Missense_Mutation_p.V212A|IRX5_uc002ehw.2_Missense_Mutation_p.V94A	NM_005853	NP_005844	P78411	IRX5_HUMAN	iroquois homeobox protein 5	160	Homeobox; TALE-type.				response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|vitamin D binding				0						CTCACCCAGGTGTCCACCTGG	0.607												
IRX5	10265	broad.mit.edu	37	16	54967711	54967711	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:54967711T>C	uc002ehv.2	+	3	1378	c.1378T>C	c.(1378-1380)TTG>CTG	p.L460L	IRX5_uc002ehw.2_Silent_p.L394L	NM_005853	NP_005844	P78411	IRX5_HUMAN	iroquois homeobox protein 5	460					response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|vitamin D binding				0						CCCGAAAATGTTGCGGAGCCA	0.552												
BBS2	583	broad.mit.edu	37	16	56533690	56533690	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:56533690C>T	uc002ejd.2	-	12	1761	c.1527G>A	c.(1525-1527)AGG>AGA	p.R509R	BBS2_uc010ccg.2_3'UTR	NM_031885	NP_114091	Q9BXC9	BBS2_HUMAN	Bardet-Biedl syndrome 2 protein	509					adult behavior|brain morphogenesis|cerebral cortex development|cilium morphogenesis|fat cell differentiation|hippocampus development|melanosome transport|negative regulation of multicellular organism growth|photoreceptor cell maintenance|protein localization to organelle|regulation of cilium beat frequency involved in ciliary motility|sperm axoneme assembly|striatum development	BBSome|cilium membrane|microtubule basal body|motile cilium	protein binding			ovary(1)	1						AGATACTCACCCTCTGTGCCC	0.418									Bardet-Biedl_syndrome			
NLRC5	84166	broad.mit.edu	37	16	57059448	57059448	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:57059448A>G	uc002ekk.1	+	6	818	c.593A>G	c.(592-594)GAC>GGC	p.D198G	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Missense_Mutation_p.D3G|NLRC5_uc002ekl.2_Missense_Mutation_p.D3G|NLRC5_uc002ekm.2_Missense_Mutation_p.D3G|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	198					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				ATTATGGGGGACGTCAAGGTG	0.622												
C16orf57	79650	broad.mit.edu	37	16	58036471	58036471	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:58036471G>A	uc002emz.2	+	2	270	c.187G>A	c.(187-189)GAC>AAC	p.D63N	ZNF319_uc002emx.1_5'Flank|C16orf57_uc010via.1_Missense_Mutation_p.D63N|C16orf57_uc002emy.2_RNA|C16orf57_uc010vib.1_Missense_Mutation_p.D63N|C16orf57_uc010vic.1_Missense_Mutation_p.D12N	NM_024598	NP_078874	Q9BQ65	CP057_HUMAN	hypothetical protein LOC79650	63											0						GCCTGAAGATGACAGCACAAA	0.582												
PRSS54	221191	broad.mit.edu	37	16	58324986	58324986	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:58324986A>G	uc002enf.2	-	4	535	c.140T>C	c.(139-141)TTG>TCG	p.L47S	PRSS54_uc002eng.2_Missense_Mutation_p.L47S|PRSS54_uc010vie.1_Intron	NM_001080492	NP_001073961	Q6PEW0	PRS54_HUMAN	plasma kallikrein-like protein 4 precursor	47	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GCTGCTGACCAAGCCCTCCTT	0.627												
CNOT1	23019	broad.mit.edu	37	16	58555205	58555205	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:58555205A>G	uc002env.2	-	48	7227	c.6934T>C	c.(6934-6936)TTG>CTG	p.L2312L	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Silent_p.L2307L|CNOT1_uc002ent.2_Silent_p.L250L|CNOT1_uc010vik.1_Silent_p.L1269L	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	2312					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		TTTACAATCAACCGTTCCAAG	0.358												
CNOT1	23019	broad.mit.edu	37	16	58559097	58559097	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:58559097T>C	uc002env.2	-	46	7063	c.6770A>G	c.(6769-6771)GAC>GGC	p.D2257G	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.D2252G|CNOT1_uc002ent.2_Missense_Mutation_p.D195G|CNOT1_uc010vik.1_Missense_Mutation_p.D1214G	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	2257					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		AGTGTCCAAGTCCACAGCCAA	0.463												
CNOT1	23019	broad.mit.edu	37	16	58614646	58614646	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:58614646A>G	uc002env.2	-	12	1527	c.1234T>C	c.(1234-1236)TCC>CCC	p.S412P	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.S412P|CNOT1_uc002enx.2_Missense_Mutation_p.S412P|CNOT1_uc002enz.1_Intron	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	412					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		TTTATAAGGGAATGTTGAATG	0.373												
CDH16	1014	broad.mit.edu	37	16	66943186	66943186	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:66943186G>A	uc002eql.2	-	17	2449	c.2376C>T	c.(2374-2376)GGC>GGT	p.G792G	CDH16_uc010cdy.2_Silent_p.G770G|CDH16_uc002eqm.2_Silent_p.G695G	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	792	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		CTACCAGGGTGCCTACAAGGA	0.592												
PLEKHG4	25894	broad.mit.edu	37	16	67315670	67315670	+	Missense_Mutation	SNP	C	C	T	rs148286913		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:67315670C>T	uc002eso.3	+	6	3470	c.935C>T	c.(934-936)ACG>ATG	p.T312M	PLEKHG4_uc002esp.3_Missense_Mutation_p.T119M|PLEKHG4_uc002esq.3_Missense_Mutation_p.T312M|PLEKHG4_uc010cef.2_Missense_Mutation_p.T312M|PLEKHG4_uc002ess.3_Missense_Mutation_p.T312M|PLEKHG4_uc010ceg.2_Missense_Mutation_p.T231M	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	312					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		CACATCCCAACGGCGGGGCTG	0.642												
PLEKHG4	25894	broad.mit.edu	37	16	67320682	67320682	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:67320682C>T	uc002eso.3	+	16	5320	c.2785C>T	c.(2785-2787)CGA>TGA	p.R929*	PLEKHG4_uc002esp.3_Nonsense_Mutation_p.R736*|PLEKHG4_uc002esq.3_Nonsense_Mutation_p.R929*|PLEKHG4_uc010cef.2_Nonsense_Mutation_p.R929*|PLEKHG4_uc002ess.3_Nonsense_Mutation_p.R929*|PLEKHG4_uc010ceg.2_Nonsense_Mutation_p.R848*	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	929	PH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		GCAGCTGGTGCGACAGGATGA	0.612												
HSD11B2	3291	broad.mit.edu	37	16	67470813	67470813	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:67470813A>G	uc002etd.2	+	5	1241	c.1125A>G	c.(1123-1125)GCA>GCG	p.A375A		NM_000196	NP_000187	P80365	DHI2_HUMAN	hydroxysteroid (11-beta) dehydrogenase 2	375					glucocorticoid biosynthetic process	endoplasmic reticulum|microsome					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0401)|Epithelial(162;0.0891)	NADH(DB00157)	TGCCTCGAGCACTGCAGCCTG	0.647												
CTCF	10664	broad.mit.edu	37	16	67662300	67662300	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:67662300A>G	uc002etl.2	+	9	1836	c.1546A>G	c.(1546-1548)ACC>GCC	p.T516A	CTCF_uc010cek.2_Missense_Mutation_p.T188A|CTCF_uc002etm.1_Missense_Mutation_p.T5A	NM_006565	NP_006556	P49711	CTCF_HUMAN	CCCTC-binding factor	516	C2H2-type 9.				chromatin modification|chromosome segregation|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|regulation of centromeric sister chromatid cohesion|regulation of molecular function, epigenetic	chromosome, centromeric region|condensed chromosome|nucleolus|nucleoplasm	chromatin insulator sequence binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0166)|Epithelial(162;0.0577)		GCACAAGCGCACCCACACCGG	0.592												
RLTPR	146206	broad.mit.edu	37	16	67683765	67683765	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:67683765A>T	uc002etn.2	+	21	2096	c.1976A>T	c.(1975-1977)CAG>CTG	p.Q659L	RLTPR_uc010cel.1_Missense_Mutation_p.Q652L|RLTPR_uc010vjr.1_Missense_Mutation_p.Q623L	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	659	Tropomodulin-like.|LRR 15.									breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		GACGTGGCGCAGGCGCTGGAG	0.672												
RLTPR	146206	broad.mit.edu	37	16	67683871	67683871	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:67683871G>A	uc002etn.2	+	21	2202	c.2082G>A	c.(2080-2082)CAG>CAA	p.Q694Q	RLTPR_uc010cel.1_Silent_p.Q687Q|RLTPR_uc010vjr.1_Silent_p.Q658Q	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	694										breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		CAGTCCATCAGGTGGGCGTCC	0.622												
ACD	65057	broad.mit.edu	37	16	67694161	67694161	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:67694161T>C	uc002etq.3	-	1	558	c.221A>G	c.(220-222)AAC>AGC	p.N74S	ACD_uc002etp.3_Missense_Mutation_p.N74S|ACD_uc002etr.3_Missense_Mutation_p.N74S|ACD_uc010vjt.1_Missense_Mutation_p.N64S|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	74					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		CGGGCCCGGGTTTCCCGCGGG	0.716												
C16orf48	84080	broad.mit.edu	37	16	67697558	67697558	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:67697558A>G	uc002etw.1	-	5	1026	c.743_splice	c.e5+1	p.Y248_splice	ACD_uc002etp.3_5'Flank|ACD_uc002etq.3_5'Flank|ACD_uc002etr.3_5'Flank|ACD_uc010vjt.1_5'Flank|C16orf48_uc002etv.1_Splice_Site_p.Y130_splice|C16orf48_uc010cem.1_Intron	NM_032140	NP_115516	Q9H0I2	CP048_HUMAN	hypothetical protein LOC84080							microtubule cytoskeleton	protein binding				0		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		AGTGAGACCTACTAATGTGGC	0.597												
RANBP10	57610	broad.mit.edu	37	16	67763602	67763602	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:67763602A>G	uc002eud.2	-	9	1244	c.1128T>C	c.(1126-1128)AGT>AGC	p.S376S	RANBP10_uc010ceo.2_Silent_p.S147S|RANBP10_uc010vju.1_Silent_p.S320S|RANBP10_uc010vjv.1_Silent_p.S259S|RANBP10_uc010vjw.1_Silent_p.S37S	NM_020850	NP_065901	Q6VN20	RBP10_HUMAN	RAN binding protein 10	376	Ser-rich.									ovary(1)	1		Acute lymphoblastic leukemia(13;4.34e-06)|all_hematologic(13;0.000643)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00522)|Epithelial(162;0.025)|all cancers(182;0.157)		GCATGTGGGAACTACTGGGGC	0.622												
NUTF2	10204	broad.mit.edu	37	16	67902272	67902272	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:67902272A>G	uc002eup.2	+	3	228	c.129A>G	c.(127-129)GGA>GGG	p.G43G	NUTF2_uc010vkf.1_Silent_p.G43G|NUTF2_uc002euq.3_5'Flank	NM_005796	NP_005787	P61970	NTF2_HUMAN	nuclear transport factor 2	43	NTF2.				protein transport	cytosol|nuclear pore	protein binding|transporter activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00443)|Epithelial(162;0.0199)|all cancers(182;0.129)		CGTGGGAAGGACAACAGTTCC	0.537												
PSMB10	5699	broad.mit.edu	37	16	67968770	67968770	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:67968770C>A	uc002eux.1	-	7	741	c.640G>T	c.(640-642)GCA>TCA	p.A214S		NM_002801	NP_002792	P40306	PSB10_HUMAN	proteasome beta 10 subunit proprotein	214					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|humoral immune response|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00415)|Epithelial(162;0.0182)|all cancers(182;0.119)		ATCACACATGCGTCCACATTG	0.642												
SLC12A4	6560	broad.mit.edu	37	16	67991804	67991804	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:67991804A>G	uc002euz.2	-	4	627	c.486T>C	c.(484-486)TGT>TGC	p.C162C	SLC12A4_uc010ceu.2_Silent_p.C156C|SLC12A4_uc010vkh.1_Silent_p.C131C|SLC12A4_uc010vki.1_Silent_p.C162C|SLC12A4_uc010vkj.1_Silent_p.C164C|SLC12A4_uc002eva.2_Silent_p.C162C|SLC12A4_uc002evb.2_Intron|SLC12A4_uc010cew.1_Silent_p.C45C	NM_005072	NP_005063	Q9UP95	S12A4_HUMAN	solute carrier family 12, member 4 isoform a	162	Helical; (Potential).|Poly-Cys.				cell volume homeostasis|potassium ion transport|sodium ion transport	integral to plasma membrane|membrane fraction	potassium:chloride symporter activity			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	CACTCACACAACAGCAGCAGA	0.632												
DUS2L	54920	broad.mit.edu	37	16	68110607	68110607	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:68110607G>A	uc002evi.2	+	15	1304	c.1155G>A	c.(1153-1155)CAG>CAA	p.Q385Q	DUS2L_uc002evj.2_Silent_p.Q385Q|DUS2L_uc010vkk.1_Silent_p.Q350Q|DUS2L_uc010cez.2_Silent_p.Q298Q	NM_017803	NP_060273	Q9NX74	DUS2L_HUMAN	dihydrouridine synthase 2-like, SMM1 homolog	385	DRBM.				tRNA processing	endoplasmic reticulum	double-stranded RNA binding|flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0131)|Epithelial(162;0.0564)		AGTTGGCACAGCCTGTGTATG	0.582												
ESRP2	80004	broad.mit.edu	37	16	68266489	68266489	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:68266489T>C	uc010cfa.1	-	7	1030	c.842A>G	c.(841-843)AAC>AGC	p.N281S	ESRP2_uc002evp.1_RNA|ESRP2_uc002evq.1_Missense_Mutation_p.N271S	NM_024939	NP_079215	Q9H6T0	ESRP2_HUMAN	RNA binding motif protein 35B	281	RRM 1.				mRNA processing|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding|nucleotide binding			ovary(1)	1						CCTGGCCACGTTGAGCCCTTT	0.617												
PRMT7	54496	broad.mit.edu	37	16	68373316	68373316	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:68373316T>C	uc002evy.1	+	8	872	c.596T>C	c.(595-597)ATC>ACC	p.I199T	PRMT7_uc002evx.1_Missense_Mutation_p.I199T|PRMT7_uc010vlg.1_Missense_Mutation_p.I149T|PRMT7_uc002evz.1_Missense_Mutation_p.I45T	NM_019023	NP_061896	Q9NVM4	ANM7_HUMAN	protein arginine methyltransferase 7	199					cell differentiation|DNA methylation involved in gamete generation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	[myelin basic protein]-arginine N-methyltransferase activity|histone methyltransferase activity (H4-R3 specific)|protein-arginine omega-N monomethyltransferase activity|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0155)|Epithelial(162;0.0629)		CTATTTCCCATCCACGTGCAG	0.582												
PRMT7	54496	broad.mit.edu	37	16	68380154	68380154	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:68380154A>G	uc002evy.1	+	11	1438	c.1162A>G	c.(1162-1164)ACT>GCT	p.T388A	PRMT7_uc002evx.1_Missense_Mutation_p.T388A|PRMT7_uc010vlg.1_Missense_Mutation_p.T338A|PRMT7_uc002evz.1_Missense_Mutation_p.T234A	NM_019023	NP_061896	Q9NVM4	ANM7_HUMAN	protein arginine methyltransferase 7	388					cell differentiation|DNA methylation involved in gamete generation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	[myelin basic protein]-arginine N-methyltransferase activity|histone methyltransferase activity (H4-R3 specific)|protein-arginine omega-N monomethyltransferase activity|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0155)|Epithelial(162;0.0629)		CCAGGACAGAACTGATCGATA	0.557												
SMPD3	55512	broad.mit.edu	37	16	68405595	68405595	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:68405595G>A	uc002ewa.2	-	3	912	c.490C>T	c.(490-492)CGG>TGG	p.R164W	SMPD3_uc010cfe.2_Missense_Mutation_p.R164W|SMPD3_uc010vlh.1_Missense_Mutation_p.R164W	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	164	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	ATCTGGGGCCGGGCGGCCCCA	0.622												
CDH3	1001	broad.mit.edu	37	16	68719188	68719188	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:68719188A>G	uc002ewf.2	+	11	2637	c.1505A>G	c.(1504-1506)GAC>GGC	p.D502G	CDH3_uc010vli.1_Missense_Mutation_p.D447G	NM_001793	NP_001784	P22223	CADH3_HUMAN	cadherin 3, type 1 preproprotein	502	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion|response to stimulus|visual perception	integral to membrane	calcium ion binding	p.?(1)		ovary(3)|breast(1)|skin(1)	5		Ovarian(137;0.0564)		OV - Ovarian serous cystadenocarcinoma(108;0.000782)|Epithelial(162;0.0054)|all cancers(182;0.0384)		GGCACCCTCGACCGTGAGGAT	0.572												
TMCO7	79613	broad.mit.edu	37	16	68894021	68894021	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:68894021T>C	uc002ewi.3	+	2	341	c.329T>C	c.(328-330)ATC>ACC	p.I110T	TMCO7_uc002ewh.2_Missense_Mutation_p.I110T	NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	110						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		GAAACCATGATCCGCCTTGCA	0.473												
TMCO7	79613	broad.mit.edu	37	16	68894252	68894252	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:68894252C>T	uc002ewi.3	+	2	572	c.560C>T	c.(559-561)GCT>GTT	p.A187V	TMCO7_uc002ewh.2_Missense_Mutation_p.A187V	NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	187						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		TGTTTTGATGCTGCCCCCGAT	0.512												
TMCO7	79613	broad.mit.edu	37	16	69008054	69008054	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:69008054G>A	uc002ewi.3	+	15	2837	c.2825G>A	c.(2824-2826)CGA>CAA	p.R942Q		NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	942						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		GTCCTTATGCGAATCGTCAGG	0.473												
TMED6	146456	broad.mit.edu	37	16	69385573	69385573	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:69385573A>G	uc002exc.1	-	1	117	c.84T>C	c.(82-84)AGT>AGC	p.S28S		NM_144676	NP_653277	Q8WW62	TMED6_HUMAN	transmembrane emp24 protein transport domain	28	Lumenal (Potential).				transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1						CCCCAGAGCCACTTAGAGGTT	0.552												
NFAT5	10725	broad.mit.edu	37	16	69729043	69729043	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:69729043T>C	uc002exm.1	+	13	5573	c.4365T>C	c.(4363-4365)TGT>TGC	p.C1455C	NFAT5_uc002exi.2_Silent_p.C1379C|NFAT5_uc002exj.1_Silent_p.C1379C|NFAT5_uc002exk.1_Silent_p.C1379C|NFAT5_uc002exl.1_Silent_p.C1473C|NFAT5_uc002exn.1_Silent_p.C1472C|NFAT5_uc002exo.1_Intron	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	1455					excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTGCAGACTGTAGTCAGCTTT	0.428												
NQO1	1728	broad.mit.edu	37	16	69752360	69752360	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:69752360C>T	uc002exp.2	-	2	276	c.85G>A	c.(85-87)GCT>ACT	p.A29T	NQO1_uc010cfm.2_Missense_Mutation_p.A8T|NQO1_uc002exq.2_Missense_Mutation_p.A29T|NQO1_uc002exr.2_Missense_Mutation_p.A29T|NQO1_uc010vll.1_Missense_Mutation_p.A29T	NM_000903	NP_000894	P15559	NQO1_HUMAN	NAD(P)H menadione oxidoreductase 1,	29					nitric oxide biosynthetic process|regulation of cellular amino acid metabolic process|response to toxin|synaptic transmission, cholinergic|xenobiotic metabolic process	cytosol	coenzyme binding|cytochrome-b5 reductase activity|electron carrier activity|NAD(P)H dehydrogenase (quinone) activity				0					Dicumarol(DB00266)|Menadione(DB00170)	TTCTTCAAAGCCGCTGCAGCA	0.512												
WWP2	11060	broad.mit.edu	37	16	69971539	69971539	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:69971539T>A	uc002exu.1	+	22	2416	c.2327T>A	c.(2326-2328)ATC>AAC	p.I776N	WWP2_uc002exv.1_Missense_Mutation_p.I776N|WWP2_uc010vlm.1_Missense_Mutation_p.I660N|WWP2_uc010vln.1_Missense_Mutation_p.I394N|WWP2_uc002exw.1_Missense_Mutation_p.I337N	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	776	HECT.				entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						AGCAAGCAGATCCAGTGGTTC	0.607												
IL34	146433	broad.mit.edu	37	16	70690978	70690978	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:70690978T>C	uc002ezh.1	+	4	739	c.356T>C	c.(355-357)CTG>CCG	p.L119P	IL34_uc002ezi.1_Missense_Mutation_p.L118P	NM_152456	NP_689669	Q6ZMJ4	IL34_HUMAN	interleukin 34 precursor	119					positive regulation of cell proliferation|positive regulation of protein phosphorylation	extracellular space	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding			central_nervous_system(1)|skin(1)	2						TGGAAGTACCTGCAGGAGGTG	0.622												
HYDIN	54768	broad.mit.edu	37	16	71127727	71127727	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:71127727C>T	uc002ezr.2	-	11	1567	c.1439G>A	c.(1438-1440)TGT>TAT	p.C480Y	HYDIN_uc010cfz.1_Missense_Mutation_p.C225Y|HYDIN_uc002ezv.2_Missense_Mutation_p.C480Y|HYDIN_uc010vmc.1_Missense_Mutation_p.C497Y|HYDIN_uc010vmd.1_Missense_Mutation_p.C507Y|HYDIN_uc002ezw.3_Missense_Mutation_p.C497Y	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	480										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TACCTCATAACAATGTGCAGA	0.393												
HYDIN	54768	broad.mit.edu	37	16	71218773	71218773	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:71218773G>A	uc002ezr.2	-	3	384	c.256C>T	c.(256-258)CAG>TAG	p.Q86*	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Nonsense_Mutation_p.Q86*|HYDIN_uc010vmc.1_Nonsense_Mutation_p.Q103*|HYDIN_uc010vmd.1_Nonsense_Mutation_p.Q113*|HYDIN_uc002ezw.3_Nonsense_Mutation_p.Q103*	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	86										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GCTACCTTCTGATGTGTTGTT	0.443												
FTSJD1	55783	broad.mit.edu	37	16	71317627	71317627	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:71317627C>T	uc010cga.2	-	3	2603	c.2197G>A	c.(2197-2199)GGG>AGG	p.G733R	FTSJD1_uc002ezy.3_Missense_Mutation_p.G733R|FTSJD1_uc002ezz.3_Missense_Mutation_p.G733R	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	733						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						AGCAGGGCCCCCTTAAGGAGT	0.423												
CHST4	10164	broad.mit.edu	37	16	71570605	71570605	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:71570605C>T	uc002fan.2	+	2	206	c.25C>T	c.(25-27)CTC>TTC	p.L9F	CHST4_uc002fao.2_Missense_Mutation_p.L9F	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	9	Helical; Signal-anchor for type II membrane protein; (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						AAAAATGAAGCTCCTGCTGTT	0.473												
TAT	6898	broad.mit.edu	37	16	71609922	71609922	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:71609922A>G	uc002fap.2	-	3	342	c.243T>C	c.(241-243)CCT>CCC	p.P81P	TAT_uc002faq.2_Silent_p.P81P|TAT_uc002far.2_Missense_Mutation_p.Y133H	NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	81					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	CAAACACAGTAGGGTCCCCTT	0.493												
AP1G1	164	broad.mit.edu	37	16	71799413	71799413	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:71799413A>G	uc010cgg.2	-	7	1031	c.717T>C	c.(715-717)GGT>GGC	p.G239G	AP1G1_uc002fba.2_Silent_p.G242G|AP1G1_uc002fbb.2_Silent_p.G262G|AP1G1_uc010vmg.1_RNA	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	239					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				GGTCACTGATACCAGAAACAT	0.348												
DHX38	9785	broad.mit.edu	37	16	72130232	72130232	+	Missense_Mutation	SNP	G	G	A	rs150592983	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:72130232G>A	uc002fcb.2	+	2	531	c.176G>A	c.(175-177)CGG>CAG	p.R59Q	TXNL4B_uc010cgl.2_5'Flank|TXNL4B_uc002fca.2_5'Flank|TXNL4B_uc010vmn.1_5'Flank|TXNL4B_uc010vmo.1_5'Flank|DHX38_uc010vmp.1_Missense_Mutation_p.R59Q|DHX38_uc010cgn.1_5'Flank	NM_014003	NP_054722	Q92620	PRP16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 38	59					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1		Ovarian(137;0.125)				TCCCTGAAACGGAGAGAGCGA	0.547												
ZFHX3	463	broad.mit.edu	37	16	72828908	72828908	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:72828908T>C	uc002fck.2	-	9	8346	c.7673A>G	c.(7672-7674)AAC>AGC	p.N2558S	ZFHX3_uc002fcl.2_Missense_Mutation_p.N1644S	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2558					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GATGAACTGGTTCTGCGCGCT	0.552												
ZFHX3	463	broad.mit.edu	37	16	72830804	72830804	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:72830804C>T	uc002fck.2	-	9	6450	c.5777G>A	c.(5776-5778)GGT>GAT	p.G1926D	ZFHX3_uc002fcl.2_Missense_Mutation_p.G1012D	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	1926					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				AGGCTCAGAACCACCCCCTGG	0.587												
ZFHX3	463	broad.mit.edu	37	16	72923801	72923801	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:72923801A>G	uc002fck.2	-	4	3950	c.3277T>C	c.(3277-3279)TGC>CGC	p.C1093R	ZFHX3_uc002fcl.2_Missense_Mutation_p.C179R	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	1093	C2H2-type 9; atypical.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GAGTAGTTGCACAGAACGCAG	0.547												
WWOX	51741	broad.mit.edu	37	16	78466543	78466543	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:78466543C>T	uc002ffk.2	+	8	1075	c.950C>T	c.(949-951)ACG>ATG	p.T317M	WWOX_uc010vnk.1_Missense_Mutation_p.T204M|WWOX_uc002ffl.2_Intron|WWOX_uc010che.2_Intron	NM_016373	NP_057457	Q9NZC7	WWOX_HUMAN	WW domain-containing oxidoreductase isoform 1	317	Interaction with MAPT (By similarity).				apoptosis|negative regulation of Wnt receptor signaling pathway|steroid metabolic process|Wnt receptor signaling pathway	Golgi apparatus|mitochondrion|nucleus	coenzyme binding|oxidoreductase activity|protein dimerization activity				0		all_cancers(2;1.97e-181)|all_epithelial(2;3.85e-160)|all_lung(2;2.03e-39)|Lung NSC(2;7.16e-35)|Colorectal(2;6.96e-21)|all_hematologic(2;1.13e-16)|Melanoma(2;5.16e-06)|all_neural(2;8.84e-06)|Renal(2;5.26e-05)|Medulloblastoma(2;0.00498)|Breast(2;0.00631)|Lung SC(2;0.0261)|Prostate(104;0.167)		UCEC - Uterine corpus endometrioid carcinoma (2;0.012)|Epithelial(1;2.65e-39)|all cancers(1;3.26e-34)|STAD - Stomach adenocarcinoma(1;5.1e-20)|COAD - Colon adenocarcinoma(1;1.04e-11)|Colorectal(1;3.4e-11)|OV - Ovarian serous cystadenocarcinoma(1;1.01e-10)|BRCA - Breast invasive adenocarcinoma(1;0.00196)|Kidney(780;0.232)		CGCGGGGTCACGTCGAACGCA	0.537												
ATMIN	23300	broad.mit.edu	37	16	81077032	81077032	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:81077032A>C	uc002ffz.1	+	4	947	c.929A>C	c.(928-930)CAG>CCG	p.Q310P	ATMIN_uc002fga.2_Missense_Mutation_p.Q152P|ATMIN_uc010vnn.1_Missense_Mutation_p.Q81P|ATMIN_uc002fgb.1_Missense_Mutation_p.Q152P	NM_015251	NP_056066	O43313	ATMIN_HUMAN	ATM interactor	310	Required for formation of RAD51 foci.				response to DNA damage stimulus	nucleus	zinc ion binding				0						CCCGTGATGCAGTTTTCTGTC	0.502												
ATMIN	23300	broad.mit.edu	37	16	81078356	81078356	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:81078356A>G	uc002ffz.1	+	4	2271	c.2253A>G	c.(2251-2253)ATA>ATG	p.I751M	ATMIN_uc002fga.2_Missense_Mutation_p.I593M|ATMIN_uc010vnn.1_Missense_Mutation_p.I522M|ATMIN_uc002fgb.1_Missense_Mutation_p.I593M	NM_015251	NP_056066	O43313	ATMIN_HUMAN	ATM interactor	751					response to DNA damage stimulus	nucleus	zinc ion binding				0						CTAAAAATATACCTGCTCTAG	0.448												
PKD1L2	114780	broad.mit.edu	37	16	81161381	81161381	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:81161381C>T	uc002fgh.1	-	38	6335	c.6335G>A	c.(6334-6336)CGC>CAC	p.R2112H	PKD1L2_uc002fgf.1_5'UTR|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2112	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CGTGCTTTGGCGATCAGTCCC	0.517												
GAN	8139	broad.mit.edu	37	16	81411130	81411130	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:81411130A>G	uc002fgo.2	+	11	1871	c.1723A>G	c.(1723-1725)ATT>GTT	p.I575V		NM_022041	NP_071324	Q9H2C0	GAN_HUMAN	gigaxonin	575					cell death	cytoplasm|neurofilament	protein binding			ovary(2)	2		Colorectal(91;0.153)				AGCCTTACGCATTGCGAATTG	0.522												
CMIP	80790	broad.mit.edu	37	16	81733390	81733390	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:81733390A>G	uc002fgp.2	+	15	1811	c.1739A>G	c.(1738-1740)AAC>AGC	p.N580S	CMIP_uc002fgq.1_Missense_Mutation_p.N486S|CMIP_uc010vnq.1_Missense_Mutation_p.N393S|CMIP_uc002fgr.1_Missense_Mutation_p.N427S	NM_198390	NP_938204	Q8IY22	CMIP_HUMAN	c-Maf-inducing protein isoform C-mip	546						cytoplasm|nucleus					0						CTGAGGGGGAACCAGACCATG	0.607												
PLCG2	5336	broad.mit.edu	37	16	81819728	81819728	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:81819728T>C	uc002fgt.2	+	2	286	c.134T>C	c.(133-135)GTG>GCG	p.V45A	PLCG2_uc010chg.1_Missense_Mutation_p.V45A	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	45	PH.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						ACCGTCCAGGTGATCATGGAG	0.612												
CDH13	1012	broad.mit.edu	37	16	83817018	83817018	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:83817018C>T	uc002fgx.2	+	13	2195	c.2075C>T	c.(2074-2076)GCA>GTA	p.A692V	CDH13_uc010vns.1_Missense_Mutation_p.A739V|CDH13_uc010vnt.1_Missense_Mutation_p.A438V|CDH13_uc010vnu.1_Missense_Mutation_p.A653V	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	692	Cadherin 5.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		TGCAACGCGGCAGGGGCCCTG	0.522												
SLC38A8	146167	broad.mit.edu	37	16	84067027	84067027	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:84067027A>G	uc002fhg.1	-	3	436	c.436T>C	c.(436-438)TAC>CAC	p.Y146H		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	146					amino acid transport|sodium ion transport	integral to membrane					0						TGGTCTGCGTACCACGGCTGC	0.642												
KIAA1609	57707	broad.mit.edu	37	16	84520276	84520276	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:84520276A>G	uc002fib.2	-	5	1026	c.919T>C	c.(919-921)TTT>CTT	p.F307L	KIAA1609_uc010vod.1_Missense_Mutation_p.F280L|KIAA1609_uc002fic.2_RNA	NM_020947	NP_065998	Q6P9B6	K1609_HUMAN	hypothetical protein LOC57707	307	TLD.						protein binding			ovary(2)	2						CAAGAGGCAAACCCACCGAAC	0.567												
USP10	9100	broad.mit.edu	37	16	84778843	84778843	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:84778843G>T	uc002fii.2	+	4	898	c.756G>T	c.(754-756)CAG>CAT	p.Q252H	USP10_uc010voe.1_Missense_Mutation_p.Q256H|USP10_uc010vof.1_Intron|USP10_uc002fij.2_5'UTR	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	252					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						ATTTTGGTCAGTCCTGCTTCC	0.602												
KIAA0182	23199	broad.mit.edu	37	16	85689518	85689518	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:85689518G>A	uc002fix.2	+	6	1058	c.984G>A	c.(982-984)GCG>GCA	p.A328A	KIAA0182_uc002fiw.2_Silent_p.A224A|KIAA0182_uc002fiy.2_Silent_p.A255A	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	328	Potential.						protein binding			large_intestine(3)|ovary(1)|skin(1)	5						GCCTCAGCGCGGAGAGGTAAG	0.657												
JPH3	57338	broad.mit.edu	37	16	87678007	87678007	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:87678007G>A	uc002fkd.2	+	2	780	c.526G>A	c.(526-528)GCG>ACG	p.A176T	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	176	Cytoplasmic (Potential).			A -> P (in Ref. 1; BAB11983).	calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		CAACGGCACGGCGCTGCATCC	0.711												
ZFPM1	161882	broad.mit.edu	37	16	88599263	88599263	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:88599263A>G	uc002fkv.2	+	9	1142	c.1109A>G	c.(1108-1110)AAC>AGC	p.N370S		NM_153813	NP_722520	Q8IX07	FOG1_HUMAN	zinc finger protein, multitype 1	370	C2H2-type 3.				blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|transcription factor binding|zinc ion binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0478)		TTGGTCACCAACCACATGGTC	0.642												
CYBA	1535	broad.mit.edu	37	16	88714464	88714464	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:88714464A>G	uc002flb.2	-	2	153	c.117T>C	c.(115-117)GGT>GGC	p.G39G	CYBA_uc002flc.1_5'Flank|CYBA_uc002fld.1_Silent_p.G39G|CYBA_uc010chx.1_Silent_p.G39G	NM_000101	NP_000092	P13498	CY24A_HUMAN	cytochrome b, alpha polypeptide	39					cytochrome complex assembly|electron transport chain|hydrogen peroxide biosynthetic process|inflammatory response|innate immune response|respiratory burst|smooth muscle hypertrophy|superoxide anion generation|transport	NADPH oxidase complex|stored secretory granule	electron carrier activity|heme binding|protein heterodimerization activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0478)		TGGAGTAGGCACCAAAGTACC	0.657												
MVD	4597	broad.mit.edu	37	16	88724403	88724403	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:88724403T>C	uc002flg.1	-	3	183	c.176A>G	c.(175-177)GAC>GGC	p.D59G	MVD_uc002flf.1_5'Flank	NM_002461	NP_002452	P53602	MVD1_HUMAN	diphosphomevalonate decarboxylase	59					cholesterol biosynthetic process|positive regulation of cell proliferation	cytosol	ATP binding|diphosphomevalonate decarboxylase activity|Hsp70 protein binding|kinase activity|protein homodimerization activity				0				BRCA - Breast invasive adenocarcinoma(80;0.0478)		CTCGGTGAAGTCCTTGCTGAT	0.612												
CBFA2T3	863	broad.mit.edu	37	16	88951603	88951603	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:88951603G>A	uc002fmm.1	-	7	1154	c.968C>T	c.(967-969)CCT>CTT	p.P323L	CBFA2T3_uc002fml.1_Missense_Mutation_p.P237L|CBFA2T3_uc010cif.1_Missense_Mutation_p.P262L|CBFA2T3_uc002fmn.1_Missense_Mutation_p.P298L	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	323	Mediates localization to the nucleus (By similarity).|Mediates interaction with PDE7A (in isoform 2).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		GCGCTGGGCAGGGTTCAGGGT	0.682			T	RUNX1	AML							
ANKRD11	29123	broad.mit.edu	37	16	89346505	89346505	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:89346505C>T	uc002fmx.1	-	9	6906	c.6445G>A	c.(6445-6447)GCA>ACA	p.A2149T	ANKRD11_uc002fmy.1_Missense_Mutation_p.A2149T|ANKRD11_uc002fnc.1_Missense_Mutation_p.A2149T|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.A2106T	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	2149	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TCACCATCTGCGGCATCTTTA	0.657												
ANKRD11	29123	broad.mit.edu	37	16	89348369	89348369	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:89348369A>G	uc002fmx.1	-	9	5042	c.4581T>C	c.(4579-4581)GAT>GAC	p.D1527D	ANKRD11_uc002fmy.1_Silent_p.D1527D|ANKRD11_uc002fnc.1_Silent_p.D1527D|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Silent_p.D1484D	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1527	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TCAGTTTGGCATCGCCGAGCC	0.592												
DPEP1	1800	broad.mit.edu	37	16	89703685	89703685	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:89703685C>T	uc010cin.2	+	7	868	c.665C>T	c.(664-666)GCC>GTC	p.A222V	DPEP1_uc002fnr.3_Missense_Mutation_p.A222V|DPEP1_uc002fns.3_Missense_Mutation_p.A222V	NM_001128141	NP_001121613	P16444	DPEP1_HUMAN	dipeptidase 1 precursor	222					proteolysis	anchored to membrane|apical plasma membrane|microvillus membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity|protein binding			large_intestine(1)	1		all_lung(18;0.0054)|all_hematologic(23;0.094)		BRCA - Breast invasive adenocarcinoma(80;0.0258)	Cilastatin(DB01597)	ACCATGAAGGCCACCCTGCAG	0.647												
SPATA2L	124044	broad.mit.edu	37	16	89764463	89764463	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:89764463G>A	uc002foj.2	-	3	619	c.554C>T	c.(553-555)GCA>GTA	p.A185V	SPATA2L_uc002fok.2_Intron	NM_152339	NP_689552	Q8IUW3	SPA2L_HUMAN	spermatogenesis associated 2-like	185											0		Lung NSC(15;0.00043)|all_lung(18;0.000665)|all_hematologic(23;0.0355)		BRCA - Breast invasive adenocarcinoma(80;0.0272)		GGCACGCCGTGCCTGCAGCAG	0.726												
C17orf97	400566	broad.mit.edu	37	17	263612	263612	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:263612C>T	uc002frh.2	+	3	1024	c.1008C>T	c.(1006-1008)CAC>CAT	p.H336H	C17orf97_uc010vpz.1_RNA	NM_001013672	NP_001013694	Q6ZQX7	CQ097_HUMAN	hypothetical protein LOC400566	356	16.|20 X 10 AA approximative tandem repeat of A-L-K-G-F-H-P-D-P-E.									ovary(1)	1						AGGGCTTCCACCCCGACCCCA	0.706												
TUSC5	286753	broad.mit.edu	37	17	1183350	1183350	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:1183350G>A	uc002fsi.1	+	1	394	c.55G>A	c.(55-57)GCA>ACA	p.A19T		NM_172367	NP_758955	Q8IXB3	TUSC5_HUMAN	LOST1	19					response to biotic stimulus	integral to membrane				skin(2)	2				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		AGGCTCCGCCGCATTCCTGGA	0.637												
SCARF1	8578	broad.mit.edu	37	17	1538649	1538649	+	Silent	SNP	G	G	A	rs144909941	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:1538649G>A	uc002fsz.1	-	11	1946	c.1896C>T	c.(1894-1896)GCC>GCT	p.A632A	SCARF1_uc002fsy.1_3'UTR|SCARF1_uc002fta.1_RNA|SCARF1_uc010cjv.1_Silent_p.A546A	NM_003693	NP_003684	Q14162	SREC_HUMAN	scavenger receptor class F, member 1 isoform 1	632	Gly-rich.|Cytoplasmic (Potential).				cell adhesion|neuron remodeling|positive regulation of axon regeneration|receptor-mediated endocytosis	integral to membrane	low-density lipoprotein particle binding|scavenger receptor activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TGGACTCTTCGGCTTCCCGGC	0.701												
RTN4RL1	146760	broad.mit.edu	37	17	1840972	1840972	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:1840972G>A	uc002ftp.2	-	2	163	c.144C>T	c.(142-144)ATC>ATT	p.I48I		NM_178568	NP_848663	Q86UN2	R4RL1_HUMAN	reticulon 4 receptor-like 1 precursor	48	LRRNT.				axon regeneration	anchored to plasma membrane	receptor activity				0						TGCCCTCCGGGATGGCTGCAA	0.682												
RTN4RL1	146760	broad.mit.edu	37	17	1841027	1841027	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:1841027A>G	uc002ftp.2	-	2	108	c.89T>C	c.(88-90)GTG>GCG	p.V30A		NM_178568	NP_848663	Q86UN2	R4RL1_HUMAN	reticulon 4 receptor-like 1 precursor	30	LRRNT.				axon regeneration	anchored to plasma membrane	receptor activity				0						CGGGTAGCACACACAGTCCCG	0.662												
SMG6	23293	broad.mit.edu	37	17	2076067	2076067	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:2076067T>C	uc002fub.1	-	13	3297	c.3242A>G	c.(3241-3243)GAC>GGC	p.D1081G	SMG6_uc010vqv.1_Missense_Mutation_p.D173G	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	1081					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						ATCATCCGGGTCCTTGTACAG	0.537												
KIAA0664	23277	broad.mit.edu	37	17	2604947	2604947	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:2604947C>T	uc002fuy.1	-	5	676	c.590G>A	c.(589-591)CGG>CAG	p.R197Q	KIAA0664_uc002fux.1_Missense_Mutation_p.R129Q	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	197							binding			breast(2)	2						ACACAGTGGCCGCTCCCGGCT	0.667												
OR1D2	4991	broad.mit.edu	37	17	2996177	2996177	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:2996177C>T	uc010vrb.1	-	1	114	c.114G>A	c.(112-114)ACG>ACA	p.T38T		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	38	Helical; Name=1; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						TTCCCACCACCGTGACCAGGT	0.552												
OR1A2	26189	broad.mit.edu	37	17	3101155	3101155	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:3101155T>C	uc002fvd.1	+	1	343	c.343T>C	c.(343-345)TTG>CTG	p.L115L		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CAGCTATACCTTGGCTGCAAT	0.502												
OR1E1	8387	broad.mit.edu	37	17	3301298	3301298	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:3301298A>G	uc002fvj.1	-	1	407	c.407T>C	c.(406-408)ATG>ACG	p.M136T		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATGGGGCTCATGATGGCGGT	0.552												
TRPV3	162514	broad.mit.edu	37	17	3424299	3424299	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:3424299A>G	uc002fvt.1	-	14	2100	c.1778T>C	c.(1777-1779)GTA>GCA	p.V593A	TRPV3_uc002fvs.1_RNA|TRPV3_uc010vrh.1_Missense_Mutation_p.V577A|TRPV3_uc010vri.1_Missense_Mutation_p.V548A|TRPV3_uc010vrj.1_Missense_Mutation_p.V577A|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Missense_Mutation_p.V577A|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.V593A|TRPV3_uc002fvu.2_Missense_Mutation_p.V593A|TRPV3_uc010vrn.1_3'UTR	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	593	Helical; (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	CACGATATATACAAACAAGAA	0.328												
ATP2A3	489	broad.mit.edu	37	17	3839611	3839611	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:3839611C>T	uc002fxb.1	-	16	2625	c.2474G>A	c.(2473-2475)CGA>CAA	p.R825Q	ATP2A3_uc002fwx.1_Missense_Mutation_p.R825Q|ATP2A3_uc002fwy.1_Missense_Mutation_p.R825Q|ATP2A3_uc002fwz.1_Missense_Mutation_p.R825Q|ATP2A3_uc002fxa.1_Missense_Mutation_p.R825Q|ATP2A3_uc002fxc.1_Missense_Mutation_p.R825Q|ATP2A3_uc002fxd.1_Missense_Mutation_p.R825Q	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	825	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		GAGGGCTTCTCGGGGGCTCCG	0.617												
ATP2A3	489	broad.mit.edu	37	17	3850769	3850769	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:3850769C>T	uc002fxb.1	-	8	1162	c.1011G>A	c.(1009-1011)CCG>CCA	p.P337P	ATP2A3_uc002fwx.1_Silent_p.P337P|ATP2A3_uc002fwy.1_Silent_p.P337P|ATP2A3_uc002fwz.1_Silent_p.P337P|ATP2A3_uc002fxa.1_Silent_p.P337P|ATP2A3_uc002fxc.1_Silent_p.P337P|ATP2A3_uc002fxd.1_Silent_p.P337P	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	337	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		TCTCCACGGACGGCAGGCTTC	0.662												
ANKFY1	51479	broad.mit.edu	37	17	4111302	4111302	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:4111302A>G	uc002fxq.1	-	6	696	c.658T>C	c.(658-660)TAC>CAC	p.Y220H	ANKFY1_uc002fxn.2_Missense_Mutation_p.Y262H|ANKFY1_uc002fxo.2_Missense_Mutation_p.Y220H|ANKFY1_uc002fxp.2_Missense_Mutation_p.Y220H|ANKFY1_uc010ckp.2_Missense_Mutation_p.Y161H|ANKFY1_uc002fxr.2_Missense_Mutation_p.Y220H	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	220	ANK 1.					endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						TGTAGCGGGTACTCTGTCTTG	0.438												
GGT6	124975	broad.mit.edu	37	17	4462881	4462881	+	Nonsense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:4462881G>C	uc002fyd.3	-	2	375	c.315C>G	c.(313-315)TAC>TAG	p.Y105*	GGT6_uc010vsb.1_5'UTR|GGT6_uc002fyc.3_Nonsense_Mutation_p.Y105*|GGT6_uc010vsc.1_Nonsense_Mutation_p.Y105*	NM_001122890	NP_001116362	Q6P531	GGT6_HUMAN	gamma-glutamyltransferase 6 isoform a	105	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			skin(1)	1						CACCGTGGTGGTATACGCCAG	0.682												
MINK1	50488	broad.mit.edu	37	17	4796762	4796762	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:4796762G>A	uc010vsl.1	+	21	2630	c.2434G>A	c.(2434-2436)GAG>AAG	p.E812K	MINK1_uc010vsk.1_Missense_Mutation_p.E783K|MINK1_uc010vsm.1_Missense_Mutation_p.E792K|MINK1_uc010vsn.1_Missense_Mutation_p.E775K|MINK1_uc010vso.1_Missense_Mutation_p.E720K|MINK1_uc010vsp.1_Missense_Mutation_p.E273K	NM_153827	NP_722549	Q8N4C8	MINK1_HUMAN	misshapen-like kinase 1 isoform 3	812					JNK cascade	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)|skin(1)	6						GACTCTGGACGAGGCCCCTCG	0.642												
KIF1C	10749	broad.mit.edu	37	17	4905794	4905794	+	Silent	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:4905794A>C	uc002gan.1	+	7	791	c.465A>C	c.(463-465)CGA>CGC	p.R155R		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	155	Kinesin-motor.				microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						AGCGGGTACGAGACCTCTTGA	0.522												
KIF1C	10749	broad.mit.edu	37	17	4927012	4927012	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:4927012G>A	uc002gan.1	+	23	3204	c.2878G>A	c.(2878-2880)GGG>AGG	p.G960R		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	960				SGGRGGGL -> LWGPGRGV (in Ref. 1; AAC52117).	microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						GGGCCGGGGCGGGGGGCTGCG	0.692												
KIF1C	10749	broad.mit.edu	37	17	4927266	4927266	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:4927266T>C	uc002gan.1	+	23	3458	c.3132T>C	c.(3130-3132)GGT>GGC	p.G1044G		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	1044	Pro-rich.				microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						GGGGAGCGGGTTCTGCACAGC	0.697												
USP6	9098	broad.mit.edu	37	17	5058884	5058884	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:5058884T>C	uc002gau.1	+	31	5041	c.2811T>C	c.(2809-2811)AGT>AGC	p.S937S	USP6_uc002gav.1_Silent_p.S937S|USP6_uc010ckz.1_Silent_p.S620S	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	937					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						AGGAAGCTAGTATTCATGCCC	0.438			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts							
C17orf87	388325	broad.mit.edu	37	17	5114221	5114221	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:5114221C>T	uc002gbh.2	-	5	346	c.313G>A	c.(313-315)GCT>ACT	p.A105T	uc002gbf.1_Intron|uc002gbg.1_Intron|C17orf87_uc010clb.1_Missense_Mutation_p.A98T	NM_207103	NP_996986	Q6UWF3	CQ087_HUMAN	hypothetical protein LOC388325	105						integral to membrane				ovary(1)	1						GAGTATGTAGCGGGCGGCTGA	0.428												
RABEP1	9135	broad.mit.edu	37	17	5253788	5253788	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:5253788T>C	uc002gbm.3	+	7	1051	c.827T>C	c.(826-828)TTA>TCA	p.L276S	RABEP1_uc010clc.1_Missense_Mutation_p.L269S|RABEP1_uc010cld.1_Missense_Mutation_p.L233S|RABEP1_uc010vsw.1_Missense_Mutation_p.L233S|RABEP1_uc002gbl.3_Missense_Mutation_p.L276S	NM_004703	NP_004694	Q15276	RABE1_HUMAN	rabaptin, RAB GTPase binding effector protein 1	276	Potential.				apoptosis|cellular membrane fusion|endocytosis|protein transport	centrosome|early endosome|endocytic vesicle|recycling endosome	growth factor activity|GTPase activator activity|protein homodimerization activity			large_intestine(1)|ovary(1)	2						CACAACCAGTTAAAACATACG	0.438												
RABEP1	9135	broad.mit.edu	37	17	5264841	5264841	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:5264841G>A	uc002gbm.3	+	9	1658	c.1434G>A	c.(1432-1434)GCG>GCA	p.A478A	RABEP1_uc010clc.1_Silent_p.A471A|RABEP1_uc010cld.1_Silent_p.A435A|RABEP1_uc010vsw.1_Silent_p.A435A|RABEP1_uc002gbl.3_Silent_p.A478A|NUP88_uc002gbn.2_RNA	NM_004703	NP_004694	Q15276	RABE1_HUMAN	rabaptin, RAB GTPase binding effector protein 1	478					apoptosis|cellular membrane fusion|endocytosis|protein transport	centrosome|early endosome|endocytic vesicle|recycling endosome	growth factor activity|GTPase activator activity|protein homodimerization activity			large_intestine(1)|ovary(1)	2						CAATCAAGGCGATGACACCAG	0.488												
KIAA0753	9851	broad.mit.edu	37	17	6498335	6498335	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:6498335G>A	uc002gde.3	-	16	2756	c.2397C>T	c.(2395-2397)ATC>ATT	p.I799I	KIAA0753_uc010vtd.1_Silent_p.I255I|KIAA0753_uc010clo.2_Silent_p.I500I|KIAA0753_uc010vte.1_Silent_p.I500I	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	799						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		CAGCATATGCGATTTTATTAT	0.254												
SLC13A5	284111	broad.mit.edu	37	17	6606404	6606404	+	Missense_Mutation	SNP	G	G	A	rs142320179		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:6606404G>A	uc002gdj.2	-	5	689	c.601C>T	c.(601-603)CGG>TGG	p.R201W	SLC13A5_uc010vtf.1_Missense_Mutation_p.R201W|SLC13A5_uc010clq.2_Missense_Mutation_p.R158W|SLC13A5_uc002gdk.2_Missense_Mutation_p.R184W|SLC13A5_uc002gdl.1_Missense_Mutation_p.R183W	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	201						integral to membrane	citrate transmembrane transporter activity				0						AACCTCTTCCGCTCTTGGTCT	0.632												
XAF1	54739	broad.mit.edu	37	17	6661451	6661451	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:6661451T>C	uc002gdn.2	+	2	318	c.76T>C	c.(76-78)TAC>CAC	p.Y26H	XAF1_uc010clr.1_Missense_Mutation_p.Y26H|XAF1_uc002gdm.1_5'UTR|XAF1_uc002gdo.2_Missense_Mutation_p.Y26H|XAF1_uc002gdp.2_Silent_p.L3L|XAF1_uc002gdq.2_5'UTR|XAF1_uc002gdr.2_Silent_p.L3L	NM_017523	NP_059993	Q6GPH4	XAF1_HUMAN	XIAP associated factor 1 isoform 1	26	TRAF-type.				apoptosis|type I interferon-mediated signaling pathway	mitochondrion|nucleus	zinc ion binding				0						CCATGAGGCTTACTGCCTGCG	0.493												
DLG4	1742	broad.mit.edu	37	17	7096856	7096856	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7096856C>T	uc002get.3	-	18	2969	c.1768G>A	c.(1768-1770)GCC>ACC	p.A590T	DLG4_uc010vtm.1_RNA|DLG4_uc010vtn.1_Missense_Mutation_p.A487T|DLG4_uc010cly.2_Missense_Mutation_p.A544T|DLG4_uc010vto.1_Missense_Mutation_p.A587T	NM_001365	NP_001356	P78352	DLG4_HUMAN	post-synaptic density protein 95 isoform 1	547	Guanylate kinase-like.				axon guidance|learning|protein complex assembly|protein localization to synapse|signal transduction|synaptic transmission	cell junction|cortical cytoskeleton|endocytic vesicle membrane|neuron spine|postsynaptic density|postsynaptic membrane|synaptosome	protein binding|protein C-terminus binding			ovary(1)|breast(1)	2						TCATCGTTGGCGCGGTCCTTG	0.612												
EIF5A	1984	broad.mit.edu	37	17	7214949	7214949	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7214949T>C	uc010vtv.1	+	5	692	c.455T>C	c.(454-456)ATG>ACG	p.M152T	EIF5A_uc002gfr.2_Missense_Mutation_p.M182T|EIF5A_uc002gft.2_Missense_Mutation_p.M152T|EIF5A_uc002gfu.2_Missense_Mutation_p.M152T	NM_001970	NP_001961	P63241	IF5A1_HUMAN	eukaryotic translation initiation factor 5A	152					induction of apoptosis|mRNA export from nucleus|peptidyl-lysine modification to hypusine|positive regulation of cell proliferation|positive regulation of translational elongation|positive regulation of translational termination|post-translational protein modification|protein export from nucleus|translational frameshifting|transmembrane transport	annulate lamellae|cytosol|endoplasmic reticulum membrane|nuclear pore	protein N-terminus binding|ribosome binding|translation elongation factor activity|U6 snRNA binding				0						ATCAAGGCCATGGCAAAATAA	0.498												
TMEM95	339168	broad.mit.edu	37	17	7259720	7259720	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7259720A>G	uc002ggh.1	+	6	446	c.419A>G	c.(418-420)GAT>GGT	p.D140G	TMEM95_uc002ggf.1_Missense_Mutation_p.D148G|TMEM95_uc002ggg.1_Silent_p.G137G	NM_198154	NP_937797	Q3KNT9	TMM95_HUMAN	transmembrane protein 95	140	Extracellular (Potential).					integral to membrane					0		Prostate(122;0.173)				GGAAGTCAGGATCTTTGGGAA	0.567											OREG0024137	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
PLSCR3	57048	broad.mit.edu	37	17	7296194	7296194	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7296194G>A	uc002ggm.1	-	6	794	c.585C>T	c.(583-585)TCC>TCT	p.S195S	PLSCR3_uc002ggl.2_Silent_p.S171S|PLSCR3_uc002ggq.1_Silent_p.S26S|PLSCR3_uc002ggn.1_Silent_p.S195S|PLSCR3_uc002ggo.1_Silent_p.S195S|PLSCR3_uc002ggp.1_Silent_p.S26S|PLSCR3_uc002ggr.1_Silent_p.S195S|PLSCR3_uc010cmg.1_Silent_p.S195S	NM_020360	NP_065093	Q9NRY6	PLS3_HUMAN	phospholipid scramblase 3	195	Cytoplasmic (By similarity).				phospholipid scrambling	integral to membrane|plasma membrane	calcium ion binding|calcium-dependent protein binding|phospholipid scramblase activity|SH3 domain binding				0		Prostate(122;0.173)				CATCCTGGATGGAGAACTTGG	0.587												
POLR2A	5430	broad.mit.edu	37	17	7406583	7406583	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7406583G>T	uc002ghf.3	+	17	3134	c.2900G>T	c.(2899-2901)AGG>ATG	p.R967M		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	967					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				GAGGTGCTCAGGGTCATCTTC	0.602												
POLR2A	5430	broad.mit.edu	37	17	7417203	7417203	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7417203T>C	uc002ghf.3	+	29	5854	c.5620T>C	c.(5620-5622)TAC>CAC	p.Y1874H		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	1874	41.|52 X 7 AA approximate tandem repeats of Y-[ST]-P-[STQ]-[ST]-P-[SRTEVKGN].				mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				CTCTCCCAAGTACTCGCCTAC	0.308												
TP53	7157	broad.mit.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7577121G>A	uc002gim.2	-	8	1011	c.817C>T	c.(817-819)CGT>TGT	p.R273C	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.R273C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R141C|TP53_uc010cng.1_Missense_Mutation_p.R141C|TP53_uc002gii.1_Missense_Mutation_p.R141C|TP53_uc010cnh.1_Missense_Mutation_p.R273C|TP53_uc010cni.1_Missense_Mutation_p.R273C|TP53_uc002gij.2_Missense_Mutation_p.R273C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	273	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> N (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> S (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> Y (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> P (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R273H(467)|p.R273C(396)|p.R273L(83)|p.R273P(24)|p.R273S(11)|p.R273G(9)|p.0?(7)|p.R273fs*72(3)|p.?(2)|p.R273fs*33(2)|p.F270fs*72(1)|p.R273_C275delRVC(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.R273R(1)|p.E258fs*71(1)|p.R273fs*71(1)|p.F270_D281del12(1)|p.E271_R273delEVR(1)|p.V272_K292del21(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCACAAACACGCACCTCAAAG	0.542	R273C(SH10TC_STOMACH)|R273C(SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(8MGBA_CENTRAL_NERVOUS_SYSTEM)|R273C(SW1783_CENTRAL_NERVOUS_SYSTEM)|R273C(BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(SW1710_URINARY_TRACT)|R273C(RH30_SOFT_TISSUE)|R273C(PANC0213_PANCREAS)|R273C(SJRH30_SOFT_TISSUE)|R273C(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(RDES_BONE)|R273C(TT2609C02_THYROID)|R273C(MFE319_ENDOMETRIUM)|R273C(RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(EFO27_OVARY)|R273C(NCIH1048_LUNG)|R273C(KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)		
TP53	7157	broad.mit.edu	37	17	7578407	7578407	+	Missense_Mutation	SNP	G	G	A	rs138729528		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7578407G>A	uc002gim.2	-	5	717	c.523C>T	c.(523-525)CGC>TGC	p.R175C	TP53_uc002gig.1_Missense_Mutation_p.R175C|TP53_uc002gih.2_Missense_Mutation_p.R175C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R43C|TP53_uc010cng.1_Missense_Mutation_p.R43C|TP53_uc002gii.1_Missense_Mutation_p.R43C|TP53_uc010cnh.1_Missense_Mutation_p.R175C|TP53_uc010cni.1_Missense_Mutation_p.R175C|TP53_uc002gij.2_Missense_Mutation_p.R175C|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R82C|TP53_uc002gio.2_Missense_Mutation_p.R43C|TP53_uc010vug.1_Missense_Mutation_p.R136C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	175	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> Q (in a sporadic cancer; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> C (in sporadic cancers; somatic mutation).|R -> S (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R175H(721)|p.R175L(19)|p.R175C(12)|p.R175G(11)|p.0?(7)|p.R175P(5)|p.R175S(5)|p.R175R(4)|p.R174fs*24(3)|p.R175_E180delRCPHHE(3)|p.R175fs*5(2)|p.V173fs*59(2)|p.R174fs*1(2)|p.V157_C176del20(1)|p.K164_P219del(1)|p.V173fs*69(1)|p.E171fs*61(1)|p.V173fs*23(1)|p.R174_H178>S(1)|p.V172_E180delVVRRCPHHE(1)|p.R174_H179delRRCPHH(1)|p.E171fs*1(1)|p.R175_H178>X(1)|p.R175fs*6(1)|p.R42fs*24(1)|p.R174_C176delRRC(1)|p.H168fs*69(1)|p.R175fs*72(1)|p.R174fs*70(1)|p.E171_H179delEVVRRCPHH(1)|p.R81fs*24(1)|p.S149fs*72(1)|p.R174_E180>K(1)|p.R174fs*3(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TGGGGGCAGCGCCTCACAACC	0.657		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)		
TP53	7157	broad.mit.edu	37	17	7578419	7578419	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7578419C>T	uc002gim.2	-	5	705	c.511G>A	c.(511-513)GAG>AAG	p.E171K	TP53_uc002gig.1_Missense_Mutation_p.E171K|TP53_uc002gih.2_Missense_Mutation_p.E171K|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.E39K|TP53_uc010cng.1_Missense_Mutation_p.E39K|TP53_uc002gii.1_Missense_Mutation_p.E39K|TP53_uc010cnh.1_Missense_Mutation_p.E171K|TP53_uc010cni.1_Missense_Mutation_p.E171K|TP53_uc002gij.2_Missense_Mutation_p.E171K|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.E78K|TP53_uc002gio.2_Missense_Mutation_p.E39K|TP53_uc010vug.1_Missense_Mutation_p.E132K	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	171	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		E -> G (in sporadic cancers; somatic mutation).|E -> K (in sporadic cancers; somatic mutation).|E -> V (in sporadic cancers; somatic mutation).|E -> D (in sporadic cancers; somatic mutation).|E -> A (in a sporadic cancer; somatic mutation).|E -> Q (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.E171*(10)|p.E171K(8)|p.0?(7)|p.E171G(3)|p.E171Q(3)|p.E171fs*10(3)|p.E171fs*3(2)|p.E171V(2)|p.E171D(2)|p.V157_C176del20(1)|p.K164_P219del(1)|p.P151_V173del23(1)|p.E171fs*61(1)|p.E171fs*9(1)|p.T170fs*2(1)|p.E171fs*1(1)|p.T170fs*8(1)|p.E171_V172delEV(1)|p.H168fs*69(1)|p.T170_E171insXX(1)|p.E171_H179delEVVRRCPHH(1)|p.S149fs*72(1)|p.E171A(1)|p.H168fs*3(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CTCACAACCTCCGTCATGTGC	0.662		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)		
DNAH2	146754	broad.mit.edu	37	17	7636499	7636499	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7636499G>A	uc002giu.1	+	4	508	c.494G>A	c.(493-495)GGC>GAC	p.G165D	DNAH2_uc002git.2_Missense_Mutation_p.G165D|DNAH2_uc010vuk.1_Missense_Mutation_p.G165D	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	165	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ACGGTGCGGGGCCCCTATATC	0.552												
DNAH2	146754	broad.mit.edu	37	17	7644171	7644171	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7644171T>C	uc002giu.1	+	10	1564	c.1550T>C	c.(1549-1551)ATG>ACG	p.M517T	DNAH2_uc002git.2_Missense_Mutation_p.M599T|DNAH2_uc010vuk.1_Missense_Mutation_p.M517T	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	517	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GATCTCTACATGCTGTTCAAT	0.592												
DNAH2	146754	broad.mit.edu	37	17	7646246	7646246	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7646246T>C	uc002giu.1	+	11	1704	c.1690T>C	c.(1690-1692)TGC>CGC	p.C564R	DNAH2_uc002git.2_Missense_Mutation_p.C646R|DNAH2_uc010vuk.1_Missense_Mutation_p.C564R	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	564	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TTCCCCTCAGTGCCTTGCTGG	0.582												
DNAH2	146754	broad.mit.edu	37	17	7721664	7721664	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7721664G>A	uc002giu.1	+	68	10436	c.10422G>A	c.(10420-10422)GAG>GAA	p.E3474E	DNAH2_uc010cnm.1_Silent_p.E412E	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3474	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GCGATAAGGAGGTGGAATATA	0.542												
KDM6B	23135	broad.mit.edu	37	17	7748989	7748989	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7748989C>T	uc002giw.1	+	4	493	c.117C>T	c.(115-117)AGC>AGT	p.S39S	KDM6B_uc002gix.2_5'Flank	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	39	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						CTCCTCGTAGCGCATGGCTGC	0.642												
KDM6B	23135	broad.mit.edu	37	17	7752900	7752900	+	Silent	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7752900G>C	uc002giw.1	+	11	3670	c.3294G>C	c.(3292-3294)GGG>GGC	p.G1098G	KDM6B_uc002gix.2_Silent_p.G400G	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	1098					inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						TTAGTGAGGGGCCCCCCAAGG	0.632												
TRAPPC1	58485	broad.mit.edu	37	17	7834014	7834014	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7834014C>T	uc002gjo.1	-	4	464	c.348G>A	c.(346-348)CCG>CCA	p.P116P	KCNAB3_uc002gjm.1_5'Flank|KCNAB3_uc010vul.1_5'Flank|CNTROB_uc002gjp.2_5'Flank|CNTROB_uc002gjq.2_5'Flank	NM_021210	NP_067033	Q9Y5R8	TPPC1_HUMAN	trafficking protein particle complex 1	116					ER to Golgi vesicle-mediated transport	endoplasmic reticulum					0		Prostate(122;0.173)				TTTGGCCCAGCGGGCACAGGG	0.547												
C17orf68	80169	broad.mit.edu	37	17	8136238	8136238	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:8136238T>C	uc002gkq.3	-	11	1990	c.1931A>G	c.(1930-1932)GAC>GGC	p.D644G	C17orf68_uc010cnv.2_RNA	NM_025099	NP_079375	Q2NKJ3	CTC1_HUMAN	alpha accessory factor 132	644					positive regulation of DNA replication|telomere maintenance	Stn1-Ten1 complex	protein binding|single-stranded DNA binding				0						CAGCCGTGGGTCACTGAGGGG	0.552												
ARHGEF15	22899	broad.mit.edu	37	17	8222131	8222131	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:8222131T>C	uc002glc.2	+	12	2057	c.1936T>C	c.(1936-1938)TGC>CGC	p.C646R	ARHGEF15_uc002gld.2_Missense_Mutation_p.C646R|ARHGEF15_uc010vuw.1_Missense_Mutation_p.C535R	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	646					negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						TGAGTTAGGGTGCCGGAGGGG	0.647												
MYH10	4628	broad.mit.edu	37	17	8384695	8384695	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:8384695C>T	uc002gll.2	-	36	5212	c.5116G>A	c.(5116-5118)GCC>ACC	p.A1706T	MYH10_uc002glm.2_Missense_Mutation_p.A1737T|MYH10_uc010cnx.2_Missense_Mutation_p.A1715T	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	1706	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TCCTGCTCGGCGTGTCGGCGG	0.602												
PIK3R6	146850	broad.mit.edu	37	17	8738627	8738627	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:8738627T>C	uc002glq.1	-	8	848	c.608A>G	c.(607-609)GAG>GGG	p.E203G	PIK3R6_uc002glr.1_RNA|PIK3R6_uc002gls.1_RNA	NM_001010855	NP_001010855	Q5UE93	PI3R6_HUMAN	phosphoinositide-3-kinase, regulatory subunit 6	203					platelet activation	cytosol					0						GTGACAGGCCTCCCCCAGAGC	0.667												
PIK3R5	23533	broad.mit.edu	37	17	8784052	8784052	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:8784052T>C	uc002glt.2	-	19	2614	c.2547A>G	c.(2545-2547)CCA>CCG	p.P849P	PIK3R5_uc010vuz.1_Silent_p.P849P|PIK3R5_uc002glu.3_Silent_p.P463P	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	849					platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						GCGTCTGGGGTGGTGAGGAGA	0.632												
PIK3R5	23533	broad.mit.edu	37	17	8794162	8794162	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:8794162T>C	uc002glt.2	-	7	617	c.550A>G	c.(550-552)ACG>GCG	p.T184A	PIK3R5_uc010vuz.1_Missense_Mutation_p.T184A|PIK3R5_uc002glu.3_Intron|PIK3R5_uc010coa.1_Missense_Mutation_p.T184A|PIK3R5_uc010cob.1_5'UTR	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	184					platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						TGTCCGGGCGTACTCAGCTTA	0.647												
RCVRN	5957	broad.mit.edu	37	17	9808152	9808152	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:9808152T>C	uc002gme.1	-	1	533	c.346A>G	c.(346-348)ACC>GCC	p.T116A		NM_002903	NP_002894	P35243	RECO_HUMAN	recoverin	116	EF-hand 3.|2; high affinity (By similarity).				visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						TTGCTGATGGTCCCGTTACCG	0.632												
MYH13	8735	broad.mit.edu	37	17	10247249	10247249	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:10247249C>T	uc002gmk.1	-	16	1852	c.1762G>A	c.(1762-1764)GTG>ATG	p.V588M	MYH13_uc010vvf.1_Missense_Mutation_p.V263M	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	588	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TTGTAGTCCACGGTGCCGGCA	0.552												
MYH13	8735	broad.mit.edu	37	17	10263318	10263318	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:10263318T>C	uc002gmk.1	-	7	694	c.604A>G	c.(604-606)ACC>GCC	p.T202A		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	202	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TTGTCCCCGGTAACTGCAATT	0.493												
MYH4	4622	broad.mit.edu	37	17	10356187	10356187	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:10356187T>C	uc002gmn.2	-	25	3285	c.3174A>G	c.(3172-3174)AAA>AAG	p.K1058K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1058	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CACCCTCCAGTTTTCTCTTGG	0.338												
MYH3	4621	broad.mit.edu	37	17	10545866	10545866	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:10545866T>C	uc002gmq.1	-	15	1833	c.1756A>G	c.(1756-1758)ACC>GCC	p.T586A		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	586	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TAGTCCACGGTGCCCGCATAG	0.552												
DNAH9	1770	broad.mit.edu	37	17	11672478	11672478	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:11672478T>C	uc002gne.2	+	38	7452	c.7384T>C	c.(7384-7386)TAC>CAC	p.Y2462H	DNAH9_uc010coo.2_Missense_Mutation_p.Y1756H	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2462	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCGTGTGTGCTACTTCATGGA	0.612												
MYOCD	93649	broad.mit.edu	37	17	12639545	12639545	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:12639545G>A	uc002gnn.2	+	6	782	c.483G>A	c.(481-483)GGG>GGA	p.G161G	MYOCD_uc002gno.2_Silent_p.G161G|MYOCD_uc002gnp.1_Silent_p.G65G	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	161	HDAC5-binding (By similarity).				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		GCAGCGATGGGCTTTCTCCGG	0.547												
MYOCD	93649	broad.mit.edu	37	17	12649294	12649294	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:12649294A>G	uc002gnn.2	+	9	1329	c.1030A>G	c.(1030-1032)ACC>GCC	p.T344A	MYOCD_uc002gno.2_Missense_Mutation_p.T344A|MYOCD_uc002gnp.1_Missense_Mutation_p.T248A|MYOCD_uc002gnq.2_Missense_Mutation_p.T63A	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	344					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		ACTGAGCAATACCCCCTTGTC	0.413												
ADORA2B	136	broad.mit.edu	37	17	15848647	15848647	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:15848647T>C	uc002gpd.1	+	1	417	c.85T>C	c.(85-87)TGC>CGC	p.C29R		NM_000676	NP_000667	P29275	AA2BR_HUMAN	adenosine A2b receptor	29	Helical; Name=1; (By similarity).				activation of MAPK activity|cellular defense response|excretion|JNK cascade	integral to plasma membrane				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0855)	Defibrotide(DB04932)|Enprofylline(DB00824)|Pegademase bovine(DB00061)|Theophylline(DB00277)	CGTGCTGGTGTGCGCCGCGGT	0.701												
NCOR1	9611	broad.mit.edu	37	17	15989674	15989674	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:15989674C>T	uc002gpo.2	-	23	3339	c.3099G>A	c.(3097-3099)CCG>CCA	p.P1033P	NCOR1_uc002gpn.2_Silent_p.P1049P|NCOR1_uc002gpp.1_Silent_p.P940P|NCOR1_uc002gpq.1_Silent_p.P125P	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1033	Interaction with ETO.|Poly-Pro.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TGAGAGGGGGCGGTGGCCTGG	0.483												
TRPV2	51393	broad.mit.edu	37	17	16335135	16335135	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:16335135A>G	uc002gpy.2	+	11	1992	c.1625A>G	c.(1624-1626)TAC>TGC	p.Y542C	TRPV2_uc002gpz.2_Missense_Mutation_p.Y112C	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	542	Helical; (Potential).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CTTCTGATCTACTTAGTCTTC	0.622												
C17orf76	388341	broad.mit.edu	37	17	16347255	16347255	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:16347255T>C	uc010cph.1	-	4	858	c.682A>G	c.(682-684)ACC>GCC	p.T228A	C17orf76_uc002gqh.2_Missense_Mutation_p.H189R|NCRNA00188_uc010vwl.1_Intron|NCRNA00188_uc010vwm.1_Intron|NCRNA00188_uc010vwn.1_Intron|NCRNA00188_uc010cpe.2_Intron|NCRNA00188_uc010vwo.1_Intron|NCRNA00188_uc010vwp.1_Intron|C17orf76_uc002gqg.1_3'UTR	NM_001113567	NP_001107039	Q8NAA5	CQ076_HUMAN	hypothetical protein LOC388341 isoform 1	228											0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0887)		CGGGGCAGGGTGCTGAGTGCT	0.637												
ZNF624	57547	broad.mit.edu	37	17	16527608	16527608	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:16527608T>C	uc010cpi.1	-	6	675	c.592A>G	c.(592-594)ACT>GCT	p.T198A		NM_020787	NP_065838	Q9P2J8	ZN624_HUMAN	zinc finger protein 624	198					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CTTTGACTAGTGGGAGTCTTC	0.368												
COPS3	8533	broad.mit.edu	37	17	17168289	17168289	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:17168289A>G	uc002grd.2	-	6	539	c.448T>C	c.(448-450)TTG>CTG	p.L150L	COPS3_uc010vwv.1_Silent_p.L130L|COPS3_uc010vww.1_Silent_p.L20L	NM_003653	NP_003644	Q9UNS2	CSN3_HUMAN	COP9 constitutive photomorphogenic homolog	150					cullin deneddylation|response to light stimulus|signal transduction	cytoplasm|signalosome	protein binding			skin(1)	1						TTTGCTAGCAAACAAAGCTGT	0.338												
RAI1	10743	broad.mit.edu	37	17	17712704	17712704	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:17712704G>A	uc002grm.2	+	5	6129	c.5660G>A	c.(5659-5661)GGT>GAT	p.G1887D		NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1887	PHD-type.					cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		TTGGTCACAGGTTGCATATTC	0.557												
TOM1L2	146691	broad.mit.edu	37	17	17764788	17764788	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:17764788A>G	uc002grz.3	-	12	1435	c.1278_splice	c.e12+1	p.G426_splice	TOM1L2_uc002gry.3_Splice_Site_p.G376_splice|TOM1L2_uc010vwy.1_Splice_Site_p.G373_splice|TOM1L2_uc010cpr.2_Splice_Site_p.G381_splice|TOM1L2_uc010vwz.1_Splice_Site_p.G278_splice|TOM1L2_uc010vxa.1_Splice_Site_p.G328_splice|TOM1L2_uc002grv.3_Splice_Site_p.G159_splice	NM_001082968	NP_001076437	Q6ZVM7	TM1L2_HUMAN	target of myb1-like 2 isoform 3						intracellular protein transport	intracellular					0	all_neural(463;0.228)					TTAAAGACCTACCCCTTCTGA	0.498												
LRRC48	83450	broad.mit.edu	37	17	17891390	17891390	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:17891390A>G	uc010vxd.1	+	6	801	c.422A>G	c.(421-423)AAC>AGC	p.N141S	LRRC48_uc002gsa.2_Missense_Mutation_p.N141S|LRRC48_uc010vxc.1_Missense_Mutation_p.N141S|LRRC48_uc002gsb.2_Missense_Mutation_p.N141S	NM_001130090	NP_001123562	Q9H069	LRC48_HUMAN	leucine rich repeat containing 48 isoform a	141	LRR 5.					cytoplasm				pancreas(1)	1	all_neural(463;0.228)					CTGGGCAACAACCGGATTGAC	0.592												
LRRC48	83450	broad.mit.edu	37	17	17898317	17898317	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:17898317C>T	uc010vxd.1	+	9	1095	c.716C>T	c.(715-717)GCG>GTG	p.A239V	LRRC48_uc002gsa.2_Missense_Mutation_p.A239V|LRRC48_uc010vxc.1_Missense_Mutation_p.A239V|LRRC48_uc002gsb.2_Missense_Mutation_p.A239V|LRRC48_uc010vxe.1_5'Flank	NM_001130090	NP_001123562	Q9H069	LRC48_HUMAN	leucine rich repeat containing 48 isoform a	239	Potential.					cytoplasm				pancreas(1)	1	all_neural(463;0.228)					CTGCAGACTGCGTTTGTGGAA	0.483												
DRG2	1819	broad.mit.edu	37	17	18005257	18005257	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:18005257T>C	uc002gsh.1	+	9	807	c.752T>C	c.(751-753)ATC>ACC	p.I251T	DRG2_uc002gsi.1_RNA|DRG2_uc002gsj.1_Missense_Mutation_p.I251T	NM_001388	NP_001379	P55039	DRG2_HUMAN	developmentally regulated GTP binding protein 2	251					signal transduction		GTP binding			ovary(1)	1	all_neural(463;0.228)					ATCGACCAGATCTCCATGGAA	0.577												
DRG2	1819	broad.mit.edu	37	17	18010553	18010553	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:18010553A>G	uc002gsh.1	+	13	1149	c.1094A>G	c.(1093-1095)TAA>TGA	p.*365*	DRG2_uc002gsi.1_RNA|DRG2_uc002gsj.1_3'UTR|MYO15A_uc010vxh.1_5'Flank	NM_001388	NP_001379	P55039	DRG2_HUMAN	developmentally regulated GTP binding protein 2	365					signal transduction		GTP binding			ovary(1)	1	all_neural(463;0.228)					GTGAAGAAGTAACGGCGCCTG	0.602												
MYO15A	51168	broad.mit.edu	37	17	18043900	18043900	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:18043900G>A	uc010vxh.1	+	19	5619	c.5281G>A	c.(5281-5283)GTC>ATC	p.V1761I		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1761	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GAGCAGCTCCGTCACTCGGCT	0.652											OREG0024223	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
FLII	2314	broad.mit.edu	37	17	18148506	18148506	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:18148506G>A	uc002gsr.1	-	30	3807	c.3756C>T	c.(3754-3756)CAC>CAT	p.H1252H	FLII_uc002gsq.1_Silent_p.H1123H|FLII_uc010cpy.1_Silent_p.H1241H|FLII_uc010vxn.1_Silent_p.H1221H|FLII_uc010vxo.1_Silent_p.H1197H	NM_002018	NP_002009	Q13045	FLII_HUMAN	flightless I homolog	1252					multicellular organismal development|muscle contraction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	actin binding			central_nervous_system(1)|skin(1)	2	all_neural(463;0.228)					GGGTAAAGGCGTGCTGCTCAT	0.652												
TOP3A	7156	broad.mit.edu	37	17	18181368	18181368	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:18181368G>A	uc002gsx.1	-	18	2677	c.2448C>T	c.(2446-2448)GGC>GGT	p.G816G	TOP3A_uc010cpz.1_Silent_p.G268G|TOP3A_uc010vxr.1_Silent_p.G346G|TOP3A_uc002gsw.1_Silent_p.G268G|TOP3A_uc010vxs.1_Silent_p.G714G	NM_004618	NP_004609	Q13472	TOP3A_HUMAN	topoisomerase (DNA) III alpha	816	1.|2 X 27 AA approximate repeats.				DNA topological change|meiosis	chromosome|PML body	ATP binding|DNA topoisomerase type I activity|protein binding|zinc ion binding			skin(3)	3						CAGCCTCCTGGCCACAGTTGC	0.607												
CCDC144B	284047	broad.mit.edu	37	17	18483886	18483886	+	RNA	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:18483886A>T	uc002gua.3	-	12		c.2540T>A								Homo sapiens cDNA FLJ36492 fis, clone THYMU2018455.											ovary(1)|skin(1)	2						TGCAATTTTCATGAAAGAGAT	0.328												
TBC1D28	254272	broad.mit.edu	37	17	18542507	18542507	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:18542507A>G	uc002gud.2	-	6	591	c.179T>C	c.(178-180)GTC>GCC	p.V60A		NM_001039397	NP_001034486	Q2M2D7	TBC28_HUMAN	TBC1 domain family, member 28	60						intracellular	Rab GTPase activator activity			ovary(1)	1						CAGGGCACTGACGCGGGGCAG	0.652												
FBXW10	10517	broad.mit.edu	37	17	18673283	18673283	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:18673283G>A	uc002guk.2	+	11	2123	c.1891G>A	c.(1891-1893)GCC>ACC	p.A631T	FBXW10_uc002guj.2_Missense_Mutation_p.A631T|FBXW10_uc002gul.2_Missense_Mutation_p.A660T|FBXW10_uc010cqh.1_Intron	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	631	WD 7.									ovary(1)	1						GGTCATCAGCGCCTGTGCAGA	0.517												
FAM83G	644815	broad.mit.edu	37	17	18907282	18907282	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:18907282A>G	uc002guw.2	-	2	240	c.73T>C	c.(73-75)TTC>CTC	p.F25L	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	25										ovary(1)|central_nervous_system(1)	2						CTGTAGAAGAACTCAGGCTTG	0.662												
MAPK7	5598	broad.mit.edu	37	17	19284578	19284578	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:19284578T>C	uc002gvn.2	+	4	1442	c.1056T>C	c.(1054-1056)GAT>GAC	p.D352D	MAPK7_uc002gvo.2_Silent_p.D213D|MAPK7_uc002gvq.2_Silent_p.D352D|MAPK7_uc002gvp.2_Silent_p.D352D	NM_139033	NP_620602	Q13164	MK07_HUMAN	mitogen-activated protein kinase 7 isoform 1	352	Necessary for oligomerization (By similarity).				cell cycle|cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|protein binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9	all_cancers(12;2.87e-05)|all_epithelial(12;0.00114)|Hepatocellular(7;0.00345)|Breast(13;0.206)					AGTACCATGATCCTGATGATG	0.587												
ALDH3A2	224	broad.mit.edu	37	17	19555901	19555901	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:19555901A>G	uc002gwb.1	+	3	648	c.427A>G	c.(427-429)ACA>GCA	p.T143A	ALDH3A2_uc002gwa.1_Missense_Mutation_p.T143A|ALDH3A2_uc010cqr.1_Translation_Start_Site|ALDH3A2_uc002gwc.1_Missense_Mutation_p.T143A	NM_000382	NP_000373	P51648	AL3A2_HUMAN	aldehyde dehydrogenase 3A2 isoform 2	143	Cytoplasmic.				cellular aldehyde metabolic process|central nervous system development|epidermis development|lipid metabolic process|peripheral nervous system development	endoplasmic reticulum membrane|integral to membrane	3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(2)	2	all_cancers(12;1.39e-05)|all_epithelial(12;0.00158)|Breast(13;0.245)				NADH(DB00157)	GAGTGAAAATACAGCCAAGAT	0.333												
C17orf103	256302	broad.mit.edu	37	17	21147535	21147535	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:21147535A>C	uc010vzx.1	-	3	111	c.109T>G	c.(109-111)TGT>GGT	p.C37G		NM_152914	NP_690878	Q8N6N6	GTL3B_HUMAN	transcript expressed during hematopoiesis 2	37											0						CGGTCATGACATCCTGGGGGT	0.617												
TNFAIP1	7126	broad.mit.edu	37	17	26671585	26671585	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:26671585G>A	uc002hax.1	+	7	929	c.910G>A	c.(910-912)GAT>AAT	p.D304N	TNFAIP1_uc002hay.2_Missense_Mutation_p.D304N|TNFAIP1_uc010waf.1_Missense_Mutation_p.D200N	NM_021137	NP_066960	Q13829	BACD2_HUMAN	tumor necrosis factor, alpha-induced protein 1	304					apoptosis|cell migration|DNA replication|embryo development|immune response|negative regulation of Rho protein signal transduction|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|endosome|nucleus|voltage-gated potassium channel complex	GTP-Rho binding|voltage-gated potassium channel activity				0	all_lung(13;0.000294)|Lung NSC(42;0.000964)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)		CAGCACTTACGATGACCGGCA	0.637												
VTN	7448	broad.mit.edu	37	17	26695960	26695960	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:26695960G>A	uc002hbc.2	-	5	908	c.759C>T	c.(757-759)AAC>AAT	p.N253N	SARM1_uc010wah.1_Intron|SEBOX_uc010crk.1_5'Flank|SARM1_uc010waj.1_Intron	NM_000638	NP_000629	P04004	VTNC_HUMAN	vitronectin precursor	253					cell adhesion mediated by integrin|immune response|negative regulation of endopeptidase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein binding|positive regulation of receptor-mediated endocytosis|positive regulation of smooth muscle cell migration|positive regulation of vascular endothelial growth factor receptor signaling pathway|smooth muscle cell-matrix adhesion	alphav-beta3 integrin-vitronectin complex|extracellular space	heparin binding|integrin binding|scavenger receptor activity			ovary(1)|kidney(1)	2	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Urokinase(DB00013)	CTGCATCCACGTTGTCCGGGA	0.592												
VTN	7448	broad.mit.edu	37	17	26697198	26697198	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:26697198T>C	uc002hbc.2	-	1	176	c.27A>G	c.(25-27)ATA>ATG	p.I9M	SARM1_uc010wah.1_Intron|SEBOX_uc010crk.1_5'Flank|SARM1_uc010waj.1_Intron|SARM1_uc010crl.1_5'Flank	NM_000638	NP_000629	P04004	VTNC_HUMAN	vitronectin precursor	9					cell adhesion mediated by integrin|immune response|negative regulation of endopeptidase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein binding|positive regulation of receptor-mediated endocytosis|positive regulation of smooth muscle cell migration|positive regulation of vascular endothelial growth factor receptor signaling pathway|smooth muscle cell-matrix adhesion	alphav-beta3 integrin-vitronectin complex|extracellular space	heparin binding|integrin binding|scavenger receptor activity			ovary(1)|kidney(1)	2	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Urokinase(DB00013)	GCAGGGCCAGTATGAGAAGGG	0.617												
ALDOC	230	broad.mit.edu	37	17	26900951	26900951	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:26900951T>C	uc002hbp.2	-	8	946	c.801A>G	c.(799-801)GGA>GGG	p.G267G	PIGS_uc002hbn.2_5'Flank|PIGS_uc002hbo.2_5'Flank|PIGS_uc010wap.1_5'Flank|ALDOC_uc010cro.2_Silent_p.G239G	NM_005165	NP_005156	P09972	ALDOC_HUMAN	fructose-bisphosphate aldolase C	267					fructose 1,6-bisphosphate metabolic process|gluconeogenesis|glycolysis	cytosol	cytoskeletal protein binding|fructose-bisphosphate aldolase activity			ovary(1)	1	Lung NSC(42;0.00431)					GGAAGGTCACTCCTAGTGTGG	0.547												
KIAA0100	9703	broad.mit.edu	37	17	26962262	26962262	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:26962262A>G	uc002hbu.2	-	16	2442	c.2343T>C	c.(2341-2343)AGT>AGC	p.S781S		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	781						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					AGTTGAAGATACTATTGCCAT	0.572												
SUPT6H	6830	broad.mit.edu	37	17	27011678	27011678	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:27011678C>T	uc002hby.2	+	18	2394	c.2304C>T	c.(2302-2304)GAC>GAT	p.D768D	SUPT6H_uc010crt.2_Silent_p.D768D	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	768					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					AAGAAGATGACGACTTTATGG	0.517												
SUPT6H	6830	broad.mit.edu	37	17	27014226	27014226	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:27014226A>G	uc002hby.2	+	22	2911	c.2821A>G	c.(2821-2823)AAG>GAG	p.K941E	SUPT6H_uc010crt.2_Missense_Mutation_p.K941E|SUPT6H_uc002hbz.1_5'Flank	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	941					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					CCTGTGTCTCAAGTTTCACCC	0.562												
SUPT6H	6830	broad.mit.edu	37	17	27016471	27016471	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:27016471A>G	uc002hby.2	+	25	3324	c.3234A>G	c.(3232-3234)GAA>GAG	p.E1078E	SUPT6H_uc010crt.2_Silent_p.E1078E|SUPT6H_uc002hbz.1_Silent_p.E10E	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1078					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					AATACGATGAATCAGCCGAGG	0.512												
FLOT2	2319	broad.mit.edu	37	17	27208887	27208887	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:27208887G>A	uc002hdc.2	-	8	982	c.859C>T	c.(859-861)CGC>TGC	p.R287C		NM_004475	NP_004466	Q14254	FLOT2_HUMAN	flotillin 2	287					cell adhesion|epidermis development	cell surface|endocytic vesicle|endosome|membrane fraction					0	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;3.26e-06)|all cancers(11;1.76e-05)|BRCA - Breast invasive adenocarcinoma(11;0.00015)|OV - Ovarian serous cystadenocarcinoma(11;0.0602)			GCAGGCCGGCGCACTGTAGCG	0.617												
TIAF1	9220	broad.mit.edu	37	17	27400961	27400961	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:27400961T>C	uc002hdv.1	-	1	1667	c.257A>G	c.(256-258)CAG>CGG	p.Q86R	MYO18A_uc010wbc.1_3'UTR|MYO18A_uc002hds.2_3'UTR|MYO18A_uc010csa.1_3'UTR|MYO18A_uc002hdt.1_3'UTR|MYO18A_uc002hdu.1_3'UTR	NM_004740	NP_004731	O95411	TIAF1_HUMAN	TGFB1-induced anti-apoptotic factor 1	86					anti-apoptosis|apoptosis|I-kappaB kinase/NF-kappaB cascade	nucleus					0	Lung NSC(42;0.015)		Epithelial(11;1.19e-05)|all cancers(11;6.57e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000153)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			AGCCCTGAACTGCTGTAGTTG	0.542												
MYO18A	399687	broad.mit.edu	37	17	27425890	27425890	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:27425890G>A	uc002hdt.1	-	23	3892	c.3734C>T	c.(3733-3735)CCC>CTC	p.P1245L	MYO18A_uc010wbc.1_Missense_Mutation_p.P787L|MYO18A_uc002hds.2_Missense_Mutation_p.P787L|MYO18A_uc010csa.1_Missense_Mutation_p.P1245L|MYO18A_uc002hdu.1_Missense_Mutation_p.P1245L|MYO18A_uc010wbd.1_Missense_Mutation_p.P914L	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	1245					anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			TTCGATGAGGGGCCTCACTGT	0.542												
TAOK1	57551	broad.mit.edu	37	17	27802738	27802738	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:27802738T>C	uc002hdz.1	+	4	449	c.255T>C	c.(253-255)CAT>CAC	p.H85H	TAOK1_uc010wbe.1_Silent_p.H85H|TAOK1_uc010wbf.1_Silent_p.H85H	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	85	Protein kinase.				mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			GAATAAAACATCCCAACAGTA	0.358												
EFCAB5	374786	broad.mit.edu	37	17	28417508	28417508	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:28417508A>G	uc002het.2	+	20	3945	c.3753A>G	c.(3751-3753)ATA>ATG	p.I1251M	EFCAB5_uc010cse.2_Missense_Mutation_p.I1006M|EFCAB5_uc010csf.2_Intron	NM_198529	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5 isoform a	1251							calcium ion binding			ovary(1)|skin(1)	2						AAACGCATATAGTAGTTCCAC	0.403												
SLC6A4	6532	broad.mit.edu	37	17	28542674	28542674	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:28542674A>G	uc002hey.3	-	8	1575	c.1031T>C	c.(1030-1032)CTG>CCG	p.L344P		NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	344	Helical; Name=6; (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	AAAAGCCAGCAGGACCCCAAA	0.542												
SLC6A4	6532	broad.mit.edu	37	17	28545342	28545342	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:28545342G>T	uc002hey.3	-	5	1036	c.492C>A	c.(490-492)GCC>GCA	p.A164A		NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	164	Helical; Name=3; (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	TGATGCAGATGGCATAACCAA	0.557												
GOSR1	9527	broad.mit.edu	37	17	28804459	28804459	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:28804459C>T	uc002hfe.2	+	1	34	c.8C>T	c.(7-9)GCA>GTA	p.A3V	GOSR1_uc002hfd.2_Missense_Mutation_p.A3V|GOSR1_uc002hff.2_5'UTR|GOSR1_uc002hfc.1_Missense_Mutation_p.A3V	NM_004871	NP_004862	O95249	GOSR1_HUMAN	golgi SNAP receptor complex member 1 isoform 1	3	Cytoplasmic (Potential).				intra-Golgi vesicle-mediated transport|protein transport|retrograde transport, endosome to Golgi	Golgi membrane|integral to membrane|SNARE complex	SNAP receptor activity				0						AAGATGGCGGCAGGGACCAGC	0.627											OREG0024301	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
C17orf42	79736	broad.mit.edu	37	17	29231314	29231314	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:29231314G>A	uc002hfu.2	-	2	335	c.265C>T	c.(265-267)CGA>TGA	p.R89*	C17orf42_uc002hfv.2_RNA|C17orf42_uc002hfw.2_Nonsense_Mutation_p.R89*|C17orf42_uc010wbs.1_Nonsense_Mutation_p.R89*	NM_024683	NP_078959	Q96QE5	TEFM_HUMAN	hypothetical protein LOC79736	89					oxidative phosphorylation|regulation of transcription, DNA-dependent|transcription from mitochondrial promoter	mitochondrial nucleoid|ribonucleoprotein complex	DNA polymerase processivity factor activity|nucleic acid binding|protein binding			ovary(1)	1		all_cancers(10;4.64e-07)|all_hematologic(16;0.014)|Acute lymphoblastic leukemia(14;0.0236)|Myeloproliferative disorder(56;0.0255)				CGAAGCAATCGGAAAGCTTCA	0.418												
NF1	4763	broad.mit.edu	37	17	29550514	29550514	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:29550514A>G	uc002hgg.2	+	16	2107	c.1774A>G	c.(1774-1776)AGT>GGT	p.S592G	NF1_uc002hgh.2_Missense_Mutation_p.S592G|NF1_uc010csn.1_Missense_Mutation_p.S452G|NF1_uc002hgi.1_5'Flank	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	592					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TCAAATGCTTAGTAGCACAGA	0.308			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)		
NF1	4763	broad.mit.edu	37	17	29559874	29559874	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:29559874A>G	uc002hgg.2	+	26	3804	c.3471A>G	c.(3469-3471)GTA>GTG	p.V1157V	NF1_uc002hgh.2_Silent_p.V1157V|NF1_uc010csn.1_Silent_p.V1017V|NF1_uc002hgi.1_Silent_p.V190V	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1157					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ATGCCAACGTAGACAGTGGTC	0.448			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)		
NF1	4763	broad.mit.edu	37	17	29701123	29701123	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:29701123C>T	uc002hgg.2	+	58	8803	c.8470C>T	c.(8470-8472)CAA>TAA	p.Q2824*	NF1_uc002hgh.2_Nonsense_Mutation_p.Q2803*|NF1_uc010cso.2_Nonsense_Mutation_p.Q1030*|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2824					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AGTGCAGAAGCAAAGAAGCGC	0.463			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)		
UTP6	55813	broad.mit.edu	37	17	30190399	30190399	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:30190399C>T	uc002hgr.2	-	19	1856	c.1773G>A	c.(1771-1773)ATG>ATA	p.M591I	UTP6_uc002hgq.2_Missense_Mutation_p.M407I|UTP6_uc010cst.2_Missense_Mutation_p.M440I	NM_018428	NP_060898	Q9NYH9	UTP6_HUMAN	hepatocellular carcinoma-associated antigen 66	591					rRNA processing	nucleolus	binding			ovary(1)	1		all_hematologic(16;0.0149)|Ovarian(249;0.021)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|Breast(31;0.231)				CAGTCTGATGCATAGCATGTT	0.453												
MYO1D	4642	broad.mit.edu	37	17	30986329	30986329	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:30986329G>A	uc002hho.1	-	17	2161	c.2149C>T	c.(2149-2151)CGG>TGG	p.R717W	MYO1D_uc002hhp.1_Missense_Mutation_p.R717W	NM_015194	NP_056009	O94832	MYO1D_HUMAN	myosin ID	717	IQ 1.					myosin complex	actin binding|ATP binding|calmodulin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3			BRCA - Breast invasive adenocarcinoma(9;0.0362)			CTTTTGTACCGCATGCGGGCC	0.507											OREG0024311	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
TMEM98	26022	broad.mit.edu	37	17	31260324	31260324	+	Splice_Site	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:31260324G>A	uc002hhq.2	+	4	721	c.263_splice	c.e4+1	p.S88_splice	TMEM98_uc002hhr.2_Splice_Site_p.S88_splice	NM_015544	NP_056359	Q9Y2Y6	TMM98_HUMAN	transmembrane protein 98							endoplasmic reticulum|integral to membrane					0		Ovarian(249;0.182)|Breast(31;0.244)	BRCA - Breast invasive adenocarcinoma(9;0.0769)			AAGATGCCTCGTAAGGCCATG	0.517												
ACCN1	40	broad.mit.edu	37	17	31438937	31438937	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:31438937G>A	uc002hhu.2	-	2	978	c.704C>T	c.(703-705)ACA>ATA	p.T235I	ACCN1_uc002hht.2_Missense_Mutation_p.T286I	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	235	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	CAGCTCACCTGTCTCTCCCCA	0.617												
C17orf102	400591	broad.mit.edu	37	17	32904605	32904605	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:32904605C>A	uc002hie.1	-	2	534	c.445G>T	c.(445-447)GTA>TTA	p.V149L		NM_207454	NP_997337	A2RUQ5	CQ102_HUMAN	hypothetical protein LOC400591	149										ovary(1)	1						gttgtacctacaatgcctgTG	0.234												
FNDC8	54752	broad.mit.edu	37	17	33448908	33448908	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:33448908A>G	uc002hix.2	+	1	278	c.196A>G	c.(196-198)ACC>GCC	p.T66A	RFFL_uc002hiq.2_5'Flank|RAD51L3_uc002hir.2_5'Flank|RAD51L3_uc010wcd.1_5'Flank|RAD51L3_uc002his.2_5'Flank|RAD51L3_uc010ctk.2_5'Flank|RAD51L3_uc010wce.1_5'Flank|RAD51L3_uc002hit.2_5'Flank|RAD51L3_uc002hiu.2_5'Flank|RAD51L3_uc010wcf.1_5'Flank|RAD51L3_uc002hiw.1_5'Flank|RAD51L3_uc002hiv.1_5'Flank|RAD51L3_uc010ctl.1_5'Flank|RAD51L3_uc010ctm.1_5'Flank	NM_017559	NP_060029	Q8TC99	FNDC8_HUMAN	fibronectin type III domain containing 8	66										ovary(2)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.022)		GGAGGATGATACCATCAACCT	0.299												
NLE1	54475	broad.mit.edu	37	17	33467011	33467011	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:33467011G>T	uc002hiy.1	-	3	265	c.237C>A	c.(235-237)TCC>TCA	p.S79S	NLE1_uc010ctn.1_5'UTR|NLE1_uc002hiz.1_5'UTR	NM_018096	NP_060566	Q9NVX2	NLE1_HUMAN	Notchless gene homolog isoform a	79						nucleolus				breast(3)|ovary(1)	4		Ovarian(249;0.17)				CCACTGCCTGGGACTCCAACG	0.557												
SLFN12	55106	broad.mit.edu	37	17	33738930	33738930	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:33738930T>C	uc002hji.3	-	4	1541	c.1164A>G	c.(1162-1164)ATA>ATG	p.I388M	SLFN12_uc002hjj.3_Missense_Mutation_p.I388M|SLFN12_uc010cts.2_Missense_Mutation_p.I388M	NM_018042	NP_060512	Q8IYM2	SLN12_HUMAN	schlafen family member 12	388							ATP binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GAGTATACGTTATCCTTCCTG	0.274												
SLFN13	146857	broad.mit.edu	37	17	33768197	33768197	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:33768197T>C	uc002hjk.1	-	4	2441	c.2111A>G	c.(2110-2112)TAC>TGC	p.Y704C	SLFN13_uc010wch.1_Missense_Mutation_p.Y704C|SLFN13_uc002hjl.2_Missense_Mutation_p.Y704C|SLFN13_uc010ctt.2_Missense_Mutation_p.Y386C|SLFN13_uc002hjm.2_Missense_Mutation_p.Y373C	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	704						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GGTCTGAAAGTAGTCCAGAAA	0.473												
SLFN13	146857	broad.mit.edu	37	17	33770835	33770835	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:33770835C>T	uc002hjk.1	-	2	1501	c.1171G>A	c.(1171-1173)GCT>ACT	p.A391T	SLFN13_uc010wch.1_Missense_Mutation_p.A391T|SLFN13_uc002hjl.2_Missense_Mutation_p.A391T|SLFN13_uc010ctt.2_Missense_Mutation_p.A73T|SLFN13_uc002hjm.2_Missense_Mutation_p.A60T	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	391						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TGTAGATCAGCTTTGTGTTCC	0.408												
MMP28	79148	broad.mit.edu	37	17	34093727	34093727	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:34093727T>C	uc002hjy.1	-	10	1614	c.1355A>G	c.(1354-1356)TAC>TGC	p.Y452C	MMP28_uc002hjw.1_RNA|MMP28_uc002hjz.1_RNA	NM_024302	NP_077278	Q9H239	MMP28_HUMAN	matrix metalloproteinase 28 isoform 1	452	Hemopexin-like 3.				proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		ACTTCGGGGGTAGTAGGGCTC	0.657												
TBC1D3B	414059	broad.mit.edu	37	17	34499221	34499221	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:34499221C>T	uc002hky.2	-	7	640	c.490G>A	c.(490-492)GGA>AGA	p.G164R	uc002hla.1_5'Flank|uc002hlc.2_5'Flank	NM_001001417	NP_001001417	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3B	164	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0		Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TACTTGGTTCCGTATCGATCC	0.572												
TBC1D3B	414059	broad.mit.edu	37	17	34499223	34499223	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:34499223T>C	uc002hky.2	-	7	638	c.488A>G	c.(487-489)TAC>TGC	p.Y163C	uc002hla.1_5'Flank|uc002hlc.2_5'Flank	NM_001001417	NP_001001417	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3B	163	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0		Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTTGGTTCCGTATCGATCCCT	0.567												
ACACA	31	broad.mit.edu	37	17	35550328	35550328	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:35550328C>T	uc002hnm.2	-	36	4267	c.4076G>A	c.(4075-4077)CGA>CAA	p.R1359Q	ACACA_uc002hnk.2_Missense_Mutation_p.R1281Q|ACACA_uc002hnl.2_Missense_Mutation_p.R1301Q|ACACA_uc002hnn.2_Missense_Mutation_p.R1359Q|ACACA_uc002hno.2_Missense_Mutation_p.R1396Q|ACACA_uc010cuy.2_Missense_Mutation_p.R53Q	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1359					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	ATCCCTTGCTCGGAATGTAAA	0.338												
SYNRG	11276	broad.mit.edu	37	17	35880674	35880674	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:35880674T>A	uc002hoa.2	-	20	3827	c.3744A>T	c.(3742-3744)GGA>GGT	p.G1248G	SYNRG_uc010wde.1_Silent_p.G1193G|SYNRG_uc010wdf.1_Silent_p.G1170G|SYNRG_uc002hoc.2_Silent_p.G1169G|SYNRG_uc002hoe.2_Silent_p.G1170G|SYNRG_uc002hod.2_Silent_p.G1125G|SYNRG_uc010wdg.1_Silent_p.G1042G|SYNRG_uc002hob.2_Silent_p.G1248G	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	1248					endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						AGAGGCACACTCCACAGGCAA	0.512												
SYNRG	11276	broad.mit.edu	37	17	35902351	35902351	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:35902351A>G	uc002hoa.2	-	15	3008	c.2925T>C	c.(2923-2925)AGT>AGC	p.S975S	SYNRG_uc010wde.1_Silent_p.S897S|SYNRG_uc010wdf.1_Silent_p.S897S|SYNRG_uc002hoc.2_Silent_p.S896S|SYNRG_uc002hoe.2_Silent_p.S897S|SYNRG_uc002hod.2_Silent_p.S852S|SYNRG_uc010wdg.1_Silent_p.S769S|SYNRG_uc002hob.2_Silent_p.S975S|SYNRG_uc002hof.2_Silent_p.S641S	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	975					endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						CCTTTTGCTCACTGGTCTGAG	0.488												
GPR179	440435	broad.mit.edu	37	17	36483989	36483989	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:36483989C>A	uc002hpz.2	-	11	5484	c.5463G>T	c.(5461-5463)GAG>GAT	p.E1821D		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1821	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CTTCACTTACCTCCCAGGGAC	0.532												
MLLT6	4302	broad.mit.edu	37	17	36864113	36864113	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:36864113T>C	uc002hqi.3	+	4	355	c.342T>C	c.(340-342)GAT>GAC	p.D114D	MLLT6_uc010wdr.1_Silent_p.D114D|MLLT6_uc010cvm.1_Silent_p.D114D	NM_005937	NP_005928	P55198	AF17_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	114					regulation of transcription, DNA-dependent	nucleus	protein binding|zinc ion binding			breast(3)|prostate(1)|lung(1)|skin(1)	6	Breast(7;4.43e-21)					TGCCTCATGATCGCTTCAACA	0.582			T	MLL	AL							
FBXL20	84961	broad.mit.edu	37	17	37420479	37420479	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:37420479T>C	uc010wed.1	-	14	1373	c.1152A>G	c.(1150-1152)ATA>ATG	p.I384M	FBXL20_uc002hrt.2_Missense_Mutation_p.I384M|FBXL20_uc010cvu.2_Missense_Mutation_p.I352M	NM_032875	NP_116264	Q96IG2	FXL20_HUMAN	F-box and leucine-rich repeat protein 20	384	LRR 12.					cytoplasm				ovary(1)	1			LUAD - Lung adenocarcinoma(14;0.146)			CATAGAGTTCTATCCGCTCAA	0.498												
CDK12	51755	broad.mit.edu	37	17	37627217	37627217	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:37627217C>T	uc010cvv.2	+	2	1718	c.1132C>T	c.(1132-1134)CGC>TGC	p.R378C	CDK12_uc010wef.1_Missense_Mutation_p.R377C|CDK12_uc002hrw.3_Missense_Mutation_p.R378C	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	378					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						ATCCAGTTCACGCAGTCGTCA	0.423										TCGA Ovarian(9;0.13)		
PNMT	5409	broad.mit.edu	37	17	37826227	37826227	+	Missense_Mutation	SNP	G	G	A	rs150323544		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:37826227G>A	uc002hsi.1	+	3	656	c.434G>A	c.(433-435)CGC>CAC	p.R145H		NM_002686	NP_002677	P11086	PNMT_HUMAN	phenylethanolamine N-methyltransferase	145					catecholamine biosynthetic process|hormone biosynthetic process	cytosol	phenylethanolamine N-methyltransferase activity			ovary(1)	1	all_cancers(6;6.59e-85)|all_epithelial(6;2.89e-103)|Breast(7;1.05e-86)|Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;3.87e-45)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GATAAGGAGCGCCAGCTGCGA	0.662												
MED24	9862	broad.mit.edu	37	17	38179049	38179049	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:38179049T>C	uc002htt.2	-	21	2594	c.2281A>G	c.(2281-2283)ACG>GCG	p.T761A	MED24_uc010weq.1_5'Flank|MED24_uc002htr.2_5'Flank|MED24_uc010wer.1_Missense_Mutation_p.T96A|MED24_uc010wes.1_Missense_Mutation_p.T621A|MED24_uc010wet.1_Intron|MED24_uc002hts.2_Missense_Mutation_p.T786A|MED24_uc002htu.2_Missense_Mutation_p.T748A|MED24_uc010cwn.2_Missense_Mutation_p.T748A|MED24_uc010weu.1_Missense_Mutation_p.T671A|MED24_uc010wev.1_Missense_Mutation_p.T711A	NM_014815	NP_055630	O75448	MED24_HUMAN	mediator complex subunit 24 isoform 1	761					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)	1	Colorectal(19;0.000442)					GCCCGCAGCGTGTGCTCCTTC	0.642												
THRA	7067	broad.mit.edu	37	17	38240097	38240097	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:38240097C>T	uc002htw.2	+	5	715	c.232C>T	c.(232-234)CGC>TGC	p.R78C	THRA_uc010cwp.1_Missense_Mutation_p.R78C|THRA_uc002htv.2_Missense_Mutation_p.R78C|THRA_uc002htx.2_Missense_Mutation_p.R78C	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	78	Nuclear receptor.				negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	GGGCTTCTTTCGCCGCACAAT	0.552												
RAPGEFL1	51195	broad.mit.edu	37	17	38345469	38345469	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:38345469G>A	uc010cwu.1	+	6	828	c.338G>A	c.(337-339)CGT>CAT	p.R113H	RAPGEFL1_uc010wfd.1_Missense_Mutation_p.R49H	NM_016339	NP_057423	Q9UHV5	RPGFL_HUMAN	Rap guanine nucleotide exchange factor	319					G-protein coupled receptor protein signaling pathway|nervous system development|small GTPase mediated signal transduction	intracellular|membrane fraction	guanyl-nucleotide exchange factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GTCTTCTGCCGTGTATACATG	0.527												
KRT25	147183	broad.mit.edu	37	17	38904579	38904579	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:38904579T>C	uc002hve.2	-	8	1364	c.1303A>G	c.(1303-1305)ATA>GTA	p.I435V		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	435	Tail.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				GTGGTAAGTATTTTGCTGCGT	0.413												
KRT27	342574	broad.mit.edu	37	17	38933833	38933833	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:38933833A>G	uc002hvg.2	-	6	1165	c.1124T>C	c.(1123-1125)CTT>CCT	p.L375P		NM_181537	NP_853515	Q7Z3Y8	K1C27_HUMAN	keratin 27	375	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.000812)				CTTGATGTCAAGGAGCTGCTC	0.532												
KRT28	162605	broad.mit.edu	37	17	38953472	38953472	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:38953472G>A	uc002hvh.1	-	4	818	c.752C>T	c.(751-753)CCG>CTG	p.P251L		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	251	Rod.|Linker 12.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				GTCTACCCCCGGGGCCGCGTT	0.597												
KRT28	162605	broad.mit.edu	37	17	38955785	38955785	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:38955785A>G	uc002hvh.1	-	1	427	c.361T>C	c.(361-363)TGG>CGG	p.W121R		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	121	Rod.|Coil 1A.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				TTTTCATACCAACCCTTGATT	0.423												
KRT12	3859	broad.mit.edu	37	17	39019476	39019476	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:39019476T>A	uc002hvk.2	-	6	1239	c.1215A>T	c.(1213-1215)GCA>GCT	p.A405A		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	405	Rod.|Coil 2.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				TCTGGCGCTCTGCGTCCGCGC	0.672												
KRT23	25984	broad.mit.edu	37	17	39081783	39081783	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:39081783T>C	uc002hvm.1	-	7	1554	c.965A>G	c.(964-966)TAC>TGC	p.Y322C	KRT23_uc010wfl.1_Missense_Mutation_p.Y185C|KRT23_uc010cxf.1_Missense_Mutation_p.Y109C|KRT23_uc010cxg.2_Missense_Mutation_p.Y322C	NM_015515	NP_056330	Q9C075	K1C23_HUMAN	keratin 23	322	Rod.|Coil 2.			Y -> N (in Ref. 1; AAK00050).		intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)|Ovarian(249;0.15)				CTTGCAGGAGTACCGAGACTG	0.448												
KRTAP9-8	83901	broad.mit.edu	37	17	39394461	39394461	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:39394461A>G	uc002hwh.3	+	1	192	c.158A>G	c.(157-159)CAA>CGA	p.Q53R	KRTAP9-9_uc010wfq.1_Intron	NM_031963	NP_114169	Q9BYQ0	KRA98_HUMAN	keratin associated protein 9.8	53	6.|15 X 5 AA repeats of C-C-[RQVSGE]- [SPSNQ]-[TASPI].					keratin filament				ovary(1)	1		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000397)			ACTTGCTGTCAAAACACCTGC	0.632												
KRT33A	3883	broad.mit.edu	37	17	39504875	39504875	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:39504875A>G	uc002hwk.1	-	3	485	c.448T>C	c.(448-450)TCC>CCC	p.S150P		NM_004138	NP_004129	O76009	KT33A_HUMAN	keratin 33A	150	Rod.|Coil 1B.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				TGCCGCAGGGACAGCTCGGTC	0.592												
KRT32	3882	broad.mit.edu	37	17	39616434	39616434	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:39616434G>A	uc002hwr.2	-	7	1336	c.1275C>T	c.(1273-1275)TGC>TGT	p.C425C		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	425	Tail.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				TGCGGGGCACGCATGGGGAGG	0.602												
KRT32	3882	broad.mit.edu	37	17	39622129	39622129	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:39622129G>T	uc002hwr.2	-	3	665	c.604C>A	c.(604-606)CTG>ATG	p.L202M		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	202	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				ATCCTGCGCAGGCCATTGATG	0.572												
KRT13	3860	broad.mit.edu	37	17	39661386	39661386	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:39661386C>T	uc002hwu.1	-	1	480	c.417G>A	c.(415-417)TGG>TGA	p.W139*	KRT13_uc002hwv.1_Nonsense_Mutation_p.W139*|KRT13_uc002hww.2_Nonsense_Mutation_p.W32*|KRT13_uc010wfr.1_Nonsense_Mutation_p.W32*|KRT13_uc010cxo.2_Nonsense_Mutation_p.W139*|KRT13_uc002hwx.1_Nonsense_Mutation_p.W127*	NM_153490	NP_705694	P13646	K1C13_HUMAN	keratin 13 isoform a	139	Coil 1A.|Rod.				epidermis development	intermediate filament	structural molecule activity			ovary(2)|skin(2)|pancreas(1)	5		Breast(137;0.000286)				GCTTCAGGTGCCAGTCACGGA	0.607												
HAP1	9001	broad.mit.edu	37	17	39883656	39883656	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:39883656T>C	uc002hxm.1	-	9	1337	c.1325A>G	c.(1324-1326)GAT>GGT	p.D442G	JUP_uc010wfs.1_Intron|HAP1_uc002hxn.1_Intron|HAP1_uc002hxo.1_Intron|HAP1_uc002hxp.1_Intron	NM_177977	NP_817084	P54257	HAP1_HUMAN	huntingtin-associated protein 1 isoform 2	442	Glu-rich.|HAP1 N-terminal.				brain development|protein localization|synaptic transmission	actin cytoskeleton	protein binding			ovary(2)	2		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			GCCCCCACAATCCATGTACTT	0.612												
JUP	3728	broad.mit.edu	37	17	39913734	39913734	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:39913734T>C	uc002hxq.2	-	12	2256	c.1979A>G	c.(1978-1980)TAC>TGC	p.Y660C	JUP_uc010wfs.1_Intron|JUP_uc002hxr.2_Missense_Mutation_p.Y660C|JUP_uc002hxs.2_Missense_Mutation_p.Y660C	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	660					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		GCGCTTCCGGTAGTCTGGGTT	0.582												
FKBP10	60681	broad.mit.edu	37	17	39973321	39973321	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:39973321A>G	uc002hxv.2	+	2	582	c.257A>G	c.(256-258)AAC>AGC	p.N86S	FKBP10_uc002hxw.1_5'Flank	NM_021939	NP_068758	Q96AY3	FKB10_HUMAN	FK506 binding protein 10 precursor	86	PPIase FKBP-type 1.				protein folding	endoplasmic reticulum lumen|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Breast(137;0.00122)		BRCA - Breast invasive adenocarcinoma(366;0.148)		TATGATCGCAACACCTTGGTG	0.612												
FKBP10	60681	broad.mit.edu	37	17	39973411	39973411	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:39973411G>A	uc002hxv.2	+	2	672	c.347G>A	c.(346-348)CGC>CAC	p.R116H	FKBP10_uc002hxw.1_5'Flank	NM_021939	NP_068758	Q96AY3	FKB10_HUMAN	FK506 binding protein 10 precursor	116	PPIase FKBP-type 1.		Missing (in OI6).		protein folding	endoplasmic reticulum lumen|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Breast(137;0.00122)		BRCA - Breast invasive adenocarcinoma(366;0.148)		GAGCGGCGACGCCTCATTGTG	0.647												
ACLY	47	broad.mit.edu	37	17	40070067	40070067	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40070067A>G	uc002hyg.2	-	2	223	c.60T>C	c.(58-60)TGT>TGC	p.C20C	ACLY_uc002hyh.2_Silent_p.C20C|ACLY_uc002hyi.2_Silent_p.C74C|ACLY_uc010wfx.1_Silent_p.C74C|ACLY_uc010wfy.1_Silent_p.C20C	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	20					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				CTGAGGTGGTACAGATGAACT	0.567												
DHX58	79132	broad.mit.edu	37	17	40263478	40263478	+	Missense_Mutation	SNP	C	C	T	rs143989971	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40263478C>T	uc002hyw.3	-	4	429	c.206G>A	c.(205-207)CGC>CAC	p.R69H	DHX58_uc002hyv.3_RNA|DHX58_uc010wgf.1_Missense_Mutation_p.R62H	NM_024119	NP_077024	Q96C10	DHX58_HUMAN	RNA helicase LGP2	69	Helicase ATP-binding.				innate immune response	cytoplasm	ATP binding|DNA binding|helicase activity|protein binding|RNA binding|zinc ion binding				0		all_cancers(22;9.73e-07)|all_epithelial(22;3.58e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		ATCCAGCATGCGCCTGAACTC	0.627												
PSMC3IP	29893	broad.mit.edu	37	17	40726185	40726185	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40726185T>C	uc002iai.2	-	4	312	c.269A>G	c.(268-270)GAT>GGT	p.D90G	PSMC3IP_uc002iaj.2_Missense_Mutation_p.D27G|PSMC3IP_uc002iak.2_Missense_Mutation_p.D90G|PSMC3IP_uc010wgn.1_Missense_Mutation_p.D11G|PSMC3IP_uc010wgo.1_Intron|PSMC3IP_uc010wgp.1_RNA	NM_016556	NP_057640	Q9P2W1	HOP2_HUMAN	PSMC3 interacting protein isoform 2	90					DNA recombination|meiosis	nucleus	DNA binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(22;0.00426)|Breast(137;0.00116)|all_epithelial(22;0.0395)		BRCA - Breast invasive adenocarcinoma(366;0.13)		GATTTTGCCATCTAGGACTTG	0.527												
TUBG2	27175	broad.mit.edu	37	17	40817819	40817819	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40817819T>C	uc010wgr.1	+	8	1073	c.817T>C	c.(817-819)TAC>CAC	p.Y273H	TUBG2_uc002iaq.2_Missense_Mutation_p.Y115H|TUBG2_uc002iar.2_Missense_Mutation_p.Y120H|TUBG2_uc002ias.2_Missense_Mutation_p.Y115H|TUBG2_uc002iap.2_Missense_Mutation_p.Y120H	NM_016437	NP_057521	Q9NRH3	TBG2_HUMAN	tubulin, gamma 2	273					G2/M transition of mitotic cell cycle|microtubule-based process|protein polymerization	cytosol	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.141)		CATGACCGGCTACACCCCGCT	0.632												
PLEKHH3	79990	broad.mit.edu	37	17	40821468	40821468	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40821468G>A	uc002iau.2	-	12	2652	c.2185C>T	c.(2185-2187)CTC>TTC	p.L729F	PLEKHH3_uc010cyl.1_Intron|PLEKHH3_uc002iat.1_RNA|PLEKHH3_uc002iav.2_RNA|PLEKHH3_uc010cym.1_Missense_Mutation_p.L90F|PLEKHH3_uc002iaw.2_3'UTR	NM_024927	NP_079203	Q7Z736	PKHH3_HUMAN	pleckstrin homology domain containing, family H	729	FERM.				signal transduction	cytoskeleton				large_intestine(1)|ovary(1)	2		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.14)		TGCAGGAGGAGCTGGCTCTCT	0.532												
CNTNAP1	8506	broad.mit.edu	37	17	40844011	40844011	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40844011T>C	uc002iay.2	+	16	2746	c.2530_splice	c.e16+2	p.T844_splice	CNTNAP1_uc010wgs.1_Splice_Site	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor						axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		AACTCAACAGTGAGCAGGCAG	0.602												
WNK4	65266	broad.mit.edu	37	17	40937399	40937399	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40937399A>G	uc002ibj.2	+	6	1396	c.1375A>G	c.(1375-1377)ATG>GTG	p.M459V	WNK4_uc010wgx.1_Missense_Mutation_p.M123V|WNK4_uc002ibk.1_Missense_Mutation_p.M231V|WNK4_uc010wgy.1_5'UTR	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	459					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		CTGGCTGCGCATGGAGGAcgc	0.607												
AOC2	314	broad.mit.edu	37	17	40997488	40997488	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40997488T>C	uc002ibu.2	+	1	880	c.845T>C	c.(844-846)GTG>GCG	p.V282A	AOC2_uc002ibt.2_Missense_Mutation_p.V282A	NM_009590	NP_033720	O75106	AOC2_HUMAN	amine oxidase, copper containing 2 isoform b	282					catecholamine metabolic process|visual perception	cytoplasm|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|electron carrier activity|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			ovary(2)	2		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		CGGTTGGAAGTGGTTAGAGTC	0.572												
IFI35	3430	broad.mit.edu	37	17	41165193	41165193	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:41165193A>G	uc010whj.1	+	3	446	c.250A>G	c.(250-252)ACC>GCC	p.T84A		NM_005533	NP_005524	P80217	IN35_HUMAN	interferon-induced protein 35	84					response to virus|type I interferon-mediated signaling pathway	nucleus	protein binding			ovary(1)	1		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.157)		TGCTCTGATCACCTTTGATGA	0.577												
MPP3	4356	broad.mit.edu	37	17	41907103	41907103	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:41907103C>T	uc002iei.3	-	7	526	c.360G>A	c.(358-360)CCG>CCA	p.P120P	MPP3_uc002ieh.2_Silent_p.P145P|MPP3_uc002iej.2_RNA|MPP3_uc010czi.1_Silent_p.P120P|MPP3_uc010wik.1_Silent_p.P145P|MPP3_uc010czj.1_3'UTR	NM_001932	NP_001923	Q13368	MPP3_HUMAN	palmitoylated membrane protein 3	120					signal transduction	cell surface|integral to plasma membrane	guanylate kinase activity			large_intestine(1)|skin(1)	2		Breast(137;0.00394)		BRCA - Breast invasive adenocarcinoma(366;0.119)		CAGGCAGAGGCGGGAGAACGG	0.562												
MPP3	4356	broad.mit.edu	37	17	41907449	41907449	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:41907449G>A	uc002iei.3	-	6	415	c.249C>T	c.(247-249)TCC>TCT	p.S83S	MPP3_uc002ieh.2_Silent_p.S108S|MPP3_uc002iej.2_RNA|MPP3_uc010czi.1_Silent_p.S83S|MPP3_uc010wik.1_Silent_p.S108S|MPP3_uc010czj.1_Silent_p.S83S	NM_001932	NP_001923	Q13368	MPP3_HUMAN	palmitoylated membrane protein 3	83	L27 2.				signal transduction	cell surface|integral to plasma membrane	guanylate kinase activity			large_intestine(1)|skin(1)	2		Breast(137;0.00394)		BRCA - Breast invasive adenocarcinoma(366;0.119)		CACTGTGCACGGAGGCGGCCT	0.627												
SLC4A1	6521	broad.mit.edu	37	17	42334882	42334882	+	Missense_Mutation	SNP	C	C	T	rs28931584		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:42334882C>T	uc002igf.3	-	13	1611	c.1462G>A	c.(1462-1464)GTG>ATG	p.V488M	SLC4A1_uc002igg.3_Missense_Mutation_p.V488M	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	488	Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		ACGCGGCCCACGATGTACTCT	0.597												
SLC25A39	51629	broad.mit.edu	37	17	42397576	42397576	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:42397576C>T	uc002ign.2	-	11	1106	c.952G>A	c.(952-954)GGA>AGA	p.G318R	SLC25A39_uc002igm.2_Missense_Mutation_p.G310R|SLC25A39_uc002igo.2_Missense_Mutation_p.G310R|SLC25A39_uc010wiw.1_Missense_Mutation_p.G295R|SLC25A39_uc010czu.2_Missense_Mutation_p.G186R	NM_001143780	NP_001137252	Q9BZJ4	S2539_HUMAN	solute carrier family 25, member 39 isoform a	318	Solcar 3.|Helical; Name=6; (Potential).				heme biosynthetic process|transport	integral to membrane|mitochondrial inner membrane				upper_aerodigestive_tract(1)	1		Prostate(33;0.0233)		BRCA - Breast invasive adenocarcinoma(366;0.189)		GCAAAGAGTCCCTTGGTGCCC	0.667												
ITGA2B	3674	broad.mit.edu	37	17	42457166	42457166	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:42457166C>T	uc002igt.1	-	18	1801	c.1769G>A	c.(1768-1770)CGG>CAG	p.R590Q	ITGA2B_uc002igu.1_Missense_Mutation_p.R71Q	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	590	Extracellular (Potential).				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	CAGCTTGTCCCGGAAGTCTGC	0.602												
GPATCH8	23131	broad.mit.edu	37	17	42476888	42476888	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:42476888G>A	uc002igw.1	-	8	2621	c.2557C>T	c.(2557-2559)CGC>TGC	p.R853C	GPATCH8_uc002igv.1_Missense_Mutation_p.R775C|GPATCH8_uc010wiz.1_Missense_Mutation_p.R775C	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	853	Ser-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		GACCTTGAGCGGCTGCGGGAA	0.547												
GPATCH8	23131	broad.mit.edu	37	17	42477017	42477017	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:42477017G>A	uc002igw.1	-	8	2492	c.2428C>T	c.(2428-2430)CGG>TGG	p.R810W	GPATCH8_uc002igv.1_Missense_Mutation_p.R732W|GPATCH8_uc010wiz.1_Missense_Mutation_p.R732W	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	810	Ser-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		GGTTGGCTCCGATGGCTAGAC	0.552												
GPATCH8	23131	broad.mit.edu	37	17	42512431	42512431	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:42512431A>G	uc002igw.1	-	5	412	c.348_splice	c.e5+1	p.K116_splice	GPATCH8_uc002igv.1_Splice_Site_p.K38_splice|GPATCH8_uc010wiz.1_Splice_Site_p.K38_splice	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8							intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		TTGTTTAAATACCTTGTACTT	0.388												
C17orf104	284071	broad.mit.edu	37	17	42745051	42745051	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:42745051A>G	uc010czv.2	+	5	1772	c.1772A>G	c.(1771-1773)AAC>AGC	p.N591S	C17orf104_uc002igy.1_Missense_Mutation_p.N425S|C17orf104_uc002igz.3_Missense_Mutation_p.N425S|C17orf104_uc010wja.1_RNA|C17orf104_uc002iha.2_Missense_Mutation_p.N425S	NM_001145080	NP_001138552	A2RUB1	CQ104_HUMAN	hypothetical protein LOC284071	591										central_nervous_system(1)	1						TTTTGTGATAACTATTCAGCT	0.363												
EFTUD2	9343	broad.mit.edu	37	17	42940176	42940176	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:42940176C>T	uc002ihn.2	-	16	1773	c.1512G>A	c.(1510-1512)GGG>GGA	p.G504G	EFTUD2_uc010wje.1_Silent_p.G469G|EFTUD2_uc010wjf.1_Silent_p.G494G	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	504						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				TCACAGGCTGCCCAGCATGAA	0.572												
HEXIM1	10614	broad.mit.edu	37	17	43227060	43227060	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:43227060A>G	uc002iig.2	+	1	2377	c.503A>G	c.(502-504)TAC>TGC	p.Y168C		NM_006460	NP_006451	O94992	HEXI1_HUMAN	hexamethylene bis-acetamide inducible 1	168	Basic region; mediates nuclear localization and interaction with 7SK snRNA and NR3C1.				negative regulation of cyclin-dependent protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	cyclin-dependent protein kinase inhibitor activity|protein binding|snRNA binding			ovary(1)	1						AAACCGTACTACAAGCTGACC	0.567											OREG0024474	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
HEXIM2	124790	broad.mit.edu	37	17	43246699	43246699	+	Silent	SNP	C	C	T	rs150581722		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:43246699C>T	uc002iih.1	+	4	623	c.384C>T	c.(382-384)CGC>CGT	p.R128R	HEXIM2_uc010daf.1_Silent_p.R150R|HEXIM2_uc002iii.1_Silent_p.R128R|HEXIM2_uc002iij.1_Silent_p.R128R|uc002iik.1_RNA	NM_144608	NP_653209	Q96MH2	HEXI2_HUMAN	hexamthylene bis-acetamide inducible 2	128					negative regulation of cyclin-dependent protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	cyclin-dependent protein kinase inhibitor activity|protein binding|snRNA binding				0						CCCGGGTCCGCGAAGAGATGT	0.627												
MAPT	4137	broad.mit.edu	37	17	44039745	44039745	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:44039745C>T	uc002ijr.3	+	2	362	c.42C>T	c.(40-42)CAC>CAT	p.H14H	MAPT_uc010dau.2_Silent_p.H14H|MAPT_uc002ijs.3_Silent_p.H14H|MAPT_uc002ijx.3_Silent_p.H14H|MAPT_uc002ijt.3_Silent_p.H14H|MAPT_uc002iju.3_Silent_p.H14H|MAPT_uc002ijv.3_Silent_p.H14H	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	14					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				TGGAAGATCACGCTGGGACGT	0.562												
WNT3	7473	broad.mit.edu	37	17	44845745	44845745	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:44845745A>G	uc002ikv.2	-	4	1128	c.1009T>C	c.(1009-1011)TGC>CGC	p.C337R		NM_030753	NP_110380	P56703	WNT3_HUMAN	wingless-type MMTV integration site family,	337					canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|cellular response to retinoic acid|dorsal/ventral axis specification|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic pattern specification|head morphogenesis|hemopoietic stem cell proliferation|inner ear morphogenesis|limb bud formation|mammary gland epithelium development|mesoderm formation|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|positive regulation of cell proliferation|Spemann organizer formation at the anterior end of the primitive streak|Wnt receptor signaling pathway, calcium modulating pathway	early endosome|extracellular space|late endosome|membrane fraction|membrane raft|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|signal transducer activity			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			ACGTAGCAGCACCAGTGGAAG	0.617												
CDC27	996	broad.mit.edu	37	17	45199935	45199935	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:45199935G>A	uc002ild.3	-	18	2394	c.2267C>T	c.(2266-2268)GCC>GTC	p.A756V	CDC27_uc002ile.3_Missense_Mutation_p.A762V|CDC27_uc002ilf.3_Missense_Mutation_p.A755V|CDC27_uc010wkp.1_Missense_Mutation_p.A695V|CDC27_uc010wkq.1_RNA	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	756	TPR 9.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						ATTCATCAGGGCGAGGTGCGT	0.363												
C17orf57	124989	broad.mit.edu	37	17	45425174	45425174	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:45425174C>T	uc002iln.2	+	9	929	c.518C>T	c.(517-519)GCA>GTA	p.A173V	C17orf57_uc002ilm.2_Intron|C17orf57_uc002ill.1_Intron|C17orf57_uc010daz.1_Intron	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	173							calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						GTGTGTGCAGCACTTCATAAA	0.308												
OSBPL7	114881	broad.mit.edu	37	17	45897450	45897450	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:45897450A>G	uc002ilx.1	-	3	291	c.88T>C	c.(88-90)TGG>CGG	p.W30R		NM_145798	NP_665741	Q9BZF2	OSBL7_HUMAN	oxysterol-binding protein-like protein 7	30					lipid transport		lipid binding				0						ACCACCTCCCACAGCTCAGAG	0.642												
SCRN2	90507	broad.mit.edu	37	17	45917722	45917722	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:45917722A>G	uc002imd.2	-	3	317	c.191T>C	c.(190-192)GTG>GCG	p.V64A	SCRN2_uc002imc.2_Missense_Mutation_p.V72A|SCRN2_uc002imf.2_Missense_Mutation_p.V64A|SCRN2_uc002ime.2_RNA	NM_138355	NP_612364	Q96FV2	SCRN2_HUMAN	secernin 2 isoform 1	64					proteolysis		dipeptidase activity			ovary(1)	1						CACCTGTTCCACTTCAATGTA	0.517												
CDK5RAP3	80279	broad.mit.edu	37	17	46058547	46058547	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:46058547T>C	uc002imr.2	+	13	1386	c.1302T>C	c.(1300-1302)ACT>ACC	p.T434T	CDK5RAP3_uc010wlc.1_Silent_p.T454T|CDK5RAP3_uc002imq.1_Silent_p.T209T|CDK5RAP3_uc002imu.2_Silent_p.T278T|CDK5RAP3_uc002ims.2_Silent_p.T347T|CDK5RAP3_uc002imv.2_Silent_p.T278T|CDK5RAP3_uc002imw.2_Silent_p.T276T|CDK5RAP3_uc002imx.2_Silent_p.T209T	NM_176096	NP_788276	Q96JB5	CK5P3_HUMAN	CDK5 regulatory subunit associated protein 3	434					brain development|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation		neuronal Cdc2-like kinase binding				0						ACCGAGTGACTGAATTCCTCC	0.577												
SNF8	11267	broad.mit.edu	37	17	47022068	47022068	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:47022068G>A	uc002ioj.2	-	1	87	c.29C>T	c.(28-30)GCC>GTC	p.A10V	SNF8_uc002iok.2_Missense_Mutation_p.A10V	NM_007241	NP_009172	Q96H20	SNF8_HUMAN	EAP30 subunit of ELL complex	10					cellular membrane organization|endosome transport|protein transport|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytosol|late endosome membrane|transcription factor complex	transcription factor binding				0						CTTGGCGATGGCGCCAGCTCC	0.547												
ZNF652	22834	broad.mit.edu	37	17	47394489	47394489	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:47394489G>A	uc002iov.3	-	2	1063	c.599C>T	c.(598-600)GCA>GTA	p.A200V	ZNF652_uc002iow.2_Missense_Mutation_p.A200V|ZNF652_uc002iou.3_Intron	NM_001145365	NP_001138837	Q9Y2D9	ZN652_HUMAN	zinc finger protein 652	200					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1	all_cancers(4;6.81e-14)|Breast(4;4.97e-29)|all_epithelial(4;1.53e-17)		BRCA - Breast invasive adenocarcinoma(1;3.1e-14)|Epithelial(5;2.92e-06)|all cancers(6;3.15e-05)			AGTGGTAGCTGCGGCAACAGA	0.493												
SLC35B1	10237	broad.mit.edu	37	17	47781497	47781497	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:47781497T>C	uc002iph.1	-	6	707	c.620A>G	c.(619-621)AAC>AGC	p.N207S	SLC35B1_uc002ipi.1_Missense_Mutation_p.N140S|SLC35B1_uc002ipj.1_Missense_Mutation_p.N83S|SLC35B1_uc010wly.1_Missense_Mutation_p.N207S	NM_005827	NP_005818	P78383	S35B1_HUMAN	solute carrier family 35, member B1	207						endoplasmic reticulum membrane|integral to membrane|microsome	UDP-galactose transmembrane transporter activity				0						AAGGTTGATGTTCAGCATCAT	0.527												
ITGA3	3675	broad.mit.edu	37	17	48158769	48158769	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:48158769G>A	uc010dbl.2	+	23	3380	c.2916G>A	c.(2914-2916)ACG>ACA	p.T972T	ITGA3_uc010dbm.2_Silent_p.T972T	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	972	Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						ACAAGACCACGTGGGTGAGTG	0.517												
LRRC59	55379	broad.mit.edu	37	17	48462559	48462559	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:48462559C>T	uc002iqt.2	-	6	750	c.596G>A	c.(595-597)CGG>CAG	p.R199Q		NM_018509	NP_060979	Q96AG4	LRC59_HUMAN	leucine rich repeat containing 59	199	Potential.|Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial nucleoid	protein binding			central_nervous_system(1)	1	Breast(11;5.62e-19)		BRCA - Breast invasive adenocarcinoma(22;2.43e-08)			CTCCTTTCTCCGGCGCTCCTT	0.552												
RSAD1	55316	broad.mit.edu	37	17	48559747	48559747	+	Missense_Mutation	SNP	A	A	G	rs140459309	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:48559747A>G	uc002iqw.1	+	4	826	c.770A>G	c.(769-771)TAC>TGC	p.Y257C	RSAD1_uc010wmq.1_RNA	NM_018346	NP_060816	Q9HA92	RSAD1_HUMAN	radical S-adenosyl methionine domain containing	257					porphyrin biosynthetic process	mitochondrion	4 iron, 4 sulfur cluster binding|coproporphyrinogen oxidase activity|metal ion binding				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			GCTGAGATGTACCAGAGGGGC	0.652											OREG0024567	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
ABCC3	8714	broad.mit.edu	37	17	48746229	48746229	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:48746229T>C	uc002isl.2	+	15	1966	c.1886T>C	c.(1885-1887)ATA>ACA	p.I629T		NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	629	ABC transporter 1.|Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GCCATCACCATACACAGTGGC	0.557												
ABCC3	8714	broad.mit.edu	37	17	48765057	48765057	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:48765057G>A	uc002isl.2	+	30	4521	c.4441G>A	c.(4441-4443)GCA>ACA	p.A1481T	ABCC3_uc002isn.2_Missense_Mutation_p.A235T	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	1481	Cytoplasmic (By similarity).|ABC transporter 2.				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CCTGACCATCGCACACCGGCT	0.577												
WFIKKN2	124857	broad.mit.edu	37	17	48917518	48917518	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:48917518G>A	uc002isv.3	+	2	1563	c.869G>A	c.(868-870)CGG>CAG	p.R290Q	WFIKKN2_uc010dbu.2_Missense_Mutation_p.R197Q	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	290	Ig-like C2-type.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			TGCACGGCCCGGAACGTGGCT	0.622												
WFIKKN2	124857	broad.mit.edu	37	17	48917660	48917660	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:48917660T>C	uc002isv.3	+	2	1705	c.1011T>C	c.(1009-1011)TGT>TGC	p.C337C	WFIKKN2_uc010dbu.2_Silent_p.C244C	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	337	BPTI/Kunitz inhibitor 1.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			GTGAGGACTGTGGCGAAGAGC	0.627												
SPAG9	9043	broad.mit.edu	37	17	49074005	49074005	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:49074005C>T	uc002itc.2	-	16	2098	c.1889G>A	c.(1888-1890)CGT>CAT	p.R630H	SPAG9_uc002itb.2_Missense_Mutation_p.R616H|SPAG9_uc002itd.2_Missense_Mutation_p.R620H|SPAG9_uc002itf.2_Missense_Mutation_p.R451H|SPAG9_uc002ita.2_Missense_Mutation_p.R473H|SPAG9_uc002ite.2_Missense_Mutation_p.R460H	NM_001130528	NP_001124000	O60271	JIP4_HUMAN	sperm associated antigen 9 isoform 1	630					positive regulation of cell migration|positive regulation of muscle cell differentiation|retrograde transport, endosome to Golgi|spermatogenesis	acrosomal vesicle|integral to membrane|perinuclear region of cytoplasm				lung(4)|breast(1)	5			BRCA - Breast invasive adenocarcinoma(22;4.24e-07)			TTTTACCTGACGATACTGCTC	0.403												
NME1-NME2	654364	broad.mit.edu	37	17	49245649	49245649	+	Missense_Mutation	SNP	G	G	A	rs138826459		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:49245649G>A	uc002itk.2	+	7	846	c.593G>A	c.(592-594)CGA>CAA	p.R198Q	NME1-NME2_uc002itj.2_Missense_Mutation_p.R173Q|NME2_uc002itl.2_Missense_Mutation_p.R58Q|NME2_uc002itm.2_Missense_Mutation_p.R58Q|NME2_uc002itn.2_Missense_Mutation_p.R58Q|NME2_uc002ito.2_Missense_Mutation_p.R58Q	NM_002512	NP_002503	P22392	NDKB_HUMAN	nucleoside diphosphate kinase B	58	Interaction with AKAP13.				cell adhesion|CTP biosynthetic process|GTP biosynthetic process|negative regulation of apoptosis|nucleobase, nucleoside and nucleotide interconversion|positive regulation of epithelial cell proliferation|positive regulation of keratinocyte differentiation|UTP biosynthetic process	cytosol|lamellipodium|nucleus|ruffle	ATP binding|DNA binding|metal ion binding|nucleoside diphosphate kinase activity|protein binding|protein histidine kinase activity|sequence-specific DNA binding transcription factor activity				0			BRCA - Breast invasive adenocarcinoma(22;1.54e-08)			CTGAAAGACCGACCATTCTTC	0.527												
MBTD1	54799	broad.mit.edu	37	17	49284306	49284306	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:49284306T>C	uc002itr.3	-	7	891	c.547A>G	c.(547-549)ACA>GCA	p.T183A	MBTD1_uc002itp.3_Missense_Mutation_p.T19A|MBTD1_uc002itq.3_Missense_Mutation_p.T183A	NM_017643	NP_060113	Q05BQ5	MBTD1_HUMAN	mbt domain containing 1	183	MBT 1.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(22;1.54e-08)			CTGCAGTCTGTATTGGGAACT	0.378												
CA10	56934	broad.mit.edu	37	17	50008372	50008372	+	Missense_Mutation	SNP	C	C	T	rs148839711	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:50008372C>T	uc002itw.3	-	3	1243	c.257G>A	c.(256-258)CGC>CAC	p.R86H	CA10_uc002itv.3_Missense_Mutation_p.R92H|CA10_uc002itx.3_Missense_Mutation_p.R86H|CA10_uc002ity.3_Missense_Mutation_p.R86H|CA10_uc002itz.2_Missense_Mutation_p.R86H	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	86					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			CGTGTTGATGCGAAGAGGTGT	0.498												
KIF2B	84643	broad.mit.edu	37	17	51900667	51900667	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:51900667G>A	uc002iua.2	+	1	429	c.273G>A	c.(271-273)CCG>CCA	p.P91P		NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	91					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						ACCCCATGCCGCCCCCGCCCT	0.567												
STXBP4	252983	broad.mit.edu	37	17	53078195	53078195	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:53078195A>G	uc002iuf.1	+	7	732	c.525A>G	c.(523-525)GTA>GTG	p.V175V	STXBP4_uc010dcc.1_Silent_p.V100V|STXBP4_uc010dcd.1_Silent_p.V175V	NM_178509	NP_848604	Q6ZWJ1	STXB4_HUMAN	syntaxin binding protein 4	175						cytoplasm	calcium ion binding			ovary(1)	1						ACAAAACAGTACAGATTCCAA	0.308												
DGKE	8526	broad.mit.edu	37	17	54912353	54912353	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:54912353A>G	uc002iur.2	+	2	377	c.197A>G	c.(196-198)GAC>GGC	p.D66G	DGKE_uc002ius.1_Missense_Mutation_p.D66G|C17orf67_uc002iuq.2_5'Flank	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	66	Phorbol-ester/DAG-type 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					CGCGACACGGACCTGTTCAGC	0.677												
TRIM25	7706	broad.mit.edu	37	17	54981735	54981735	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:54981735C>T	uc002iut.2	-	3	868	c.808G>A	c.(808-810)GTC>ATC	p.V270I	TRIM25_uc010dcj.2_Missense_Mutation_p.V62I	NM_005082	NP_005073	Q14258	TRI25_HUMAN	tripartite motif-containing 25	270	Interaction with influenza A virus NS1.|Potential.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|response to virus	cell junction|cytosol|nucleus	sequence-specific DNA binding transcription factor activity|ubiquitin-protein ligase activity|zinc ion binding			lung(1)|breast(1)|skin(1)	3	Breast(9;6.15e-08)					TTGCTGTTGACCCTCTTCTCC	0.473												
VEZF1	7716	broad.mit.edu	37	17	56060228	56060228	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:56060228T>C	uc002ivf.1	-	2	703	c.560A>G	c.(559-561)TAC>TGC	p.Y187C	VEZF1_uc010dcn.1_Missense_Mutation_p.Y31C	NM_007146	NP_009077	Q14119	VEZF1_HUMAN	zinc finger protein 161	187	C2H2-type 2.				cellular defense response|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						ATTGAGATGGTACACATCTCG	0.483												
SFRS1	6426	broad.mit.edu	37	17	56082772	56082772	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:56082772T>C	uc002ivi.2	-	4	951	c.742A>G	c.(742-744)ACA>GCA	p.T248A	SFRS1_uc002ivj.2_3'UTR	NM_006924	NP_008855	Q07955	SRSF1_HUMAN	splicing factor, arginine/serine-rich 1 isoform	248				Missing: In RS-C; loss of ability to activate splicing but retains splice site switching.|Missing: In MR-A; loss of ability to activate splicing.|Missing: In MR-B; strongly inhibits splicing.|Missing: In RS-B; retains both splice activation and splice site switching activity.	mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA 5'-splice site recognition|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytoplasm|nuclear speck	nucleotide binding|RNA binding				0		Colorectal(1115;0.0691)		LUAD - Lung adenocarcinoma(1115;0.247)		TCATCTTATGTACGAGAGCGA	0.418												
MKS1	54903	broad.mit.edu	37	17	56291683	56291683	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:56291683T>C	uc002ivr.1	-	6	656	c.581A>G	c.(580-582)AAC>AGC	p.N194S	MKS1_uc010wnq.1_5'UTR|MKS1_uc002ivs.1_Missense_Mutation_p.N194S	NM_017777	NP_060247	Q9NXB0	MKS1_HUMAN	Meckel syndrome type 1 protein isoform 1	194					cilium assembly	centrosome|cilium|microtubule basal body	protein binding			ovary(1)	1						AATGACGTGGTTGTTCCTGAC	0.547												
BZRAP1	9256	broad.mit.edu	37	17	56385040	56385040	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:56385040C>T	uc002ivx.3	-	24	5786	c.4915G>A	c.(4915-4917)GTG>ATG	p.V1639M	BZRAP1_uc002ivv.2_5'Flank|BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.V1579M|BZRAP1_uc010wnt.1_Missense_Mutation_p.V1639M	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1639	SH3 2.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GACATTGACACGGGGTCATAG	0.552												
TEX14	56155	broad.mit.edu	37	17	56676460	56676460	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:56676460C>A	uc010dcz.1	-	14	2382	c.2264G>T	c.(2263-2265)AGG>ATG	p.R755M	TEX14_uc002iwr.1_Missense_Mutation_p.R749M|TEX14_uc002iws.1_Missense_Mutation_p.R749M|TEX14_uc010dda.1_Missense_Mutation_p.R529M	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	755	Potential.					cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTCGATATTCCTCAGCCTATC	0.418												
PPM1E	22843	broad.mit.edu	37	17	57057738	57057738	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:57057738C>A	uc002iwx.2	+	7	1741	c.1614C>A	c.(1612-1614)GCC>GCA	p.A538A	PPM1E_uc010ddd.2_Silent_p.A301A	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	547					protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			CAGCACCAGCCGACCTAGGCT	0.532												
PPM1E	22843	broad.mit.edu	37	17	57058186	57058186	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:57058186T>C	uc002iwx.2	+	7	2189	c.2062T>C	c.(2062-2064)TAT>CAT	p.Y688H	PPM1E_uc010ddd.2_Missense_Mutation_p.Y451H	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	697					protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			TCCAAAGTTTTATTCATTTCT	0.428												
CLTC	1213	broad.mit.edu	37	17	57759679	57759679	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:57759679G>A	uc002ixq.1	+	22	3933	c.3490G>A	c.(3490-3492)GCT>ACT	p.A1164T	CLTC_uc002ixp.2_Missense_Mutation_p.A1164T|CLTC_uc002ixr.1_Missense_Mutation_p.A1168T	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	1164	Heavy chain arm.|Proximal segment.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					CCGTAAGAAGGCTCGAGAGTC	0.393			T	ALK|TFE3	ALCL|renal 							
PTRH2	51651	broad.mit.edu	37	17	57775295	57775295	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:57775295A>G	uc002ixt.2	-	2	170	c.45T>C	c.(43-45)AGT>AGC	p.S15S	PTRH2_uc002ixs.2_RNA	NM_016077	NP_057161	Q9Y3E5	PTH2_HUMAN	Bcl-2 inhibitor of transcription precursor	15					apoptosis|translation	mitochondrion	aminoacyl-tRNA hydrolase activity				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					AGCCGAGTGTACTGGGATGAG	0.483												
HEATR6	63897	broad.mit.edu	37	17	58137347	58137347	+	Silent	SNP	G	G	A	rs61752323		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:58137347G>A	uc002iyk.1	-	10	1544	c.1527C>T	c.(1525-1527)TCC>TCT	p.S509S	HEATR6_uc010ddk.1_Silent_p.S48S|HEATR6_uc010wos.1_Silent_p.S341S	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	HEAT repeat containing 6	509							binding			ovary(1)|skin(1)	2	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			CGATCATTACGGAGAAGGGGG	0.453												
CA4	762	broad.mit.edu	37	17	58234823	58234823	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:58234823G>A	uc002iym.3	+	4	398	c.304G>A	c.(304-306)GGA>AGA	p.G102R	CA4_uc010wou.1_Intron	NM_000717	NP_000708	P22748	CAH4_HUMAN	carbonic anhydrase IV precursor	102					bicarbonate transport|one-carbon metabolic process	anchored to external side of plasma membrane|apical plasma membrane|brush border membrane|ER-Golgi intermediate compartment|membrane fraction|perinuclear region of cytoplasm|rough endoplasmic reticulum|secretory granule membrane|trans-Golgi network|transport vesicle membrane	carbonate dehydratase activity|protein binding|zinc ion binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.83e-12)|all cancers(12;6.83e-11)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	CAGCATTTCTGGAGGAGGACT	0.582												
USP32	84669	broad.mit.edu	37	17	58297062	58297062	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:58297062C>T	uc002iyo.1	-	16	2122	c.1836G>A	c.(1834-1836)CGG>CGA	p.R612R	USP32_uc002iyn.1_Silent_p.R282R	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	612					protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			ACTGCTGTGTCCGAGTGGCAG	0.443												
PPM1D	8493	broad.mit.edu	37	17	58734051	58734051	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:58734051C>T	uc002iyt.1	+	5	1331	c.1109C>T	c.(1108-1110)GCC>GTC	p.A370V	PPM1D_uc010ddm.1_RNA	NM_003620	NP_003611	O15297	PPM1D_HUMAN	protein phosphatase 1D	370	PP2C-like.				negative regulation of cell proliferation|protein dephosphorylation|response to radiation	nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein binding|protein serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;6.75e-12)|all cancers(12;1.96e-10)			AACACTAGTGCCATAGTAATC	0.463												
PPM1D	8493	broad.mit.edu	37	17	58740414	58740414	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:58740414T>C	uc002iyt.1	+	6	1541	c.1319T>C	c.(1318-1320)GTT>GCT	p.V440A	PPM1D_uc010ddm.1_RNA	NM_003620	NP_003611	O15297	PPM1D_HUMAN	protein phosphatase 1D	440					negative regulation of cell proliferation|protein dephosphorylation|response to radiation	nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein binding|protein serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;6.75e-12)|all cancers(12;1.96e-10)			CCTGCCCTGGTTCGTAGCAAT	0.413											OREG0031485	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)
TBX2	6909	broad.mit.edu	37	17	59479272	59479272	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:59479272A>G	uc010wox.1	+	2	904	c.623A>G	c.(622-624)AAG>AGG	p.K208R	TBX2_uc002ize.2_Missense_Mutation_p.K198R|TBX2_uc002izg.2_Missense_Mutation_p.K54R	NM_005994	NP_005985	Q13207	TBX2_HUMAN	T-box 2	208	T-box.				cell aging|positive regulation of cell proliferation		sequence-specific DNA binding				0						GCCTTCCACAAGCTGAAGCTG	0.612												
TBX4	9496	broad.mit.edu	37	17	59560530	59560530	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:59560530G>A	uc002izi.2	+	8	1336	c.1291G>A	c.(1291-1293)GTG>ATG	p.V431M	TBX4_uc010ddo.2_Missense_Mutation_p.V432M|TBX4_uc010woy.1_Missense_Mutation_p.V432M	NM_018488	NP_060958	P57082	TBX4_HUMAN	T-box 4	431					leg morphogenesis|skeletal system morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						CAGCTATAGCGTGCAGACGAT	0.647												
MED13	9969	broad.mit.edu	37	17	60033126	60033126	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:60033126A>G	uc002izo.2	-	25	5774	c.5697T>C	c.(5695-5697)TGT>TGC	p.C1899C		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	1899					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						CAGATATACCACACATTCTAC	0.433												
MED13	9969	broad.mit.edu	37	17	60072676	60072676	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:60072676T>C	uc002izo.2	-	10	2095	c.2018A>G	c.(2017-2019)CAG>CGG	p.Q673R		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	673					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						TTGATATTGCTGCACTAATTC	0.294												
MARCH10	162333	broad.mit.edu	37	17	60814662	60814662	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:60814662A>G	uc010ddr.2	-	6	805	c.567T>C	c.(565-567)TGT>TGC	p.C189C	MARCH10_uc002jag.3_Silent_p.C189C|MARCH10_uc010dds.2_Silent_p.C227C|MARCH10_uc002jah.2_Silent_p.C188C|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	189							ligase activity|zinc ion binding				0						GCTTAGTGTTACACATCAGGC	0.458												
ACE	1636	broad.mit.edu	37	17	61573878	61573878	+	Splice_Site	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:61573878G>A	uc002jau.1	+	23	3525	c.3503_splice	c.e23+1	p.A1168_splice	ACE_uc002jav.1_Splice_Site_p.A594_splice|ACE_uc010ddv.1_Splice_Site_p.A395_splice|ACE_uc010wpj.1_Intron|ACE_uc002jaw.1_Splice_Site|ACE_uc010wpk.1_Intron	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1						arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	AGCGCCTGGCGTGAGTGTCCT	0.622												
MAP3K3	4215	broad.mit.edu	37	17	61770979	61770979	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:61770979G>A	uc002jbg.2	+	16	2042	c.1723G>A	c.(1723-1725)GCC>ACC	p.A575T	MAP3K3_uc002jbe.2_Missense_Mutation_p.A606T|MAP3K3_uc002jbf.2_Missense_Mutation_p.A606T|MAP3K3_uc002jbh.2_Missense_Mutation_p.A602T|MAP3K3_uc010wpo.1_Missense_Mutation_p.A490T|MAP3K3_uc010wpp.1_Missense_Mutation_p.A571T	NM_002401	NP_002392	Q99759	M3K3_HUMAN	mitogen-activated protein kinase kinase kinase 3	575	Protein kinase.				MAPKKK cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autophosphorylation	cytosol	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			lung(3)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)	6						AGCTATGGCCGCCATCTTCAA	0.587												
STRADA	92335	broad.mit.edu	37	17	61781717	61781717	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:61781717G>A	uc002jbm.2	-	11	1243	c.1084C>T	c.(1084-1086)CGC>TGC	p.R362C	STRADA_uc002jbn.2_Missense_Mutation_p.R304C|STRADA_uc002jbo.2_Missense_Mutation_p.R325C|STRADA_uc002jbp.2_Missense_Mutation_p.R325C|STRADA_uc002jbq.2_Missense_Mutation_p.R304C|STRADA_uc010wpq.1_Intron|STRADA_uc010wpr.1_Intron|STRADA_uc010ddw.2_Missense_Mutation_p.R333C|STRADA_uc002jbr.2_3'UTR	NM_001003787	NP_001003787	Q7RTN6	STRAA_HUMAN	STE20-related kinase adaptor alpha isoform 1	362	Protein kinase.				activation of protein kinase activity|cell cycle arrest|insulin receptor signaling pathway|protein export from nucleus|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|kinase binding|protein kinase activity			ovary(1)	1						TCCGGGTTGCGCTGAAGGCAC	0.657												
SCN4A	6329	broad.mit.edu	37	17	62018253	62018253	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:62018253C>T	uc002jds.1	-	24	5466	c.5389G>A	c.(5389-5391)GAG>AAG	p.E1797K		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1797					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TCCCCTGCCTCGCCCTTCTCC	0.667												
LRRC37A3	374819	broad.mit.edu	37	17	62856350	62856350	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:62856350T>A	uc002jey.2	-	11	4445	c.3914A>T	c.(3913-3915)TAC>TTC	p.Y1305F	LRRC37A3_uc010wqg.1_Missense_Mutation_p.Y423F|LRRC37A3_uc002jex.1_Missense_Mutation_p.Y282F|LRRC37A3_uc010wqf.1_Missense_Mutation_p.Y343F|LRRC37A3_uc010dek.1_Missense_Mutation_p.Y311F	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	1305	Extracellular (Potential).					integral to membrane					0						GTGAAAGCGGTATTTTTTTCT	0.408												
RGS9	8787	broad.mit.edu	37	17	63221143	63221143	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:63221143C>T	uc002jfe.2	+	18	1541	c.1431C>T	c.(1429-1431)AGC>AGT	p.S477S	RGS9_uc010dem.2_Silent_p.S474S|RGS9_uc002jfd.2_Silent_p.S474S|RGS9_uc002jff.2_RNA|RGS9_uc002jfg.2_Silent_p.S248S	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	477					intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						TGGCTCCCAGCCCCCATCTGA	0.657												
HELZ	9931	broad.mit.edu	37	17	65124796	65124796	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:65124796T>C	uc010wqk.1	-	24	3548	c.3361A>G	c.(3361-3363)ACC>GCC	p.T1121A	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.T1120A	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					TGTTTGTTGGTACTTCCTGAA	0.443												
HELZ	9931	broad.mit.edu	37	17	65124955	65124955	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:65124955A>G	uc010wqk.1	-	24	3389	c.3202T>C	c.(3202-3204)TTT>CTT	p.F1068L	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.F1067L	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					AGGGCAATAAACCGTTCCCAA	0.333												
HELZ	9931	broad.mit.edu	37	17	65184543	65184543	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:65184543C>T	uc010wqk.1	-	12	1241	c.1054G>A	c.(1054-1056)GCA>ACA	p.A352T	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.A352T	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					GTGTTAAATGCTATCCCGACT	0.393												
PSMD12	5718	broad.mit.edu	37	17	65362568	65362568	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:65362568G>A	uc002jfy.2	-	1	154	c.68C>T	c.(67-69)ACG>ATG	p.T23M	PSMD12_uc002jga.2_Missense_Mutation_p.T23M|PSMD12_uc002jfz.2_Translation_Start_Site|PSMD12_uc010det.1_Missense_Mutation_p.T23M	NM_002816	NP_002807	O00232	PSD12_HUMAN	proteasome 26S non-ATPase subunit 12 isoform 1	23					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	protein binding				0	all_cancers(12;2.38e-11)|all_epithelial(3;8.27e-13)					CTGATCCACCGTGGCGCTGTA	0.701												
NOL11	25926	broad.mit.edu	37	17	65720235	65720235	+	Missense_Mutation	SNP	G	G	A	rs148391618		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:65720235G>A	uc002jgd.1	+	6	593	c.590G>A	c.(589-591)GGA>GAA	p.G197E	NOL11_uc010wql.1_Missense_Mutation_p.G15E|NOL11_uc010deu.1_5'UTR	NM_015462	NP_056277	Q9H8H0	NOL11_HUMAN	nucleolar protein 11	197						nucleolus					0	all_cancers(12;1.54e-10)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0518)|COAD - Colon adenocarcinoma(4;0.0977)|LUSC - Lung squamous cell carcinoma(166;0.24)			CTCTTACTTGGACAAGACGAA	0.294												
BPTF	2186	broad.mit.edu	37	17	65889599	65889599	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:65889599C>T	uc002jgf.2	+	6	2230	c.2169C>T	c.(2167-2169)CGC>CGT	p.R723R	BPTF_uc002jge.2_Silent_p.R849R|BPTF_uc010wqm.1_Silent_p.R786R	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	849	Interaction with MAZ.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			GGAAGTATCGCGTCTACCACA	0.388												
FAM20A	54757	broad.mit.edu	37	17	66538220	66538220	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:66538220A>G	uc002jho.2	-	7	1303	c.1015T>C	c.(1015-1017)TCC>CCC	p.S339P	FAM20A_uc010wqp.1_Missense_Mutation_p.S201P|PRKAR1A_uc002jhm.2_Intron|FAM20A_uc002jhn.2_Silent_p.V41V	NM_017565	NP_060035	Q96MK3	FA20A_HUMAN	family with sequence similarity 20, member A	339						extracellular region					0	Breast(10;1.64e-13)					GCAGAGAGGGAACCCTCCAGC	0.597												
ABCA8	10351	broad.mit.edu	37	17	66925370	66925370	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:66925370A>G	uc002jhp.2	-	8	1124	c.945T>C	c.(943-945)GCT>GCC	p.A315A	ABCA8_uc002jhq.2_Silent_p.A315A|ABCA8_uc010wqq.1_Silent_p.A315A|ABCA8_uc010wqr.1_Silent_p.A254A|ABCA8_uc002jhr.2_Silent_p.A315A	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	315	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					AGAAAGCCAAAGCTACCTAAA	0.368												
ABCA10	10349	broad.mit.edu	37	17	67150037	67150037	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:67150037C>A	uc010dfa.1	-	33	4779	c.3900G>T	c.(3898-3900)GAG>GAT	p.E1300D	ABCA10_uc010wqs.1_Missense_Mutation_p.E292D|ABCA10_uc010wqt.1_RNA	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	1300	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					ACTCCAAGTGCTCTTTCATTG	0.493												
ABCA10	10349	broad.mit.edu	37	17	67215708	67215708	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:67215708C>T	uc010dfa.1	-	7	1387	c.508G>A	c.(508-510)GGT>AGT	p.G170S	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfc.1_Missense_Mutation_p.G62S	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	170					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					TCTCGGAGACCCATCACTGTC	0.318												
GPRC5C	55890	broad.mit.edu	37	17	72428192	72428192	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:72428192C>T	uc002jkp.2	+	1	526	c.15C>T	c.(13-15)GGC>GGT	p.G5G	GPRC5C_uc002jkq.2_Silent_p.G5G|GPRC5C_uc002jkr.2_5'Flank	NM_022036	NP_071319	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	Error:Variant_position_missing_in_Q9NQ84_after_alignment						cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						GGGGGCGTGGCAGTCAACAGC	0.677												
CD300LF	146722	broad.mit.edu	37	17	72691997	72691997	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:72691997A>G	uc002jlg.2	-	6	687	c.584T>C	c.(583-585)GTA>GCA	p.V195A	RAB37_uc002jlc.2_Intron|RAB37_uc010dfu.2_Intron|RAB37_uc002jld.2_Intron|CD300LF_uc002jlf.2_Missense_Mutation_p.V198A|CD300LF_uc010dfw.2_RNA|CD300LF_uc002jlh.2_Silent_p.G210G|CD300LF_uc002jli.2_Silent_p.G160G|CD300LF_uc010wra.1_Missense_Mutation_p.V210A|CD300LF_uc002jlj.1_Silent_p.G205G	NM_139018	NP_620587	Q8TDQ1	CLM1_HUMAN	NK inhibitory receptor precursor	195	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			upper_aerodigestive_tract(1)	1						GGGCTGCAGTACCTGGGACAG	0.617												
TMEM104	54868	broad.mit.edu	37	17	72832138	72832138	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:72832138C>T	uc002jls.3	+	10	965	c.803C>T	c.(802-804)GCT>GTT	p.A268V	TMEM104_uc010wrf.1_Intron|TMEM104_uc010wrg.1_Intron|TMEM104_uc010dfx.2_Missense_Mutation_p.A268V	NM_017728	NP_060198	Q8NE00	TM104_HUMAN	transmembrane protein 104	268	Extracellular (Potential).					integral to membrane					0	all_lung(278;0.23)					CCGCCCCTGGCTGACTTCTCG	0.627												
TMEM104	54868	broad.mit.edu	37	17	72832395	72832395	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:72832395C>T	uc002jls.3	+	10	1222	c.1060C>T	c.(1060-1062)CGC>TGC	p.R354C	TMEM104_uc010wrf.1_Intron|TMEM104_uc010wrg.1_Intron|TMEM104_uc010dfx.2_Missense_Mutation_p.R354C	NM_017728	NP_060198	Q8NE00	TM104_HUMAN	transmembrane protein 104	354	Extracellular (Potential).					integral to membrane					0	all_lung(278;0.23)					GGCCGCTGTGCGCTTTTTCCT	0.607												
FDXR	2232	broad.mit.edu	37	17	72860346	72860346	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:72860346C>T	uc002jly.2	-	9	1013	c.926G>A	c.(925-927)CGA>CAA	p.R309Q	FDXR_uc010wri.1_Missense_Mutation_p.R257Q|FDXR_uc010wrj.1_Missense_Mutation_p.R307Q|FDXR_uc002jlw.2_Missense_Mutation_p.R66Q|FDXR_uc002jlx.2_Missense_Mutation_p.R315Q|FDXR_uc002jmc.2_Missense_Mutation_p.R281Q|FDXR_uc010wrk.1_Missense_Mutation_p.R340Q|FDXR_uc010wrl.1_Missense_Mutation_p.R352Q|FDXR_uc002jma.2_Missense_Mutation_p.R310Q|FDXR_uc010wrm.1_Missense_Mutation_p.R269Q|FDXR_uc002jlz.2_Missense_Mutation_p.R301Q|FDXR_uc002jmb.2_RNA	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	309					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					CTGGGGGCTTCGGAAAAAGCG	0.652												
C17orf28	283987	broad.mit.edu	37	17	72959143	72959143	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:72959143G>A	uc002jmj.3	-	4	570	c.421C>T	c.(421-423)CTG>TTG	p.L141L	C17orf28_uc010wrs.1_5'UTR|C17orf28_uc002jmk.2_Silent_p.L140L	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	141						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					GACTCGGCCAGGGGCCTGGCA	0.647												
SLC16A5	9121	broad.mit.edu	37	17	73096199	73096199	+	Silent	SNP	C	C	T	rs142993518	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:73096199C>T	uc002jmr.2	+	5	813	c.441C>T	c.(439-441)GGC>GGT	p.G147G	SLC16A5_uc002jms.1_Silent_p.G147G|SLC16A5_uc002jmt.2_Silent_p.G147G|SLC16A5_uc002jmu.2_Silent_p.G147G|SLC16A5_uc010wrt.1_Silent_p.G187G	NM_004695	NP_004686	O15375	MOT6_HUMAN	solute carrier family 16, member 5	147	Helical; (Potential).				organic anion transport	integral to plasma membrane|membrane fraction	secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	all_lung(278;0.226)		LUSC - Lung squamous cell carcinoma(166;0.162)|Lung(188;0.235)		Pyruvic acid(DB00119)	CCTCGATGGGCGTCTCCCTGG	0.642												
RECQL5	9400	broad.mit.edu	37	17	73626707	73626707	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:73626707G>A	uc010dgl.2	-	13	1866	c.1710C>T	c.(1708-1710)ACC>ACT	p.T570T	RECQL5_uc010dgk.2_Silent_p.T543T|RECQL5_uc002jot.3_5'Flank|LOC643008_uc002jow.2_5'Flank	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	570					DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			ACTCATCAGCGGTACGTGTTG	0.622								Other_identified_genes_with_known_or_suspected_DNA_repair_function				
ITGB4	3691	broad.mit.edu	37	17	73745107	73745107	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:73745107C>A	uc002jpg.2	+	27	3484	c.3297C>A	c.(3295-3297)ACC>ACA	p.T1099T	ITGB4_uc002jph.2_Silent_p.T1099T|ITGB4_uc002jpi.3_Silent_p.T1099T|ITGB4_uc002jpj.2_Silent_p.T1099T	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1099	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			ACTCCACCACCATCATCATCA	0.582												
ITGB4	3691	broad.mit.edu	37	17	73748559	73748559	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:73748559G>A	uc002jpg.2	+	32	4196	c.4009G>A	c.(4009-4011)GCC>ACC	p.A1337T	ITGB4_uc002jph.2_Missense_Mutation_p.A1337T|ITGB4_uc002jpi.3_Missense_Mutation_p.A1337T|ITGB4_uc002jpj.2_Missense_Mutation_p.A1337T|GALK1_uc010wsi.1_Intron	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1337	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TATCGTGGACGCCCAGAGCGG	0.662												
TRIM47	91107	broad.mit.edu	37	17	73871509	73871509	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:73871509A>G	uc002jpw.2	-	5	1275	c.1248T>C	c.(1246-1248)AGT>AGC	p.S416S	TRIM47_uc002jpv.2_Silent_p.S178S	NM_033452	NP_258411	Q96LD4	TRI47_HUMAN	tripartite motif-containing 47	416	B30.2/SPRY.					cytoplasm|nucleus	zinc ion binding			ovary(2)|prostate(1)|lung(1)|breast(1)	5			Epithelial(20;4.23e-06)|all cancers(21;5.24e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00092)|LUSC - Lung squamous cell carcinoma(166;0.154)			TGGGAGCTTCACTCTCCAAGA	0.622												
EXOC7	23265	broad.mit.edu	37	17	74097856	74097856	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:74097856C>T	uc002jqs.2	-	3	310	c.215G>A	c.(214-216)CGG>CAG	p.R72Q	EXOC7_uc010dgv.1_Missense_Mutation_p.R19Q|EXOC7_uc002jqq.2_Missense_Mutation_p.R72Q|EXOC7_uc010wsw.1_Missense_Mutation_p.R72Q|EXOC7_uc010wsx.1_Missense_Mutation_p.R72Q|EXOC7_uc002jqr.2_Missense_Mutation_p.R72Q|EXOC7_uc010wsv.1_Missense_Mutation_p.R31Q|EXOC7_uc002jqu.2_Missense_Mutation_p.R72Q|EXOC7_uc002jqv.2_Missense_Mutation_p.R72Q	NM_001145297	NP_001138769	Q9UPT5	EXOC7_HUMAN	exocyst complex component 7 isoform 4	72	Potential.				exocytosis|protein transport	centriolar satellite|cytosol|exocyst|plasma membrane	protein binding				0			LUSC - Lung squamous cell carcinoma(166;0.187)			CTCCTGCAGCCGCTGCAGATT	0.532												
FOXJ1	2302	broad.mit.edu	37	17	74134076	74134076	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:74134076G>A	uc002jqw.2	-	2	714	c.624C>T	c.(622-624)GGC>GGT	p.G208G	FOXJ1_uc002jqx.2_Silent_p.G208G|uc002jqy.1_5'Flank	NM_001454	NP_001445	Q92949	FOXJ1_HUMAN	forkhead box J1	208	Fork-head.				actin cytoskeleton organization|activation of Rho GTPase activity|central tolerance induction|cilium assembly|epithelial cell differentiation|establishment of apical/basal cell polarity|heart looping|humoral immune response|left/right pattern formation|leukocyte migration|lung development|negative regulation of B cell activation|negative regulation of germinal center formation|negative regulation of humoral immune response mediated by circulating immunoglobulin|negative regulation of interleukin-6 biosynthetic process|negative regulation of NF-kappaB transcription factor activity|negative regulation of T cell differentiation in thymus|negative regulation of T cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of central B cell tolerance induction|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			pancreas(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			TCTTGAAAGCGCCGCTCAGTA	0.672												
RNF157	114804	broad.mit.edu	37	17	74154490	74154490	+	Missense_Mutation	SNP	A	A	G	rs79252974		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:74154490A>G	uc002jqz.2	-	13	1466	c.1397T>C	c.(1396-1398)GTT>GCT	p.V466A	RNF157_uc002jra.2_Missense_Mutation_p.V466A	NM_052916	NP_443148	Q96PX1	RN157_HUMAN	ring finger protein 157	466	Ser-rich.						zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			GAGATGCTGAACCGACGGTCT	0.532												
RNF157	114804	broad.mit.edu	37	17	74158016	74158016	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:74158016G>A	uc002jqz.2	-	10	929	c.860C>T	c.(859-861)ACC>ATC	p.T287I	RNF157_uc002jra.2_Missense_Mutation_p.T287I	NM_052916	NP_443148	Q96PX1	RN157_HUMAN	ring finger protein 157	287	RING-type.						zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			CAGAATCAAGGTGTCCCGGAC	0.572												
PRPSAP1	5635	broad.mit.edu	37	17	74344633	74344633	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:74344633A>G	uc010wta.1	-	2	646	c.200T>C	c.(199-201)GTT>GCT	p.V67A	PRPSAP1_uc010wtb.1_5'UTR	NM_002766	NP_002757	Q14558	KPRA_HUMAN	phosphoribosyl pyrophosphate	38					nucleotide biosynthetic process		enzyme inhibitor activity|identical protein binding|magnesium ion binding|ribose phosphate diphosphokinase activity			ovary(1)	1						TTGATATACAACAGACTTCCC	0.224												
UBE2O	63893	broad.mit.edu	37	17	74392545	74392545	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:74392545T>G	uc002jrm.3	-	14	2538	c.2473A>C	c.(2473-2475)AAG>CAG	p.K825Q	UBE2O_uc002jrn.3_Missense_Mutation_p.K825Q|UBE2O_uc002jrl.3_Missense_Mutation_p.K429Q	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	825	Potential.						ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						GTCATGTTCTTGAGGCTCTCC	0.597												
JMJD6	23210	broad.mit.edu	37	17	74714908	74714908	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:74714908T>C	uc002jso.2	-	6	1439	c.1115A>G	c.(1114-1116)CAC>CGC	p.H372R	JMJD6_uc002jsn.1_Missense_Mutation_p.H372R|JMJD6_uc010dgz.2_Missense_Mutation_p.T326A	NM_015167	NP_055982	Q6NYC1	JMJD6_HUMAN	jumonji domain containing 6 isoform 2	372					mRNA processing|peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine|regulation of nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|sprouting angiogenesis|transcription, DNA-dependent	nucleolus|nucleoplasm	histone demethylase activity (H3-R2 specific)|histone demethylase activity (H4-R3 specific)|identical protein binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptidyl-lysine 5-dioxygenase activity|single-stranded RNA binding			skin(2)|ovary(1)	3						CTTCCTGCGGTGCACTGTCCC	0.572												
MFSD11	79157	broad.mit.edu	37	17	74737081	74737081	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:74737081T>C	uc002jta.2	+	4	1168	c.195T>C	c.(193-195)ATT>ATC	p.I65I	MFSD11_uc002jtb.2_Silent_p.I65I|MFSD11_uc010dha.2_Silent_p.I65I|MFSD11_uc002jtc.2_Silent_p.I65I|MFSD11_uc002jtd.3_Silent_p.I65I|MFSD11_uc010dhb.2_Silent_p.I65I|MFSD11_uc002jte.2_Silent_p.I65I	NM_024311	NP_077287	O43934	MFS11_HUMAN	major facilitator superfamily domain containing	65	Helical; (Potential).					integral to membrane				ovary(1)	1						CAAATTTGATTACACCGTCAG	0.358												
SEC14L1	6397	broad.mit.edu	37	17	75205464	75205464	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:75205464A>G	uc002jto.2	+	14	1784	c.1517A>G	c.(1516-1518)TAC>TGC	p.Y506C	SEC14L1_uc010dhc.2_Missense_Mutation_p.Y506C|SEC14L1_uc010wth.1_Missense_Mutation_p.Y506C|SEC14L1_uc002jtm.2_Missense_Mutation_p.Y506C|SEC14L1_uc010wti.1_Missense_Mutation_p.Y472C|SEC14L1_uc010wtj.1_Missense_Mutation_p.Y66C|SEC14L1_uc002jtr.2_5'UTR	NM_003003	NP_002994	Q92503	S14L1_HUMAN	SEC14 (S. cerevisiae)-like 1 isoform a	506					transport	Golgi apparatus|integral to membrane	binding			ovary(2)	2						AAATCTCTGTACCGGACTGCA	0.537												
TNRC6C	57690	broad.mit.edu	37	17	76089187	76089187	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:76089187A>G	uc002jud.2	+	16	4744	c.4144A>G	c.(4144-4146)AGC>GGC	p.S1382G	TNRC6C_uc002juf.2_Missense_Mutation_p.S1379G	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1382	Sufficient for translational repression when tethered to a target mRNA.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			AAATGGCTCTAGCATCAACTG	0.507												
CBX4	8535	broad.mit.edu	37	17	77809108	77809108	+	Silent	SNP	C	C	T	rs142055924		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:77809108C>T	uc002jxe.2	-	5	496	c.333G>A	c.(331-333)GCG>GCA	p.A111A		NM_003655	NP_003646	O00257	CBX4_HUMAN	chromobox homolog 4	111	Interaction with BMI1.				anti-apoptosis|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|PcG protein complex	enzyme binding|transcription corepressor activity			skin(2)	2			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			CCTTCCCCTGCGCGCCCAAAT	0.657											OREG0024799	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
CCDC40	55036	broad.mit.edu	37	17	78063612	78063612	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:78063612C>T	uc010dht.2	+	17	2788	c.2761C>T	c.(2761-2763)CGT>TGT	p.R921C	CCDC40_uc002jxm.3_Missense_Mutation_p.R704C|CCDC40_uc002jxn.3_Missense_Mutation_p.R317C	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	921	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			AAAAGAGATGCGTTCCTCAGT	0.522												
EIF4A3	9775	broad.mit.edu	37	17	78111203	78111203	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:78111203T>A	uc010wuc.1	-	10	1038	c.965A>T	c.(964-966)GAG>GTG	p.E322V	EIF4A3_uc002jxs.2_Missense_Mutation_p.E322V	NM_014740	NP_055555	P38919	IF4A3_HUMAN	eukaryotic translation initiation factor 4A,	322	Helicase C-terminal.				mRNA transport|negative regulation of translation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation|rRNA processing	catalytic step 2 spliceosome|cytoplasm|exon-exon junction complex|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|poly(A) RNA binding|protein binding			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)			CGACCGGAACTCCTTCATGAT	0.542												
RNF213	57674	broad.mit.edu	37	17	78336981	78336981	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:78336981C>A	uc002jyh.1	+	15	5877	c.5654C>A	c.(5653-5655)CCG>CAG	p.P1885Q	uc002jyi.1_Intron|RNF213_uc010dhw.1_Missense_Mutation_p.P267Q	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GTTTCCTTACCGTGGGTGCAC	0.527												
RNF213	57674	broad.mit.edu	37	17	78345686	78345686	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:78345686A>G	uc002jyh.1	+	22	6880	c.6657A>G	c.(6655-6657)GTA>GTG	p.V2219V	uc002jyi.1_Intron|RNF213_uc010dhw.1_Silent_p.V601V	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			TTCATGATGTAAAAGATTATA	0.358												
RPTOR	57521	broad.mit.edu	37	17	78899241	78899241	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:78899241C>T	uc002jyt.1	+	24	3685	c.2880C>T	c.(2878-2880)TGC>TGT	p.C960C	RPTOR_uc010wug.1_Silent_p.C802C	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	960					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding	p.C960C(1)		lung(4)|urinary_tract(1)|ovary(1)	6						CGGGGTTCTGCGACTGGAGCG	0.592												
PDE6G	5148	broad.mit.edu	37	17	79620296	79620296	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:79620296T>C	uc002kay.3	-	2	184	c.40A>G	c.(40-42)ACC>GCC	p.T14A	PDE6G_uc002kaz.3_Intron	NM_002602	NP_002593	P18545	CNRG_HUMAN	phosphodiesterase 6G	14					platelet activation|visual perception	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|enzyme inhibitor activity				0	all_neural(118;0.0878)|all_lung(278;0.175)|Lung NSC(278;0.192)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			GCCACCCTGGTGGCTGACCGG	0.627												
ANAPC11	51529	broad.mit.edu	37	17	79857828	79857828	+	Missense_Mutation	SNP	T	T	C	rs34978095		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:79857828T>C	uc002kbv.1	+	4	357	c.142T>C	c.(142-144)TGG>CGG	p.W48R	ANAPC11_uc002kbw.1_Missense_Mutation_p.W48R|ANAPC11_uc002kbx.1_Missense_Mutation_p.W48R|ANAPC11_uc002kby.1_Missense_Mutation_p.V148A|ANAPC11_uc002kbz.1_Missense_Mutation_p.W48R|ANAPC11_uc002kca.1_Missense_Mutation_p.W48R|ANAPC11_uc002kcb.1_Missense_Mutation_p.W48R|ANAPC11_uc002kcc.1_Missense_Mutation_p.W48R|ANAPC11_uc010dih.1_Missense_Mutation_p.W48R|NPB_uc002kcd.2_5'Flank	NM_016476	NP_057560	Q9NYG5	APC11_HUMAN	APC11 anaphase promoting complex subunit 11	48	RING-type.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	zinc ion binding				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			CCCGCTGGTGTGGGGCCAGTG	0.632												
PCYT2	5833	broad.mit.edu	37	17	79864701	79864701	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:79864701G>A	uc002kcf.1	-	7	674	c.611C>T	c.(610-612)GCT>GTT	p.A204V	PCYT2_uc010wva.1_Missense_Mutation_p.A172V|PCYT2_uc010wvb.1_Missense_Mutation_p.A172V|PCYT2_uc002kce.1_Missense_Mutation_p.A126V|PCYT2_uc002kcg.1_Missense_Mutation_p.A233V|PCYT2_uc002kch.1_Missense_Mutation_p.A222V|PCYT2_uc002kci.1_Missense_Mutation_p.A163V|PCYT2_uc010dii.1_Missense_Mutation_p.A204V|PCYT2_uc010wvc.1_Missense_Mutation_p.A126V	NM_002861	NP_002852	Q99447	PCY2_HUMAN	phosphate cytidylyltransferase 2, ethanolamine	204	Catalytic 1 (Potential).				phospholipid biosynthetic process		ethanolamine-phosphate cytidylyltransferase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			CTTCCCAGAAGCAAACTGGAT	0.597												
PCYT2	5833	broad.mit.edu	37	17	79867402	79867402	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:79867402C>T	uc002kcf.1	-	2	229	c.166G>A	c.(166-168)GTG>ATG	p.V56M	PCYT2_uc010wva.1_Missense_Mutation_p.V24M|PCYT2_uc010wvb.1_Missense_Mutation_p.V24M|PCYT2_uc002kce.1_Translation_Start_Site|PCYT2_uc002kcg.1_Missense_Mutation_p.V67M|PCYT2_uc002kch.1_Missense_Mutation_p.V56M|PCYT2_uc002kci.1_Translation_Start_Site|PCYT2_uc010dii.1_Missense_Mutation_p.V56M|PCYT2_uc010wvc.1_Translation_Start_Site	NM_002861	NP_002852	Q99447	PCY2_HUMAN	phosphate cytidylyltransferase 2, ethanolamine	56	Catalytic 1 (Potential).				phospholipid biosynthetic process		ethanolamine-phosphate cytidylyltransferase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			TCGGTGTGCACGCCTACGATG	0.637												
ASPSCR1	79058	broad.mit.edu	37	17	79968697	79968697	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:79968697T>C	uc002kcx.2	+	10	1287	c.1190T>C	c.(1189-1191)TTC>TCC	p.F397S	ASPSCR1_uc002kcw.1_Missense_Mutation_p.F397S|ASPSCR1_uc002kcy.2_Missense_Mutation_p.F397S|ASPSCR1_uc002kcz.2_Missense_Mutation_p.F291S|ASPSCR1_uc002kda.2_Missense_Mutation_p.F320S	NM_024083	NP_076988	Q9BZE9	ASPC1_HUMAN	alveolar soft part sarcoma chromosome region,	397	UBX.						protein binding		ASPSCR1/TFE3(161)	soft_tissue(118)|kidney(43)|breast(1)	162	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			AGGGTCCTGTTCCCCGACCGC	0.701			T	TFE3	alveolar soft part sarcoma							
CCDC57	284001	broad.mit.edu	37	17	80159721	80159721	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:80159721C>T	uc002kdz.1	-	3	455	c.100G>A	c.(100-102)GCG>ACG	p.A34T	CCDC57_uc002kdx.1_Missense_Mutation_p.A34T	NM_198082	NP_932348	Q2TAC2	CCD57_HUMAN	coiled-coil domain containing 57	34	Potential.									ovary(2)	2	Breast(20;0.00285)|all_neural(118;0.0878)|all_lung(278;0.0949)|Lung NSC(278;0.128)|Ovarian(332;0.227)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0253)			TGCAGAGCCGCCTCCTGCAGC	0.657												
CD7	924	broad.mit.edu	37	17	80274701	80274701	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:80274701G>A	uc002kel.1	-	2	348	c.239C>T	c.(238-240)ACG>ATG	p.T80M	CD7_uc010din.2_Missense_Mutation_p.T80M|CD7_uc002kem.2_Silent_p.Y61Y|CD7_uc010wvk.1_Missense_Mutation_p.T80M	NM_006137	NP_006128	P09564	CD7_HUMAN	CD7 antigen precursor	80	Ig-like.|Extracellular (Probable).				immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|membrane fraction|plasma membrane	receptor activity				0	Breast(20;0.000675)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.249)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0667)			CCGTCTGTCCGTAGTGGGCAC	0.637												
C17orf62	79415	broad.mit.edu	37	17	80402337	80402337	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:80402337G>A	uc002kez.2	-	5	477	c.429C>T	c.(427-429)GTC>GTT	p.V143V	C17orf62_uc002kex.2_5'UTR|C17orf62_uc002key.2_5'UTR|C17orf62_uc002kfa.2_Silent_p.V143V|C17orf62_uc010dir.2_Silent_p.V143V|C17orf62_uc002kfb.3_Silent_p.V143V|C17orf62_uc002kfc.3_Silent_p.V129V|C17orf62_uc002kfd.3_5'UTR|C17orf62_uc002kfe.3_5'UTR	NM_001100407	NP_001093877	Q9BQA9	CQ062_HUMAN	hypothetical protein LOC79415 isoform a	143						integral to membrane	protein binding				0	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			GGTGGCCCATGACTGCACTCT	0.632												
B3GNTL1	146712	broad.mit.edu	37	17	80915107	80915107	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:80915107C>T	uc002kgg.1	-	10	894	c.880G>A	c.(880-882)GTG>ATG	p.V294M	B3GNTL1_uc002kgf.1_Missense_Mutation_p.V183M|B3GNTL1_uc002kge.1_RNA	NM_001009905	NP_001009905	Q67FW5	B3GNL_HUMAN	UDP-GlcNAc:betaGal	294							transferase activity, transferring glycosyl groups			ovary(1)|pancreas(1)	2	Breast(20;0.000443)|all_neural(118;0.0779)	all_cancers(8;0.0396)|all_epithelial(8;0.0556)	BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			TTCTCGTCCACGTCACAGAAT	0.637												
CETN1	1068	broad.mit.edu	37	18	580755	580755	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:580755A>G	uc002kko.1	+	1	389	c.347A>G	c.(346-348)GAT>GGT	p.D116G		NM_004066	NP_004057	Q12798	CETN1_HUMAN	centrin 1	116	EF-hand 3.				cell division|mitosis	spindle pole	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding			upper_aerodigestive_tract(1)|ovary(1)	2						TTTGATGACGATGAGACCGGG	0.522												
CLUL1	27098	broad.mit.edu	37	18	633332	633332	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:633332A>G	uc002kkp.2	+	6	1036	c.891A>G	c.(889-891)TTA>TTG	p.L297L	CLUL1_uc010wys.1_Silent_p.L349L|CLUL1_uc002kkq.2_Silent_p.L297L	NM_014410	NP_055225	Q15846	CLUL1_HUMAN	clusterin-like 1 (retinal) precursor	297					cell death	extracellular region				ovary(2)	2						CAAAGATGTTACCTGGGCAGG	0.428												
YES1	7525	broad.mit.edu	37	18	745763	745763	+	Nonsense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:745763A>T	uc002kky.2	-	6	890	c.669T>A	c.(667-669)TAT>TAA	p.Y223*	YES1_uc002kkz.2_Nonsense_Mutation_p.Y223*	NM_005433	NP_005424	P07947	YES_HUMAN	viral oncogene yes-1 homolog 1	223	SH2.				blood coagulation|leukocyte migration|regulation of vascular permeability|T cell costimulation	cytosol|plasma membrane	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|ovary(1)	3					Dasatinib(DB01254)	TGGTTGTGATATAGTATCCAC	0.358												
METTL4	64863	broad.mit.edu	37	18	2544269	2544269	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:2544269C>T	uc002klh.3	-	8	1978	c.1198G>A	c.(1198-1200)GTG>ATG	p.V400M	METTL4_uc010dkj.2_Intron	NM_022840	NP_073751	Q8N3J2	METL4_HUMAN	methyltransferase like 4	400					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		methyltransferase activity|nucleic acid binding			kidney(1)|skin(1)	2						ATGGGGAGCACGTTTACATCT	0.348												
NDC80	10403	broad.mit.edu	37	18	2575051	2575051	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:2575051G>A	uc002kli.2	+	3	347	c.165G>A	c.(163-165)TCG>TCA	p.S55S		NM_006101	NP_006092	O14777	NDC80_HUMAN	kinetochore associated 2	55	Interaction with the N-terminus of CDCA1.|Nuclear localization.				attachment of spindle microtubules to kinetochore|cell division|establishment of mitotic spindle orientation|mitotic prometaphase|mitotic sister chromatid segregation|mitotic spindle organization|phosphatidylinositol-mediated signaling	condensed nuclear chromosome outer kinetochore|cytosol|Ndc80 complex	protein binding			ovary(1)	1						GAAAAGTCTCGCTATTTGGCA	0.308												
SMCHD1	23347	broad.mit.edu	37	18	2703788	2703788	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:2703788A>G	uc002klm.3	+	13	1935	c.1746A>G	c.(1744-1746)GTA>GTG	p.V582V	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_5'Flank	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	582					chromosome organization		ATP binding				0						TTAAGGGAGTAATTACACGTC	0.388												
LPIN2	9663	broad.mit.edu	37	18	2921586	2921586	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:2921586T>C	uc002klo.2	-	18	2626	c.2387A>G	c.(2386-2388)AAT>AGT	p.N796S		NM_014646	NP_055461	Q92539	LPIN2_HUMAN	lipin 2	796	C-LIP.				fatty acid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|triglyceride biosynthetic process	cytosol|endoplasmic reticulum membrane|nucleus	phosphatidate phosphatase activity|transcription coactivator activity			ovary(1)|skin(1)	2				READ - Rectum adenocarcinoma(2;0.0419)|Colorectal(6;0.156)		GGCAAACAGATTCTTGATATC	0.398												
MYOM1	8736	broad.mit.edu	37	18	3100193	3100193	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:3100193G>A	uc002klp.2	-	25	4025	c.3691C>T	c.(3691-3693)CGT>TGT	p.R1231C	MYOM1_uc002klq.2_Missense_Mutation_p.R1135C	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1231						striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GCAAGTAAACGTTTCAATTCT	0.368												
ARHGAP28	79822	broad.mit.edu	37	18	6909002	6909002	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:6909002T>C	uc010wzi.1	+	16	1781	c.1543T>C	c.(1543-1545)TAT>CAT	p.Y515H	ARHGAP28_uc002kne.2_Missense_Mutation_p.Y533H			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	515					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				CCAAAGGTTATATGAAATTGG	0.269												
LAMA1	284217	broad.mit.edu	37	18	7014024	7014024	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:7014024C>T	uc002knm.2	-	23	3247	c.3153G>A	c.(3151-3153)TCG>TCA	p.S1051S	LAMA1_uc010wzj.1_Silent_p.S527S	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1051	Laminin EGF-like 12.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GATGATGAGTCGACCCCACGA	0.483												
KIAA0802	23255	broad.mit.edu	37	18	8784591	8784591	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:8784591G>A	uc002knr.2	+	6	1623	c.1481G>A	c.(1480-1482)GGC>GAC	p.G494D	KIAA0802_uc002knq.2_Missense_Mutation_p.G494D|KIAA0802_uc010dkw.1_Missense_Mutation_p.G332D	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	845											0						CCGGGGCCTGGCCTCCAGGGC	0.667												
SEH1L	81929	broad.mit.edu	37	18	12982630	12982630	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:12982630T>C	uc002krr.2	+	7	1013	c.875T>C	c.(874-876)GTG>GCG	p.V292A	SEH1L_uc002krq.2_Missense_Mutation_p.V292A	NM_031216	NP_112493	Q96EE3	SEH1_HUMAN	sec13-like protein isoform 2	292	WD 6.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|carbohydrate metabolic process|cell division|glucose transport|mitotic metaphase plate congression|mitotic prometaphase|mRNA transport|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex					0						ACAGGAACGGTGCTAGCATCT	0.413												
CEP192	55125	broad.mit.edu	37	18	13117599	13117599	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:13117599C>T	uc010xac.1	+	44	7512	c.7432C>T	c.(7432-7434)CCC>TCC	p.P2478S	CEP192_uc010xad.1_Missense_Mutation_p.P2003S|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_Missense_Mutation_p.P901S|CEP192_uc002krw.2_Missense_Mutation_p.P628S|CEP192_uc002krx.2_Missense_Mutation_p.P482S|CEP192_uc002kry.2_RNA	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	2478										ovary(4)|pancreas(1)	5						GTTTTTGAGTCCCAGAGAGCC	0.348												
C18orf19	125228	broad.mit.edu	37	18	13682058	13682058	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:13682058G>A	uc010dlh.2	-	3	451	c.19C>T	c.(19-21)CGG>TGG	p.R7W	C18orf19_uc010dlg.2_Missense_Mutation_p.R7W|C18orf19_uc010dli.2_Missense_Mutation_p.R7W|C18orf19_uc002ksj.3_Missense_Mutation_p.R7W|C18orf19_uc010dlj.2_Intron	NM_001098801	NP_001092271	Q96ND0	CR019_HUMAN	hypothetical protein LOC125228	7						integral to membrane				breast(2)	2						GATACAGTCCGTGGTACATTC	0.368												
RNMT	8731	broad.mit.edu	37	18	13731863	13731863	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:13731863A>G	uc002ksk.1	+	2	414	c.347A>G	c.(346-348)AAA>AGA	p.K116R	RNMT_uc002ksl.1_Missense_Mutation_p.K116R|RNMT_uc002ksm.1_Missense_Mutation_p.K116R|RNMT_uc010dlk.2_Missense_Mutation_p.K116R|RNMT_uc010xae.1_Intron	NM_003799	NP_003790	O43148	MCES_HUMAN	RNA (guanine-7-) methyltransferase	116					mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	mRNA (guanine-N7-)-methyltransferase activity|RNA binding				0						CCAAAAGATAAATCTTCTACT	0.343												
MC5R	4161	broad.mit.edu	37	18	13826335	13826335	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:13826335A>G	uc010xaf.1	+	1	571	c.571A>G	c.(571-573)ATC>GTC	p.I191V		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	191	Helical; Name=5; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						CCTGTGCCTCATCTCCATGTT	0.587												
ABHD3	171586	broad.mit.edu	37	18	19283615	19283615	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:19283615A>G	uc002ktl.2	-	2	396	c.256T>C	c.(256-258)TGC>CGC	p.C86R	ABHD3_uc002ktm.2_Missense_Mutation_p.C86R|ABHD3_uc010xao.1_RNA|MIB1_uc002ktp.2_5'Flank|ABHD3_uc002kto.2_Missense_Mutation_p.C86R	NM_138340	NP_612213	Q8WU67	ABHD3_HUMAN	alpha/beta hydrolase domain containing protein	86						integral to membrane	carboxylesterase activity			central_nervous_system(1)	1						CCCTCCCAGCACCAGACCGTC	0.532												
MIB1	57534	broad.mit.edu	37	18	19418353	19418353	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:19418353A>G	uc002ktq.2	+	13	1857	c.1857A>G	c.(1855-1857)TTA>TTG	p.L619L	MIB1_uc002ktp.2_Silent_p.L258L	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	619	ANK 6.				Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			TATCTAAATTACCAAGACCAT	0.338												
GATA6	2627	broad.mit.edu	37	18	19762729	19762729	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:19762729A>G	uc002ktt.1	+	5	1705	c.1440A>G	c.(1438-1440)CCA>CCG	p.P480P	GATA6_uc002ktu.1_Silent_p.P480P	NM_005257	NP_005248	Q92908	GATA6_HUMAN	GATA binding protein 6	480					blood coagulation|cardiac vascular smooth muscle cell differentiation|cellular response to hypoxia|intestinal epithelial cell differentiation|male gonad development|negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor-beta1 production|negative regulation of transforming growth factor-beta2 production|outflow tract septum morphogenesis|positive regulation of angiogenesis|positive regulation of cell cycle arrest|positive regulation of transcription from RNA polymerase II promoter|response to drug|response to growth factor stimulus		protein binding|protein kinase binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(3)	3	all_cancers(21;0.00271)|all_epithelial(16;7.31e-05)|Ovarian(2;0.116)|Lung NSC(20;0.123)|all_lung(20;0.246)		STAD - Stomach adenocarcinoma(5;0.106)			TGCCCAGACCACTTGCTATGA	0.318												
CTAGE1	64693	broad.mit.edu	37	18	19996570	19996570	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:19996570C>T	uc002ktv.1	-	1	1309	c.1205G>A	c.(1204-1206)CGA>CAA	p.R402Q		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	402	Potential.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					GGCTCGCTTTCGGTAGGTCTC	0.358												
C18orf45	85019	broad.mit.edu	37	18	20889670	20889670	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:20889670C>T	uc002kuf.2	-	14	913	c.804G>A	c.(802-804)GCG>GCA	p.A268A	C18orf45_uc010xaq.1_RNA|C18orf45_uc010xar.1_RNA|C18orf45_uc002kug.2_RNA|C18orf45_uc002kuh.2_RNA|C18orf45_uc002kue.2_RNA	NM_032933	NP_116322	Q24JQ0	CR045_HUMAN	hypothetical protein LOC85019	268	Helical; (Potential).					integral to membrane					0	all_cancers(21;0.000238)|all_epithelial(16;5.29e-06)|Lung NSC(20;0.00925)|Colorectal(14;0.0202)|all_lung(20;0.0255)|Ovarian(20;0.127)					TGGTCAGGATCGCATCAAACA	0.408												
RIOK3	8780	broad.mit.edu	37	18	21044566	21044566	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:21044566A>G	uc002kui.3	+	5	1134	c.517A>G	c.(517-519)AGA>GGA	p.R173G	RIOK3_uc010dls.2_Missense_Mutation_p.R173G|RIOK3_uc010xas.1_Missense_Mutation_p.R157G|RIOK3_uc010xat.1_5'Flank	NM_003831	NP_003822	O14730	RIOK3_HUMAN	sudD suppressor of bimD6 homolog	173					chromosome segregation		ATP binding|protein binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(21;0.000106)|all_epithelial(16;6.74e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0202)|Ovarian(20;0.127)					AGTATGTGGGAGAAAGAACAC	0.338												
NPC1	4864	broad.mit.edu	37	18	21123433	21123433	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:21123433A>G	uc002kum.3	-	14	2505	c.2231T>C	c.(2230-2232)GTA>GCA	p.V744A	NPC1_uc010xaz.1_Missense_Mutation_p.V477A|NPC1_uc010xba.1_Missense_Mutation_p.V589A	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	744	SSD.				autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GAAAAATGCTACAGTCTCAGA	0.488												
NPC1	4864	broad.mit.edu	37	18	21128008	21128008	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:21128008A>G	uc002kum.3	-	11	1993	c.1719T>C	c.(1717-1719)GAT>GAC	p.D573D	NPC1_uc010xaz.1_Intron|NPC1_uc010xba.1_Silent_p.D418D	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	573					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GCTTCTCTGTATCATTATAGT	0.448												
NPC1	4864	broad.mit.edu	37	18	21136572	21136572	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:21136572C>T	uc002kum.3	-	8	1235	c.961G>A	c.(961-963)GCG>ACG	p.A321T	NPC1_uc010xaz.1_Missense_Mutation_p.A122T|NPC1_uc010xba.1_Missense_Mutation_p.A166T	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	321					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					CAGCAGGACGCCTCTCCTGGA	0.567												
NPC1	4864	broad.mit.edu	37	18	21140278	21140278	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:21140278G>A	uc002kum.3	-	6	1072	c.798C>T	c.(796-798)GAC>GAT	p.D266D	NPC1_uc010xaz.1_Silent_p.D50D|NPC1_uc010xba.1_Silent_p.D111D	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	266					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					CATACATGGCGTCCAAGCCAA	0.517												
NPC1	4864	broad.mit.edu	37	18	21141338	21141338	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:21141338G>A	uc002kum.3	-	5	891	c.617C>T	c.(616-618)ACT>ATT	p.T206I	NPC1_uc010xaz.1_5'Flank|NPC1_uc010xba.1_Missense_Mutation_p.T51I	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	206					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					AAACACAGGAGTGATGGTAAA	0.373												
LAMA3	3909	broad.mit.edu	37	18	21494727	21494727	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:21494727G>A	uc002kuq.2	+	58	7633	c.7547G>A	c.(7546-7548)GGA>GAA	p.G2516E	LAMA3_uc002kur.2_Missense_Mutation_p.G2460E|LAMA3_uc002kus.3_Missense_Mutation_p.G907E|LAMA3_uc002kut.3_Missense_Mutation_p.G851E	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2516	Laminin G-like 1.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GAAACACCCGGAGTCTATGAC	0.338												
LAMA3	3909	broad.mit.edu	37	18	21523805	21523805	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:21523805A>G	uc002kuq.2	+	69	9166	c.9080A>G	c.(9079-9081)CAC>CGC	p.H3027R	LAMA3_uc002kur.2_Missense_Mutation_p.H2971R|LAMA3_uc002kus.3_Missense_Mutation_p.H1418R|LAMA3_uc002kut.3_Missense_Mutation_p.H1362R	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	3027	Laminin G-like 4.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGGTGTTTCACACGGGCACT	0.473												
ZNF521	25925	broad.mit.edu	37	18	22804898	22804898	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:22804898A>G	uc002kvk.2	-	4	3231	c.2984T>C	c.(2983-2985)ATG>ACG	p.M995T	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.M995T|ZNF521_uc002kvl.2_Missense_Mutation_p.M775T	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	995					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					CTGGAGAGGCATCTTGCAAAT	0.483			T	PAX5	ALL							
SS18	6760	broad.mit.edu	37	18	23614972	23614972	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:23614972A>G	uc002kvm.2	-	9	1171	c.1093T>C	c.(1093-1095)TAC>CAC	p.Y365H	SS18_uc002kvn.2_Missense_Mutation_p.Y334H|SS18_uc010xbf.1_Missense_Mutation_p.Y283H|SS18_uc010xbg.1_Missense_Mutation_p.Y282H|SS18_uc010xbh.1_Missense_Mutation_p.Y282H|SS18_uc010xbi.1_Missense_Mutation_p.Y342H|SS18_uc010dlz.1_Missense_Mutation_p.Y313H	NM_001007559	NP_001007560	Q15532	SSXT_HUMAN	synovial sarcoma translocation, chromosome 18	365	2.|Gln-rich.|2 X 13 AA imperfect tandem repeats.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding		SS18/SSX1(1169)|SS18/SSX2(702)|SS18/SSX4(12)	soft_tissue(1883)|ovary(1)	1884	all_cancers(21;0.000194)|Lung NSC(5;0.000413)|all_lung(6;0.00118)|Ovarian(20;0.124)					GCTTTACCGTAGCCCTGCTGC	0.423			T	SSX1| SSX2	synovial sarcoma							
PSMA8	143471	broad.mit.edu	37	18	23731934	23731934	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:23731934A>G	uc002kvq.2	+	3	474	c.360A>G	c.(358-360)GCA>GCG	p.A120A	PSMA8_uc002kvo.2_Silent_p.A76A|PSMA8_uc002kvp.2_Silent_p.A114A|PSMA8_uc002kvr.2_Silent_p.A88A	NM_144662	NP_653263	Q8TAA3	PSA7L_HUMAN	proteasome alpha 8 subunit isoform 1	120					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	threonine-type endopeptidase activity			skin(1)	1	all_cancers(21;0.000585)|Lung NSC(5;0.00148)|all_lung(6;0.0038)|Ovarian(20;0.124)		OV - Ovarian serous cystadenocarcinoma(3;0.000324)|all cancers(3;0.000954)|LUSC - Lung squamous cell carcinoma(2;0.181)			GCTTCATAGCAACTTTAAAGC	0.388												
PSMA8	143471	broad.mit.edu	37	18	23758901	23758901	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:23758901A>G	uc002kvq.2	+	5	717	c.603A>G	c.(601-603)AAA>AAG	p.K201K	PSMA8_uc002kvo.2_Silent_p.K157K|PSMA8_uc002kvp.2_Silent_p.K195K|PSMA8_uc002kvr.2_Silent_p.K169K	NM_144662	NP_653263	Q8TAA3	PSA7L_HUMAN	proteasome alpha 8 subunit isoform 1	201					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	threonine-type endopeptidase activity			skin(1)	1	all_cancers(21;0.000585)|Lung NSC(5;0.00148)|all_lung(6;0.0038)|Ovarian(20;0.124)		OV - Ovarian serous cystadenocarcinoma(3;0.000324)|all cancers(3;0.000954)|LUSC - Lung squamous cell carcinoma(2;0.181)			TAGCAATAAAAGCTTTGCTAG	0.318												
CHST9	83539	broad.mit.edu	37	18	24722666	24722666	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:24722666T>C	uc002kwd.2	-	1	306	c.108A>G	c.(106-108)GAA>GAG	p.E36E	C18orf16_uc010xbm.1_Intron|CHST9_uc002kwe.2_Silent_p.E36E	NM_031422	NP_113610	Q7L1S5	CHST9_HUMAN	GalNAc-4-sulfotransferase 2	36	Lumenal (Potential).				carbohydrate biosynthetic process|glycosaminoglycan metabolic process|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	extracellular region|Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			ovary(2)|skin(1)	3	all_lung(6;0.0145)|Ovarian(20;0.124)					TATGTTGTTCTTCAATCCAGA	0.328												
DSC3	1825	broad.mit.edu	37	18	28602467	28602467	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:28602467A>G	uc002kwj.3	-	7	932	c.777T>C	c.(775-777)GGT>GGC	p.G259G	DSC3_uc002kwi.3_Silent_p.G259G	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	259	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			CCACTGTAGTACCTACACATT	0.373												
MCART2	147407	broad.mit.edu	37	18	29340185	29340185	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:29340185T>C	uc002kxa.2	-	1	659	c.440A>G	c.(439-441)AAC>AGC	p.N147S		NM_001034172	NP_001029344	Q3SY17	MCAR2_HUMAN	mitochondrial carrier triple repeat 2	147	Solcar 2.				transport	integral to membrane|mitochondrial inner membrane				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.0539)			ATGCTTGTGGTTTTGAAGCAA	0.468												
FAM59A	64762	broad.mit.edu	37	18	29867755	29867755	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:29867755G>A	uc002kxl.2	-	4	861	c.805C>T	c.(805-807)CAC>TAC	p.H269Y	FAM59A_uc002kxk.1_Missense_Mutation_p.H269Y	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	269	CABIT.									ovary(1)|skin(1)	2						TTATAGCGGTGCCCCTCACGG	0.527												
C18orf34	374864	broad.mit.edu	37	18	30846912	30846912	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:30846912A>T	uc002kxn.2	-	13	1519	c.1377T>A	c.(1375-1377)GAT>GAA	p.D459E	C18orf34_uc010dme.1_5'UTR|C18orf34_uc010xbr.1_Missense_Mutation_p.D459E|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.D459E|C18orf34_uc002kxp.2_Missense_Mutation_p.D459E	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	459	Potential.									ovary(1)	1						TTTTGTTAATATCAATCTCAA	0.284												
C18orf34	374864	broad.mit.edu	37	18	30950126	30950126	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:30950126T>C	uc002kxn.2	-	5	378	c.236A>G	c.(235-237)TAC>TGC	p.Y79C	C18orf34_uc010xbr.1_Missense_Mutation_p.Y79C|C18orf34_uc010dmf.1_Missense_Mutation_p.Y79C|C18orf34_uc002kxo.2_Missense_Mutation_p.Y79C|C18orf34_uc002kxp.2_Missense_Mutation_p.Y79C	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	79										ovary(1)	1						TCGACATGGGTAGCTAAAGTA	0.368												
ASXL3	80816	broad.mit.edu	37	18	31251755	31251755	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:31251755A>G	uc010dmg.1	+	7	695	c.640A>G	c.(640-642)ATG>GTG	p.M214V	ASXL3_uc002kxq.2_5'UTR	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	214					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AGATAAAGAAATGAAACATGG	0.333												
ASXL3	80816	broad.mit.edu	37	18	31324921	31324921	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:31324921A>C	uc010dmg.1	+	12	5164	c.5109A>C	c.(5107-5109)CAA>CAC	p.Q1703H	ASXL3_uc002kxq.2_Missense_Mutation_p.Q1410H	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1703					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CTAGTGTACAACAAACACAGA	0.542												
ASXL3	80816	broad.mit.edu	37	18	31325827	31325827	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:31325827T>C	uc010dmg.1	+	12	6070	c.6015T>C	c.(6013-6015)ACT>ACC	p.T2005T	ASXL3_uc002kxq.2_Silent_p.T1712T	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	2005					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TGGGAGGCACTGCACACACAA	0.323												
ELP2	55250	broad.mit.edu	37	18	33721158	33721158	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:33721158T>C	uc002kzk.1	+	6	592	c.582T>C	c.(580-582)AAT>AAC	p.N194N	ELP2_uc010xcg.1_Silent_p.N259N|ELP2_uc002kzl.1_RNA|ELP2_uc002kzm.1_Silent_p.N168N|ELP2_uc010xch.1_Silent_p.N233N|ELP2_uc002kzn.1_Silent_p.N168N|ELP2_uc002kzo.1_Intron	NM_018255	NP_060725	Q6IA86	ELP2_HUMAN	elongator protein 2	194	WD 4.				regulation of transcription from RNA polymerase II promoter	Golgi apparatus|transcription elongation factor complex				breast(2)|ovary(1)|skin(1)	4						CTCAACAAAATGATCAGGTAA	0.328												
ELP2	55250	broad.mit.edu	37	18	33750064	33750064	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:33750064T>C	uc002kzk.1	+	20	2125	c.2115T>C	c.(2113-2115)TGT>TGC	p.C705C	ELP2_uc010xcg.1_Silent_p.C770C|ELP2_uc002kzl.1_RNA|ELP2_uc002kzm.1_Silent_p.C679C|ELP2_uc010xch.1_Silent_p.C700C|ELP2_uc002kzn.1_Silent_p.C635C|ELP2_uc002kzo.1_Silent_p.C635C	NM_018255	NP_060725	Q6IA86	ELP2_HUMAN	elongator protein 2	705	WD 12.				regulation of transcription from RNA polymerase II promoter	Golgi apparatus|transcription elongation factor complex				breast(2)|ovary(1)|skin(1)	4						CTGATGACTGTATTGAGCACA	0.537												
SYT4	6860	broad.mit.edu	37	18	40853990	40853990	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:40853990G>A	uc002law.2	-	2	773	c.404C>T	c.(403-405)TCC>TTC	p.S135F	SYT4_uc010dng.2_Intron|SYT4_uc010xcm.1_Missense_Mutation_p.S117F|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	135	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						ACTCTCAGGGGAAACTGACTC	0.433												
SLC14A2	8170	broad.mit.edu	37	18	43252904	43252904	+	Missense_Mutation	SNP	G	G	A	rs142459777	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:43252904G>A	uc010dnj.2	+	18	2590	c.2269G>A	c.(2269-2271)GGC>AGC	p.G757S	SLC14A2_uc002lbe.2_Missense_Mutation_p.G757S	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	757						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CCAAGTGTACGGCTGTGATAA	0.488												
KIAA1632	57724	broad.mit.edu	37	18	43438628	43438628	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:43438628C>T	uc002lbm.2	-	41	7229	c.7129G>A	c.(7129-7131)GTC>ATC	p.V2377I	KIAA1632_uc010xcq.1_Missense_Mutation_p.V931I|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Missense_Mutation_p.V1252I	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	2377					autophagy						0						AGCAAGTAGACGTAAAGAGTC	0.483												
KIAA1632	57724	broad.mit.edu	37	18	43464646	43464646	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:43464646T>C	uc002lbm.2	-	30	5340	c.5240A>G	c.(5239-5241)TAT>TGT	p.Y1747C	KIAA1632_uc010xcq.1_Missense_Mutation_p.Y301C|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Missense_Mutation_p.Y622C	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	1747					autophagy						0						CACTTGCTCATACAGCTGTAT	0.428												
HAUS1	115106	broad.mit.edu	37	18	43703311	43703311	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:43703311C>A	uc002lbu.2	+	6	727	c.647C>A	c.(646-648)TCC>TAC	p.S216Y	HAUS1_uc002lbv.2_Missense_Mutation_p.S140Y	NM_138443	NP_612452	Q96CS2	HAUS1_HUMAN	coiled-coil domain containing 5	216					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole				ovary(1)	1						TCTCATCAGTCCTTAGTAGCA	0.343												
TCEB3B	51224	broad.mit.edu	37	18	44560527	44560527	+	Missense_Mutation	SNP	A	A	G	rs111815744		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:44560527A>G	uc002lcr.1	-	1	1462	c.1109T>C	c.(1108-1110)GTA>GCA	p.V370A	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	370					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						AGCCATATCTACCTCCTCCAC	0.507												
HDHD2	84064	broad.mit.edu	37	18	44639388	44639388	+	Silent	SNP	C	C	T	rs150843690		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:44639388C>T	uc002lcs.2	-	6	769	c.636G>A	c.(634-636)GGG>GGA	p.G212G	HDHD2_uc002lct.2_Silent_p.G122G	NM_032124	NP_115500	Q9H0R4	HDHD2_HUMAN	haloacid dehalogenase-like hydrolase domain	212							hydrolase activity				0						CATCTTGAGCCCCACCAACAT	0.378												
CXXC1	30827	broad.mit.edu	37	18	47808995	47808995	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:47808995T>C	uc002leq.3	-	15	2672	c.1939A>G	c.(1939-1941)ACT>GCT	p.T647A	MBD1_uc002leg.2_5'Flank|MBD1_uc010dow.1_5'Flank|MBD1_uc010xdi.1_5'Flank|MBD1_uc002leh.3_5'Flank|MBD1_uc002len.2_5'Flank|MBD1_uc002lei.3_5'Flank|MBD1_uc002lej.3_5'Flank|MBD1_uc002lek.3_5'Flank|MBD1_uc002lel.3_5'Flank|MBD1_uc002lem.3_5'Flank|MBD1_uc010xdj.1_5'Flank|MBD1_uc010xdk.1_5'Flank|MBD1_uc010dox.1_5'Flank|MBD1_uc002leo.2_5'Flank|CXXC1_uc002lep.3_Missense_Mutation_p.T504A|CXXC1_uc002ler.3_Missense_Mutation_p.T651A|CXXC1_uc010doy.2_3'UTR	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	647					histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						AGGTCGGTAGTGAGGGGATCG	0.662												
ME2	4200	broad.mit.edu	37	18	48446896	48446896	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:48446896T>C	uc002ley.2	+	8	1061	c.805T>C	c.(805-807)TAC>CAC	p.Y269H	ME2_uc010dpd.2_Missense_Mutation_p.Y269H	NM_002396	NP_002387	P23368	MAOM_HUMAN	malic enzyme 2, NAD(+)-dependent, mitochondrial	269					malate metabolic process	mitochondrial matrix	electron carrier activity|malate dehydrogenase (decarboxylating) activity|malate dehydrogenase (oxaloacetate-decarboxylating) activity|metal ion binding|NAD binding				0		Colorectal(6;0.0273)|all_epithelial(6;0.118)		Colorectal(21;0.0313)|READ - Rectum adenocarcinoma(32;0.105)|STAD - Stomach adenocarcinoma(97;0.184)	NADH(DB00157)	CTTGAGAAAGTACCGAGAAAA	0.338												
CCDC68	80323	broad.mit.edu	37	18	52604149	52604149	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:52604149T>C	uc002lfs.2	-	6	558	c.386A>G	c.(385-387)AAC>AGC	p.N129S	CCDC68_uc002lft.2_Missense_Mutation_p.N129S	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	129	Potential.									skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		CTGGGCCACGTTTCTCAGAGC	0.428												
TCF4	6925	broad.mit.edu	37	18	53254318	53254318	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:53254318T>C	uc002lfz.2	-	2	642	c.30A>G	c.(28-30)TTA>TTG	p.L10L	TCF4_uc010xdx.1_5'Flank|TCF4_uc010dph.1_Silent_p.L10L|TCF4_uc010xdy.1_Intron|TCF4_uc002lga.2_Silent_p.L112L|TCF4_uc010dpi.2_Silent_p.L10L	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	10	Essential for MYOD1 inhibition (By similarity).				positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		TGTCCGTCCCTAAGGCAGCCA	0.413												
TXNL1	9352	broad.mit.edu	37	18	54283492	54283492	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:54283492A>G	uc002lgg.2	-	5	795	c.546T>C	c.(544-546)TTT>TTC	p.F182F	TXNL1_uc010xdz.1_RNA|TXNL1_uc002lgh.2_RNA|TXNL1_uc002lgi.2_Silent_p.F182F|TXNL1_uc002lgj.1_Silent_p.F182F	NM_004786	NP_004777	O43396	TXNL1_HUMAN	thioredoxin-like 1	182	PITH.				cell redox homeostasis|electron transport chain|glycerol ether metabolic process|transport	cytoplasm	electron carrier activity|protein disulfide oxidoreductase activity				0				READ - Rectum adenocarcinoma(59;0.193)|Colorectal(16;0.211)		CTGGCCCTTGAAATTTCATGG	0.328												
WDR7	23335	broad.mit.edu	37	18	54398627	54398627	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:54398627T>C	uc002lgk.1	+	14	1999	c.1788T>C	c.(1786-1788)CGT>CGC	p.R596R	WDR7_uc010dpk.1_RNA|WDR7_uc002lgl.1_Silent_p.R596R	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	596	WD 7.									ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		CATTGGATCGTTGTGTGATGG	0.348												
WDR7	23335	broad.mit.edu	37	18	54483318	54483318	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:54483318C>T	uc002lgk.1	+	20	3458	c.3247C>T	c.(3247-3249)CCT>TCT	p.P1083S	WDR7_uc010dpk.1_RNA|WDR7_uc002lgl.1_Missense_Mutation_p.P1050S	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	1083										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		TGCCTCAGGGCCTGAAGCAAA	0.458												
FECH	2235	broad.mit.edu	37	18	55238724	55238724	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:55238724C>T	uc002lgq.3	-	4	480	c.363G>A	c.(361-363)GAG>GAA	p.E121E	FECH_uc002lgp.3_Silent_p.E127E|FECH_uc002lgr.3_5'UTR	NM_000140	NP_000131	P22830	HEMH_HUMAN	ferrochelatase isoform b precursor	121					generation of precursor metabolites and energy|heme biosynthetic process|protoporphyrinogen IX metabolic process|response to light stimulus	mitochondrial inner membrane|mitochondrial matrix	2 iron, 2 sulfur cluster binding|ferrochelatase activity|ferrous iron binding|protein binding			central_nervous_system(1)	1		Colorectal(73;0.227)				TGCGGTACTGCTCTTGAATCT	0.498												
NARS	4677	broad.mit.edu	37	18	55274419	55274419	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:55274419A>G	uc002lgs.2	-	9	1176	c.948T>C	c.(946-948)TGT>TGC	p.C316C	NARS_uc002lgt.2_Silent_p.C315C|NARS_uc010xea.1_Silent_p.C67C|NARS_uc010xeb.1_RNA|NARS_uc010xec.1_3'UTR|NARS_uc010xed.1_3'UTR	NM_004539	NP_004530	O43776	SYNC_HUMAN	asparaginyl-tRNA synthetase	316					asparaginyl-tRNA aminoacylation	cytosol|soluble fraction	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding				0		Colorectal(73;0.227)			L-Asparagine(DB00174)	ACTGAGCAATACAAAAAACAT	0.438												
ALPK2	115701	broad.mit.edu	37	18	56246328	56246328	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:56246328A>G	uc002lhj.3	-	4	1894	c.1680T>C	c.(1678-1680)GGT>GGC	p.G560G		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	560							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						GATGAAGGGTACCTTCTGTTG	0.527											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
RNF152	220441	broad.mit.edu	37	18	59483265	59483265	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:59483265A>G	uc002lih.1	-	2	844	c.432T>C	c.(430-432)GGT>GGC	p.G144G		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	144					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				GGGGAGCCCCACCTTGCAGAG	0.677												
PHLPP1	23239	broad.mit.edu	37	18	60506064	60506064	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:60506064T>C	uc002lis.2	+	4	463	c.285T>C	c.(283-285)TCT>TCC	p.S95S		NM_194449	NP_919431	O60346	PHLP1_HUMAN	PH domain and leucine rich repeat protein	607	PH.				apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol|membrane|nucleus	metal ion binding|protein serine/threonine phosphatase activity				0						TTAGCTCCTCTGGACCCCAAA	0.428												
VPS4B	9525	broad.mit.edu	37	18	61064287	61064287	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:61064287A>G	uc002lix.2	-	9	1332	c.1072T>C	c.(1072-1074)TCA>CCA	p.S358P	VPS4B_uc010dpx.2_Missense_Mutation_p.S358P|VPS4B_uc010dpy.2_Missense_Mutation_p.S240P|VPS4B_uc010dpz.1_Missense_Mutation_p.S240P	NM_004869	NP_004860	O75351	VPS4B_HUMAN	vacuolar protein sorting factor 4B	358					cell cycle|cell division|cellular membrane organization|endosome to lysosome transport via multivesicular body sorting pathway|intracellular cholesterol transport|protein transport|response to lipid	cytosol|early endosome|late endosome membrane|lysosome|nucleus|vacuolar membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding			ovary(1)	1						TGAGTAGCTGACTGTACTTTC	0.294												
SERPINB10	5273	broad.mit.edu	37	18	61582880	61582880	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:61582880G>A	uc010xev.1	+	2	226	c.136G>A	c.(136-138)GCC>ACC	p.A46T	SERPINB2_uc002ljp.1_Missense_Mutation_p.A187T|SERPINB2_uc002ljq.1_Missense_Mutation_p.A160T|SERPINB10_uc010xew.1_Missense_Mutation_p.A46T	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	46						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				GTATTTGGGCGCCAAAGGTAC	0.438												
DSEL	92126	broad.mit.edu	37	18	65181836	65181836	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:65181836T>C	uc002lke.1	-	2	1264	c.40A>G	c.(40-42)ATG>GTG	p.M14V		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	4						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				CCTGTAAACATTAACGCCATG	0.388												
RTTN	25914	broad.mit.edu	37	18	67697273	67697273	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:67697273G>T	uc002lkp.2	-	42	5788	c.5720C>A	c.(5719-5721)CCT>CAT	p.P1907H	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_Missense_Mutation_p.P995H|RTTN_uc010dqp.2_Missense_Mutation_p.P159H	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	1907							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				TGCTTTCCCAGGCCTCAGAGA	0.398												
RTTN	25914	broad.mit.edu	37	18	67715294	67715294	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:67715294T>C	uc002lkp.2	-	40	5522	c.5454A>G	c.(5452-5454)TTA>TTG	p.L1818L	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_Silent_p.L906L|RTTN_uc010dqp.2_Silent_p.L70L	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	1818							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				GACTACAGCATAAATGTGTTT	0.438												
RTTN	25914	broad.mit.edu	37	18	67781679	67781679	+	Splice_Site	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:67781679A>T	uc002lkp.2	-	27	3751	c.3683_splice	c.e27+1	p.R1228_splice	RTTN_uc002lko.2_Splice_Site|RTTN_uc010xfb.1_Splice_Site_p.R316_splice	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin								binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				TACAAATGGTACCTGTCAGTA	0.343												
NETO1	81832	broad.mit.edu	37	18	70461635	70461635	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:70461635A>G	uc002lkw.2	-	5	758	c.474T>C	c.(472-474)CCT>CCC	p.P158P	NETO1_uc002lkx.1_Silent_p.P157P|NETO1_uc002lky.1_Silent_p.P158P	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	158	Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		CCTTAAAGTCAGGATCTTAAA	0.299												
ZNF407	55628	broad.mit.edu	37	18	72347596	72347596	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:72347596T>C	uc002llw.2	+	1	4678	c.4621T>C	c.(4621-4623)TAT>CAT	p.Y1541H	ZNF407_uc010xfc.1_Missense_Mutation_p.Y1541H|ZNF407_uc010dqu.1_Missense_Mutation_p.Y1541H|ZNF407_uc002llu.2_Missense_Mutation_p.Y1540H	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1541	C2H2-type 14; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		CGTCTGCAAGTATTGTGGGAA	0.507												
TSHZ1	10194	broad.mit.edu	37	18	72999834	72999834	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:72999834G>T	uc002lly.2	+	2	2900	c.2337G>T	c.(2335-2337)GTG>GTT	p.V779V		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	824						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		TGTCCAGCGTGGCTGATTCGG	0.572												
ZNF516	9658	broad.mit.edu	37	18	74091364	74091364	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:74091364C>T	uc010dqx.1	-	3	2941	c.2706G>A	c.(2704-2706)CAG>CAA	p.Q902Q	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	902					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		CCAGGGGCCCCTGTGTGGCCG	0.711												
ZNF236	7776	broad.mit.edu	37	18	74624288	74624288	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:74624288G>T	uc002lmi.2	+	17	3086	c.2888G>T	c.(2887-2889)AGC>ATC	p.S963I	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	963					cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		GAGGACCAGAGCAGGCGCTCT	0.542												
ATP9B	374868	broad.mit.edu	37	18	77133944	77133944	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:77133944C>T	uc002lmx.2	+	28	3131	c.3117C>T	c.(3115-3117)TTC>TTT	p.F1039F	ATP9B_uc002lmw.1_Silent_p.F1039F|ATP9B_uc002lna.2_Silent_p.F65F|ATP9B_uc002lnb.1_3'UTR|ATP9B_uc010drb.2_RNA	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	1039	Helical; (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		AGTCTGAGTTCGTCCACGTGG	0.602												
CTDP1	9150	broad.mit.edu	37	18	77456018	77456018	+	Missense_Mutation	SNP	C	C	T	rs143464787		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:77456018C>T	uc002lnh.1	+	3	587	c.440C>T	c.(439-441)ACG>ATG	p.T147M	CTDP1_uc002lni.1_Missense_Mutation_p.T147M|CTDP1_uc010drd.1_Missense_Mutation_p.T147M	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	147					positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		CCGCTGTCCACGGCGACCGTG	0.617												
ADNP2	22850	broad.mit.edu	37	18	77896522	77896522	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:77896522T>C	uc002lnw.2	+	4	3681	c.3226T>C	c.(3226-3228)TTG>CTG	p.L1076L		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	1076	Homeobox.				cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		AATAGAACTGTTGTCCTCACT	0.318												
MIER2	54531	broad.mit.edu	37	19	308808	308808	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:308808C>T	uc002lok.1	-	11	1111	c.1102G>A	c.(1102-1104)GGA>AGA	p.G368R		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	368					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACGTGGTTCCGGACGGGACG	0.697												
MIER2	54531	broad.mit.edu	37	19	336173	336173	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:336173C>T	uc002lok.1	-	2	19	c.10G>A	c.(10-12)GCC>ACC	p.A4T		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGCGAGGAGGCCTGCGAAGGA	0.647												
THEG	51298	broad.mit.edu	37	19	367122	367122	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:367122G>T	uc002lol.2	-	7	895	c.856C>A	c.(856-858)CCC>ACC	p.P286T	THEG_uc002lom.2_Missense_Mutation_p.P262T	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	286					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTTGGCACGGGGTCCCACTCT	0.587												
SHC2	25759	broad.mit.edu	37	19	422254	422254	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:422254G>A	uc002loq.3	-	11	1512	c.1512C>T	c.(1510-1512)GAC>GAT	p.D504D	SHC2_uc002lop.3_Silent_p.D245D	NM_012435	NP_036567	P98077	SHC2_HUMAN	SHC (Src homology 2 domain containing)	504	SH2.				insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol					0		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGAAGTCCCCGTCAGCTCGAA	0.701												
POLRMT	5442	broad.mit.edu	37	19	617784	617784	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:617784A>G	uc002lpf.1	-	18	3544	c.3488T>C	c.(3487-3489)ATG>ACG	p.M1163T		NM_005035	NP_005026	O00411	RPOM_HUMAN	mitochondrial DNA-directed RNA polymerase	1163	Mediates interaction with TEFM.				transcription initiation from mitochondrial promoter	mitochondrial nucleoid	DNA binding|DNA-directed RNA polymerase activity|protein binding			ovary(1)|pancreas(1)	2		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACCTGGTTCATGACGGAGAC	0.637												
POLRMT	5442	broad.mit.edu	37	19	621761	621761	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:621761A>G	uc002lpf.1	-	10	1993	c.1937T>C	c.(1936-1938)GTA>GCA	p.V646A		NM_005035	NP_005026	O00411	RPOM_HUMAN	mitochondrial DNA-directed RNA polymerase	646					transcription initiation from mitochondrial promoter	mitochondrial nucleoid	DNA binding|DNA-directed RNA polymerase activity|protein binding			ovary(1)|pancreas(1)	2		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGCATGGGTACATCCACCGC	0.677												
PTBP1	5725	broad.mit.edu	37	19	808741	808741	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:808741C>T	uc002lpr.2	+	12	1470	c.1364C>T	c.(1363-1365)ACG>ATG	p.T455M	PTBP1_uc002lpp.2_Missense_Mutation_p.T481M|PTBP1_uc002lpq.2_Missense_Mutation_p.T474M|PTBP1_uc002lps.2_Missense_Mutation_p.T121M|PTBP1_uc002lpt.2_RNA|PTBP1_uc002lpu.1_Missense_Mutation_p.T451M	NM_031991	NP_114368	P26599	PTBP1_HUMAN	polypyrimidine tract-binding protein 1 isoform	455	RRM 4.				negative regulation of muscle cell differentiation|nuclear mRNA splicing, via spliceosome|regulation of alternative nuclear mRNA splicing, via spliceosome	heterogeneous nuclear ribonucleoprotein complex|nucleolus|nucleoplasm	mRNA binding|nucleotide binding|poly-pyrimidine tract binding|protein binding			kidney(1)|skin(1)	2		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCTCGGCCACGCTGCACCTC	0.662												
MED16	10025	broad.mit.edu	37	19	881601	881601	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:881601C>T	uc002lqd.1	-	7	1250	c.1099G>A	c.(1099-1101)GAC>AAC	p.D367N	MED16_uc010drw.1_Missense_Mutation_p.D192N|MED16_uc002lqe.2_Missense_Mutation_p.D356N|MED16_uc002lqf.2_Missense_Mutation_p.D356N|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Missense_Mutation_p.D356N|MED16_uc010xfx.1_Missense_Mutation_p.D212N|MED16_uc010xfy.1_Intron	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	367					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCTTGAGGTCGGTGTTGGTG	0.647												
MED16	10025	broad.mit.edu	37	19	881679	881679	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:881679T>G	uc002lqd.1	-	7	1172	c.1021A>C	c.(1021-1023)ATC>CTC	p.I341L	MED16_uc010drw.1_Missense_Mutation_p.I166L|MED16_uc002lqe.2_Missense_Mutation_p.I330L|MED16_uc002lqf.2_Missense_Mutation_p.I330L|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Missense_Mutation_p.I330L|MED16_uc010xfx.1_Missense_Mutation_p.I186L|MED16_uc010xfy.1_Intron	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	341					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCGATAGGATCCGCCATTTG	0.582												
C19orf26	255057	broad.mit.edu	37	19	1234739	1234739	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:1234739T>C	uc002lrm.2	-	6	715	c.440A>G	c.(439-441)TAC>TGC	p.Y147C		NM_152769	NP_689982	Q8N350	DOS_HUMAN	downstream of Stk11	173						integral to membrane					0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGTCAGTGTGTACCTGCGACA	0.657										HNSCC(14;0.022)		
DAZAP1	26528	broad.mit.edu	37	19	1434758	1434758	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:1434758T>C	uc002lsn.2	+	12	1260	c.1071T>C	c.(1069-1071)AGT>AGC	p.S357S	DAZAP1_uc002lsm.2_3'UTR|DAZAP1_uc002lso.2_Silent_p.S356S|DAZAP1_uc002lsl.1_Silent_p.S356S	NM_018959	NP_061832	Q96EP5	DAZP1_HUMAN	DAZ associated protein 1 isoform b	357	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleotide binding|RNA binding			breast(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGACTTGAGTGGCTTCGGAC	0.597												
MBD3	53615	broad.mit.edu	37	19	1584655	1584655	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:1584655C>T	uc002ltl.1	-	3	314	c.292G>A	c.(292-294)GCG>ACG	p.A98T	MBD3_uc002ltj.2_Missense_Mutation_p.A98T|MBD3_uc002ltk.2_Missense_Mutation_p.A66T	NM_003926	NP_003917	O95983	MBD3_HUMAN	methyl-CpG binding domain protein 3	98					transcription, DNA-dependent	NuRD complex	DNA binding|protein binding			ovary(1)|pancreas(1)|skin(1)	3		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.179)|STAD - Stomach adenocarcinoma(1328;0.18)		ACGGGCAGCGCCGTGTTCAGG	0.592												
ATP8B3	148229	broad.mit.edu	37	19	1802528	1802528	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:1802528T>C	uc002ltw.2	-	11	1255	c.1021A>G	c.(1021-1023)ATT>GTT	p.I341V	ATP8B3_uc002ltv.2_Missense_Mutation_p.I288V|ATP8B3_uc002ltx.2_RNA|ATP8B3_uc002lty.1_Missense_Mutation_p.I89V|ATP8B3_uc002ltz.1_Missense_Mutation_p.I288V	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	341	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGTTGCGAATCCTGCAGCCT	0.567												
AP3D1	8943	broad.mit.edu	37	19	2109159	2109159	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:2109159G>A	uc002luz.2	-	28	3435	c.3212C>T	c.(3211-3213)TCA>TTA	p.S1071L	AP3D1_uc010dsv.2_Missense_Mutation_p.S161L|AP3D1_uc002luy.2_Missense_Mutation_p.S1030L|AP3D1_uc002lva.2_Missense_Mutation_p.S1133L	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	1071					eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GACTTTGATTGAGCTCATGCT	0.552												
AP3D1	8943	broad.mit.edu	37	19	2132554	2132554	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:2132554G>A	uc002luz.2	-	5	601	c.378C>T	c.(376-378)TAC>TAT	p.Y126Y	AP3D1_uc002luy.2_Silent_p.Y126Y|AP3D1_uc002lva.2_Silent_p.Y126Y	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	126					eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACCTGTGTCGTACTGGCTGG	0.592												
TMPRSS9	360200	broad.mit.edu	37	19	2416625	2416625	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:2416625T>C	uc010xgx.1	+	11	1733	c.1733T>C	c.(1732-1734)GTA>GCA	p.V578A		NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	578	Extracellular (Potential).|Peptidase S1 2.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGCGGCGGGTAGTGCTGCAC	0.657												
ZNF57	126295	broad.mit.edu	37	19	2917638	2917638	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:2917638A>G	uc002lwr.2	+	4	1167	c.1019A>G	c.(1018-1020)CAC>CGC	p.H340R	ZNF57_uc010xha.1_Missense_Mutation_p.H308R	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	340	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		AAATGTGAACACTGTGGGAAG	0.458												
ZNF57	126295	broad.mit.edu	37	19	2917975	2917975	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:2917975C>T	uc002lwr.2	+	4	1504	c.1356C>T	c.(1354-1356)CAC>CAT	p.H452H	ZNF57_uc010xha.1_Silent_p.H420H	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	452	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		AATGTGAACACTGTGGGAAGG	0.428												
NFIC	4782	broad.mit.edu	37	19	3452546	3452546	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:3452546C>T	uc010xhi.1	+	8	1213	c.1151C>T	c.(1150-1152)ACG>ATG	p.T384M	NFIC_uc002lxo.2_Missense_Mutation_p.T375M|NFIC_uc010xhh.1_Missense_Mutation_p.T375M|NFIC_uc002lxp.2_Missense_Mutation_p.T384M|NFIC_uc010xhj.1_Missense_Mutation_p.T384M	NM_205843	NP_995315	P08651	NFIC_HUMAN	nuclear factor I/C isoform 2	384					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.8e-05)|Epithelial(107;2.94e-108)|BRCA - Breast invasive adenocarcinoma(158;0.00154)|STAD - Stomach adenocarcinoma(1328;0.191)		CTACCCCAGACGGCCTCCACC	0.652												
C19orf29	58509	broad.mit.edu	37	19	3623876	3623876	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:3623876T>C	uc002lyh.2	-	2	505	c.452A>G	c.(451-453)AAG>AGG	p.K151R	C19orf29_uc010dtn.2_5'Flank|C19orf29_uc002lyi.3_Missense_Mutation_p.K151R|C19orf29_uc010dto.2_RNA	NM_001080543	NP_001074012	Q8WUQ7	CS029_HUMAN	chromosome 19 open reading frame 29	151	Potential.					catalytic step 2 spliceosome	protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCCTGCTGCTTCCGCTCCTC	0.711												
MATK	4145	broad.mit.edu	37	19	3779034	3779034	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:3779034G>A	uc002lyt.2	-	12	1553	c.1153C>T	c.(1153-1155)CGG>TGG	p.R385W	MATK_uc002lyv.2_Missense_Mutation_p.R386W|MATK_uc002lyu.2_Missense_Mutation_p.R344W|MATK_uc010dtq.2_Missense_Mutation_p.R385W	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	385	Protein kinase.				cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		ACGGGCAGCCGGCTTGAGTCT	0.607												
EBI3	10148	broad.mit.edu	37	19	4231313	4231313	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:4231313A>G	uc002lzu.2	+	2	201	c.193A>G	c.(193-195)ACG>GCG	p.T65A		NM_005755	NP_005746	Q14213	IL27B_HUMAN	Epstein-Barr virus induced 3 precursor	65	Fibronectin type-III 1.				humoral immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of interferon-gamma biosynthetic process|T-helper 1 type immune response	extracellular space|plasma membrane	cytokine activity|cytokine receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0336)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTCATTGCCACGTACAGGTC	0.642												
CHAF1A	10036	broad.mit.edu	37	19	4409350	4409350	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:4409350A>C	uc002mal.2	+	3	654	c.554A>C	c.(553-555)GAG>GCG	p.E185A		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	185	Binds to CBX1 chromo shadow domain.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		AAAACAGAGGAGGAGGGTGTT	0.582								Chromatin_Structure				
FEM1A	55527	broad.mit.edu	37	19	4792619	4792619	+	Silent	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:4792619T>G	uc002mbf.2	+	1	892	c.753T>G	c.(751-753)CCT>CCG	p.P251P	uc002mbg.1_RNA	NM_018708	NP_061178	Q9BSK4	FEM1A_HUMAN	fem-1 homolog a	251					regulation of ubiquitin-protein ligase activity	cytoplasm	binding|ubiquitin-protein ligase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		AGGCTCAGCCTGGGCTGCCCC	0.687												
PLIN3	10226	broad.mit.edu	37	19	4852237	4852237	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:4852237G>A	uc002mbj.2	-	5	602	c.425C>T	c.(424-426)ACG>ATG	p.T142M	PLIN3_uc002mbk.2_Missense_Mutation_p.T130M|PLIN3_uc002mbl.3_Missense_Mutation_p.T142M	NM_005817	NP_005808	O60664	PLIN3_HUMAN	mannose 6 phosphate receptor binding protein 1	142					vesicle-mediated transport	endosome membrane|Golgi apparatus|lipid particle	protein binding				0					Galsulfase(DB01279)|Idursulfase(DB01271)	GGTGGCCACCGTGTCCTTGGC	0.627											OREG0025175	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
UHRF1	29128	broad.mit.edu	37	19	4930731	4930731	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:4930731A>G	uc002mbo.2	+	4	580	c.412A>G	c.(412-414)AAT>GAT	p.N138D	UHRF1_uc010xik.1_Intron|UHRF1_uc010duf.2_RNA|UHRF1_uc002mbp.2_Missense_Mutation_p.N151D	NM_001048201	NP_001041666	Q96T88	UHRF1_HUMAN	ubiquitin-like with PHD and ring finger domains	138					cell cycle|cell proliferation|DNA repair|regulation of transcription from RNA polymerase II promoter	nucleus	acid-amino acid ligase activity|methyl-CpG binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0276)		CTCACAGGTCAATGAGTACGT	0.607												
KDM4B	23030	broad.mit.edu	37	19	5110675	5110675	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:5110675T>C	uc002mbq.3	+	10	1187	c.961T>C	c.(961-963)TTC>CTC	p.F321L	KDM4B_uc010xil.1_Missense_Mutation_p.F321L|KDM4B_uc010xim.1_Missense_Mutation_p.F321L|KDM4B_uc002mbr.3_Missense_Mutation_p.F79L	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	321					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						CATGGACGTGTTCGTGCGCAT	0.677												
KDM4B	23030	broad.mit.edu	37	19	5110733	5110733	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:5110733C>T	uc002mbq.3	+	10	1245	c.1019C>T	c.(1018-1020)ACG>ATG	p.T340M	KDM4B_uc010xil.1_Missense_Mutation_p.T340M|KDM4B_uc010xim.1_Missense_Mutation_p.T340M|KDM4B_uc002mbr.3_Missense_Mutation_p.T98M	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	340					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						AAGGACCTCACGGTGCTGGAC	0.662												
PTPRS	5802	broad.mit.edu	37	19	5208286	5208286	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:5208286C>T	uc002mbv.2	-	36	5838	c.5604G>A	c.(5602-5604)GAG>GAA	p.E1868E	PTPRS_uc002mbu.1_Silent_p.E1437E|PTPRS_uc010xin.1_Silent_p.E1410E|PTPRS_uc002mbw.2_Silent_p.E1830E|PTPRS_uc002mbx.2_Silent_p.E1425E|PTPRS_uc002mby.2_Silent_p.E1421E	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1868	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GGCCAAACTGCTCCTTAGTCT	0.602												
ACSBG2	81616	broad.mit.edu	37	19	6187367	6187367	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:6187367C>A	uc002mef.1	+	12	1841	c.1614C>A	c.(1612-1614)CCC>CCA	p.P538P	ACSBG2_uc002mee.1_Silent_p.P351P|ACSBG2_uc002meg.1_Silent_p.P538P|ACSBG2_uc002meh.1_Silent_p.P538P|ACSBG2_uc002mei.1_Silent_p.P488P|ACSBG2_uc010xiz.1_Silent_p.P538P	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	538					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						AGAAGATCCCCATCATCAGTA	0.468												
MLLT1	4298	broad.mit.edu	37	19	6230666	6230666	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:6230666G>A	uc002mek.2	-	4	499	c.335C>T	c.(334-336)CCG>CTG	p.P112L		NM_005934	NP_005925	Q03111	ENL_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	112	YEATS.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|protein binding			skin(1)	1						GTTCACGGGCGGGTTGCCTTC	0.612			T	MLL	AL							
MLLT1	4298	broad.mit.edu	37	19	6230719	6230719	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:6230719C>T	uc002mek.2	-	4	446	c.282G>A	c.(280-282)GAG>GAA	p.E94E		NM_005934	NP_005925	Q03111	ENL_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	94	YEATS.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|protein binding			skin(1)	1						CCTTCCTCGGCTCCTCCTGAA	0.592			T	MLL	AL							
ACER1	125981	broad.mit.edu	37	19	6309743	6309743	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:6309743C>T	uc002mel.2	-	4	531	c.453G>A	c.(451-453)CTG>CTA	p.L151L		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	151	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						AGAGAATGTGCAGGGCAATGC	0.607												
SLC25A23	79085	broad.mit.edu	37	19	6456459	6456459	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:6456459T>A	uc002mex.1	-	4	597	c.455A>T	c.(454-456)GAC>GTC	p.D152V	SLC25A23_uc002mev.2_RNA|SLC25A23_uc010xjd.1_5'Flank	NM_024103	NP_077008	Q9BV35	SCMC3_HUMAN	solute carrier family 25, member 23	152	Mitochondrial intermembrane (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)|pancreas(1)	2						ATACAGCACGTCCTCCACATT	0.592												
C3	718	broad.mit.edu	37	19	6710732	6710732	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:6710732T>C	uc002mfm.2	-	13	1666	c.1604A>G	c.(1603-1605)TAC>TGC	p.Y535C		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	535					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GATCAGCGTGTAGTACGCCAC	0.672												
TRIP10	9322	broad.mit.edu	37	19	6743530	6743530	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:6743530G>A	uc002mfs.2	+	6	500	c.434G>A	c.(433-435)TGC>TAC	p.C145Y	TRIP10_uc010dux.1_Missense_Mutation_p.C145Y|TRIP10_uc002mfr.2_Missense_Mutation_p.C145Y|TRIP10_uc010duy.2_RNA|TRIP10_uc010duz.2_5'UTR	NM_004240	NP_004231	Q15642	CIP4_HUMAN	thyroid hormone receptor interactor 10	145	Potential.|Induction of membrane tubulation.				actin cytoskeleton organization|cell communication|endocytosis|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell projection|cytoskeleton|cytosol|Golgi apparatus|lysosome|perinuclear region of cytoplasm|phagocytic cup	GTPase activator activity|identical protein binding|lipid binding			ovary(1)	1						GAGCGGGACTGCCGGGAGGCA	0.597												
ZNF557	79230	broad.mit.edu	37	19	7083669	7083669	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:7083669C>A	uc002mgb.2	+	8	1671	c.1186C>A	c.(1186-1188)CCC>ACC	p.P396T	ZNF557_uc002mga.2_Missense_Mutation_p.P403T|ZNF557_uc002mgc.2_Missense_Mutation_p.P403T	NM_001044388	NP_001037853	Q8N988	ZN557_HUMAN	zinc finger protein 557 isoform b	396					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2				Lung(535;0.179)		TGGAAAAAAACCCTATGAATG	0.368												
INSR	3643	broad.mit.edu	37	19	7150506	7150506	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:7150506A>G	uc002mgd.1	-	11	2376	c.2267_splice	c.e11+1	p.R756_splice	INSR_uc002mge.1_Intron	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor						activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGTGAGTCATACCTAGGGTCC	0.587												
ZNF358	140467	broad.mit.edu	37	19	7585023	7585023	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:7585023G>A	uc002mgn.2	+	2	1065	c.895G>A	c.(895-897)GCC>ACC	p.A299T	MCOLN1_uc010dvh.1_5'Flank|MCOLN1_uc002mgo.2_5'Flank|MCOLN1_uc002mgp.2_5'Flank	NM_018083	NP_060553	Q9NW07	ZN358_HUMAN	zinc finger protein 358	299	C2H2-type 6.				embryonic forelimb morphogenesis|neural tube development|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						GTGCGGCAAGGCCTTCGGGCA	0.721												
PNPLA6	10908	broad.mit.edu	37	19	7615447	7615447	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:7615447G>A	uc010xjq.1	+	18	2213	c.2018G>A	c.(2017-2019)CGG>CAG	p.R673Q	PNPLA6_uc002mgq.1_Missense_Mutation_p.R625Q|PNPLA6_uc010xjp.1_Missense_Mutation_p.R599Q|PNPLA6_uc002mgr.1_Missense_Mutation_p.R625Q|PNPLA6_uc002mgs.2_Missense_Mutation_p.R664Q	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	664	Cytoplasmic (Potential).|cNMP 3.				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						CTCAATGGGCGGCTGCGTAGC	0.682												
CLEC4G	339390	broad.mit.edu	37	19	7794978	7794978	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:7794978G>A	uc002mhp.3	-	7	623	c.554C>T	c.(553-555)ACG>ATG	p.T185M		NM_198492	NP_940894	Q6UXB4	CLC4G_HUMAN	C-type lectin domain family 4, member G	185	Extracellular (Potential).|C-type lectin.					integral to membrane	protein binding|sugar binding				0						CGCCGCCCACGTCGTCTTTGG	0.677												
CLEC4M	10332	broad.mit.edu	37	19	7831545	7831545	+	Missense_Mutation	SNP	G	G	A	rs140767813		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:7831545G>A	uc002mih.2	+	6	837	c.719G>A	c.(718-720)CGC>CAC	p.R240H	CLEC4M_uc010xjv.1_3'UTR|CLEC4M_uc002mhy.2_3'UTR|CLEC4M_uc010xjw.1_Missense_Mutation_p.R196H|CLEC4M_uc010dvt.2_Missense_Mutation_p.R217H|CLEC4M_uc010dvs.2_Missense_Mutation_p.R239H|CLEC4M_uc010xjx.1_Missense_Mutation_p.R212H|CLEC4M_uc002mhz.2_Missense_Mutation_p.R171H|CLEC4M_uc002mic.2_Missense_Mutation_p.R235H|CLEC4M_uc002mia.2_Missense_Mutation_p.R127H	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	263	Extracellular (Probable).|7.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						CCAACAGAACGCCTGTGCCGC	0.562												
ELAVL1	1994	broad.mit.edu	37	19	8056606	8056606	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:8056606T>C	uc002mjb.2	-	2	261	c.94A>G	c.(94-96)ACC>GCC	p.T32A		NM_001419	NP_001410	Q15717	ELAV1_HUMAN	ELAV-like 1	32	RRM 1.				3'-UTR-mediated mRNA stabilization|multicellular organismal development	cytoplasm|nucleoplasm	identical protein binding|mRNA binding|nucleotide binding				0						TCATCCTGGGTCATGTTCTGA	0.443												
FBN3	84467	broad.mit.edu	37	19	8138042	8138042	+	Silent	SNP	G	G	A	rs116210236	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:8138042G>A	uc002mjf.2	-	61	7863	c.7842C>T	c.(7840-7842)TGC>TGT	p.C2614C	FBN3_uc002mje.2_Silent_p.C410C	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2614	EGF-like 44; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GCCGTCCGGCGCACTCATCCA	0.657												
HNRNPM	4670	broad.mit.edu	37	19	8550915	8550915	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:8550915G>A	uc010dwe.2	+	14	1683	c.1603G>A	c.(1603-1605)GCA>ACA	p.A535T	HNRNPM_uc010xke.1_Missense_Mutation_p.A481T|HNRNPM_uc010dwd.2_Missense_Mutation_p.A496T|HNRNPM_uc002mka.2_Missense_Mutation_p.A400T|HNRNPM_uc002mkb.1_5'Flank	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	535	27 X 6 AA repeats of [GEVSTPAN]-[ILMV]- [DE]-[RH]-[MLVI]-[GAV].				alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						CATGGTGCCCGCAGGTATGGG	0.687												
PRAM1	84106	broad.mit.edu	37	19	8563898	8563898	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:8563898T>C	uc002mkd.2	-	2	814	c.794A>G	c.(793-795)GAC>GGC	p.D265G	PRAM1_uc002mkc.2_Missense_Mutation_p.D265G	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	313	Pro-rich.						lipid binding|protein binding				0						GGCGCTGGAGTCGCGCTTCGG	0.642												
MUC16	94025	broad.mit.edu	37	19	9049048	9049048	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:9049048G>A	uc002mkp.2	-	5	32787	c.32583C>T	c.(32581-32583)TCC>TCT	p.S10861S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10863	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGCTGAACTGGATTCTGCCC	0.478												
MUC16	94025	broad.mit.edu	37	19	9069916	9069916	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:9069916T>C	uc002mkp.2	-	3	17734	c.17530A>G	c.(17530-17532)ATC>GTC	p.I5844V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5846	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGCCTGGTGATGGTTTCTGTG	0.473												
MUC16	94025	broad.mit.edu	37	19	9074359	9074359	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:9074359T>C	uc002mkp.2	-	3	13291	c.13087A>G	c.(13087-13089)ACC>GCC	p.T4363A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4365	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AATGTGTTGGTAGAAGTTATA	0.473												
MUC16	94025	broad.mit.edu	37	19	9074482	9074482	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:9074482T>C	uc002mkp.2	-	3	13168	c.12964A>G	c.(12964-12966)ACA>GCA	p.T4322A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4324	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTGTCTCTGTAGCAGAGCTG	0.502												
MUC16	94025	broad.mit.edu	37	19	9091107	9091107	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:9091107G>A	uc002mkp.2	-	1	912	c.708C>T	c.(706-708)TCC>TCT	p.S236S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	236	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTCAAGGAAGGAAGAATAAA	0.468												
RDH8	50700	broad.mit.edu	37	19	10132286	10132286	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:10132286C>T	uc002mmr.2	+	6	1046	c.797C>T	c.(796-798)ACG>ATG	p.T266M		NM_015725	NP_056540	Q9NYR8	RDH8_HUMAN	retinol dehydrogenase 8 (all-trans)	266					estrogen biosynthetic process|response to stimulus|visual perception	cytoplasm|integral to plasma membrane	binding|estradiol 17-beta-dehydrogenase activity|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(3)|pancreas(1)	4			Epithelial(33;4.24e-05)		Vitamin A(DB00162)	CCGCTGACCACGCTCAAAACC	0.612												
DNMT1	1786	broad.mit.edu	37	19	10252877	10252877	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:10252877A>G	uc002mng.2	-	29	3268	c.3088T>C	c.(3088-3090)TCC>CCC	p.S1030P	DNMT1_uc002mne.2_5'Flank|DNMT1_uc002mnf.2_5'UTR|DNMT1_uc010xlc.1_Missense_Mutation_p.S1046P|DNMT1_uc002mnh.2_Missense_Mutation_p.S925P|DNMT1_uc010xld.1_Missense_Mutation_p.S1030P	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	1030	BAH 2.				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	GCTGGAGTGGACTTGTGGGTG	0.587												
DNMT1	1786	broad.mit.edu	37	19	10284549	10284549	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:10284549T>C	uc002mng.2	-	7	813	c.633A>G	c.(631-633)GAA>GAG	p.E211E	DNMT1_uc010xlc.1_Silent_p.E227E|DNMT1_uc002mnh.2_Silent_p.E106E|DNMT1_uc010xld.1_Silent_p.E211E	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	211	Interaction with DNMT3B.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	ATTCTTACCGTTCTCTGGATG	0.328												
ICAM1	3383	broad.mit.edu	37	19	10394791	10394791	+	Silent	SNP	C	C	T	rs143689328	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:10394791C>T	uc002mnq.2	+	4	1039	c.720C>T	c.(718-720)GAC>GAT	p.D240D	ICAM1_uc010xle.1_Intron|ICAM4_uc002mnr.1_5'Flank|ICAM4_uc002mns.1_5'Flank|ICAM4_uc002mnt.1_5'Flank	NM_000201	NP_000192	P05362	ICAM1_HUMAN	intercellular adhesion molecule 1 precursor	240	Ig-like C2-type 3.|Extracellular (Potential).				adhesion to symbiont|heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|membrane to membrane docking|positive regulation of cellular extravasation|regulation of immune response|regulation of leukocyte mediated cytotoxicity|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|virion attachment, binding of host cell surface receptor	extracellular space|integral to plasma membrane	integrin binding|transmembrane receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.39e-09)|Epithelial(33;2.81e-06)|all cancers(31;6.56e-06)		Natalizumab(DB00108)|Simvastatin(DB00641)	GTTCCCTGGACGGGCTGTTCC	0.637												
TYK2	7297	broad.mit.edu	37	19	10475609	10475609	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:10475609T>C	uc002moc.3	-	8	1505	c.1127A>G	c.(1126-1128)TAC>TGC	p.Y376C	TYK2_uc010dxe.2_Missense_Mutation_p.Y191C|TYK2_uc002mod.2_Missense_Mutation_p.Y376C	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	376	FERM.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			GTCACAGAAGTAGGCCCACAG	0.632												
KEAP1	9817	broad.mit.edu	37	19	10599954	10599954	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:10599954G>A	uc002moq.1	-	5	1778	c.1622C>T	c.(1621-1623)ACA>ATA	p.T541I	KEAP1_uc002mop.1_Intron|KEAP1_uc002mor.1_Missense_Mutation_p.T541I	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	541	Kelch 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			CCACGTCTCTGTTTCCACATC	0.592												
KEAP1	9817	broad.mit.edu	37	19	10602716	10602716	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:10602716A>G	uc002moq.1	-	3	1018	c.862T>C	c.(862-864)TGC>CGC	p.C288R	KEAP1_uc002mop.1_Missense_Mutation_p.C6R|KEAP1_uc002mor.1_Missense_Mutation_p.C288R	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	288				C->S: Abolishes repression of NFE2L2- dependent gene expression. Slows down degradation of NFE2L2.	regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			AGGATCTCGCACTTCTGCAGC	0.637												
KRI1	65095	broad.mit.edu	37	19	10670352	10670352	+	Silent	SNP	G	G	A	rs139920982		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:10670352G>A	uc002moy.1	-	11	987	c.978C>T	c.(976-978)TCC>TCT	p.S326S	KRI1_uc002mow.1_5'UTR|KRI1_uc002mox.1_Silent_p.S322S	NM_023008	NP_075384	Q8N9T8	KRI1_HUMAN	KRI1 homolog	326	Glu-rich.									ovary(1)	1			Epithelial(33;9.2e-06)|all cancers(31;3.9e-05)			TACGGCGCACGGAGGACGCGA	0.622												
SMARCA4	6597	broad.mit.edu	37	19	11134301	11134301	+	Silent	SNP	C	C	T	rs149874634	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:11134301C>T	uc002mqf.3	+	20	3251	c.2967C>T	c.(2965-2967)CCC>CCT	p.P989P	SMARCA4_uc010dxp.2_Silent_p.P989P|SMARCA4_uc010dxo.2_Silent_p.P989P|SMARCA4_uc002mqg.1_Silent_p.P989P|SMARCA4_uc010dxq.2_Silent_p.P989P|SMARCA4_uc010dxr.2_Silent_p.P989P|SMARCA4_uc002mqj.3_Silent_p.P989P|SMARCA4_uc010dxs.2_Silent_p.P989P|SMARCA4_uc010dxt.1_Silent_p.P209P|SMARCA4_uc002mqh.3_Silent_p.P112P|SMARCA4_uc002mqi.1_Silent_p.P192P	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	989					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				CCCAGTTGCCCGAAAAGGTGA	0.597			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome			
ZNF823	55552	broad.mit.edu	37	19	11832903	11832903	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:11832903A>G	uc002msm.2	-	4	1572	c.1446T>C	c.(1444-1446)TGT>TGC	p.C482C	ZNF823_uc010xmd.1_Silent_p.C300C|ZNF823_uc010dyi.1_Silent_p.C438C	NM_001080493	NP_001073962	P16415	ZN823_HUMAN	ZFP-36 for a zinc finger protein	482	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GGTATTTGAAACAACTGAATG	0.373										HNSCC(68;0.2)		
ZNF20	7568	broad.mit.edu	37	19	12243602	12243602	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:12243602G>A	uc002mtf.1	-	4	1542	c.1399C>T	c.(1399-1401)CGA>TGA	p.R467*	ZNF20_uc002mte.1_Nonsense_Mutation_p.R432*|ZNF20_uc002mtg.1_Nonsense_Mutation_p.R467*	NM_021143	NP_066966	P17024	ZNF20_HUMAN	zinc finger protein 20	467	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCATGATATCGAATGGAACTG	0.403												
ZNF799	90576	broad.mit.edu	37	19	12501728	12501728	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:12501728C>T	uc010dyt.2	-	4	1634	c.1484G>A	c.(1483-1485)AGA>AAA	p.R495K	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	495	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						GTGAGTCCTTCTATGTTGAGA	0.378												
ZNF799	90576	broad.mit.edu	37	19	12501734	12501734	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:12501734T>C	uc010dyt.2	-	4	1628	c.1478A>G	c.(1477-1479)CAA>CGA	p.Q493R	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	493	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						CCTTCTATGTTGAGAAAGGTA	0.368												
ZNF799	90576	broad.mit.edu	37	19	12502023	12502023	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:12502023T>C	uc010dyt.2	-	4	1339	c.1189A>G	c.(1189-1191)ATA>GTA	p.I397V	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	397	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TTCCCACATATCTTGCATTTG	0.418												
ZNF443	10224	broad.mit.edu	37	19	12541723	12541723	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:12541723A>G	uc002mtu.2	-	4	1461	c.1263T>C	c.(1261-1263)CAT>CAC	p.H421H		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	421	C2H2-type 11.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						CCTTGCATTTATGAGGTCCAT	0.413												
MAN2B1	4125	broad.mit.edu	37	19	12758258	12758258	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:12758258C>A	uc002mub.2	-	22	2895	c.2819G>T	c.(2818-2820)AGG>ATG	p.R940M	MAN2B1_uc010dyv.1_Missense_Mutation_p.R939M	NM_000528	NP_000519	O00754	MA2B1_HUMAN	mannosidase, alpha, class 2B, member 1	940					protein deglycosylation	lysosome	alpha-mannosidase activity|zinc ion binding			ovary(4)|central_nervous_system(2)	6						CCTTCTCACCCTCAAGTTCAA	0.572												
HOOK2	29911	broad.mit.edu	37	19	12882282	12882282	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:12882282A>G	uc002muy.2	-	8	700	c.529T>C	c.(529-531)TAC>CAC	p.Y177H	HOOK2_uc002muz.2_Missense_Mutation_p.Y177H	NM_013312	NP_037444	Q96ED9	HOOK2_HUMAN	hook homolog 2 isoform 1	177	Sufficient for interaction with microtubules.				early endosome to late endosome transport|endocytosis|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|protein transport	centrosome|FHF complex|microtubule	identical protein binding|microtubule binding			ovary(1)|breast(1)|skin(1)	3						AGGAAATAGTACCTGCGGGAC	0.602												
FARSA	2193	broad.mit.edu	37	19	13035921	13035921	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:13035921G>A	uc002mvs.2	-	8	957	c.909C>T	c.(907-909)GGC>GGT	p.G303G	FARSA_uc002mvt.2_RNA|FARSA_uc010xmv.1_Silent_p.G272G|FARSA_uc010dyy.1_Silent_p.G224G	NM_004461	NP_004452	Q9Y285	SYFA_HUMAN	phenylalanyl-tRNA synthetase, alpha subunit	303					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|phenylalanine-tRNA ligase activity|protein binding|tRNA binding			ovary(1)	1					L-Phenylalanine(DB00120)	AGCCGTAGCCGCCCTGAGAGT	0.622												
RAD23A	5886	broad.mit.edu	37	19	13059009	13059009	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:13059009A>G	uc002mvw.1	+	3	362	c.253A>G	c.(253-255)ACC>GCC	p.T85A	RAD23A_uc002mvx.1_Missense_Mutation_p.T85A|RAD23A_uc002mvz.1_Missense_Mutation_p.T85A|RAD23A_uc002mwa.1_Missense_Mutation_p.T85A|RAD23A_uc002mvy.1_5'UTR|RAD23A_uc010xmw.1_5'UTR	NM_005053	NP_005044	P54725	RD23A_HUMAN	UV excision repair protein RAD23 homolog A	85					interspecies interaction between organisms|nucleotide-excision repair|positive regulation of viral genome replication|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding			central_nervous_system(1)	1						CGGCCAGGGTACCTCAGCACC	0.647								NER				
DAND5	199699	broad.mit.edu	37	19	13084403	13084403	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:13084403A>G	uc002mwc.1	+	2	568	c.525A>G	c.(523-525)ATA>ATG	p.I175M	DAND5_uc010dyz.1_3'UTR	NM_152654	NP_689867	Q8N907	DAND5_HUMAN	dante precursor	175	CTCK.					extracellular region				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(19;1.87e-18)			GGGTGAAGATATCCACCATGC	0.587												
CACNA1A	773	broad.mit.edu	37	19	13323264	13323264	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:13323264C>A	uc010dze.2	-	42	6362	c.6126G>T	c.(6124-6126)AAG>AAT	p.K2042N	CACNA1A_uc010xnd.1_Missense_Mutation_p.K747N|CACNA1A_uc002mwx.3_Missense_Mutation_p.K747N|CACNA1A_uc010dzc.2_Missense_Mutation_p.K1567N|CACNA1A_uc002mwy.3_Missense_Mutation_p.K2041N|CACNA1A_uc002mwv.3_Missense_Mutation_p.K558N	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	2042	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	ATGTGCCCGTCTTCTGGAACA	0.642												
MRI1	84245	broad.mit.edu	37	19	13879676	13879676	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:13879676G>A	uc002mxe.2	+	5	829	c.763G>A	c.(763-765)GAC>AAC	p.D255N	MRI1_uc002mxf.2_Missense_Mutation_p.D208N	NM_001031727	NP_001026897	Q9BV20	MTNA_HUMAN	translation initiation factor eIF-2B subunit	255					L-methionine salvage from methylthioadenosine	cell projection|cytoplasm|nucleus	identical protein binding|S-methyl-5-thioribose-1-phosphate isomerase activity			ovary(1)	1						TGCCAACGGCGACACAGCCAA	0.637												
C19orf53	28974	broad.mit.edu	37	19	13885340	13885340	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:13885340A>G	uc002mxg.2	+	1	84	c.49A>G	c.(49-51)AAG>GAG	p.K17E		NM_014047	NP_054766	Q9UNZ5	L10K_HUMAN	Leydig cell tumor 10 kDa protein	17										ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;7.7e-24)|Epithelial(5;2.53e-19)			CGCAAAGAGTAAGACGGCAGC	0.667												
ZSWIM4	65249	broad.mit.edu	37	19	13941371	13941371	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:13941371C>T	uc002mxh.1	+	13	2666	c.2477C>T	c.(2476-2478)ACG>ATG	p.T826M	ZSWIM4_uc010xng.1_Missense_Mutation_p.T749M	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	826							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			AAGCTGGCGACGCTGGCCCTG	0.711												
CC2D1A	54862	broad.mit.edu	37	19	14040219	14040219	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:14040219T>C	uc002mxo.2	+	25	2846	c.2547T>C	c.(2545-2547)AGT>AGC	p.S849S	CC2D1A_uc002mxp.2_Silent_p.S848S|CC2D1A_uc010dzh.2_Silent_p.S418S	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	849					positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			ATAGCCTCAGTGTGCTGGCGT	0.592												
IL27RA	9466	broad.mit.edu	37	19	14143218	14143218	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:14143218T>C	uc002mxx.2	+	2	544	c.121T>C	c.(121-123)TGC>CGC	p.C41R		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	41	Extracellular (Potential).				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						GCCACTGCAGTGCTACGGAGT	0.627												
ASF1B	55723	broad.mit.edu	37	19	14232432	14232432	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:14232432T>C	uc002mye.2	-	3	486	c.314A>G	c.(313-315)GAG>GGG	p.E105G		NM_018154	NP_060624	Q9NVP2	ASF1B_HUMAN	anti-silencing function 1B	105	Interaction with CHAF1B.|Interaction with histone H3 (By similarity).				cell differentiation|chromatin modification|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus					0						TCGGATGAACTCCTGTCCATG	0.592												
LPHN1	22859	broad.mit.edu	37	19	14268255	14268255	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:14268255G>A	uc010xnn.1	-	15	2864	c.2568C>T	c.(2566-2568)AAC>AAT	p.N856N	LPHN1_uc010xno.1_Silent_p.N851N|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	856	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						GCAGCAGCTCGTTGATGCGGC	0.637												
CD97	976	broad.mit.edu	37	19	14501875	14501875	+	Silent	SNP	C	C	T	rs140836731	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:14501875C>T	uc002myl.2	+	4	453	c.330C>T	c.(328-330)AGC>AGT	p.S110S	CD97_uc002mym.2_Silent_p.S110S|CD97_uc002myn.2_Silent_p.S110S	NM_078481	NP_510966	P48960	CD97_HUMAN	CD97 antigen isoform 1 precursor	110	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				cell adhesion|cell-cell signaling|cellular component movement|immune response|inflammatory response|neuropeptide signaling pathway	extracellular space|integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(3)|breast(1)	4						AGAATGAGAGCGAGAACACCT	0.537												
PKN1	5585	broad.mit.edu	37	19	14554341	14554341	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:14554341G>A	uc002myp.2	+	3	550	c.382G>A	c.(382-384)GTG>ATG	p.V128M	PKN1_uc002myq.2_Missense_Mutation_p.V134M	NM_002741	NP_002732	Q16512	PKN1_HUMAN	protein kinase N1 isoform 2	128	REM 2.				activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						CCTGAGCCGCGTGGCGGGCCT	0.647												
PKN1	5585	broad.mit.edu	37	19	14580254	14580254	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:14580254T>C	uc002myp.2	+	16	2246	c.2078T>C	c.(2077-2079)TTC>TCC	p.F693S	PKN1_uc002myq.2_Missense_Mutation_p.F699S|PKN1_uc002myr.2_Missense_Mutation_p.F33S	NM_002741	NP_002732	Q16512	PKN1_HUMAN	protein kinase N1 isoform 2	693	Protein kinase.				activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						CACGTGTGCTTCGTGATGGAG	0.627												
DNAJB1	3337	broad.mit.edu	37	19	14629004	14629004	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:14629004T>C	uc002myz.1	-	1	198	c.158A>G	c.(157-159)GAC>GGC	p.D53G	DNAJB1_uc010xnr.1_Intron	NM_006145	NP_006136	P25685	DNJB1_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 1	53	J.				chaperone cofactor-dependent protein refolding|response to unfolded protein	cytoplasm|nucleolus	heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(1328;0.0476)		GCTGAGCACGTCGTAGGCCTC	0.677												
OR7A10	390892	broad.mit.edu	37	19	14952342	14952342	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:14952342G>A	uc002mzx.1	-	1	348	c.348C>T	c.(346-348)ACC>ACT	p.T116T		NM_001005190	NP_001005190	O76100	OR7AA_HUMAN	olfactory receptor, family 7, subfamily A,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					AGGCCATCACGGTCAGAAGGA	0.483												
NOTCH3	4854	broad.mit.edu	37	19	15271701	15271701	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:15271701G>T	uc002nan.2	-	33	6814	c.6738C>A	c.(6736-6738)ACC>ACA	p.T2246T		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	2246	Cytoplasmic (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			CGGGGGATGGGGTCAGGTAAG	0.682												
NOTCH3	4854	broad.mit.edu	37	19	15302962	15302962	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:15302962C>T	uc002nan.2	-	4	564	c.488G>A	c.(487-489)CGG>CAG	p.R163Q	NOTCH3_uc002nao.1_Missense_Mutation_p.R163Q	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	163	Extracellular (Potential).|EGF-like 4; calcium-binding (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			CTCACCCACCCGGCACTCATC	0.672												
BRD4	23476	broad.mit.edu	37	19	15376427	15376427	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:15376427A>G	uc002nar.2	-	5	809	c.587T>C	c.(586-588)GTA>GCA	p.V196A	BRD4_uc002nas.2_Missense_Mutation_p.V196A|BRD4_uc002nat.3_Missense_Mutation_p.V196A|BRD4_uc002nau.3_Missense_Mutation_p.V196A	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	196					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			TGTGTTTGGTACCGTGGAAAC	0.572			T	NUT|C15orf55	lethal midline carcinoma of young people							
AKAP8	10270	broad.mit.edu	37	19	15465764	15465764	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:15465764T>C	uc002nav.2	-	14	2102	c.2041A>G	c.(2041-2043)ACT>GCT	p.T681A	AKAP8_uc010dzy.2_Missense_Mutation_p.T230A	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	681					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						TCTGCATCAGTTTGTTCCACT	0.547												
AKAP8	10270	broad.mit.edu	37	19	15479061	15479061	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:15479061T>C	uc002nav.2	-	9	1206	c.1145A>G	c.(1144-1146)GAC>GGC	p.D382G	AKAP8_uc010dzy.2_5'UTR|AKAP8_uc010dzz.1_RNA|AKAP8_uc010xog.1_Missense_Mutation_p.D196G	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	382					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						GGCTGCACGGTCCCGCGtcct	0.458												
OR10H2	26538	broad.mit.edu	37	19	15839069	15839069	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:15839069C>T	uc002nbm.2	+	1	236	c.216C>T	c.(214-216)CTC>CTT	p.L72L		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					CCGAGATCCTCTACACCGTGG	0.622												
AP1M1	8907	broad.mit.edu	37	19	16319907	16319907	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:16319907C>T	uc002ndu.2	+	5	638	c.465C>T	c.(463-465)AAC>AAT	p.N155N	AP1M1_uc002ndv.2_Silent_p.N155N|AP1M1_uc010xpd.1_Silent_p.N155N	NM_032493	NP_115882	Q9BXS5	AP1M1_HUMAN	adaptor-related protein complex 1, mu 1 subunit	155					cellular membrane organization|endosome to melanosome transport|interspecies interaction between organisms|intracellular protein transport|melanosome organization|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(3)|breast(1)	4						CCGTCACCAACGCGGTGTCCT	0.587												
CALR3	125972	broad.mit.edu	37	19	16596064	16596064	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:16596064G>A	uc002ned.2	-	4	465	c.402C>T	c.(400-402)CCC>CCT	p.P134P	MED26_uc002nee.2_Intron	NM_145046	NP_659483	Q96L12	CALR3_HUMAN	calreticulin 3 precursor	134	N-domain.				protein folding	endoplasmic reticulum lumen	calcium ion binding|sugar binding|unfolded protein binding				0						CACAAATATCGGGTCCTACAA	0.308												
MED26	9441	broad.mit.edu	37	19	16688193	16688193	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:16688193G>A	uc002nen.1	-	3	709	c.448C>T	c.(448-450)CGG>TGG	p.R150W	MED26_uc002nee.2_RNA	NM_004831	NP_004822	O95402	MED26_HUMAN	mediator complex subunit 26	150					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|RNA polymerase II transcription cofactor activity|transcription coactivator activity			ovary(2)	2						TGGTCACCCCGGCGCTTGCGG	0.701												
SIN3B	23309	broad.mit.edu	37	19	16942437	16942437	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:16942437A>G	uc002ney.1	+	3	374	c.360A>G	c.(358-360)ATA>ATG	p.I120M	SIN3B_uc002new.2_Missense_Mutation_p.I120M|SIN3B_uc002nex.2_Missense_Mutation_p.I52M|SIN3B_uc002nez.1_Missense_Mutation_p.I120M	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	120					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						AGTTAAACATACAGTCGCCTC	0.507												
CPAMD8	27151	broad.mit.edu	37	19	17039982	17039982	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:17039982G>A	uc002nfb.2	-	24	3087	c.3055C>T	c.(3055-3057)CGC>TGC	p.R1019C		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	972						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						ACATCAAAGCGGGTGAGGCGC	0.587												
CPAMD8	27151	broad.mit.edu	37	19	17081839	17081839	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:17081839G>A	uc002nfb.2	-	18	2248	c.2216C>T	c.(2215-2217)ACG>ATG	p.T739M		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	692						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CACCAGTCCCGTTTCCTAGGC	0.602												
MYO9B	4650	broad.mit.edu	37	19	17312954	17312954	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:17312954G>A	uc010eak.2	+	28	4830	c.4678G>A	c.(4678-4680)GTG>ATG	p.V1560M	MYO9B_uc002nfi.2_Missense_Mutation_p.V1560M|MYO9B_uc002nfj.1_Missense_Mutation_p.V1560M|MYO9B_uc002nfl.1_Missense_Mutation_p.V109M	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	1560	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						GAAGATCCACGTGGGCTACAA	0.587												
ANKLE1	126549	broad.mit.edu	37	19	17394238	17394238	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:17394238T>C	uc002nga.2	+	5	941	c.665T>C	c.(664-666)GTC>GCC	p.V222A	ANKLE1_uc010xpm.1_RNA|ANKLE1_uc010eao.1_Missense_Mutation_p.V244A|ANKLE1_uc010xpn.1_Missense_Mutation_p.V276A|ANKLE1_uc002nfy.2_Missense_Mutation_p.V211A|ANKLE1_uc002nfz.2_5'UTR	NM_152363	NP_689576	Q8NAG6	ANKL1_HUMAN	ankyrin repeat domain 41	222						nuclear envelope					0						GCCTCTTTCGTCACAGCGGTT	0.627												
FAM129C	199786	broad.mit.edu	37	19	17653018	17653018	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:17653018G>A	uc010xpr.1	+	11	1475	c.1337G>A	c.(1336-1338)CGG>CAG	p.R446Q	FAM129C_uc010xpq.1_Missense_Mutation_p.R446Q|FAM129C_uc002ngy.3_Missense_Mutation_p.R172Q|FAM129C_uc010xpu.1_Missense_Mutation_p.R172Q|FAM129C_uc002ngz.3_RNA|FAM129C_uc010eaw.2_Missense_Mutation_p.R172Q|FAM129C_uc002nhb.2_Missense_Mutation_p.R45Q	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	446											0						GAGCGGAGCCGGGGGCGCTTG	0.622												
GLT25D1	79709	broad.mit.edu	37	19	17679457	17679457	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:17679457C>A	uc002nhc.1	+	5	776	c.764C>A	c.(763-765)CCT>CAT	p.P255H	GLT25D1_uc010eax.1_Missense_Mutation_p.P23H	NM_024656	NP_078932	Q8NBJ5	GT251_HUMAN	glycosyltransferase 25 domain containing 1	255					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity				0						TTCTACCCACCTCACCCTGAC	0.602												
UNC13A	23025	broad.mit.edu	37	19	17750650	17750650	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:17750650C>T	uc002nhd.2	-	23	3119	c.3119G>A	c.(3118-3120)CGG>CAG	p.R1040Q		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	952					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						ACTTCCTACCCGGTACATGGA	0.567												
FCHO1	23149	broad.mit.edu	37	19	17885203	17885203	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:17885203C>T	uc010ebb.2	+	12	1025	c.836C>T	c.(835-837)GCG>GTG	p.A279V	FCHO1_uc002nhg.3_Missense_Mutation_p.A279V|FCHO1_uc002nhh.2_Missense_Mutation_p.A279V|FCHO1_uc010xpw.1_Missense_Mutation_p.A229V|FCHO1_uc010ebc.1_Missense_Mutation_p.A286V	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	279										breast(1)	1						CTATCCTCAGCGATGAAACGT	0.627												
B3GNT3	10331	broad.mit.edu	37	19	17922425	17922425	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:17922425T>C	uc002nhk.1	+	3	698	c.613T>C	c.(613-615)TTC>CTC	p.F205L	B3GNT3_uc002nhl.1_Missense_Mutation_p.F205L|B3GNT3_uc010ebd.1_Missense_Mutation_p.F205L|B3GNT3_uc010ebe.1_Missense_Mutation_p.F205L	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	205	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						CAACGCCAGCTTCGTGCTCAA	0.582												
RPL18A	6142	broad.mit.edu	37	19	17973010	17973010	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:17973010C>A	uc002nhp.1	+	3	341	c.306C>A	c.(304-306)ACC>ACA	p.T102T	SNORA68_uc002nhq.1_5'Flank	NM_000980	NP_000971	Q02543	RL18A_HUMAN	ribosomal protein L18a	102					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0						ACCTGACCACCGCAGGCGCTG	0.617												
MAST3	23031	broad.mit.edu	37	19	18252739	18252739	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:18252739C>T	uc002nhz.3	+	20	2166	c.2166C>T	c.(2164-2166)TTC>TTT	p.F722F		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	722							ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						CTCCTACCTTCGCTGAAAGGA	0.522												
PIK3R2	5296	broad.mit.edu	37	19	18274130	18274130	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:18274130C>T	uc002nia.1	+	11	1860	c.1348C>T	c.(1348-1350)CAC>TAC	p.H450Y	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018	O00459	P85B_HUMAN	phosphoinositide-3-kinase, regulatory subunit 2	450					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|negative regulation of anti-apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	GTPase activator activity|phosphatidylinositol 3-kinase regulator activity|protein binding			lung(2)|stomach(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)	6						TAAGGTCTATCACCAGCAGTA	0.572												
PIK3R2	5296	broad.mit.edu	37	19	18279691	18279691	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:18279691A>G	uc002nia.1	+	15	2476	c.1964A>G	c.(1963-1965)TAC>TGC	p.Y655C	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018	O00459	P85B_HUMAN	phosphoinositide-3-kinase, regulatory subunit 2	655	SH2 2.				fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|negative regulation of anti-apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	GTPase activator activity|phosphatidylinositol 3-kinase regulator activity|protein binding			lung(2)|stomach(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)	6						CGGGGCTGCTACGCCTGCTCC	0.652												
IFI30	10437	broad.mit.edu	37	19	18288041	18288041	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:18288041C>T	uc002nic.1	+	5	648	c.575C>T	c.(574-576)GCC>GTC	p.A192V	PIK3R2_uc002nib.1_RNA	NM_006332	NP_006323	P13284	GILT_HUMAN	interferon, gamma-inducible protein 30	192					antigen processing and presentation of exogenous peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway	cell junction|extracellular region|lysosome	oxidoreductase activity, acting on a sulfur group of donors				0						CACGCCAACGCCCAGCGGACA	0.597												
SSBP4	170463	broad.mit.edu	37	19	18543405	18543405	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:18543405T>C	uc002niy.2	+	11	979	c.741T>C	c.(739-741)AGT>AGC	p.S247S	SSBP4_uc002niz.2_Silent_p.S225S	NM_032627	NP_116016	Q9BWG4	SSBP4_HUMAN	single stranded DNA binding protein 4 isoform a	247	Pro-rich.					nucleus	single-stranded DNA binding				0						CCAGCCCCAGTGGAAACTCGG	0.662												
ELL	8178	broad.mit.edu	37	19	18557206	18557206	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:18557206C>T	uc002njh.2	-	10	1689	c.1617G>A	c.(1615-1617)CTG>CTA	p.L539L	ELL_uc010ebq.2_Silent_p.L482L|ELL_uc002njg.2_Silent_p.L406L	NM_006532	NP_006523	P55199	ELL_HUMAN	elongation factor RNA polymerase II	539					positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	Cajal body|nuclear speck|transcription elongation factor complex	protein binding			lung(1)	1				GBM - Glioblastoma multiforme(1328;7.81e-07)		TGCGGGCGTGCAGGTCGCGGT	0.632			T	MLL	AL							
FKBP8	23770	broad.mit.edu	37	19	18648475	18648475	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:18648475C>T	uc002njk.1	-	6	991	c.878G>A	c.(877-879)CGC>CAC	p.R293H	FKBP8_uc002nji.1_Missense_Mutation_p.R131H|FKBP8_uc010xqi.1_Missense_Mutation_p.R322H|FKBP8_uc002njj.1_Missense_Mutation_p.R294H|FKBP8_uc002njl.1_Missense_Mutation_p.R294H|FKBP8_uc002njm.1_Missense_Mutation_p.R293H|FKBP8_uc010ebr.1_Missense_Mutation_p.R132H|FKBP8_uc002njn.2_RNA	NM_012181	NP_036313	Q14318	FKBP8_HUMAN	FK506-binding protein 8	293	TPR 2.				apoptosis|interspecies interaction between organisms|intracellular signal transduction|protein folding	integral to endoplasmic reticulum membrane|mitochondrial membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|protein binding			ovary(1)	1						GCTGCAGGAGCGCAGGGCTGC	0.632												
CRTC1	23373	broad.mit.edu	37	19	18886579	18886579	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:18886579G>A	uc002nkb.3	+	13	1729	c.1641G>A	c.(1639-1641)TCG>TCA	p.S547S	CRTC1_uc010ebv.2_Silent_p.S563S|CRTC1_uc010ebw.2_Silent_p.S383S|CRTC1_uc002nkc.3_Silent_p.S245S	NM_015321	NP_056136	Q6UUV9	CRTC1_HUMAN	mucoepidermoid carcinoma translocated 1 isoform	547					interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding	p.S547S(1)	CRTC1/MAML2(516)	salivary_gland(474)|lung(35)|thyroid(4)|breast(3)|skin(2)|ovary(1)	519						TGCCGGACTCGCAGCAACTGG	0.687												
COMP	1311	broad.mit.edu	37	19	18893913	18893913	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:18893913G>A	uc002nke.2	-	18	2214	c.2178C>T	c.(2176-2178)TGC>TGT	p.C726C	COMP_uc002nkd.2_Silent_p.C693C|COMP_uc010xqj.1_Silent_p.C673C	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	726	Mediates cell survival and induction of the IAP family of survival proteins.|TSP C-terminal.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						CCTGGGAGAAGCAGAAGACCC	0.652												
MEF2B	100271849	broad.mit.edu	37	19	19260114	19260114	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:19260114G>A	uc002nlm.2	-	3	293	c.179C>T	c.(178-180)ACG>ATG	p.T60M	MEF2B_uc002nln.2_Missense_Mutation_p.T107M|MEF2B_uc002nll.2_Missense_Mutation_p.T60M|LOC729991-MEF2B_uc010xqo.1_Missense_Mutation_p.T60M|LOC729991-MEF2B_uc010xqp.1_Missense_Mutation_p.T60M|LOC729991-MEF2B_uc002nlo.2_Missense_Mutation_p.T60M|LOC729991-MEF2B_uc002nlp.2_Missense_Mutation_p.T60M|MEF2B_uc002nlk.2_Missense_Mutation_p.T60M	NM_001145785	NP_001139257			myocyte enhancer factor 2B isoform a											skin(1)	1			OV - Ovarian serous cystadenocarcinoma(5;0.00011)|Epithelial(12;0.00412)			GTCCATGTCCGTGCTGGCATA	0.587												
RFXANK	8625	broad.mit.edu	37	19	19308408	19308408	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:19308408C>T	uc002nls.2	+	6	921	c.416C>T	c.(415-417)ACC>ATC	p.T139I	RFXANK_uc002nlt.2_Missense_Mutation_p.T116I|RFXANK_uc002nlu.2_Missense_Mutation_p.T117I|RFXANK_uc002nlv.2_Missense_Mutation_p.T139I|RFXANK_uc002nlw.2_Missense_Mutation_p.T138I	NM_003721	NP_003712	O14593	RFXK_HUMAN	regulatory factor X-associated	139	ANK 2.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(2)	2			Epithelial(12;0.00228)			GAGATTGAGACCGTTCGCTTC	0.657												
GATAD2A	54815	broad.mit.edu	37	19	19611975	19611975	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:19611975G>A	uc010xqt.1	+	9	1562	c.1250G>A	c.(1249-1251)TGT>TAT	p.C417Y	GATAD2A_uc010xqu.1_Missense_Mutation_p.C46Y|GATAD2A_uc010xqv.1_Missense_Mutation_p.C437Y|GATAD2A_uc010xqw.1_Missense_Mutation_p.C245Y	NM_017660	NP_060130	Q86YP4	P66A_HUMAN	GATA zinc finger domain containing 2A	417	GATA-type.				DNA methylation|negative regulation of transcription, DNA-dependent	nuclear speck|NuRD complex	protein binding, bridging|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCCTACATGTGTGCACAGTGC	0.617												
ZNF101	94039	broad.mit.edu	37	19	19788767	19788767	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:19788767C>T	uc002nni.1	+	2	208	c.98C>T	c.(97-99)ACG>ATG	p.T33M	ZNF101_uc010ecg.1_Translation_Start_Site|ZNF101_uc002nnj.1_Translation_Start_Site	NM_033204	NP_149981	Q8IZC7	ZN101_HUMAN	zinc finger protein 101	33	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AGAGATGTGACGCTGGAAACC	0.498												
ZNF101	94039	broad.mit.edu	37	19	19790797	19790797	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:19790797T>C	uc002nni.1	+	4	1109	c.999T>C	c.(997-999)ACT>ACC	p.T333T	ZNF101_uc010ecg.1_Silent_p.T213T|ZNF101_uc002nnj.1_Silent_p.T213T	NM_033204	NP_149981	Q8IZC7	ZN101_HUMAN	zinc finger protein 101	333					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GAGCTCACACTGGAGAAAGAC	0.373												
ZNF682	91120	broad.mit.edu	37	19	20117187	20117187	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:20117187T>C	uc002noq.2	-	4	1247	c.1124A>G	c.(1123-1125)GAC>GGC	p.D375G	ZNF682_uc002noo.2_Missense_Mutation_p.D343G|ZNF682_uc002nop.2_Missense_Mutation_p.D343G|ZNF682_uc010eck.2_Missense_Mutation_p.D299G	NM_033196	NP_149973	O95780	ZN682_HUMAN	zinc finger protein 682 isoform 1	375	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						AAAGACTTTGTCACATTTTTC	0.358												
ZNF486	90649	broad.mit.edu	37	19	20308530	20308530	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:20308530T>C	uc002nou.2	+	4	1068	c.1011T>C	c.(1009-1011)CTT>CTC	p.L337L		NM_052852	NP_443084	Q96H40	ZN486_HUMAN	zinc finger protein 486	337	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCTCGATCCTTAGTAAACATG	0.408												
ZNF430	80264	broad.mit.edu	37	19	21240516	21240516	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:21240516C>T	uc002npj.2	+	5	1512	c.1402C>T	c.(1402-1404)CGG>TGG	p.R468W	ZNF430_uc002npk.2_Missense_Mutation_p.R467W	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	468	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						AGCCTTTAACCGGTCCCCAAA	0.388												
ZNF714	148206	broad.mit.edu	37	19	21299731	21299731	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:21299731A>G	uc002npo.3	+	5	621	c.261A>G	c.(259-261)AAA>AAG	p.K87K	ZNF714_uc002npl.2_5'UTR|ZNF714_uc010ecp.1_Silent_p.K39K|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	87					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGTTAAGAAAAGGCTCCGCAA	0.373												
ZNF714	148206	broad.mit.edu	37	19	21300315	21300315	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:21300315A>G	uc002npo.3	+	6	1208	c.848A>G	c.(847-849)AAA>AGA	p.K283R	ZNF714_uc002npl.2_Missense_Mutation_p.K128R|ZNF714_uc010ecp.1_Missense_Mutation_p.K234R|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	283					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTTAAAGAAAAACCCTACAAA	0.343												
ZNF708	7562	broad.mit.edu	37	19	21477133	21477133	+	Missense_Mutation	SNP	G	G	A	rs148687204	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:21477133G>A	uc002npq.1	-	4	833	c.635C>T	c.(634-636)ACG>ATG	p.T212M	ZNF708_uc002npr.1_Missense_Mutation_p.T148M|ZNF708_uc010ecs.1_Missense_Mutation_p.T148M	NM_021269	NP_067092	P17019	ZN708_HUMAN	zinc finger protein 708	212	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(4)|skin(2)	6						CTTATGATTCGTAAGGTTTGA	0.338												
ZNF493	284443	broad.mit.edu	37	19	21606088	21606088	+	Silent	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:21606088T>G	uc002npx.2	+	2	523	c.243T>G	c.(241-243)TCT>TCG	p.S81S	ZNF493_uc002npw.2_Silent_p.S209S|ZNF493_uc002npy.2_Silent_p.S81S	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	81					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GAGAGAATTCTTACCGATGTG	0.348												
ZNF493	284443	broad.mit.edu	37	19	21606418	21606418	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:21606418A>G	uc002npx.2	+	2	853	c.573A>G	c.(571-573)AAA>AAG	p.K191K	ZNF493_uc002npw.2_Silent_p.K319K|ZNF493_uc002npy.2_Silent_p.K191K	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	191					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATGGAGAAAAACCCTATAAAT	0.338												
ZNF43	7594	broad.mit.edu	37	19	21991830	21991830	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:21991830T>C	uc002nqj.2	-	4	1139	c.1009A>G	c.(1009-1011)ACT>GCT	p.T337A	ZNF43_uc010ecv.2_Missense_Mutation_p.T331A|ZNF43_uc002nql.2_Missense_Mutation_p.T331A|ZNF43_uc002nqm.2_Missense_Mutation_p.T331A|ZNF43_uc002nqk.2_Missense_Mutation_p.T267A	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	337					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TTCTCTCCAGTATGAATTCTC	0.378												
ZNF208	7757	broad.mit.edu	37	19	22156465	22156465	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:22156465T>C	uc002nqp.2	-	4	1520	c.1371A>G	c.(1369-1371)GAA>GAG	p.E457E	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_Splice_Site	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CTTTGCCACATTCTTCACATT	0.378												
ZNF257	113835	broad.mit.edu	37	19	22270970	22270970	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:22270970A>G	uc010ecx.2	+	4	587	c.418A>G	c.(418-420)ACC>GCC	p.T140A	ZNF257_uc010ecy.2_Missense_Mutation_p.T108A	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	140					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				TCTGATAACTACCCAGAGCAA	0.318												
ZNF257	113835	broad.mit.edu	37	19	22271493	22271493	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:22271493A>G	uc010ecx.2	+	4	1110	c.941A>G	c.(940-942)AAA>AGA	p.K314R	ZNF257_uc010ecy.2_Missense_Mutation_p.K282R	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	314					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				ACTGGAGAGAAACCCTACAAA	0.418												
ZNF676	163223	broad.mit.edu	37	19	22363441	22363441	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:22363441T>C	uc002nqs.1	-	3	1396	c.1078A>G	c.(1078-1080)ACT>GCT	p.T360A		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	360					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TTCTCTCCAGTATGAATAATC	0.393												
ZNF676	163223	broad.mit.edu	37	19	22363694	22363694	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:22363694A>G	uc002nqs.1	-	3	1143	c.825T>C	c.(823-825)CAT>CAC	p.H275H		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	275	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TCTCTTCAGCATGAATTGCCT	0.398												
ZNF91	7644	broad.mit.edu	37	19	23544026	23544026	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:23544026A>G	uc002nre.2	-	4	1868	c.1755T>C	c.(1753-1755)CAT>CAC	p.H585H	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Silent_p.H553H	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	585	C2H2-type 16.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GACTTGAGGAATGATTAAAAG	0.353												
C19orf12	83636	broad.mit.edu	37	19	30199167	30199167	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:30199167C>T	uc002nsk.2	-	2	585	c.154G>A	c.(154-156)GCC>ACC	p.A52T	C19orf12_uc002nsj.2_Missense_Mutation_p.A63T|C19orf12_uc002nsl.2_Intron|C19orf12_uc002nsm.2_RNA	NM_031448	NP_113636	Q9NSK7	CS012_HUMAN	hypothetical protein LOC83636 isoform 2	52	Helical; (Potential).					integral to membrane					0	Ovarian(5;0.000567)|Breast(6;0.0203)|Esophageal squamous(110;0.239)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|STAD - Stomach adenocarcinoma(5;1.7e-06)|Lung(7;0.0435)|LUAD - Lung adenocarcinoma(5;0.0989)|BRCA - Breast invasive adenocarcinoma(6;0.183)			TTACCAACGGCGAGTCCCGGT	0.547												
ZNF536	9745	broad.mit.edu	37	19	30935840	30935840	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:30935840G>A	uc002nsu.1	+	2	1509	c.1371G>A	c.(1369-1371)GAG>GAA	p.E457E	ZNF536_uc010edd.1_Silent_p.E457E	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	457					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GCAAGGGCGAGCTGCCCATGA	0.642												
RHPN2	85415	broad.mit.edu	37	19	33471032	33471032	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:33471032C>T	uc002nuf.2	-	15	1997	c.1931G>A	c.(1930-1932)GGC>GAC	p.G644D	RHPN2_uc010xro.1_Missense_Mutation_p.G493D|RHPN2_uc002nue.2_Missense_Mutation_p.G374D	NM_033103	NP_149094	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	644					signal transduction	perinuclear region of cytoplasm	protein binding			central_nervous_system(5)|ovary(1)	6	Esophageal squamous(110;0.137)					CTTGTTGGTGCCCCAACTCAG	0.507												
WDR88	126248	broad.mit.edu	37	19	33647305	33647305	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:33647305G>A	uc002nui.2	+	7	932	c.854G>A	c.(853-855)GGC>GAC	p.G285D		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	285	WD 5.									ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					ACCTTCAGTGGCCATTTCCTG	0.478												
LRP3	4037	broad.mit.edu	37	19	33693826	33693826	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:33693826A>G	uc010edh.2	+	3	287	c.194A>G	c.(193-195)AAC>AGC	p.N65S	LRP3_uc010xrp.1_5'UTR|LRP3_uc002nuk.3_5'Flank	NM_002333	NP_002324	O75074	LRP3_HUMAN	low density lipoprotein receptor-related protein	65	Extracellular (Potential).|CUB 1.				receptor-mediated endocytosis	coated pit|integral to membrane	receptor activity			pancreas(2)|ovary(1)	3	Esophageal squamous(110;0.137)					TGGCCCCTCAACTACCCGCCA	0.647												
SLC7A10	56301	broad.mit.edu	37	19	33700230	33700230	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:33700230A>G	uc002num.2	-	10	1572	c.1425T>C	c.(1423-1425)TGT>TGC	p.C475C	SLC7A10_uc002nul.2_Silent_p.C322C	NM_019849	NP_062823	Q9NS82	AAA1_HUMAN	solute carrier family 7, member 10	475					blood coagulation|cellular nitrogen compound metabolic process|ion transport|leukocyte migration	integral to plasma membrane	L-serine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(110;0.137)					GTCTGTGCACACACTTTGGTT	0.597												
KIAA0355	9710	broad.mit.edu	37	19	34818956	34818956	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:34818956T>C	uc002nvd.3	+	6	1863	c.1004T>C	c.(1003-1005)ATG>ACG	p.M335T		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	335										ovary(1)	1	Esophageal squamous(110;0.162)					CCGCAGCCCATGCAGTGTGAG	0.612												
MAG	4099	broad.mit.edu	37	19	35786812	35786812	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:35786812T>C	uc002nyy.1	+	4	492	c.343T>C	c.(343-345)TAC>CAC	p.Y115H	MAG_uc002nyx.1_Missense_Mutation_p.Y115H|MAG_uc010eds.1_Missense_Mutation_p.Y90H|MAG_uc002nyz.1_Missense_Mutation_p.Y115H	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	115	Ig-like V-type.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GGGCGGGAAGTACTACTTCCG	0.652												
MAG	4099	broad.mit.edu	37	19	35800929	35800929	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:35800929T>C	uc002nyy.1	+	8	1533	c.1384T>C	c.(1384-1386)TAC>CAC	p.Y462H	MAG_uc002nyx.1_Missense_Mutation_p.Y462H|MAG_uc010eds.1_Missense_Mutation_p.Y437H|MAG_uc002nyz.1_Missense_Mutation_p.Y462H	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	462	Ig-like C2-type 4.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GGAGTTCGTGTACTCGGAGCG	0.677												
CD22	933	broad.mit.edu	37	19	35828763	35828763	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:35828763C>T	uc010edt.2	+	5	901	c.824C>T	c.(823-825)ACG>ATG	p.T275M	CD22_uc010xst.1_Missense_Mutation_p.T103M|CD22_uc010edu.2_Missense_Mutation_p.T275M|CD22_uc010edv.2_Missense_Mutation_p.T275M|CD22_uc002nzb.3_Intron|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	275	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	CCGGAGTACACGACGGTATCC	0.562												
GAPDHS	26330	broad.mit.edu	37	19	36024441	36024441	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36024441C>T	uc002oaf.1	+	1	128	c.12C>T	c.(10-12)CGC>CGT	p.R4R		NM_014364	NP_055179	O14556	G3PT_HUMAN	glyceraldehyde-3-phosphate dehydrogenase,	4					gluconeogenesis|glycolysis|positive regulation of glycolysis|sperm motility	cytosol	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity|NAD binding|protein binding				0	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		NADH(DB00157)	TGTCGAAGCGCGACATCGTCC	0.627												
ATP4A	495	broad.mit.edu	37	19	36047837	36047837	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36047837T>C	uc002oal.1	-	12	1876	c.1847A>G	c.(1846-1848)AAG>AGG	p.K616R	ATP4A_uc010eee.1_Intron	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	616	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	GGTGCGACACTTGAGCACAGC	0.577												
ATP4A	495	broad.mit.edu	37	19	36049992	36049992	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36049992C>T	uc002oal.1	-	8	1187	c.1158G>A	c.(1156-1158)TCG>TCA	p.S386S	ATP4A_uc010eee.1_5'Flank	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	386	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	CTGTCTTGTCCGAGCAGATCA	0.572												
ZBTB32	27033	broad.mit.edu	37	19	36207454	36207454	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36207454A>G	uc002oay.2	+	6	1474	c.1264A>G	c.(1264-1266)ACA>GCA	p.T422A	ZBTB32_uc002oaz.2_RNA|MLL4_uc010eei.2_5'Flank	NM_014383	NP_055198	Q9Y2Y4	ZBT32_HUMAN	zinc finger and BTB domain containing 32	422	C2H2-type 2.				DNA repair|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GCACCTGCGGACACACGGGGC	0.687											OREG0025433	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
PSENEN	55851	broad.mit.edu	37	19	36236883	36236883	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36236883T>C	uc002obi.1	+	2	256	c.52T>C	c.(52-54)TAC>CAC	p.Y18H	TMEM149_uc010eej.2_5'Flank|U2AF1L4_uc002obh.1_5'Flank|U2AF1L4_uc002obe.2_5'Flank|U2AF1L4_uc002obf.2_5'Flank|U2AF1L4_uc002obg.2_5'Flank|PSENEN_uc002obj.1_Missense_Mutation_p.Y18H|PSENEN_uc002obk.1_RNA|LIN37_uc002obm.2_5'Flank	NM_172341	NP_758844	Q9NZ42	PEN2_HUMAN	presenilin enhancer 2	18	Helical; (Potential).				amyloid precursor protein catabolic process|apoptosis|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to plasma membrane	aspartic-type endopeptidase activity|protein binding			ovary(2)	2	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GTGCCGGAAGTACTACCTGGG	0.398												
LIN37	55957	broad.mit.edu	37	19	36245365	36245365	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36245365A>G	uc002obm.2	+	10	845	c.731A>G	c.(730-732)GAA>GGA	p.E244G	uc002obl.2_5'Flank	NM_019104	NP_061977	Q96GY3	LIN37_HUMAN	lin-37 homolog	244							protein binding				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GAGATGTACGAACGACAGTGA	0.577												
NPHS1	4868	broad.mit.edu	37	19	36336323	36336323	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36336323T>C	uc002oby.2	-	14	1877	c.1877A>G	c.(1876-1878)CAC>CGC	p.H626R		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	626	Ig-like C2-type 6.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTCGGCGCTGTGGGCGCGGCA	0.647												
KIRREL2	84063	broad.mit.edu	37	19	36352822	36352822	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36352822T>C	uc002ocb.3	+	11	1618	c.1406T>C	c.(1405-1407)CTA>CCA	p.L469P	KIRREL2_uc002obz.3_Missense_Mutation_p.L469P|KIRREL2_uc002oca.3_Missense_Mutation_p.L419P|KIRREL2_uc002occ.3_Missense_Mutation_p.L416P|KIRREL2_uc002ocd.3_Missense_Mutation_p.L466P	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	469	Ig-like C2-type 5.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			ATCTCTGTGCTACACATTTCG	0.672												
KIRREL2	84063	broad.mit.edu	37	19	36357201	36357201	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36357201A>G	uc002ocb.3	+	15	2146	c.1934A>G	c.(1933-1935)CAC>CGC	p.H645R	KIRREL2_uc002obz.3_Intron|KIRREL2_uc002oca.3_Intron|KIRREL2_uc002occ.3_Missense_Mutation_p.H592R|KIRREL2_uc002ocd.3_Missense_Mutation_p.H607R|APLP1_uc010xsz.1_5'Flank|APLP1_uc002oce.2_5'Flank|APLP1_uc002ocf.2_5'Flank|APLP1_uc002ocg.2_5'Flank	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	645	Pro-rich.|Cytoplasmic (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TTCAACCCACACCTGGGCATG	0.622												
CLIP3	25999	broad.mit.edu	37	19	36517143	36517143	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36517143A>G	uc010eeq.1	-	5	869	c.587T>C	c.(586-588)TTC>TCC	p.F196S	uc002ocy.2_Intron|CLIP3_uc002ocz.1_Missense_Mutation_p.F196S	NM_015526	NP_056341	Q96DZ5	CLIP3_HUMAN	CAP-GLY domain containing linker protein 3	196					chaperone-mediated protein transport|fat cell differentiation|membrane biogenesis|negative regulation of microtubule polymerization|peptidyl-L-cysteine S-palmitoylation|positive regulation of apoptosis|positive regulation of endocytosis|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose transport|positive regulation of protein phosphorylation	early endosome membrane|Golgi stack|membrane raft|microsome|plasma membrane|recycling endosome membrane|trans-Golgi network membrane	ganglioside binding|microtubule binding			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GCCGTGGTTGAAGTCACTGCA	0.657												
WDR62	284403	broad.mit.edu	37	19	36595572	36595572	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36595572C>T	uc002odc.2	+	31	4382	c.4291C>T	c.(4291-4293)CGT>TGT	p.R1431C	WDR62_uc002odd.2_Missense_Mutation_p.R1436C	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	1431					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CGACCTTTACCGTGTGGTGAG	0.617												
ZNF565	147929	broad.mit.edu	37	19	36673869	36673869	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36673869T>C	uc002odn.2	-	5	1107	c.999A>G	c.(997-999)AAA>AAG	p.K333K	ZNF565_uc010ees.2_Silent_p.K268K|ZNF565_uc002odo.2_Silent_p.K333K	NM_152477	NP_689690	Q8N9K5	ZN565_HUMAN	zinc finger protein 565	333					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.206)			ACTCGTAGGGTTTCTCACCAG	0.483												
ZFP14	57677	broad.mit.edu	37	19	36831647	36831647	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36831647T>C	uc002odx.1	-	4	1174	c.1081A>G	c.(1081-1083)ATT>GTT	p.I361V	ZFP14_uc010xtd.1_Missense_Mutation_p.I362V|ZFP14_uc010eex.1_Missense_Mutation_p.I361V	NM_020917	NP_065968	Q9HCL3	ZFP14_HUMAN	zinc finger protein 14-like	361	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.162)					CCAGTATGAATACTCTGATGA	0.373												
ZNF529	57711	broad.mit.edu	37	19	37038880	37038880	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:37038880T>C	uc002oeh.3	-	5	782	c.580A>G	c.(580-582)ACT>GCT	p.T194A	ZNF529_uc010xth.1_Missense_Mutation_p.T194A|ZNF529_uc010xti.1_Missense_Mutation_p.T176A|ZNF529_uc002oeg.3_Missense_Mutation_p.T89A	NM_020951	NP_066002	Q6P280	ZN529_HUMAN	zinc finger protein 529 isoform a	161					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	Esophageal squamous(110;0.198)					TTTCCACCAGTATGTATTTTC	0.363												
ZNF345	25850	broad.mit.edu	37	19	37368485	37368485	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:37368485T>G	uc002oex.2	+	3	1131	c.753T>G	c.(751-753)ATT>ATG	p.I251M	ZNF345_uc002oey.3_Missense_Mutation_p.I251M|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	251	C2H2-type 7.				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATCAGAGAATTCATACCGGTG	0.428												
ZNF829	374899	broad.mit.edu	37	19	37382950	37382950	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:37382950G>A	uc002ofa.1	-	6	1105	c.743C>T	c.(742-744)GCC>GTC	p.A248V	ZNF345_uc002oez.2_Intron	NM_001037232	NP_001032309	Q3KNS6	ZN829_HUMAN	zinc finger protein 829	248	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATACTTAAAGGCTTTTCCACA	0.363												
ZNF420	147923	broad.mit.edu	37	19	37619822	37619822	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:37619822T>C	uc002ofl.2	+	5	2144	c.1929T>C	c.(1927-1929)TAT>TAC	p.Y643Y		NM_144689	NP_653290	Q8TAQ5	ZN420_HUMAN	zinc finger protein 420	643	C2H2-type 19.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGAAACCATATCAATGTAAGG	0.403												
ZNF527	84503	broad.mit.edu	37	19	37879579	37879579	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:37879579A>G	uc010efk.1	+	5	739	c.628A>G	c.(628-630)AAA>GAA	p.K210E	ZNF527_uc002ogf.3_Missense_Mutation_p.K178E|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	210					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AATTGAATATAAAAGACTCCA	0.333												
SIPA1L3	23094	broad.mit.edu	37	19	38579367	38579367	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:38579367C>T	uc002ohk.2	+	4	2050	c.1541C>T	c.(1540-1542)GCC>GTC	p.A514V		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	514					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			TTAGAACATGCCAATTACTTC	0.597												
KCNK6	9424	broad.mit.edu	37	19	38817452	38817452	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:38817452T>A	uc002oic.2	+	2	652	c.542T>A	c.(541-543)GTG>GAG	p.V181E	KCNK6_uc002oid.2_Missense_Mutation_p.V47E	NM_004823	NP_004814	Q9Y257	KCNK6_HUMAN	potassium channel, subfamily K, member 6	181	Helical; (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)	1	all_cancers(60;5.83e-07)		Lung(45;0.00047)|LUSC - Lung squamous cell carcinoma(53;0.000613)		Ibutilide(DB00308)|Quinidine(DB00908)	GGGGTCGTAGTGACCGTCTGC	0.627												
RYR1	6261	broad.mit.edu	37	19	38948199	38948199	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:38948199T>C	uc002oit.2	+	17	1984	c.1854T>C	c.(1852-1854)GAT>GAC	p.D618D	RYR1_uc002oiu.2_Silent_p.D618D	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	618	Cytoplasmic.|B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCAACCAAGATCTTATTACTG	0.517												
RYR1	6261	broad.mit.edu	37	19	38993522	38993522	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:38993522A>G	uc002oit.2	+	49	7968	c.7838A>G	c.(7837-7839)TAC>TGC	p.Y2613C	RYR1_uc002oiu.2_Missense_Mutation_p.Y2613C|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2613	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCCCGCAGGTACATCCGCCCG	0.468												
SIRT2	22933	broad.mit.edu	37	19	39380364	39380364	+	Missense_Mutation	SNP	C	C	T	rs150309258	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:39380364C>T	uc002ojt.1	-	7	597	c.397G>A	c.(397-399)GCC>ACC	p.A133T	SIRT2_uc010egh.1_Missense_Mutation_p.A96T|SIRT2_uc010egi.1_Missense_Mutation_p.A96T|SIRT2_uc002ojs.1_Missense_Mutation_p.A113T|SIRT2_uc002oju.1_Missense_Mutation_p.A96T|SIRT2_uc010egj.1_Missense_Mutation_p.A96T|SIRT2_uc002ojv.1_Missense_Mutation_p.A131T	NM_012237	NP_036369	Q8IXJ6	SIRT2_HUMAN	sirtuin 2 isoform 1	133	Deacetylase sirtuin-type.				cell division|chromatin silencing at rDNA|chromatin silencing at telomere|mitosis|negative regulation of striated muscle tissue development|protein ADP-ribosylation|regulation of exit from mitosis|regulation of phosphorylation|response to redox state	chromatin silencing complex|cytoplasm|microtubule	histone acetyltransferase binding|histone deacetylase binding|NAD+ binding|NAD-dependent histone deacetylase activity|transcription factor binding|tubulin deacetylase activity|ubiquitin binding|zinc ion binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00125)|LUSC - Lung squamous cell carcinoma(53;0.00191)			TTGGCGAGGGCGAAGAAGGGT	0.602												
SARS2	54938	broad.mit.edu	37	19	39412061	39412061	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:39412061C>T	uc002oka.2	-	5	720	c.560G>A	c.(559-561)CGA>CAA	p.R187Q	SARS2_uc002ojz.2_5'UTR|SARS2_uc010xup.1_Missense_Mutation_p.R189Q|SARS2_uc002okb.2_Missense_Mutation_p.R187Q|SARS2_uc010xuq.1_Missense_Mutation_p.R187Q|SARS2_uc010xur.1_RNA	NM_017827	NP_060297	Q9NP81	SYSM_HUMAN	seryl-tRNA synthetase 2 isoform b precursor	187					seryl-tRNA aminoacylation	mitochondrial matrix	ATP binding|protein binding|serine-tRNA ligase activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(60;2.74e-06)|all_epithelial(25;4.36e-06)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			GTGGAGCACTCGAGCCTGGCT	0.692												
PAPL	390928	broad.mit.edu	37	19	39589225	39589225	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:39589225C>T	uc002oki.2	+	3	523	c.249C>T	c.(247-249)GAC>GAT	p.D83D	PAPL_uc010egl.2_Silent_p.D83D	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	83						extracellular region	acid phosphatase activity|metal ion binding				0						CCTTTGTGGACGGGGGCATTC	0.652												
PAF1	54623	broad.mit.edu	37	19	39879431	39879431	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:39879431C>T	uc002old.2	-	9	886	c.711G>A	c.(709-711)GCG>GCA	p.A237A	PAF1_uc002ole.1_Silent_p.A227A|PAF1_uc010xuv.1_RNA|MED29_uc010xuw.1_5'Flank|MED29_uc002olf.2_5'Flank|MED29_uc010xux.1_5'Flank	NM_019088	NP_061961	Q8N7H5	PAF1_HUMAN	Paf1, RNA polymerase II associated factor,	237					histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			pancreas(1)	1	all_cancers(60;9.14e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.88e-06)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			TCATCTCCAACGCAGCTGCAC	0.547												
MAP3K10	4294	broad.mit.edu	37	19	40698259	40698259	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:40698259G>T	uc002ona.2	+	1	609	c.321G>T	c.(319-321)GGG>GGT	p.G107G		NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	107	Protein kinase.|ATP (By similarity).		G -> E (in a metastatic melanoma sample; somatic mutation).		activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity	p.G107E(1)		ovary(2)|lung(2)|skin(1)|pancreas(1)	6						TCGGTGTGGGGGGCTTTGGCA	0.701												
MAP3K10	4294	broad.mit.edu	37	19	40712065	40712065	+	Splice_Site	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:40712065G>A	uc002ona.2	+	5	1723	c.1435_splice	c.e5+1	p.G479_splice	MAP3K10_uc002onb.2_Intron	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase						activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						CTGCCCTCTGGTACCCACCCG	0.607												
MAP3K10	4294	broad.mit.edu	37	19	40721046	40721046	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:40721046C>T	uc002ona.2	+	10	3000	c.2712C>T	c.(2710-2712)TTC>TTT	p.F904F	MAP3K10_uc002onb.2_Silent_p.F293F	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	904					activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						TGGTCTCCTTCGGCCGGACAC	0.697												
SPTBN4	57731	broad.mit.edu	37	19	41003397	41003397	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:41003397C>T	uc002ony.2	+	7	756	c.670C>T	c.(670-672)CCT>TCT	p.P224S	SPTBN4_uc002onx.2_Missense_Mutation_p.P224S|SPTBN4_uc002onz.2_Missense_Mutation_p.P224S	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	224	Actin-binding.|CH 2.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CCTGCCCAGGCCTGATCTCGT	0.637												
SPTBN4	57731	broad.mit.edu	37	19	41009954	41009954	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:41009954G>A	uc002ony.2	+	12	1666	c.1580G>A	c.(1579-1581)CGG>CAG	p.R527Q	SPTBN4_uc002onx.2_Missense_Mutation_p.R527Q|SPTBN4_uc002onz.2_Missense_Mutation_p.R527Q	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	527	Spectrin 3.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GTGGGTGCCCGGCGGACACGA	0.647												
LTBP4	8425	broad.mit.edu	37	19	41125264	41125264	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:41125264G>A	uc002ooh.1	+	26	3284	c.3284G>A	c.(3283-3285)TGT>TAT	p.C1095Y	LTBP4_uc002oog.1_Missense_Mutation_p.C1058Y|LTBP4_uc002ooi.1_Missense_Mutation_p.C1028Y|LTBP4_uc002ooj.1_Translation_Start_Site|LTBP4_uc002ook.1_Missense_Mutation_p.C229Y|LTBP4_uc002ool.1_Missense_Mutation_p.C107Y|LTBP4_uc002oom.1_RNA|LTBP4_uc010xvp.1_Translation_Start_Site	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	1095	Cys-rich.				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GTGAACGAGTGTGAAACACTA	0.493												
LTBP4	8425	broad.mit.edu	37	19	41125313	41125313	+	Silent	SNP	A	A	G	rs35731433		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:41125313A>G	uc002ooh.1	+	26	3333	c.3333A>G	c.(3331-3333)GAA>GAG	p.E1111E	LTBP4_uc002oog.1_Silent_p.E1074E|LTBP4_uc002ooi.1_Silent_p.E1044E|LTBP4_uc002ooj.1_5'UTR|LTBP4_uc002ook.1_Silent_p.E245E|LTBP4_uc002ool.1_Silent_p.E123E|LTBP4_uc002oom.1_RNA|LTBP4_uc010xvp.1_5'UTR	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	1111	Cys-rich.				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AAAATGTCGAAGGCTCCTTCC	0.542												
LTBP4	8425	broad.mit.edu	37	19	41135314	41135314	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:41135314T>C	uc002ooh.1	+	34	4734	c.4734T>C	c.(4732-4734)TGT>TGC	p.C1578C	LTBP4_uc002oog.1_Silent_p.C1541C|LTBP4_uc002ooi.1_Silent_p.C1511C|LTBP4_uc002ooj.1_Silent_p.C451C|LTBP4_uc002ool.1_Silent_p.C590C|LTBP4_uc010xvp.1_Silent_p.C338C	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	1578	EGF-like 16.				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TCAACGAGTGTGATGAGGCCG	0.627												
CYP2A6	1548	broad.mit.edu	37	19	41354549	41354549	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:41354549A>G	uc002opl.3	-	3	484	c.463T>C	c.(463-465)TTC>CTC	p.F155L	CYP2A6_uc010ehe.1_5'UTR|CYP2A6_uc010ehf.1_RNA	NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	155					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	TCGATGAGGAAGCCCGCCTCC	0.706												
CYP2A7	1549	broad.mit.edu	37	19	41386114	41386114	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:41386114T>C	uc002opm.2	-	4	1071	c.529A>G	c.(529-531)ACA>GCA	p.T177A	CYP2A7_uc002opo.2_Missense_Mutation_p.T177A|CYP2A7_uc002opn.2_Missense_Mutation_p.T126A	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	177						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			TTGGAGACTGTGCGGCTCAGG	0.532												
AXL	558	broad.mit.edu	37	19	41744382	41744382	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:41744382G>T	uc010ehj.2	+	8	1192	c.1002G>T	c.(1000-1002)CTG>CTT	p.L334L	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Silent_p.L334L|AXL_uc010ehk.2_Silent_p.L334L	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	334	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						CAGTGCCCCTGGGCCCCCCTG	0.662												
CEACAM7	1087	broad.mit.edu	37	19	42191122	42191122	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42191122T>C	uc002ori.1	-	2	97	c.95A>G	c.(94-96)AAC>AGC	p.N32S	CEACAM7_uc010ehx.2_Missense_Mutation_p.N32S|CEACAM7_uc010ehy.1_Missense_Mutation_p.N32S	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	32						anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		CTGGGCACTGTTTGGCAGGTT	0.493												
CEACAM3	1084	broad.mit.edu	37	19	42301579	42301579	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42301579G>A	uc002orn.1	+	2	199	c.123G>A	c.(121-123)ATG>ATA	p.M41I	CEACAM3_uc010eia.1_Missense_Mutation_p.M41I|CEACAM3_uc002oro.1_RNA	NM_001815	NP_001806	P40198	CEAM3_HUMAN	carcinoembryonic antigen-related cell adhesion	41	Ig-like V-type.|Extracellular (Potential).					integral to membrane				skin(1)	1						TTGAATCCATGCCGCTCAGTG	0.512												
CD79A	973	broad.mit.edu	37	19	42383168	42383168	+	Missense_Mutation	SNP	A	A	G	rs151224661	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42383168A>G	uc002orv.2	+	2	373	c.188A>G	c.(187-189)AAC>AGC	p.N63S	CD79A_uc002oru.2_Missense_Mutation_p.N63S	NM_001783	NP_001774	P11912	CD79A_HUMAN	CD79A antigen isoform 1 precursor	63	Ig-like C2-type.|Extracellular (Potential).				B cell differentiation|B cell proliferation|B cell receptor signaling pathway	B cell receptor complex|external side of plasma membrane|integral to membrane|membrane raft|multivesicular body	transmembrane receptor activity			ovary(2)|pancreas(1)	3						AACAACGCCAACGTCACCTGG	0.607			O|S		DLBCL							
RABAC1	10567	broad.mit.edu	37	19	42463428	42463428	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42463428T>C	uc002osf.2	-	1	101	c.17A>G	c.(16-18)GAC>GGC	p.D6G		NM_006423	NP_006414	Q9UI14	PRAF1_HUMAN	Rab acceptor 1	6	Cytoplasmic (By similarity).					cell junction|Golgi apparatus|integral to membrane|synaptic vesicle	identical protein binding				0						TTTCTGCTGGTCCTTCTGCGC	0.582												
ATP1A3	478	broad.mit.edu	37	19	42474390	42474390	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42474390C>T	uc002osg.2	-	18	2643	c.2489G>A	c.(2488-2490)CGG>CAG	p.R830Q	ATP1A3_uc010xwf.1_Missense_Mutation_p.R841Q|ATP1A3_uc010xwg.1_Missense_Mutation_p.R800Q|ATP1A3_uc010xwh.1_Missense_Mutation_p.R843Q|ATP1A3_uc002osh.2_Missense_Mutation_p.R830Q	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	830	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						TTTGTCCGTCCGCGGGTTCCT	0.617												
ATP1A3	478	broad.mit.edu	37	19	42480695	42480695	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42480695T>C	uc002osg.2	-	15	2121	c.1967A>G	c.(1966-1968)CAC>CGC	p.H656R	ATP1A3_uc010xwf.1_Missense_Mutation_p.H667R|ATP1A3_uc010xwg.1_Missense_Mutation_p.H626R|ATP1A3_uc010xwh.1_Missense_Mutation_p.H669R|ATP1A3_uc002osh.2_Missense_Mutation_p.H656R	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	656	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						GTCGGTGCCGTGGATCACGCA	0.582												
GRIK5	2901	broad.mit.edu	37	19	42507556	42507556	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42507556G>A	uc002osj.1	-	18	2477	c.2442C>T	c.(2440-2442)GGC>GGT	p.G814G	GRIK5_uc002osi.1_Silent_p.G386G	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	814	Helical; (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	CAATGATGAGGCCACAGATGA	0.582												
ZNF574	64763	broad.mit.edu	37	19	42583295	42583295	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42583295G>A	uc002osm.3	+	2	706	c.537G>A	c.(535-537)GTG>GTA	p.V179V	ZNF574_uc002osk.3_Silent_p.V269V	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	179					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				GAGTGGCTGTGGAGCACTCAT	0.652												
ZNF526	116115	broad.mit.edu	37	19	42729973	42729973	+	Missense_Mutation	SNP	G	G	A	rs149858475		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42729973G>A	uc002osz.1	+	3	1574	c.1418G>A	c.(1417-1419)CGC>CAC	p.R473H		NM_133444	NP_597701	Q8TF50	ZN526_HUMAN	zinc finger protein 526	473	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0704)				CGGCGTCACCGCTGTGGGGTT	0.657												
ERF	2077	broad.mit.edu	37	19	42753338	42753338	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42753338T>C	uc002ote.3	-	4	1084	c.926A>G	c.(925-927)GAC>GGC	p.D309G	ERF_uc002otd.3_Missense_Mutation_p.D40G	NM_006494	NP_006485	P50548	ERF_HUMAN	Ets2 repressor factor	309					cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			lung(1)|kidney(1)|central_nervous_system(1)|skin(1)	4		Prostate(69;0.00682)				CCGTTTCATGTCCTCAGGGCT	0.677												
CIC	23152	broad.mit.edu	37	19	42791321	42791321	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42791321G>A	uc002otf.1	+	3	421	c.381G>A	c.(379-381)ACG>ACA	p.T127T		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	127	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				CTCCCACCACGGAGGAGGAGG	0.677			T	DUX4	soft tissue sarcoma							
CIC	23152	broad.mit.edu	37	19	42795161	42795161	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42795161A>G	uc002otf.1	+	10	2281	c.2241A>G	c.(2239-2241)GGA>GGG	p.G747G		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	747	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				TGGTGGCTGGACCCCTGCTGG	0.667			T	DUX4	soft tissue sarcoma							
LIPE	3991	broad.mit.edu	37	19	42911584	42911584	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:42911584C>T	uc002otr.2	-	6	2156	c.1879G>A	c.(1879-1881)GGC>AGC	p.G627S	uc010eif.1_Intron	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	627					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				CTCCGTTGGCCGTTGGACTTT	0.672												
CEACAM1	634	broad.mit.edu	37	19	43023277	43023277	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:43023277T>G	uc002otv.2	-	5	1182	c.1069A>C	c.(1069-1071)ATC>CTC	p.I357L	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc010eii.2_Intron|CEACAM1_uc002otw.2_Missense_Mutation_p.I357L|CEACAM1_uc010eij.2_Missense_Mutation_p.I357L|CEACAM1_uc002otx.2_Intron|CEACAM1_uc002oty.2_Intron|CEACAM1_uc002otz.2_Intron|CEACAM1_uc010eik.2_Intron|CEACAM1_uc002oua.2_Missense_Mutation_p.I357L|CEACAM1_uc002oub.2_Intron	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	357	Ig-like C2-type 3.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	AACCAACGGATGGAGATTCCA	0.517												
LYPD5	284348	broad.mit.edu	37	19	44301943	44301943	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:44301943G>A	uc002oxm.3	-	5	637	c.556C>T	c.(556-558)CGG>TGG	p.R186W	LYPD5_uc002oxn.3_Missense_Mutation_p.R143W	NM_001031749	NP_001026919	Q6UWN5	LYPD5_HUMAN	LY6/PLAUR domain containing 5 isoform A	186	UPAR/Ly6.					anchored to membrane|plasma membrane					0		Prostate(69;0.0352)				CAGGAGGGCCGGTGGCAGGTT	0.602												
ZNF45	7596	broad.mit.edu	37	19	44418119	44418119	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:44418119T>C	uc002oxu.1	-	4	1568	c.1469A>G	c.(1468-1470)CAC>CGC	p.H490R	ZNF45_uc002oxw.1_Missense_Mutation_p.H490R|ZNF45_uc002oxv.1_Missense_Mutation_p.H490R	NM_003425	NP_003416	Q02386	ZNF45_HUMAN	zinc finger protein 45	490	C2H2-type 12.				multicellular organismal development	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GATTCTACAGTGTACATTAAG	0.483												
ZNF230	7773	broad.mit.edu	37	19	44514742	44514742	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:44514742G>A	uc002oyb.1	+	5	802	c.551G>A	c.(550-552)CGT>CAT	p.R184H		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	184	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				TCAGCTCTTCGTATTCACCAG	0.453												
ZNF225	7768	broad.mit.edu	37	19	44635769	44635769	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:44635769T>C	uc002oyj.1	+	5	1245	c.1002T>C	c.(1000-1002)CAT>CAC	p.H334H	ZNF225_uc010eje.1_Silent_p.H251H|ZNF225_uc010ejf.1_Silent_p.H334H	NM_013362	NP_037494	Q9UK10	ZN225_HUMAN	zinc finger protein 225	334	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				TTAATAGTCATCGCATGGTCC	0.408												
ZNF180	7733	broad.mit.edu	37	19	44980768	44980768	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:44980768A>G	uc002ozf.3	-	5	2212	c.1930T>C	c.(1930-1932)TTG>CTG	p.L644L	ZNF180_uc002ozh.3_Silent_p.L301L|ZNF180_uc002ozi.3_Silent_p.L617L|ZNF180_uc002ozg.3_Silent_p.L643L|ZNF180_uc010ejm.2_Silent_p.L619L	NM_013256	NP_037388	Q9UJW8	ZN180_HUMAN	zinc finger protein 180	644	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				CGAGCACTCAAGCTAAATGTT	0.373												
BCL3	602	broad.mit.edu	37	19	45254502	45254502	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:45254502A>G	uc010xxe.1	+	2	345	c.275A>G	c.(274-276)TAC>TGC	p.Y92C		NM_005178	NP_005169	P20749	BCL3_HUMAN	B-cell CLL/lymphoma 3	92	Pro-rich.				DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|I-kappaB kinase/NF-kappaB cascade|maintenance of protein location in nucleus|negative regulation of apoptosis|negative regulation of interleukin-8 biosynthetic process|negative regulation of transcription, DNA-dependent|positive regulation of translation|protein import into nucleus, translocation|regulation of DNA binding|regulation of NF-kappaB import into nucleus|response to UV-C|response to virus	Bcl3-Bcl10 complex|Bcl3/NF-kappaB2 complex|nucleus|perinuclear region of cytoplasm	protein binding, bridging|transcription factor binding			ovary(1)|lung(1)	2	Lung NSC(12;0.000698)|all_lung(12;0.002)	Ovarian(192;0.0728)				CTGCCTTTGTACCCCACTCGG	0.582			T	IGH@	CLL 							
BCAM	4059	broad.mit.edu	37	19	45315633	45315633	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:45315633C>T	uc002ozu.2	+	3	462	c.418C>T	c.(418-420)CGG>TGG	p.R140W	BCAM_uc002ozt.1_Missense_Mutation_p.R140W	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	140	Extracellular (Potential).|Ig-like V-type 1.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				GGCCACTGCGCGGCTCAACGT	0.682												
ERCC2	2068	broad.mit.edu	37	19	45867349	45867349	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:45867349G>A	uc002pbj.2	-	10	891	c.844C>T	c.(844-846)CGG>TGG	p.R282W	ERCC2_uc002pbi.2_5'Flank|ERCC2_uc010ejz.2_Missense_Mutation_p.R204W|ERCC2_uc002pbk.2_Missense_Mutation_p.R258W|ERCC2_uc002pbl.3_Missense_Mutation_p.R258W|ERCC2_uc010xxj.1_RNA	NM_000400	NP_000391	P18074	ERCC2_HUMAN	excision repair cross-complementing rodent	282	Helicase ATP-binding.				cell cycle checkpoint|chromosome segregation|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein phosphorylation|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|UV protection|viral reproduction	cytoplasm|holo TFIIH complex|MMXD complex	5'-3' DNA helicase activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding|protein C-terminus binding|protein N-terminus binding			lung(2)|pancreas(1)	3		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0226)		TACTCGTCCCGCAGGCGCTGC	0.706			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum			
CD3EAP	10849	broad.mit.edu	37	19	45911617	45911617	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:45911617C>T	uc002pbq.1	+	3	879	c.391C>T	c.(391-393)CAG>TAG	p.Q131*	PPP1R13L_uc002pbo.2_5'Flank|PPP1R13L_uc002pbp.2_5'Flank|CD3EAP_uc002pbr.1_Nonsense_Mutation_p.Q133*	NM_012099	NP_036231	O15446	RPA34_HUMAN	CD3E antigen, epsilon polypeptide associated	131					rRNA transcription|transmembrane receptor protein tyrosine kinase signaling pathway	chromosome|RNA polymerase I transcription factor complex	DNA-directed RNA polymerase activity			large_intestine(2)|ovary(2)	4		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0251)		GAGCCCTCTGCAGCCCATCCC	0.652												
RTN2	6253	broad.mit.edu	37	19	45997462	45997462	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:45997462G>A	uc002pcb.2	-	4	1004	c.776C>T	c.(775-777)ACG>ATG	p.T259M	RTN2_uc002pcc.2_Missense_Mutation_p.T259M|RTN2_uc002pcd.2_RNA	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	259						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		TAATTGGTCCGTGCTATCGAG	0.537												
SYMPK	8189	broad.mit.edu	37	19	46357726	46357726	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:46357726T>C	uc002pdn.2	-	2	273	c.28A>G	c.(28-30)ACC>GCC	p.T10A	SYMPK_uc002pdo.1_Missense_Mutation_p.T10A|SYMPK_uc002pdp.1_Missense_Mutation_p.T10A|SYMPK_uc002pdq.1_Missense_Mutation_p.T10A	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	10	Interaction with HSF1.				cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		CTCCGACGGGTGACGCTGTCT	0.622												
CCDC8	83987	broad.mit.edu	37	19	46914891	46914891	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:46914891C>T	uc002pep.2	-	1	2029	c.1177G>A	c.(1177-1179)GCG>ACG	p.A393T		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	393						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		GGGGCCTCCGCCCTCTGATTA	0.587												
AP2S1	1175	broad.mit.edu	37	19	47342048	47342048	+	Silent	SNP	G	G	A	rs143384246		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:47342048G>A	uc002pft.1	-	4	456	c.276C>T	c.(274-276)AAC>AAT	p.N92N	AP2S1_uc002pfu.1_Silent_p.N54N	NM_004069	NP_004060	P53680	AP2S1_HUMAN	adaptor-related protein complex 2, sigma 1	92					axon guidance|clathrin coat assembly|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|regulation of endocytosis|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	protein transporter activity				0		all_cancers(25;1.24e-06)|all_epithelial(76;1.09e-05)|all_lung(116;0.00019)|Lung NSC(112;0.000601)|Ovarian(192;0.0221)|all_neural(266;0.0459)|Breast(70;0.128)		OV - Ovarian serous cystadenocarcinoma(262;3.86e-05)|all cancers(93;0.000107)|Epithelial(262;0.00325)|GBM - Glioblastoma multiforme(486;0.0336)		GGAAATATTCGTTTAAGACCT	0.443												
GRLF1	2909	broad.mit.edu	37	19	47424757	47424757	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:47424757T>C	uc010ekv.2	+	1	2825	c.2825T>C	c.(2824-2826)GTG>GCG	p.V942A		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	942					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		AAAGATGTGGTGGAAAAAAAG	0.468												
KPTN	11133	broad.mit.edu	37	19	47987271	47987271	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:47987271C>T	uc002pgy.2	-	1	251	c.147G>A	c.(145-147)AAG>AAA	p.K49K	KPTN_uc010xys.1_RNA|uc002pgz.1_5'Flank	NM_007059	NP_008990	Q9Y664	KPTN_HUMAN	kaptin (actin binding protein)	49					actin filament organization|cellular component movement|sensory perception of sound	actin cytoskeleton|growth cone|microtubule organizing center|nucleus|perinuclear region of cytoplasm|stereocilium	actin binding			ovary(1)	1		all_cancers(25;1.55e-10)|all_epithelial(76;3.4e-08)|all_lung(116;1.73e-07)|Lung NSC(112;3.95e-07)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		OV - Ovarian serous cystadenocarcinoma(262;0.000428)|all cancers(93;0.000631)|Epithelial(262;0.0153)|GBM - Glioblastoma multiforme(486;0.0694)		AGCCGAGCACCTTGCCTTTAA	0.537											OREG0025593	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
LIG1	3978	broad.mit.edu	37	19	48631219	48631219	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:48631219C>T	uc002pia.1	-	20	2000	c.1880G>A	c.(1879-1881)CGG>CAG	p.R627Q	LIG1_uc010xze.1_Missense_Mutation_p.R320Q|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Missense_Mutation_p.R559Q|LIG1_uc010xzg.1_Missense_Mutation_p.R596Q	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	627					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	CTTCTTTTCCCGGTCCCAAGC	0.572								NER				
FAM83E	54854	broad.mit.edu	37	19	49113254	49113254	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:49113254C>T	uc002pjn.2	-	3	702	c.637G>A	c.(637-639)GTG>ATG	p.V213M		NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	213										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		CGGACATCCACGTTCTGTTGG	0.637												
RPL18	6141	broad.mit.edu	37	19	49119424	49119424	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:49119424G>A	uc002pjq.1	-	5	366	c.333C>T	c.(331-333)AGC>AGT	p.S111S	FAM83E_uc002pjn.2_5'Flank|RPL18_uc002pjp.1_Silent_p.S59S|RPL18_uc010xzs.1_3'UTR	NM_000979	NP_000970	Q07020	RL18_HUMAN	ribosomal protein L18	111					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.89e-05)|all cancers(93;0.00011)|GBM - Glioblastoma multiforme(486;0.0061)|Epithelial(262;0.0154)		TGAGGATGCGGCTGCGGGCCC	0.667												
TRPM4	54795	broad.mit.edu	37	19	49671550	49671550	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:49671550G>A	uc002pmw.2	+	5	554	c.482G>A	c.(481-483)GGC>GAC	p.G161D	TRPM4_uc010emu.2_Missense_Mutation_p.G161D|TRPM4_uc010yak.1_5'UTR|TRPM4_uc002pmx.2_5'UTR|TRPM4_uc010emv.2_Intron|TRPM4_uc010yal.1_Intron	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	161	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CTGCACACGGGCATCGGCCGG	0.612												
TEAD2	8463	broad.mit.edu	37	19	49850573	49850573	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:49850573G>A	uc002pnj.2	-	9	874	c.783C>T	c.(781-783)CCC>CCT	p.P261P	TEAD2_uc002png.2_Silent_p.P264P|TEAD2_uc002pnh.2_Silent_p.P265P|TEAD2_uc002pni.2_Silent_p.P264P|TEAD2_uc010yao.1_Silent_p.P133P|TEAD2_uc010emw.2_Silent_p.P264P	NM_003598	NP_003589	Q15562	TEAD2_HUMAN	TEA domain family member 2	261	Transcriptional activation (Potential).				hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3		all_lung(116;7.65e-05)|Lung NSC(112;0.000132)|all_neural(266;0.0506)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00093)|GBM - Glioblastoma multiforme(486;0.0467)		GCGGCGCTCCGGGGCTGGGGC	0.632												
DKKL1	27120	broad.mit.edu	37	19	49868877	49868877	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:49868877A>G	uc002pnk.2	+	3	509	c.295A>G	c.(295-297)ACC>GCC	p.T99A		NM_014419	NP_055234	Q9UK85	DKKL1_HUMAN	dickkopf-like 1 precursor	99					anatomical structure morphogenesis	extracellular space	protein binding|signal transducer activity				0		all_lung(116;1.66e-06)|Lung NSC(112;5.89e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0456)		GGGGAACAACACCCTCTCCAG	0.607												
SLC17A7	57030	broad.mit.edu	37	19	49934038	49934038	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:49934038A>G	uc002pnp.2	-	12	1593	c.1421T>C	c.(1420-1422)ATT>ACT	p.I474T	SLC17A7_uc002pno.2_Missense_Mutation_p.I136T	NM_020309	NP_064705	Q9P2U7	VGLU1_HUMAN	solute carrier family 17, member 7	474	Helical; (Potential).				glutamate secretion|neurotransmitter secretion	cell junction|clathrin sculpted glutamate transport vesicle membrane|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|sodium-dependent phosphate transmembrane transporter activity|sodium:inorganic phosphate symporter activity			ovary(1)|pancreas(1)|skin(1)	3		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(486;0.0245)		CAGGGAGGCAATTAGGAACAC	0.582												
ALDH16A1	126133	broad.mit.edu	37	19	49973652	49973652	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:49973652C>T	uc002pnt.2	+	17	2453	c.2337C>T	c.(2335-2337)GCC>GCT	p.A779A	ALDH16A1_uc010yar.1_Silent_p.A728A|ALDH16A1_uc010yas.1_Silent_p.A614A|ALDH16A1_uc010yat.1_Silent_p.A616A	NM_153329	NP_699160	Q8IZ83	A16A1_HUMAN	aldehyde dehydrogenase 16 family, member A1	779							oxidoreductase activity|protein binding			skin(1)	1		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)		ACCAGGAGGCCGAGGGGGCAG	0.692												
MED25	81857	broad.mit.edu	37	19	50333092	50333092	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:50333092G>A	uc002ppw.1	+	6	628	c.575G>A	c.(574-576)CGG>CAG	p.R192Q	MED25_uc010ybe.1_Intron|MED25_uc002ppx.1_5'UTR	NM_030973	NP_112235	Q71SY5	MED25_HUMAN	mediator complex subunit 25	192	Interaction with the Mediator complex.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm				ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00822)|GBM - Glioblastoma multiforme(134;0.0122)		CCTGCGCTTCGGCTTCTGTTT	0.647												
ZNF473	25888	broad.mit.edu	37	19	50550263	50550263	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:50550263T>C	uc002prn.2	+	5	2800	c.2563T>C	c.(2563-2565)TCG>CCG	p.S855P	ZNF473_uc002prm.2_Missense_Mutation_p.S855P|ZNF473_uc010ybo.1_Missense_Mutation_p.S843P	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	855	C2H2-type 20.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		TCGGTGCCACTCGAGCCTCAG	0.532											OREG0025632	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
MYH14	79784	broad.mit.edu	37	19	50764738	50764738	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:50764738G>A	uc002prr.1	+	19	2355	c.2308G>A	c.(2308-2310)GCG>ACG	p.A770T	MYH14_uc010enu.1_Missense_Mutation_p.A811T|MYH14_uc002prq.1_Missense_Mutation_p.A778T	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	770	Myosin head-like.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		ACAGATCCAGGCGCTGGAACT	0.468												
KCNC3	3748	broad.mit.edu	37	19	50826917	50826917	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:50826917G>A	uc002pru.1	-	2	1588	c.1293C>T	c.(1291-1293)TTC>TTT	p.F431F	KCNC3_uc002prt.1_Silent_p.F67F	NM_004977	NP_004968	Q14003	KCNC3_HUMAN	Shaw-related voltage-gated potassium channel	431	Helical; Voltage-sensor; Name=Segment S4; (Potential).				cell death	voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1		all_neural(266;0.057)|Ovarian(192;0.208)		OV - Ovarian serous cystadenocarcinoma(262;0.00283)|GBM - Glioblastoma multiforme(134;0.0181)		GCAGCCCCACGAAGTGCCGGG	0.657												
NAPSA	9476	broad.mit.edu	37	19	50868804	50868804	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:50868804T>C	uc002prx.2	-	1	128	c.75A>G	c.(73-75)ACA>ACG	p.T25T	NR1H2_uc002prv.3_Intron	NM_004851	NP_004842	O96009	NAPSA_HUMAN	napsin A preproprotein	25					proteolysis	extracellular region	aspartic-type endopeptidase activity				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00743)|GBM - Glioblastoma multiforme(134;0.0183)		ACCGGATCAGTGTGGCCCCGG	0.453												
POLD1	5424	broad.mit.edu	37	19	50905562	50905562	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:50905562C>T	uc002psb.3	+	6	746	c.690C>T	c.(688-690)GGC>GGT	p.G230G	POLD1_uc002psc.3_Silent_p.G230G|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Silent_p.G230G	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	230					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		TGGAACAGGGCATCCGTGTGG	0.697								DNA_polymerases_(catalytic_subunits)				
POLD1	5424	broad.mit.edu	37	19	50921195	50921195	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:50921195G>T	uc002psb.3	+	27	3371	c.3315G>T	c.(3313-3315)GAG>GAT	p.E1105D	POLD1_uc002psc.3_Missense_Mutation_p.E1105D|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Missense_Mutation_p.E1131D|SPIB_uc002psd.2_5'Flank|SPIB_uc002pse.2_5'Flank|SPIB_uc010ycc.1_5'Flank	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	1105					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		CTGGACCTGAGGCCTGGTGAC	0.602								DNA_polymerases_(catalytic_subunits)				
FAM71E1	112703	broad.mit.edu	37	19	50979589	50979589	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:50979589T>C	uc002psh.2	-	1	415	c.57A>G	c.(55-57)TCA>TCG	p.S19S	FAM71E1_uc002psg.2_Silent_p.S19S|FAM71E1_uc002psi.2_RNA|C19orf63_uc002psj.2_5'Flank|C19orf63_uc002psk.2_5'Flank|C19orf63_uc002psl.2_5'Flank	NM_138411	NP_612420	Q6IPT2	F71E1_HUMAN	hypothetical protein LOC112703	19										breast(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.0077)|GBM - Glioblastoma multiforme(134;0.026)		TCCTGATTTGTGATGACGTCC	0.657												
LRRC4B	94030	broad.mit.edu	37	19	51021967	51021967	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:51021967T>C	uc002pss.2	-	3	1140	c.1003A>G	c.(1003-1005)ACG>GCG	p.T335A		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	335	LRRCT.|Extracellular (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		GCGCAGCACGTCGTGTTGCTG	0.657												
IGLON5	402665	broad.mit.edu	37	19	51825371	51825371	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:51825371T>C	uc002pwc.2	+	2	133	c.133T>C	c.(133-135)TGT>CGT	p.C45R		NM_001101372	NP_001094842	A6NGN9	IGLO5_HUMAN	IgLON family member 5 precursor	45	Ig-like C2-type 1.					extracellular region					0						CTACACAGTGTGTGAAGGTGA	0.632												
SIGLEC8	27181	broad.mit.edu	37	19	51955734	51955734	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:51955734C>G	uc002pwt.2	-	7	1466	c.1399G>C	c.(1399-1401)GAC>CAC	p.D467H	SIGLEC8_uc010yda.1_Missense_Mutation_p.D358H|SIGLEC8_uc002pwu.2_Intron|SIGLEC8_uc010eox.2_Missense_Mutation_p.D374H	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	467	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TATTCACTGTCAGTGGCCTCC	0.547												
SIGLEC8	27181	broad.mit.edu	37	19	51955829	51955829	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:51955829A>G	uc002pwt.2	-	7	1371	c.1304T>C	c.(1303-1305)GTT>GCT	p.V435A	SIGLEC8_uc010yda.1_Missense_Mutation_p.V326A|SIGLEC8_uc002pwu.2_Intron|SIGLEC8_uc010eox.2_Missense_Mutation_p.V342A	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	435	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		CGAGGGGGCAACAGCTGGGGG	0.587												
SIGLEC12	89858	broad.mit.edu	37	19	52002707	52002707	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:52002707G>A	uc002pwx.1	-	3	1128	c.1072C>T	c.(1072-1074)CGA>TGA	p.R358*	SIGLEC12_uc002pww.1_Nonsense_Mutation_p.R240*|SIGLEC12_uc010eoy.1_Nonsense_Mutation_p.R85*	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	358	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		ATGTTGAGTCGGACAGCCCTG	0.607												
FPR2	2358	broad.mit.edu	37	19	52272320	52272320	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:52272320C>T	uc002pxr.2	+	2	454	c.409C>T	c.(409-411)CGC>TGC	p.R137C	FPR2_uc002pxs.3_Missense_Mutation_p.R137C|FPR2_uc010epf.2_Missense_Mutation_p.R137C	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	137	Cytoplasmic (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						CCAGAACCACCGCACTGTGAG	0.498												
ZNF649	65251	broad.mit.edu	37	19	52394084	52394084	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:52394084A>G	uc002pxy.2	-	5	1573	c.1305T>C	c.(1303-1305)TGT>TGC	p.C435C	ZNF577_uc010ydd.1_5'Flank|ZNF577_uc002pxx.3_5'Flank|ZNF577_uc002pxv.2_5'Flank|ZNF577_uc002pxw.2_5'Flank|ZNF577_uc010yde.1_5'Flank|ZNF577_uc010ydf.1_Intron	NM_023074	NP_075562	Q9BS31	ZN649_HUMAN	zinc finger protein 649	435	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00152)|OV - Ovarian serous cystadenocarcinoma(262;0.0185)		AAGCTTTCTCACACTCATCAC	0.438												
ZNF614	80110	broad.mit.edu	37	19	52519395	52519395	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:52519395T>C	uc002pyj.2	-	5	1858	c.1456A>G	c.(1456-1458)ACC>GCC	p.T486A	ZNF614_uc002pyi.3_Intron|ZNF614_uc010epj.2_Missense_Mutation_p.T189A	NM_025040	NP_079316	Q8N883	ZN614_HUMAN	zinc finger protein 614	486	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	5		all_neural(266;0.0505)		GBM - Glioblastoma multiforme(134;0.00513)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		CCGCACTCGGTACATACAAAG	0.408												
ZNF480	147657	broad.mit.edu	37	19	52817449	52817449	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:52817449C>T	uc010ydl.1	+	3	186	c.116C>T	c.(115-117)GCG>GTG	p.A39V	ZNF480_uc002pyv.2_Intron|ZNF480_uc010ydm.1_Missense_Mutation_p.A39V|ZNF480_uc010epn.2_Intron|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	39	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		TTCTCTCAGGCGGAGTGGAAA	0.473												
ZNF480	147657	broad.mit.edu	37	19	52825579	52825579	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:52825579T>C	uc010ydl.1	+	5	1146	c.1076T>C	c.(1075-1077)GTA>GCA	p.V359A	ZNF480_uc002pyv.2_Missense_Mutation_p.V282A|ZNF480_uc010ydm.1_Missense_Mutation_p.V316A|ZNF480_uc010epn.2_Missense_Mutation_p.V190A|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	359	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		GCGCTCCTTGTACGACATCAG	0.378												
ZNF528	84436	broad.mit.edu	37	19	52918502	52918502	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:52918502A>G	uc002pzh.2	+	7	823	c.397A>G	c.(397-399)AAG>GAG	p.K133E	ZNF528_uc002pzi.2_5'UTR	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	133					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		TTCTGGGTGTAAGCATTTTGA	0.348												
ZNF611	81856	broad.mit.edu	37	19	53208359	53208359	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:53208359T>C	uc002pzz.2	-	7	2266	c.1949A>G	c.(1948-1950)TAC>TGC	p.Y650C	ZNF611_uc010eqc.2_Missense_Mutation_p.Y580C|ZNF611_uc010ydo.1_Missense_Mutation_p.Y580C|ZNF611_uc010ydr.1_Missense_Mutation_p.Y581C|ZNF611_uc010ydp.1_Missense_Mutation_p.Y650C|ZNF611_uc010ydq.1_Missense_Mutation_p.Y650C|ZNF611_uc002qaa.3_Missense_Mutation_p.Y580C	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	650	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)		TGTACATTTGTAAGATTTCTC	0.403												
ZNF160	90338	broad.mit.edu	37	19	53572886	53572886	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:53572886T>C	uc010eqk.2	-	7	1317	c.901A>G	c.(901-903)ACT>GCT	p.T301A	ZNF160_uc002qaq.3_Missense_Mutation_p.T301A|ZNF160_uc002qar.3_Missense_Mutation_p.T301A	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	301	C2H2-type 2.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		TGATGAATAGTTAGATTTGAA	0.413												
ZNF415	55786	broad.mit.edu	37	19	53612426	53612426	+	Missense_Mutation	SNP	C	C	T	rs138480197	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:53612426C>T	uc002qax.2	-	7	1365	c.1016G>A	c.(1015-1017)CGG>CAG	p.R339Q	ZNF415_uc002qat.2_Missense_Mutation_p.R303Q|ZNF415_uc002qaw.2_Missense_Mutation_p.R291Q|ZNF415_uc010yds.1_Missense_Mutation_p.R291Q|ZNF415_uc010ydt.1_Missense_Mutation_p.R291Q|ZNF415_uc002qau.2_Missense_Mutation_p.R278Q|ZNF415_uc002qav.2_Missense_Mutation_p.R303Q|ZNF415_uc002qba.2_Missense_Mutation_p.R61Q|ZNF415_uc002qay.2_Missense_Mutation_p.R278Q|ZNF415_uc002qaz.2_Missense_Mutation_p.R339Q	NR_028343		Q09FC8	ZN415_HUMAN	RecName: Full=Zinc finger protein 415;	339	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.0191)		GTGAACTCTCCGATGTAGTGC	0.418												
ZNF347	84671	broad.mit.edu	37	19	53643691	53643691	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:53643691T>C	uc002qbb.1	-	5	2459	c.2390A>G	c.(2389-2391)AAA>AGA	p.K797R	ZNF347_uc010eql.1_Missense_Mutation_p.K798R|ZNF347_uc002qbc.1_Missense_Mutation_p.K798R	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	797	C2H2-type 20; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		ACTAAAGGGTTTCCCACACTC	0.413												
ZNF677	342926	broad.mit.edu	37	19	53741578	53741578	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:53741578T>C	uc002qbf.1	-	5	587	c.402A>G	c.(400-402)CAA>CAG	p.Q134Q	ZNF677_uc002qbg.1_Silent_p.Q134Q	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	134					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		TATTATGTTGTTGATCTTTTC	0.338												
VN1R2	317701	broad.mit.edu	37	19	53762245	53762245	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:53762245C>A	uc002qbi.2	+	1	701	c.617C>A	c.(616-618)CCG>CAG	p.P206Q		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	206	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		GTAAAAGCCCCGACATACATT	0.483												
VN1R4	317703	broad.mit.edu	37	19	53770041	53770041	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:53770041T>C	uc010ydu.1	-	1	878	c.878A>G	c.(877-879)TAC>TGC	p.Y293C		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	293	Cytoplasmic (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		ACAAAACCTGTATACACTGGG	0.393										HNSCC(26;0.072)		
ZNF761	388561	broad.mit.edu	37	19	53958506	53958506	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:53958506A>G	uc010eqp.2	+	7	1203	c.745A>G	c.(745-747)AAG>GAG	p.K249E	ZNF761_uc010ydy.1_Missense_Mutation_p.K195E|ZNF761_uc002qbt.1_Missense_Mutation_p.K195E	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	249	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		TGTATGTGGCAAGCTCTTTAA	0.403												
MYADM	91663	broad.mit.edu	37	19	54377168	54377168	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:54377168T>C	uc002qcl.2	+	3	533	c.385T>C	c.(385-387)TCC>CCC	p.S129P	MYADM_uc002qcm.2_Missense_Mutation_p.S129P|MYADM_uc002qcn.2_Missense_Mutation_p.S129P|MYADM_uc002qco.2_Missense_Mutation_p.S129P|MYADM_uc002qcp.2_Missense_Mutation_p.S129P	NM_001020820	NP_001018656	Q96S97	MYADM_HUMAN	myeloid-associated differentiation marker	129	MARVEL 1.					integral to membrane				ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.0488)		CCAGTTCCTGTCCCACGGCCG	0.657												
LILRB5	10990	broad.mit.edu	37	19	54754762	54754762	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:54754762T>C	uc002qex.2	-	13	1772	c.1661A>G	c.(1660-1662)TAC>TGC	p.Y554C	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_3'UTR|LILRB5_uc002qey.2_Missense_Mutation_p.Y555C|LILRB5_uc002qez.2_Missense_Mutation_p.Y455C|LILRB5_uc002qfa.1_3'UTR	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	554	ITIM motif 1.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TAGCTGGGCGTAGGTCACATC	0.647												
LENG8	114823	broad.mit.edu	37	19	54963842	54963842	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:54963842G>A	uc002qfv.1	+	4	370	c.226G>A	c.(226-228)GCA>ACA	p.A76T	LENG8_uc002qfw.2_Missense_Mutation_p.A76T			Q96PV6	LENG8_HUMAN	RecName: Full=Leukocyte receptor cluster member 8;	76							protein binding			central_nervous_system(1)|pancreas(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.139)		CGTGTCCCAGGCAGAAGCCTC	0.572												
LENG8	114823	broad.mit.edu	37	19	54969703	54969703	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:54969703A>G	uc002qfv.1	+	14	2276	c.2132A>G	c.(2131-2133)TAT>TGT	p.Y711C	LENG8_uc002qfw.2_Intron			Q96PV6	LENG8_HUMAN	RecName: Full=Leukocyte receptor cluster member 8;	711							protein binding			central_nervous_system(1)|pancreas(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.139)		ATCAAAACGTATGTGGTGCCA	0.622												
NLRP2	55655	broad.mit.edu	37	19	55489171	55489171	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:55489171G>A	uc002qij.2	+	4	463	c.377G>A	c.(376-378)CGC>CAC	p.R126H	NLRP2_uc010yfp.1_Missense_Mutation_p.R103H|NLRP2_uc010esn.2_Intron|NLRP2_uc010eso.2_Missense_Mutation_p.R126H|NLRP2_uc010esp.2_Missense_Mutation_p.R126H	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	126					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		ATGCTGGAGCGCTTCAAAACA	0.537												
PTPRH	5794	broad.mit.edu	37	19	55697344	55697344	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:55697344A>G	uc002qjq.2	-	17	2860	c.2787T>C	c.(2785-2787)TGT>TGC	p.C929C	PTPRH_uc010esv.2_Silent_p.C751C	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	929	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		AGTAATGCTCACACTTCACCT	0.597												
SAPS1	22870	broad.mit.edu	37	19	55753611	55753611	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:55753611G>A	uc002qjw.3	-	7	1010	c.768C>T	c.(766-768)TTC>TTT	p.F256F	SAPS1_uc002qjv.2_Silent_p.F318F	NM_014931	NP_055746	Q9UPN7	PP6R1_HUMAN	SAPS domain family, member 1	256	Interaction with PPP6C.				regulation of phosphoprotein phosphatase activity	cytoplasm	protein phosphatase binding				0		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0449)		GCTCCCCCTCGAACATGTTGC	0.657												
HSPBP1	23640	broad.mit.edu	37	19	55776758	55776758	+	Splice_Site	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:55776758C>A	uc002qjx.2	-	6	1142	c.1032_splice	c.e6-1	p.S344_splice	HSPBP1_uc002qjy.2_Splice_Site_p.S298_splice|HSPBP1_uc002qkb.2_Intron|HSPBP1_uc002qka.2_Splice_Site_p.S298_splice|HSPBP1_uc002qkd.2_Splice_Site_p.S298_splice|HSPBP1_uc002qkc.2_Splice_Site_p.S298_splice|uc002qke.2_5'Flank	NM_012267	NP_036399	Q9NZL4	HPBP1_HUMAN	hsp70-interacting protein						positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein folding		enzyme inhibitor activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		TGTCACCAGGCTGTGAGGGAC	0.532												
UBE2S	27338	broad.mit.edu	37	19	55918226	55918226	+	Silent	SNP	G	G	A	rs139337996	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:55918226G>A	uc002qkx.1	-	2	476	c.108C>T	c.(106-108)AAC>AAT	p.N36N	uc002qky.2_5'Flank	NM_014501	NP_055316	Q16763	UBE2S_HUMAN	ubiquitin-conjugating enzyme E2S	36					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|exit from mitosis|free ubiquitin chain polymerization|protein K11-linked ubiquitination|protein K27-linked ubiquitination|protein K29-linked ubiquitination|protein K6-linked ubiquitination|protein K63-linked ubiquitination	anaphase-promoting complex	ATP binding|ubiquitin-protein ligase activity				0	Breast(117;0.155)		LUSC - Lung squamous cell carcinoma(43;0.13)|BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.11)		GGTCCTCCTCGTTGGGAAAGA	0.587												
NLRP13	126204	broad.mit.edu	37	19	56413559	56413559	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:56413559G>A	uc010ygg.1	-	9	2656	c.2631C>T	c.(2629-2631)TGC>TGT	p.C877C		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	877							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CTGCCAGCTGGCAAAACCAGA	0.602												
ZNF582	147948	broad.mit.edu	37	19	56896263	56896263	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:56896263T>C	uc002qmz.1	-	5	682	c.523A>G	c.(523-525)AAA>GAA	p.K175E	ZNF582_uc002qmy.2_Missense_Mutation_p.K206E	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	175	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		TTTCTACATTTATTATACCCA	0.343												
ZNF471	57573	broad.mit.edu	37	19	57036268	57036268	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57036268A>T	uc002qnh.2	+	5	965	c.832A>T	c.(832-834)ATT>TTT	p.I278F		NM_020813	NP_065864	Q9BX82	ZN471_HUMAN	zinc finger protein 471	278	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0307)		TGAACACCTTATTCAGCATCA	0.398												
ZFP28	140612	broad.mit.edu	37	19	57065823	57065823	+	Missense_Mutation	SNP	G	G	A	rs142195358		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57065823G>A	uc002qnj.2	+	8	1740	c.1669G>A	c.(1669-1671)GGA>AGA	p.G557R	uc002qnk.1_Intron	NM_020828	NP_065879	Q8NHY6	ZFP28_HUMAN	zinc finger protein 28	557					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0302)		GATTCATACCGGAGAAAAACC	0.393												
PEG3	5178	broad.mit.edu	37	19	57327050	57327050	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57327050G>A	uc002qnu.2	-	7	3111	c.2760C>T	c.(2758-2760)GGC>GGT	p.G920G	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.G891G|PEG3_uc002qnv.2_Silent_p.G920G|PEG3_uc002qnw.2_Silent_p.G796G|PEG3_uc002qnx.2_Silent_p.G794G|PEG3_uc010etr.2_Silent_p.G920G	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	920					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CAGAGAATTCGCCATCCTTCT	0.438												
PEG3	5178	broad.mit.edu	37	19	57330063	57330063	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57330063T>C	uc002qnu.2	-	5	1028	c.677A>G	c.(676-678)GAA>GGA	p.E226G	ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnr.2_Missense_Mutation_p.E101G|ZIM2_uc002qnq.2_Missense_Mutation_p.E101G|ZIM2_uc010etp.2_Missense_Mutation_p.E101G|ZIM2_uc010ygs.1_Missense_Mutation_p.E101G|PEG3_uc002qnt.2_Missense_Mutation_p.E227G|PEG3_uc002qnv.2_Missense_Mutation_p.E226G|PEG3_uc002qnw.2_Missense_Mutation_p.E101G|PEG3_uc002qnx.2_Missense_Mutation_p.E100G|PEG3_uc010etr.2_Missense_Mutation_p.E226G	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	226					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TTGGTATGATTCAGCATCCTA	0.458												
PEG3	5178	broad.mit.edu	37	19	57334145	57334145	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57334145A>G	uc002qnu.2	-	3	892	c.541T>C	c.(541-543)TCC>CCC	p.S181P	ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnr.2_Missense_Mutation_p.S56P|ZIM2_uc002qnq.2_Missense_Mutation_p.S56P|ZIM2_uc010etp.2_Missense_Mutation_p.S56P|ZIM2_uc010ygs.1_Missense_Mutation_p.S56P|PEG3_uc002qnt.2_Missense_Mutation_p.S182P|PEG3_uc002qnv.2_Missense_Mutation_p.S181P|PEG3_uc002qnw.2_Missense_Mutation_p.S56P|PEG3_uc002qnx.2_Missense_Mutation_p.S55P|PEG3_uc010etr.2_Missense_Mutation_p.S181P	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	181					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CTGGTGTGGGACCAGCGGTCT	0.537												
USP29	57663	broad.mit.edu	37	19	57641676	57641676	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57641676A>G	uc002qny.2	+	4	1989	c.1633A>G	c.(1633-1635)ACC>GCC	p.T545A		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	545					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CAATGAAAGCACCAAACCACC	0.418												
ZNF264	9422	broad.mit.edu	37	19	57722986	57722986	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57722986A>G	uc002qob.2	+	4	934	c.521A>G	c.(520-522)GAG>GGG	p.E174G		NM_003417	NP_003408	O43296	ZN264_HUMAN	zinc finger protein 264	174					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0135)		ATTGGACAGGAGCAAGTCTCT	0.463												
AURKC	6795	broad.mit.edu	37	19	57743127	57743127	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57743127A>G	uc002qoe.2	+	2	265	c.76A>G	c.(76-78)ACA>GCA	p.T26A	AURKC_uc002qoc.2_Missense_Mutation_p.T7A|AURKC_uc002qod.2_5'UTR|AURKC_uc010etv.2_Missense_Mutation_p.T23A	NM_001015878	NP_001015878	Q9UQB9	AURKC_HUMAN	aurora kinase C isoform 1	26					cell cycle|cytokinesis	condensed chromosome|cytoplasm|midbody|spindle midzone	ATP binding|protein serine/threonine kinase activity			lung(4)|ovary(2)	6		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0122)		AGCAAACCAAAcagcccagca	0.259												
AURKC	6795	broad.mit.edu	37	19	57746724	57746724	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57746724A>T	uc002qoe.2	+	7	1058	c.869A>T	c.(868-870)CAC>CTC	p.H290L	AURKC_uc002qoc.2_Missense_Mutation_p.H271L|AURKC_uc002qod.2_Missense_Mutation_p.H256L|AURKC_uc010etv.2_Missense_Mutation_p.H287L	NM_001015878	NP_001015878	Q9UQB9	AURKC_HUMAN	aurora kinase C isoform 1	290	Protein kinase.				cell cycle|cytokinesis	condensed chromosome|cytoplasm|midbody|spindle midzone	ATP binding|protein serine/threonine kinase activity			lung(4)|ovary(2)	6		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0122)		ATCCTGAAGCACCCCTGGGTT	0.597												
ZNF543	125919	broad.mit.edu	37	19	57839139	57839139	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57839139A>G	uc002qoi.1	+	4	654	c.309A>G	c.(307-309)TTA>TTG	p.L103L		NM_213598	NP_998763	Q08ER8	ZN543_HUMAN	zinc finger protein 543	103					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)|pancreas(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		AGGAAGTCTTACTCCAGGAAC	0.463												
ZNF543	125919	broad.mit.edu	37	19	57839764	57839764	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57839764G>A	uc002qoi.1	+	4	1279	c.934G>A	c.(934-936)GTG>ATG	p.V312M		NM_213598	NP_998763	Q08ER8	ZN543_HUMAN	zinc finger protein 543	312	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)|pancreas(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		AAAACCCTTTGTGTGCAAAGA	0.498												
ZNF548	147694	broad.mit.edu	37	19	57910856	57910856	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57910856T>A	uc002qom.2	+	3	1451	c.1201T>A	c.(1201-1203)TCA>ACA	p.S401T	ZNF547_uc002qpm.3_Intron|ZNF548_uc002qon.2_Missense_Mutation_p.S404T	NM_152909	NP_690873	Q8NEK5	ZN548_HUMAN	zinc finger protein 548	401	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATGTGGGAAATCATTTAGGTA	0.448												
ZNF17	7565	broad.mit.edu	37	19	57931169	57931169	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57931169C>T	uc002qoo.1	+	3	540	c.309C>T	c.(307-309)GAC>GAT	p.D103D	ZNF547_uc002qpm.3_Intron|ZNF17_uc002qop.1_Silent_p.D105D	NM_006959	NP_008890	P17021	ZNF17_HUMAN	zinc finger protein 17	103					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0234)|GBM - Glioblastoma multiforme(193;0.000426)|Lung(386;0.176)		CTGAGCATGACGGAACACACC	0.512												
ZNF749	388567	broad.mit.edu	37	19	57956392	57956392	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57956392A>G	uc002qoq.2	+	3	2130	c.1876A>G	c.(1876-1878)ACA>GCA	p.T626A	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	626	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		ATATCGCTGTACACTGAGTAG	0.358												
ZNF416	55659	broad.mit.edu	37	19	58083888	58083888	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58083888C>T	uc002qpf.2	-	4	1555	c.1384G>A	c.(1384-1386)GCA>ACA	p.A462T	ZNF547_uc002qpm.3_Intron	NM_017879	NP_060349	Q9BWM5	ZN416_HUMAN	zinc finger protein 416	462					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		GGCCTTTCTGCAGTGTGAACT	0.438												
ZNF211	10520	broad.mit.edu	37	19	58152513	58152513	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58152513T>C	uc002qpq.2	+	3	839	c.659T>C	c.(658-660)GTG>GCG	p.V220A	ZNF211_uc010yhb.1_Missense_Mutation_p.V224A|ZNF211_uc002qpp.2_Missense_Mutation_p.V233A|ZNF211_uc002qpr.2_Missense_Mutation_p.V284A|ZNF211_uc002qps.2_Missense_Mutation_p.V285A|ZNF211_uc002qpt.2_Missense_Mutation_p.V232A|ZNF211_uc010yhc.1_Missense_Mutation_p.V232A|ZNF211_uc010yhd.1_Missense_Mutation_p.V159A|ZNF211_uc010yhe.1_Missense_Mutation_p.V211A	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	220						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AAGTGTGCGGTGGCCTTTTAC	0.468												
ZNF671	79891	broad.mit.edu	37	19	58232449	58232449	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58232449G>A	uc002qpz.3	-	4	1104	c.1005C>T	c.(1003-1005)CAC>CAT	p.H335H	ZNF776_uc002qpx.2_Intron|ZNF671_uc010eug.2_Silent_p.H258H|ZNF671_uc010yhf.1_Silent_p.H237H	NM_024833	NP_079109	Q8TAW3	ZN671_HUMAN	zinc finger protein 671	335	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TTTCTCCAGTGTGAACTGTCT	0.473												
ZNF587	84914	broad.mit.edu	37	19	58369951	58369951	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58369951G>A	uc002qql.2	+	3	309	c.171G>A	c.(169-171)TGG>TGA	p.W57*	ZNF587_uc002qqb.2_Nonsense_Mutation_p.W14*|ZNF587_uc010yhh.1_Nonsense_Mutation_p.W14*|ZNF587_uc002qqi.1_Nonsense_Mutation_p.W14*|ZNF587_uc002qqj.1_RNA|ZNF814_uc002qqk.2_Intron|ZNF587_uc010yhk.1_Nonsense_Mutation_p.W56*	NM_032828	NP_116217	Q96SQ5	ZN587_HUMAN	zinc finger protein 587	57	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)		CAGGTTGTTGGTGTGGATCAA	0.478												
ZNF418	147686	broad.mit.edu	37	19	58439288	58439288	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58439288A>G	uc002qqs.1	-	4	553	c.261T>C	c.(259-261)TGT>TGC	p.C87C	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Silent_p.C2C	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	87	KRAB.|C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		AGATCGCGCCACACATTTCAC	0.498												
ZNF256	10172	broad.mit.edu	37	19	58453789	58453789	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58453789A>G	uc002qqu.2	-	3	622	c.387T>C	c.(385-387)TTT>TTC	p.F129F	ZNF256_uc010euj.2_5'UTR	NM_005773	NP_005764	Q9Y2P7	ZN256_HUMAN	zinc finger protein 256	129					multicellular organismal development|negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0155)		GGTATGCAGTAAATTGTAATT	0.453												
ZNF135	7694	broad.mit.edu	37	19	58579383	58579383	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58579383A>G	uc010yhq.1	+	5	1663	c.1567A>G	c.(1567-1569)AAA>GAA	p.K523E	ZNF135_uc002qre.2_Missense_Mutation_p.K511E|ZNF135_uc002qrd.1_Intron|ZNF135_uc002qrf.2_Missense_Mutation_p.K469E|ZNF135_uc002qrg.2_Missense_Mutation_p.K481E|ZNF135_uc010yhr.1_Missense_Mutation_p.K332E	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	523					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		GTCCCTCACCAAACATCAGCG	0.557												
ZNF544	27300	broad.mit.edu	37	19	58773028	58773028	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58773028G>A	uc010euo.2	+	7	1530	c.1056G>A	c.(1054-1056)AAG>AAA	p.K352K	ZNF544_uc010yhw.1_RNA|ZNF544_uc010yhx.1_Silent_p.K324K|ZNF544_uc010yhy.1_Silent_p.K324K|ZNF544_uc002qrt.3_Silent_p.K210K|ZNF544_uc002qru.3_Silent_p.K210K|uc002qrx.1_Intron	NM_014480	NP_055295	Q6NX49	ZN544_HUMAN	zinc finger protein 544	352					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		all_cancers(17;4.17e-12)|all_epithelial(17;1.25e-08)|Colorectal(82;0.000256)|Lung NSC(17;0.000607)|all_lung(17;0.0024)|all_neural(62;0.0412)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.17)|GBM - Glioblastoma multiforme(193;0.018)		CTACAGAGAAGCCATCTGTGT	0.483												
A1BG	1	broad.mit.edu	37	19	58862876	58862876	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58862876A>G	uc002qsd.3	-	5	853	c.791T>C	c.(790-792)TTT>TCT	p.F264S	NCRNA00181_uc002qse.2_Intron|A1BG_uc002qsf.1_RNA|NCRNA00181_uc002qsg.2_5'Flank	NM_130786	NP_570602	P04217	A1BG_HUMAN	alpha 1B-glycoprotein precursor	264	Ig-like V-type 3.					extracellular region					0		all_cancers(17;3.04e-16)|all_epithelial(17;7.77e-12)|Lung NSC(17;3.25e-05)|Colorectal(82;5.46e-05)|all_lung(17;0.000129)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(17;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0269)		GTTCAGGTGAAAGAAGATGCG	0.647												
A1BG	1	broad.mit.edu	37	19	58869006	58869006	+	RNA	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58869006C>T	uc002qsf.1	-	5		c.647G>A			ZNF497_uc002qsh.1_5'UTR|ZNF497_uc002qsi.1_5'UTR|uc002qsj.1_Missense_Mutation_p.A126V|uc002qsk.1_5'Flank			P04217	A1BG_HUMAN	Homo sapiens primary hepatoblastoma mRNA for alpha-1-B glycoprotein precursor, partial cds, clone:HYST2477.							extracellular region					0		all_cancers(17;3.04e-16)|all_epithelial(17;7.77e-12)|Lung NSC(17;3.25e-05)|Colorectal(82;5.46e-05)|all_lung(17;0.000129)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(17;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0269)		CTCCATCTCGCGCCTGTGACC	0.597												
ZNF324B	388569	broad.mit.edu	37	19	58966843	58966843	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58966843A>G	uc002qsv.1	+	4	639	c.532A>G	c.(532-534)ACC>GCC	p.T178A	ZNF324B_uc002qsu.1_Missense_Mutation_p.T168A|ZNF324B_uc010euq.1_Missense_Mutation_p.T178A	NM_207395	NP_997278	Q6AW86	Z324B_HUMAN	zinc finger protein 324B	178					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		CAGGGAAAAGACCTTCACAGA	0.667												
ZNF446	55663	broad.mit.edu	37	19	58988663	58988663	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58988663C>A	uc002qsz.2	+	2	195	c.78C>A	c.(76-78)CGC>CGA	p.R26R	ZNF446_uc002qta.2_Silent_p.R26R|ZNF446_uc010eur.2_Silent_p.R26R	NM_017908	NP_060378	Q9NWS9	ZN446_HUMAN	zinc finger protein 446	26	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		AGACTGCCCGCCTCCGCTTCC	0.662												
ZNF446	55663	broad.mit.edu	37	19	58989496	58989496	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58989496A>G	uc002qsz.2	+	4	692	c.575A>G	c.(574-576)AAC>AGC	p.N192S	ZNF446_uc002qta.2_Missense_Mutation_p.N192S|ZNF446_uc010eur.2_Missense_Mutation_p.N192S	NM_017908	NP_060378	Q9NWS9	ZN446_HUMAN	zinc finger protein 446	192					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		CCTGAGGGGAACCATGGACAC	0.607												
SLC27A5	10998	broad.mit.edu	37	19	59012015	59012015	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:59012015T>A	uc002qtc.2	-	5	1351	c.1241A>T	c.(1240-1242)GAT>GTT	p.D414V	SLC27A5_uc002qtb.2_5'Flank	NM_012254	NP_036386	Q9Y2P5	S27A5_HUMAN	solute carrier family 27 (fatty acid	414	Cytoplasmic (Probable).				bile acid and bile salt transport|bile acid biosynthetic process|very long-chain fatty acid metabolic process	endoplasmic reticulum membrane|integral to membrane	ATP binding|cholate-CoA ligase activity|long-chain fatty acid-CoA ligase activity				0		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.181)		CTCCCACACATCAGCCCGTAG	0.577												
TRIM28	10155	broad.mit.edu	37	19	59059476	59059476	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:59059476C>T	uc002qtg.1	+	7	1319	c.1030C>T	c.(1030-1032)CAC>TAC	p.H344Y	TRIM28_uc010eut.1_Missense_Mutation_p.H262Y|TRIM28_uc002qth.1_5'Flank	NM_005762	NP_005753	Q13263	TIF1B_HUMAN	tripartite motif-containing 28 protein	344	RBCC domain.|Leucine zipper alpha helical coiled-coil region.				epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent	nucleoplasm	chromo shadow domain binding|ligase activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0434)|all cancers(4;1.39e-13)|Epithelial(4;1.01e-10)|OV - Ovarian serous cystadenocarcinoma(4;2.34e-09)|GBM - Glioblastoma multiforme(193;0.0102)|Lung(386;0.179)		GCACCAGGAGCACATTCTGCG	0.557												
MZF1	7593	broad.mit.edu	37	19	59073626	59073626	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:59073626C>T	uc002qto.2	-	6	2579	c.2018G>A	c.(2017-2019)CGC>CAC	p.R673H	LOC100131691_uc002qtm.2_Intron|MZF1_uc002qtn.2_Missense_Mutation_p.R673H	NM_198055	NP_932172	P28698	MZF1_HUMAN	zinc finger protein 42 isoform 2	673	C2H2-type 11.				viral reproduction	nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0443)|all cancers(4;7.92e-14)|Epithelial(4;5.57e-11)|OV - Ovarian serous cystadenocarcinoma(4;1.13e-09)|GBM - Glioblastoma multiforme(193;0.0108)|Lung(386;0.182)		CGTGTGGATGCGCCGGTGCTG	0.697												
ACP1	52	broad.mit.edu	37	2	271876	271876	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:271876T>C	uc002qwg.2	+	2	150	c.54T>C	c.(52-54)TGT>TGC	p.C18C	ACP1_uc002qwd.2_Silent_p.C18C|ACP1_uc002qwe.3_RNA|ACP1_uc002qwh.2_RNA|ACP1_uc002qwf.2_Silent_p.C18C	NM_007099	NP_009030	P24666	PPAC_HUMAN	acid phosphatase 1, soluble isoform b	18				CLGNICRS -> PARREAAR (in Ref. 5; AAB27085).		cytoplasm|internal side of plasma membrane|nucleus|soluble fraction	acid phosphatase activity|identical protein binding|non-membrane spanning protein tyrosine phosphatase activity			skin(1)	1	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00175)|Lung NSC(108;0.216)|all_epithelial(98;0.236)		all cancers(51;0.000391)|Epithelial(75;0.00281)|OV - Ovarian serous cystadenocarcinoma(76;0.00542)|GBM - Glioblastoma multiforme(21;0.127)		GTAACATTTGTCGATCACCCA	0.453												
SNTG2	54221	broad.mit.edu	37	2	1271265	1271265	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:1271265C>T	uc002qwq.2	+	14	1334	c.1206C>T	c.(1204-1206)AAC>AAT	p.N402N	SNTG2_uc010ewi.2_Silent_p.N275N	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	402	PH.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		ATGTTTTCAACGTGGAGCTTG	0.512												
PXDN	7837	broad.mit.edu	37	2	1652950	1652950	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:1652950G>A	uc002qxa.2	-	17	2666	c.2602C>T	c.(2602-2604)CGG>TGG	p.R868W		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	868					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		CTCCTGGCCCGGGAGTCATTG	0.662												
RNF144A	9781	broad.mit.edu	37	2	7170296	7170296	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:7170296C>T	uc002qys.2	+	8	1139	c.697C>T	c.(697-699)CGG>TGG	p.R233W	RNF144A_uc002qyt.2_Missense_Mutation_p.R82W	NM_014746	NP_055561	P50876	R144A_HUMAN	ring finger protein 144	233						Golgi apparatus|integral to membrane	ligase activity|zinc ion binding			ovary(1)|kidney(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)	all_cancers(51;0.226)		OV - Ovarian serous cystadenocarcinoma(76;0.195)		GGGACCCTGCCGGAACAAGCT	0.522												
KIDINS220	57498	broad.mit.edu	37	2	8871241	8871241	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:8871241C>T	uc002qzc.2	-	30	5107	c.4925G>A	c.(4924-4926)CGG>CAG	p.R1642Q	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Missense_Mutation_p.R1543Q|KIDINS220_uc002qzb.2_Missense_Mutation_p.R496Q	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1642	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AATGGACATCCGAGCTATAAT	0.493												
KIDINS220	57498	broad.mit.edu	37	2	8871508	8871508	+	Missense_Mutation	SNP	G	G	A	rs76169344	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:8871508G>A	uc002qzc.2	-	30	4840	c.4658C>T	c.(4657-4659)CCG>CTG	p.P1553L	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Missense_Mutation_p.P1454L|KIDINS220_uc002qzb.2_Missense_Mutation_p.P407L	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1553	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TGGAGACTTCGGCACTCTCTC	0.453												
KIDINS220	57498	broad.mit.edu	37	2	8967216	8967216	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:8967216A>G	uc002qzc.2	-	2	190	c.8T>C	c.(7-9)GTT>GCT	p.V3A	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_5'UTR|KIDINS220_uc010yiw.1_Missense_Mutation_p.V3A	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	3	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TGATATCAAAACTGACATTTT	0.284												
ADAM17	6868	broad.mit.edu	37	2	9630364	9630364	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:9630364G>A	uc002qzu.2	-	19	2600	c.2417C>T	c.(2416-2418)GCT>GTT	p.A806V	IAH1_uc010yiz.1_Intron|ADAM17_uc010ewy.2_Missense_Mutation_p.A789V|ADAM17_uc010ewz.2_Missense_Mutation_p.A149V	NM_003183	NP_003174	P78536	ADA17_HUMAN	a disintegrin and metalloprotease domain 17	806	Cytoplasmic (Potential).				B cell differentiation|cell adhesion mediated by integrin|epidermal growth factor receptor signaling pathway|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|germinal center formation|membrane protein intracellular domain proteolysis|negative regulation of interleukin-8 production|nerve growth factor receptor signaling pathway|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of chemokine production|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of protein phosphorylation|positive regulation of T cell chemotaxis|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of mast cell apoptosis|response to drug|response to high density lipoprotein particle stimulus|response to hypoxia|response to lipopolysaccharide|spleen development|T cell differentiation in thymus|wound healing, spreading of epidermal cells	actin cytoskeleton|apical plasma membrane|cell surface|cytoplasm|integral to plasma membrane|membrane raft	integrin binding|interleukin-6 receptor binding|metalloendopeptidase activity|PDZ domain binding|SH3 domain binding|zinc ion binding			lung(1)|kidney(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.225)		AAAGGAGGCAGCCTTTTCACT	0.463												
YWHAQ	10971	broad.mit.edu	37	2	9727550	9727550	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:9727550T>C	uc002qzw.2	-	4	835	c.671A>G	c.(670-672)AAC>AGC	p.N224S	YWHAQ_uc002qzx.2_Missense_Mutation_p.N224S	NM_006826	NP_006817	P27348	1433T_HUMAN	tyrosine 3/tryptophan 5 -monooxygenase	224					negative regulation of transcription, DNA-dependent	centrosome|nucleus	protein N-terminus binding			breast(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.241)		CACTGTTAGGTTGTCTCTAAG	0.328												
RRM2	6241	broad.mit.edu	37	2	10269216	10269216	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:10269216A>G	uc002rah.2	+	9	1143	c.952A>G	c.(952-954)ACT>GCT	p.T318A		NM_001034	NP_001025	P31350	RIR2_HUMAN	ribonucleotide reductase M2 polypeptide isoform	318					deoxyribonucleoside diphosphate metabolic process|deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol	ribonucleoside-diphosphate reductase activity|transition metal ion binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.188)|OV - Ovarian serous cystadenocarcinoma(76;0.221)		GATGAATTGCACTCTAATGAA	0.403												
NOL10	79954	broad.mit.edu	37	2	10822127	10822127	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:10822127A>G	uc002raq.2	-	3	306	c.181T>C	c.(181-183)TCA>CCA	p.S61P	NOL10_uc010yje.1_Missense_Mutation_p.S61P|NOL10_uc010yjf.1_Missense_Mutation_p.S11P|NOL10_uc002rap.2_Missense_Mutation_p.S61P|NOL10_uc002rar.2_5'UTR	NM_024894	NP_079170	Q9BSC4	NOL10_HUMAN	nucleolar protein 10	61	WD 1.					nucleolus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.207)		CCATCTTTTGACACCTTAATA	0.358												
PQLC3	130814	broad.mit.edu	37	2	11312126	11312126	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:11312126A>G	uc002rbc.2	+	5	563	c.430A>G	c.(430-432)ACT>GCT	p.T144A	PQLC3_uc010yjk.1_Missense_Mutation_p.T144A	NM_152391	NP_689604	Q8N755	PQLC3_HUMAN	PQ loop repeat containing 3 precursor	144						integral to membrane					0	all_hematologic(175;0.0797)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.0978)|OV - Ovarian serous cystadenocarcinoma(76;0.132)		AGACTCAGGAACTGTGAGTGC	0.493												
NBAS	51594	broad.mit.edu	37	2	15358989	15358989	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:15358989C>T	uc002rcc.1	-	48	6366	c.6340G>A	c.(6340-6342)GGG>AGG	p.G2114R	NBAS_uc002rcb.1_Intron|NBAS_uc010exl.1_Missense_Mutation_p.G1186R|NBAS_uc002rcd.1_Intron	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	2114										ovary(2)|liver(1)|skin(1)	4						AATGATTGCCCCAAAATCTGC	0.577												
SMC6	79677	broad.mit.edu	37	2	17896257	17896257	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:17896257T>C	uc002rco.2	-	16	1897	c.1601A>G	c.(1600-1602)TAT>TGT	p.Y534C	SMC6_uc010exo.2_Missense_Mutation_p.Y534C|SMC6_uc002rcn.2_Missense_Mutation_p.Y534C|SMC6_uc002rcp.1_Missense_Mutation_p.Y560C|SMC6_uc002rcq.2_Missense_Mutation_p.Y560C	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	534	Flexible hinge.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					ATGGCAACAATAGGCCTGCAG	0.428												
RHOB	388	broad.mit.edu	37	2	20647623	20647623	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:20647623C>A	uc002rdv.2	+	1	789	c.397C>A	c.(397-399)CGC>AGC	p.R133S		NM_004040	NP_004031	P62745	RHOB_HUMAN	ras homolog gene family, member B precursor	133					angiogenesis|axon guidance|cell adhesion|endosome to lysosome transport|negative regulation of cell cycle|platelet activation|positive regulation of angiogenesis|protein transport|regulation of small GTPase mediated signal transduction|Rho protein signal transduction|transformed cell apoptosis	cytosol|late endosome membrane|nucleus|plasma membrane	GTP binding|GTPase activity|protein binding			ovary(1)|lung(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)	all_epithelial(98;4.19e-09)|Lung NSC(108;0.00452)|Ovarian(717;0.0164)		OV - Ovarian serous cystadenocarcinoma(76;1.14e-22)|Epithelial(75;7.84e-19)		AGAGCTGGCCCGCATGAAGCA	0.622												
APOB	338	broad.mit.edu	37	2	21242613	21242613	+	Missense_Mutation	SNP	G	G	A	rs41288783	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:21242613G>A	uc002red.2	-	19	3109	c.2981C>T	c.(2980-2982)CCG>CTG	p.P994L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	994					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCCGGTCAGCGGATAGTAGGA	0.542												
ITSN2	50618	broad.mit.edu	37	2	24480829	24480829	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:24480829A>G	uc002rfe.2	-	23	3074	c.2816T>C	c.(2815-2817)GTG>GCG	p.V939A	ITSN2_uc002rff.2_Missense_Mutation_p.V912A|ITSN2_uc002rfg.2_Missense_Mutation_p.V939A|ITSN2_uc002rfh.1_RNA	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	939	SH3 2.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCCTCCATGCACCTCCCCAAA	0.408												
ITSN2	50618	broad.mit.edu	37	2	24480952	24480952	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:24480952A>G	uc002rfe.2	-	23	2951	c.2693T>C	c.(2692-2694)GTA>GCA	p.V898A	ITSN2_uc002rff.2_Missense_Mutation_p.V871A|ITSN2_uc002rfg.2_Missense_Mutation_p.V898A|ITSN2_uc002rfh.1_RNA	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	898	SH3 2.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TAAGTTTTCTACCACTTGTCC	0.348												
NCOA1	8648	broad.mit.edu	37	2	24888673	24888673	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:24888673T>A	uc002rfk.2	+	4	403	c.145T>A	c.(145-147)TTA>ATA	p.L49I	NCOA1_uc010eye.2_Missense_Mutation_p.L49I|NCOA1_uc002rfi.2_Intron|NCOA1_uc002rfj.2_Missense_Mutation_p.L49I|NCOA1_uc002rfl.2_Missense_Mutation_p.L49I	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	49	Helix-loop-helix motif.|LXXLL motif 1.								PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACTAGCTGAGTTACTGTCTGC	0.378			T	PAX3	alveolar rhadomyosarcoma							
NCOA1	8648	broad.mit.edu	37	2	24928022	24928022	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:24928022C>T	uc002rfk.2	+	10	1275	c.1017C>T	c.(1015-1017)AGC>AGT	p.S339S	NCOA1_uc010eye.2_Silent_p.S339S|NCOA1_uc002rfi.2_Silent_p.S188S|NCOA1_uc002rfj.2_Silent_p.S339S|NCOA1_uc002rfl.2_Silent_p.S339S	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	339									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAATGCTTAGCGCCCACACCA	0.433			T	PAX3	alveolar rhadomyosarcoma							
CENPO	79172	broad.mit.edu	37	2	25039542	25039542	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:25039542C>T	uc002rfo.1	+	6	811	c.622C>T	c.(622-624)CCC>TCC	p.P208S	CENPO_uc002rfp.1_Missense_Mutation_p.P202S|CENPO_uc002rfq.1_Missense_Mutation_p.P208S	NM_024322	NP_077298	Q9BU64	CENPO_HUMAN	centromere protein O	208					cell division|CenH3-containing nucleosome assembly at centromere|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					CCTGACTGGGCCCTTGCAGAG	0.488												
POMC	5443	broad.mit.edu	37	2	25387620	25387620	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:25387620G>A	uc002rfy.1	-	3	285	c.22C>T	c.(22-24)CGC>TGC	p.R8C	POMC_uc002rfz.1_Missense_Mutation_p.R8C|POMC_uc002rga.1_Missense_Mutation_p.R8C	NM_001035256	NP_001030333	P01189	COLI_HUMAN	proopiomelanocortin preproprotein	8					cell-cell signaling|cellular nitrogen compound metabolic process|cellular pigmentation|generation of precursor metabolites and energy|hormone biosynthetic process|negative regulation of tumor necrosis factor production|neuropeptide signaling pathway|peptide hormone processing|positive regulation of transcription from RNA polymerase II promoter|regulation of appetite|regulation of blood pressure	extracellular space|stored secretory granule	hormone activity|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Hydrocortisone(DB00741)|Loperamide(DB00836)|Trilostane(DB01108)	GCCCCCGAGCGGCTGCAGCAC	0.607												
DNMT3A	1788	broad.mit.edu	37	2	25468893	25468893	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:25468893A>G	uc002rgc.2	-	12	1727	c.1470T>C	c.(1468-1470)ATT>ATC	p.I490I	DNMT3A_uc002rgd.2_Silent_p.I490I|DNMT3A_uc010eyi.2_RNA|DNMT3A_uc002rgb.2_Silent_p.I301I	NM_022552	NP_072046	Q9Y6K1	DNM3A_HUMAN	DNA cytosine methyltransferase 3 alpha isoform	490	ADD.				regulation of gene expression by genetic imprinting	cytoplasm|euchromatin|nuclear matrix	DNA (cytosine-5-)-methyltransferase activity|DNA binding|metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(133)|lung(4)|ovary(3)	140	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACTTACCCTCAATGTTCCGGC	0.607			Mis|F|N|S		AML							
C2orf18	54978	broad.mit.edu	37	2	27000990	27000990	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27000990C>T	uc002rhp.1	+	6	803	c.727C>T	c.(727-729)CGT>TGT	p.R243C	C2orf18_uc002rhq.1_Missense_Mutation_p.R160C|C2orf18_uc010eyo.1_Missense_Mutation_p.R190C|C2orf18_uc010ylc.1_Missense_Mutation_p.R96C	NM_017877	NP_060347	Q8N357	CB018_HUMAN	ANT2-binding protein precursor	243						integral to membrane|lysosomal membrane					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGGAAACCCTCGTGGGACACT	0.602												
TMEM214	54867	broad.mit.edu	37	2	27262941	27262941	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27262941A>G	uc002ria.3	+	15	1776	c.1666A>G	c.(1666-1668)ACC>GCC	p.T556A	TMEM214_uc010yle.1_RNA|TMEM214_uc002rib.3_Missense_Mutation_p.T511A	NM_017727	NP_060197	Q6NUQ4	TM214_HUMAN	transmembrane protein 214 isoform 1	556						integral to membrane	protein binding				0						CCACCTGCTCACCGTGGTGCG	0.627												
EMILIN1	11117	broad.mit.edu	37	2	27305042	27305042	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27305042A>G	uc002rii.3	+	4	1031	c.603A>G	c.(601-603)GGA>GGG	p.G201G	EMILIN1_uc010eyq.1_Silent_p.G201G|EMILIN1_uc002rik.3_5'Flank	NM_007046	NP_008977	Q9Y6C2	EMIL1_HUMAN	elastin microfibril interfacer 1 precursor	201					cell adhesion	collagen				pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCCTGCAAGGACTGAGCGGGC	0.672												
ABHD1	84696	broad.mit.edu	37	2	27351433	27351433	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27351433T>C	uc002rit.2	+	2	399	c.239T>C	c.(238-240)GTC>GCC	p.V80A	ABHD1_uc002riu.2_RNA|ABHD1_uc002riv.2_Intron	NM_032604	NP_115993	Q96SE0	ABHD1_HUMAN	abhydrolase domain-containing protein 1	80						integral to membrane	carboxylesterase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATCTTCCAAGTCCTCCTGCAG	0.507												
SLC5A6	8884	broad.mit.edu	37	2	27430127	27430127	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27430127T>C	uc002rjd.2	-	3	783	c.392A>G	c.(391-393)GAG>GGG	p.E131G	SLC5A6_uc010eyv.1_Missense_Mutation_p.E131G|SLC5A6_uc002rje.1_Missense_Mutation_p.E131G	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	131					biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	CCTGCTCACCTCATAGGCACT	0.577												
C2orf28	51374	broad.mit.edu	37	2	27439752	27439752	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27439752C>A	uc002rjf.2	+	7	964	c.791C>A	c.(790-792)GCC>GAC	p.A264D	C2orf28_uc002rjg.2_Missense_Mutation_p.A151D|C2orf28_uc002rjh.2_RNA|CAD_uc002rji.2_5'Flank|CAD_uc010eyw.2_5'Flank	NM_080592	NP_542159	Q6UW56	APR3_HUMAN	apoptosis related protein 3 isoform b	209	Helical; (Potential).					integral to membrane|plasma membrane				skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATTCTGGGAGCCACCACTCTA	0.493												
CAD	790	broad.mit.edu	37	2	27444118	27444118	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27444118A>G	uc002rji.2	+	3	417	c.255A>G	c.(253-255)GCA>GCG	p.A85A	CAD_uc010eyw.2_Silent_p.A85A	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	85	GATase (Glutamine amidotransferase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	ACGTAGCAGCACTGGTAGTGG	0.542												
SNX17	9784	broad.mit.edu	37	2	27598544	27598544	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27598544A>G	uc002rkg.1	+	10	1168	c.946A>G	c.(946-948)ACC>GCC	p.T316A	SNX17_uc010ylj.1_Missense_Mutation_p.T296A|SNX17_uc010ylk.1_Missense_Mutation_p.T102A|SNX17_uc010eza.1_Missense_Mutation_p.T102A|SNX17_uc002rki.1_RNA|SNX17_uc002rkh.1_Missense_Mutation_p.T102A|SNX17_uc010yll.1_Missense_Mutation_p.T102A|SNX17_uc010ylm.1_Missense_Mutation_p.T102A|SNX17_uc010yln.1_Missense_Mutation_p.T304A|SNX17_uc010ylo.1_Missense_Mutation_p.T234A|SNX17_uc010ylp.1_Missense_Mutation_p.T291A|SNX17_uc010ylq.1_Missense_Mutation_p.T102A	NM_014748	NP_055563	Q15036	SNX17_HUMAN	sorting nexin 17	316					cell communication|endosome transport|intracellular protein transport|regulation of endocytosis|signal transduction	cytoplasmic vesicle membrane|cytosol|early endosome|Golgi apparatus	low-density lipoprotein particle receptor binding|phosphatidylinositol binding|protein C-terminus binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTTCCGGGTCACCCGCATGCG	0.652												
IFT172	26160	broad.mit.edu	37	2	27670413	27670413	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27670413G>A	uc002rku.2	-	42	4679	c.4628C>T	c.(4627-4629)ACG>ATG	p.T1543M	IFT172_uc010ezb.2_RNA	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	1543					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					TGCAGAGCGCGTGGCATAGTA	0.512												
C2orf16	84226	broad.mit.edu	37	2	27802997	27802997	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27802997A>G	uc002rkz.3	+	1	3609	c.3558A>G	c.(3556-3558)AGA>AGG	p.R1186R	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1186										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					AAAGAGATAGACCCGTCATAC	0.443												
GPN1	11321	broad.mit.edu	37	2	27854759	27854759	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27854759T>C	uc010ymc.1	+	4	367	c.346T>C	c.(346-348)TTT>CTT	p.F116L	ZNF512_uc010yly.1_RNA|CCDC121_uc002rle.2_5'Flank|GPN1_uc010ezf.2_Missense_Mutation_p.F90L|GPN1_uc010yma.1_Missense_Mutation_p.F23L|GPN1_uc010ymb.1_Intron|GPN1_uc010ymd.1_Intron|GPN1_uc010yme.1_Missense_Mutation_p.F116L|GPN1_uc010ezg.1_Intron	NM_007266	NP_009197	Q9HCN4	GPN1_HUMAN	GPN-loop GTPase 1 isoform a	102						cytoplasm	GTP binding|nucleoside-triphosphatase activity|protein binding				0						TGCTACCAGATTTGATCAGGT	0.378												
MRPL33	9553	broad.mit.edu	37	2	27994648	27994648	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27994648T>C	uc002rlm.1	+	1	65	c.4T>C	c.(4-6)TTC>CTC	p.F2L	MRPL33_uc002rln.1_Missense_Mutation_p.F2L	NM_004891	NP_004882	O75394	RM33_HUMAN	mitochondrial ribosomal protein L33 isoform a	2					translation	mitochondrion|ribosome	structural constituent of ribosome				0	Acute lymphoblastic leukemia(172;0.155)					GGTCACCATGTTCCTCTCCGC	0.652												
RBKS	64080	broad.mit.edu	37	2	28081321	28081321	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:28081321C>T	uc002rlo.1	-	2	218	c.207G>A	c.(205-207)ACG>ACA	p.T69T	RBKS_uc010ezi.1_Silent_p.T2T|RBKS_uc010ymg.1_Silent_p.T69T	NM_022128	NP_071411	Q9H477	RBSK_HUMAN	ribokinase	69					D-ribose metabolic process		ATP binding|ribokinase activity			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)					ACACCATGGACGTCATTGCTC	0.408												
FOSL2	2355	broad.mit.edu	37	2	28631696	28631696	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:28631696G>A	uc002rma.2	+	3	1234	c.425G>A	c.(424-426)CGG>CAG	p.R142Q	FOSL2_uc010ymi.1_Missense_Mutation_p.R103Q	NM_005253	NP_005244	P15408	FOSL2_HUMAN	FOS-like antigen 2	142	Basic motif.				cell death|regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(172;0.155)					GCCAAGTGCCGGAACCGACGC	0.637												
WDR43	23160	broad.mit.edu	37	2	29124900	29124900	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:29124900T>C	uc002rmo.2	+	2	305	c.273T>C	c.(271-273)AGT>AGC	p.S91S		NM_015131	NP_055946	Q15061	WDR43_HUMAN	WD repeat domain 43	91	WD 2.					nucleolus				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TAGGAATGAGTAACCAGACTG	0.338												
ALK	238	broad.mit.edu	37	2	29498087	29498087	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:29498087C>T	uc002rmy.2	-	11	2826	c.1919G>A	c.(1918-1920)GGA>GAA	p.G640E		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	640	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CTTGTCCTCTCCGCTAACTGC	0.493			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome			
LCLAT1	253558	broad.mit.edu	37	2	30756115	30756115	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:30756115G>A	uc002rnj.2	+	4	622	c.413G>A	c.(412-414)CGA>CAA	p.R138Q	LCLAT1_uc010ymp.1_5'UTR|LCLAT1_uc002rnk.1_Missense_Mutation_p.R138Q|LCLAT1_uc002rnl.2_Missense_Mutation_p.R100Q|LCLAT1_uc010ymq.1_Missense_Mutation_p.R100Q	NM_182551	NP_872357	Q6UWP7	LCLT1_HUMAN	lysocardiolipin acyltransferase 1 isoform 1	138					multicellular organismal development|phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity			ovary(2)	2						TGCCTGATGCGATATAGCTAC	0.403												
BIRC6	57448	broad.mit.edu	37	2	32658760	32658760	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:32658760T>C	uc010ezu.2	+	13	3431	c.3297T>C	c.(3295-3297)TGT>TGC	p.C1099C		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	1099					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CTAAAGCTTGTATGGTTGGAC	0.363												
BIRC6	57448	broad.mit.edu	37	2	32664624	32664624	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:32664624T>C	uc010ezu.2	+	16	3814	c.3680T>C	c.(3679-3681)GTG>GCG	p.V1227A		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	1227					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					GTCAAGGCAGTGAATGAAAGA	0.403												
LTBP1	4052	broad.mit.edu	37	2	33586574	33586574	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:33586574A>G	uc002ros.2	+	28	4265	c.4265A>G	c.(4264-4266)AAC>AGC	p.N1422S	LTBP1_uc002rot.2_Missense_Mutation_p.N1096S|LTBP1_uc002rou.2_Missense_Mutation_p.N1095S|LTBP1_uc002rov.2_Missense_Mutation_p.N1042S|LTBP1_uc010ymz.1_Missense_Mutation_p.N1053S|LTBP1_uc010yna.1_Missense_Mutation_p.N1000S|LTBP1_uc010ynb.1_Missense_Mutation_p.N319S	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1421					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GGTGGTGAGAACTATAAAGGT	0.388												
VIT	5212	broad.mit.edu	37	2	36970392	36970392	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:36970392G>A	uc002rpl.2	+	4	489	c.268G>A	c.(268-270)GTA>ATA	p.V90I	VIT_uc002rpk.2_Missense_Mutation_p.V83I|VIT_uc010ynf.1_Missense_Mutation_p.V83I|VIT_uc002rpm.2_Missense_Mutation_p.V83I|VIT_uc010ezv.2_Missense_Mutation_p.V83I|VIT_uc010ezw.2_Missense_Mutation_p.V83I	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	90	LCCL.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				TGGCGCTGCCGTACACAGGTG	0.473												
QPCT	25797	broad.mit.edu	37	2	37594397	37594397	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:37594397A>T	uc002rqg.2	+	4	691	c.569A>T	c.(568-570)GAT>GTT	p.D190V	QPCT_uc002rqh.2_Missense_Mutation_p.D141V	NM_012413	NP_036545	Q16769	QPCT_HUMAN	glutaminyl-peptide cyclotransferase precursor	190					peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|proteolysis	extracellular region	acyltransferase activity|glutaminyl-peptide cyclotransferase activity|peptidase activity|zinc ion binding			central_nervous_system(1)	1		Ovarian(717;0.051)|all_hematologic(82;0.21)				TCCAAGCCAGATTTGTCACTC	0.383												
FAM82A1	151393	broad.mit.edu	37	2	38231304	38231304	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:38231304A>G	uc002rql.2	+	10	1247	c.1124A>G	c.(1123-1125)CAG>CGG	p.Q375R	FAM82A1_uc002rqn.1_Missense_Mutation_p.Q553R|FAM82A1_uc002rqm.2_Missense_Mutation_p.Q230R	NM_144713	NP_653314	Q96LZ7	RMD2_HUMAN	family with sequence similarity 82, member A1	375						cytoplasm|integral to membrane|microtubule|spindle pole	binding			ovary(1)	1						GAGGAAAACCAGAATGCTTTG	0.353												
ATL2	64225	broad.mit.edu	37	2	38525536	38525536	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:38525536T>C	uc002rqq.2	-	12	1412	c.1382A>G	c.(1381-1383)AAG>AGG	p.K461R	ATL2_uc010ynm.1_Missense_Mutation_p.K443R|ATL2_uc010ynn.1_Missense_Mutation_p.K443R|ATL2_uc010yno.1_Missense_Mutation_p.K290R|ATL2_uc002rqs.2_Missense_Mutation_p.K461R|ATL2_uc002rqr.2_Missense_Mutation_p.K290R	NM_001135673	NP_001129145	Q8NHH9	ATLA2_HUMAN	atlastin GTPase 2 isoform 2	461	Cytoplasmic.				endoplasmic reticulum organization|Golgi organization|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	GTP binding|GTPase activity|identical protein binding			ovary(1)|kidney(1)|skin(1)	3						ATCATTGTGCTTTATAAAATT	0.413												
SOS1	6654	broad.mit.edu	37	2	39237753	39237753	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:39237753T>C	uc002rrk.3	-	15	2523	c.2482A>G	c.(2482-2484)ACC>GCC	p.T828A	SOS1_uc002rrj.3_Missense_Mutation_p.T442A	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	828	Ras-GEF.				apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				AGGTTGGTGGTATGTCGAATC	0.333									Noonan_syndrome			
COX7A2L	9167	broad.mit.edu	37	2	42578469	42578469	+	Nonsense_Mutation	SNP	G	G	A	rs61754513		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:42578469G>A	uc002rsk.2	-	3	290	c.235C>T	c.(235-237)CGA>TGA	p.R79*	COX7A2L_uc002rsl.2_RNA	NM_004718	NP_004709	O14548	COX7R_HUMAN	cytochrome c oxidase subunit VIIa polypeptide 2	79					respiratory electron transport chain	mitochondrial respiratory chain	cytochrome-c oxidase activity|electron carrier activity				0						GGCAGGCCTCGTTTCAGGTAG	0.468												
LRPPRC	10128	broad.mit.edu	37	2	44187750	44187750	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:44187750A>G	uc002rtr.2	-	13	1570	c.1512T>C	c.(1510-1512)AGT>AGC	p.S504S	LRPPRC_uc010yob.1_Silent_p.S404S	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	504					mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AAAACATATCACTATCAGACA	0.343												
SIX2	10736	broad.mit.edu	37	2	45236051	45236051	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:45236051A>G	uc002ruo.2	-	1	492	c.199T>C	c.(199-201)TAC>CAC	p.Y67H	SIX2_uc002rup.2_Missense_Mutation_p.Y67H	NM_016932	NP_058628	Q9NPC8	SIX2_HUMAN	SIX homeobox 2	67						nucleus	sequence-specific DNA binding transcription factor activity			pancreas(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AGGATCTTGTAGAGCTCGCGG	0.632												
MSH6	2956	broad.mit.edu	37	2	48027122	48027122	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:48027122A>T	uc002rwd.3	+	4	2152	c.2000A>T	c.(1999-2001)GAT>GTT	p.D667V	MSH6_uc002rwc.2_Missense_Mutation_p.D667V|MSH6_uc010fbj.2_Missense_Mutation_p.D365V|MSH6_uc010yoi.1_Missense_Mutation_p.D537V|MSH6_uc010yoj.1_Missense_Mutation_p.D365V	NM_000179	NP_000170	P52701	MSH6_HUMAN	mutS homolog 6	667					determination of adult lifespan|DNA damage response, signal transduction resulting in induction of apoptosis|isotype switching|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|response to UV|somatic hypermutation of immunoglobulin genes	MutSalpha complex	ATP binding|DNA-dependent ATPase activity|protein binding			large_intestine(53)|central_nervous_system(28)|endometrium(28)|stomach(22)|haematopoietic_and_lymphoid_tissue(9)|lung(7)|skin(6)|urinary_tract(5)|breast(5)|ovary(3)|thyroid(1)|upper_aerodigestive_tract(1)	168		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TCAGAGTCTGATTCCATTGGG	0.438			Mis|N|F|S		colorectal	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome			
MSH6	2956	broad.mit.edu	37	2	48027725	48027725	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:48027725T>C	uc002rwd.3	+	4	2755	c.2603T>C	c.(2602-2604)ATG>ACG	p.M868T	MSH6_uc002rwc.2_Missense_Mutation_p.M868T|MSH6_uc010fbj.2_Missense_Mutation_p.M566T|MSH6_uc010yoi.1_Missense_Mutation_p.M738T|MSH6_uc010yoj.1_Missense_Mutation_p.M566T	NM_000179	NP_000170	P52701	MSH6_HUMAN	mutS homolog 6	868					determination of adult lifespan|DNA damage response, signal transduction resulting in induction of apoptosis|isotype switching|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|response to UV|somatic hypermutation of immunoglobulin genes	MutSalpha complex	ATP binding|DNA-dependent ATPase activity|protein binding			large_intestine(53)|central_nervous_system(28)|endometrium(28)|stomach(22)|haematopoietic_and_lymphoid_tissue(9)|lung(7)|skin(6)|urinary_tract(5)|breast(5)|ovary(3)|thyroid(1)|upper_aerodigestive_tract(1)	168		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TTCAAAGTAATGTGTAAAATT	0.378			Mis|N|F|S		colorectal	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome			
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808756	48808756	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:48808756T>C	uc010yol.1	+	1	1031	c.984T>C	c.(982-984)TGT>TGC	p.C328C	STON1_uc002rwo.3_Silent_p.C328C|STON1_uc010fbm.2_Silent_p.C328C|STON1-GTF2A1L_uc002rwp.1_Silent_p.C328C|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Silent_p.C328C	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	328					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ATCCATATTGTAGGCTTTCTG	0.363												
FSHR	2492	broad.mit.edu	37	2	49190230	49190230	+	Missense_Mutation	SNP	A	A	G	rs113877695		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:49190230A>G	uc002rww.2	-	10	1804	c.1730T>C	c.(1729-1731)CTC>CCC	p.L577P	FSHR_uc002rwx.2_Missense_Mutation_p.L515P|FSHR_uc010fbn.2_Missense_Mutation_p.L551P	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	577	Helical; Name=6; (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	AGTGAAGATGAGCATGGCCAT	0.522									Gonadal_Dysgenesis_46_XX			
NRXN1	9378	broad.mit.edu	37	2	50464031	50464031	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:50464031G>A	uc010fbp.2	-	2	1144	c.337C>T	c.(337-339)CGA>TGA	p.R113*	NRXN1_uc002rxb.3_Nonsense_Mutation_p.R820*|NRXN1_uc010fbq.2_Nonsense_Mutation_p.R1188*|NRXN1_uc002rxe.3_Nonsense_Mutation_p.R1148*|NRXN1_uc002rxc.1_RNA	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	113	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CTGTCTGCTCGTGTACTGGGT	0.473												
NRXN1	9378	broad.mit.edu	37	2	51254957	51254957	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:51254957C>T	uc010fbq.2	-	2	1932	c.455G>A	c.(454-456)GGC>GAC	p.G152D	NRXN1_uc002rxe.3_Missense_Mutation_p.G152D|NRXN1_uc002rxd.1_Missense_Mutation_p.G152D	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GACGAAAAGGCCGCTGAACAC	0.667												
PSME4	23198	broad.mit.edu	37	2	54125072	54125072	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:54125072A>G	uc002rxp.2	-	31	3597	c.3541T>C	c.(3541-3543)TTG>CTG	p.L1181L	PSME4_uc010yop.1_Silent_p.L1067L|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Silent_p.L556L|PSME4_uc010fbv.1_Silent_p.L325L	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	1181	HEAT 3.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			CGAAGAGGCAACACTCGGTCA	0.413												
SPTBN1	6711	broad.mit.edu	37	2	54873365	54873365	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:54873365G>A	uc002rxu.2	+	23	4868	c.4619G>A	c.(4618-4620)CGC>CAC	p.R1540H	SPTBN1_uc002rxx.2_Missense_Mutation_p.R1527H	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	1540	Spectrin 12.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			CACCAGCCTCGCATTGACGAC	0.552												
C2orf63	130162	broad.mit.edu	37	2	55449384	55449384	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:55449384T>C	uc002ryi.2	-	3	510	c.164A>G	c.(163-165)AAT>AGT	p.N55S	C2orf63_uc002ryh.2_5'UTR|C2orf63_uc002ryj.2_Intron	NM_152385	NP_689598	Q8NHS4	CB063_HUMAN	hypothetical protein LOC130162 isoform 1	55							binding			ovary(2)|central_nervous_system(1)	3			LUSC - Lung squamous cell carcinoma(58;0.179)|Lung(47;0.189)			ATCAAAAACATTTCGGTATAT	0.343												
MTIF2	4528	broad.mit.edu	37	2	55470795	55470795	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:55470795G>A	uc002ryn.2	-	13	2058	c.1321C>T	c.(1321-1323)CGT>TGT	p.R441C	MTIF2_uc010yox.1_Missense_Mutation_p.R110C|MTIF2_uc002ryo.2_Missense_Mutation_p.R441C	NM_001005369	NP_001005369	P46199	IF2M_HUMAN	mitochondrial translational initiation factor 2	441					regulation of translational initiation	mitochondrion	GTP binding|GTPase activity|ribosomal small subunit binding|translation initiation factor activity			ovary(1)	1						ACAACTTCACGTGCCCTTGGC	0.373												
CCDC88A	55704	broad.mit.edu	37	2	55573429	55573429	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:55573429T>C	uc002ryv.2	-	10	1765	c.923A>G	c.(922-924)TAC>TGC	p.Y308C	CCDC88A_uc010yoz.1_Missense_Mutation_p.Y308C|CCDC88A_uc010ypa.1_Missense_Mutation_p.Y308C|CCDC88A_uc010ypb.1_Missense_Mutation_p.Y210C	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	308	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						TTCATCTCGGTACATTCTGGC	0.318												
PAPOLG	64895	broad.mit.edu	37	2	61019297	61019297	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:61019297G>T	uc002sai.2	+	17	1783	c.1552G>T	c.(1552-1554)GGA>TGA	p.G518*	PAPOLG_uc002saj.2_Nonsense_Mutation_p.G207*|PAPOLG_uc002sak.2_Nonsense_Mutation_p.G53*|PAPOLG_uc010fch.2_Nonsense_Mutation_p.G207*	NM_022894	NP_075045	Q9BWT3	PAPOG_HUMAN	poly(A) polymerase gamma	518					mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(2;0.0797)		LUSC - Lung squamous cell carcinoma(5;1.19e-07)|Lung(5;2.86e-06)|Epithelial(17;0.0768)			AAGCTCGGGCGGACTTCAATC	0.408												
COMMD1	150684	broad.mit.edu	37	2	62228080	62228080	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:62228080T>C	uc002sbp.2	+	2	436	c.425T>C	c.(424-426)GTT>GCT	p.V142A	COMMD1_uc002sbq.1_RNA	NM_152516	NP_689729	Q8N668	COMD1_HUMAN	MURR1	142	COMM.				copper ion homeostasis|negative regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|regulation of proteasomal ubiquitin-dependent protein catabolic process	cell junction|Cul2-RING ubiquitin ligase complex|cytoplasm|nucleolus	copper ion binding|protein homodimerization activity			ovary(1)	1	Lung NSC(7;0.035)|all_lung(7;0.0691)		LUSC - Lung squamous cell carcinoma(7;4.73e-07)|Epithelial(17;0.0216)|all cancers(80;0.0934)			CACACACCTGTTGCCATTATA	0.448												
EHBP1	23301	broad.mit.edu	37	2	62991483	62991483	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:62991483T>C	uc002sby.2	+	4	727	c.245T>C	c.(244-246)GTA>GCA	p.V82A	EHBP1_uc010fcp.2_Missense_Mutation_p.V82A|EHBP1_uc010fcq.1_Missense_Mutation_p.V82A|EHBP1_uc002sbx.2_Missense_Mutation_p.V82A|EHBP1_uc002sbz.2_Missense_Mutation_p.V82A|EHBP1_uc002scb.2_Missense_Mutation_p.V82A|EHBP1_uc002sca.2_Missense_Mutation_p.V82A	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	82						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			GAAATCACTGTAACACTTTTT	0.343									Hereditary_Prostate_Cancer			
EHBP1	23301	broad.mit.edu	37	2	63092036	63092036	+	Missense_Mutation	SNP	A	A	C	rs139208941		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:63092036A>C	uc002sby.2	+	10	1515	c.1033A>C	c.(1033-1035)ATA>CTA	p.I345L	EHBP1_uc010fcp.2_Missense_Mutation_p.I310L|EHBP1_uc002sbx.2_Missense_Mutation_p.I310L|EHBP1_uc002sbz.2_Missense_Mutation_p.I310L|EHBP1_uc002scb.2_Missense_Mutation_p.I310L	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	345						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			AAGAAAAAATATAAGACCTGT	0.383									Hereditary_Prostate_Cancer			
EHBP1	23301	broad.mit.edu	37	2	63176256	63176256	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:63176256A>G	uc002sby.2	+	14	2862	c.2380A>G	c.(2380-2382)ACC>GCC	p.T794A	EHBP1_uc010fcp.2_Missense_Mutation_p.T759A|EHBP1_uc002sbz.2_Missense_Mutation_p.T759A|EHBP1_uc002scb.2_Missense_Mutation_p.T759A	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	794						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			TGCTGATAGAACCACTTTAAA	0.348									Hereditary_Prostate_Cancer			
C2orf86	51057	broad.mit.edu	37	2	63631685	63631685	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:63631685C>T	uc002sch.2	-	10	1379	c.933G>A	c.(931-933)GAG>GAA	p.E311E	C2orf86_uc002sce.2_RNA|C2orf86_uc002scf.2_Silent_p.E152E|C2orf86_uc010ypu.1_RNA|C2orf86_uc002scg.2_Silent_p.E119E|C2orf86_uc002sci.1_Silent_p.E287E|C2orf86_uc010fcr.1_Silent_p.E201E	NM_015910	NP_056994	O95876	FRITZ_HUMAN	hypothetical protein LOC51057 isoform 2	311					cilium morphogenesis|regulation of embryonic cell shape|regulation of protein localization|septin cytoskeleton organization	cilium axoneme|cytoplasm|cytoskeleton|plasma membrane					0						CAGCCATGGGCTCTTTGTCTA	0.493												
MDH1	4190	broad.mit.edu	37	2	63832446	63832446	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:63832446G>T	uc002scj.1	+	7	764	c.708G>T	c.(706-708)AAG>AAT	p.K236N	MDH1_uc010ypv.1_Missense_Mutation_p.K254N|MDH1_uc010ypw.1_Missense_Mutation_p.K141N	NM_005917	NP_005908	P40925	MDHC_HUMAN	cytosolic malate dehydrogenase	236					gluconeogenesis|tricarboxylic acid cycle	centrosome|cytosol	L-malate dehydrogenase activity|malic enzyme activity			kidney(2)	2					NADH(DB00157)	CTGTCATCAAGGCTCGAAAAC	0.493												
AFTPH	54812	broad.mit.edu	37	2	64779360	64779360	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:64779360C>T	uc002sdc.2	+	1	784	c.752C>T	c.(751-753)GCA>GTA	p.A251V	AFTPH_uc002scz.2_Missense_Mutation_p.A251V|AFTPH_uc002sda.2_Missense_Mutation_p.A251V|AFTPH_uc002sdb.2_Missense_Mutation_p.A251V	NM_203437	NP_982261	Q6ULP2	AFTIN_HUMAN	aftiphilin protein isoform a	251					protein transport	AP-1 adaptor complex|cytosol|nucleus	clathrin binding			ovary(2)	2						ATAGAATGTGCAGTTTTAAAT	0.343												
ACTR2	10097	broad.mit.edu	37	2	65482703	65482703	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:65482703T>C	uc002sdq.2	+	6	825	c.610T>C	c.(610-612)TTC>CTC	p.F204L	ACTR2_uc010yqf.1_Missense_Mutation_p.F149L|ACTR2_uc002sdp.2_Missense_Mutation_p.F209L|ACTR2_uc010yqg.1_Missense_Mutation_p.F152L	NM_005722	NP_005713	P61160	ARP2_HUMAN	actin-related protein 2 isoform b	204					cellular component movement	Arp2/3 protein complex|cell projection|cytoplasm	actin binding|ATP binding				0						AGGATACGCCTTCAACCACTC	0.383												
WDR92	116143	broad.mit.edu	37	2	68352436	68352436	+	RNA	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:68352436T>C	uc002sed.1	-	9		c.1105A>G						Q96MX6	WDR92_HUMAN	Homo sapiens cDNA FLJ31741 fis, clone NT2RI2007148.						apoptosis|histone lysine methylation		methylated histone residue binding				0						CCATCGACAGTGAGCCCTTGG	0.493												
FAM136A	84908	broad.mit.edu	37	2	70528094	70528094	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:70528094T>C	uc002sgq.3	-	2	183	c.106A>G	c.(106-108)AGC>GGC	p.S36G	FAM136A_uc010fdp.2_RNA	NM_032822	NP_116211	Q96C01	F136A_HUMAN	hypothetical protein LOC84908	36						mitochondrion	protein binding				0						CAGCTGGCGCTGCACCGGAAC	0.582												
ADD2	119	broad.mit.edu	37	2	70915174	70915174	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:70915174C>A	uc002sgz.2	-	9	1395	c.930G>T	c.(928-930)CAG>CAT	p.Q310H	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.Q310H|ADD2_uc002sha.2_Intron|ADD2_uc002sgx.2_Missense_Mutation_p.Q310H|ADD2_uc010fdt.1_Missense_Mutation_p.Q310H|ADD2_uc002shc.1_Missense_Mutation_p.Q310H|ADD2_uc002shd.1_Intron|ADD2_uc010fdu.1_Missense_Mutation_p.Q326H	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	310					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CACATGCAGCCTGCAGGTGGA	0.527												
ATP6V1B1	525	broad.mit.edu	37	2	71163109	71163109	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:71163109C>T	uc002shj.2	+	1	112	c.25C>T	c.(25-27)CCT>TCT	p.P9S	ATP6V1B1_uc002shi.1_Missense_Mutation_p.P9S|ATP6V1B1_uc010fdv.2_Missense_Mutation_p.P9S|ATP6V1B1_uc010fdw.2_RNA	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	9					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						AGACAGCAGGCCTGGGGGGCT	0.627												
ATP6V1B1	525	broad.mit.edu	37	2	71187158	71187158	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:71187158C>A	uc002shj.2	+	6	622	c.535C>A	c.(535-537)CGC>AGC	p.R179S	ATP6V1B1_uc002shi.1_Missense_Mutation_p.R179S|ATP6V1B1_uc010fdv.2_Missense_Mutation_p.R179S|ATP6V1B1_uc010fdw.2_RNA|ATP6V1B1_uc010fdx.2_Missense_Mutation_p.R137S	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	179					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						CAGCATTGCCCGCGGCCAGAA	0.627												
ZNF638	27332	broad.mit.edu	37	2	71576963	71576963	+	Missense_Mutation	SNP	G	G	A	rs141176451		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:71576963G>A	uc002shx.2	+	2	1198	c.879G>A	c.(877-879)ATG>ATA	p.M293I	ZNF638_uc010fec.2_Missense_Mutation_p.M399I|ZNF638_uc010yqw.1_Intron|ZNF638_uc002shw.2_Missense_Mutation_p.M293I|ZNF638_uc002shy.2_Missense_Mutation_p.M293I|ZNF638_uc002shz.2_Missense_Mutation_p.M293I|ZNF638_uc002sia.2_Missense_Mutation_p.M293I|ZNF638_uc002sib.1_Missense_Mutation_p.M293I	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	293					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						GAACCAAGATGTCAGGCTTAC	0.438												
SFXN5	94097	broad.mit.edu	37	2	73195648	73195648	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:73195648C>T	uc002siq.2	-	12	887	c.756G>A	c.(754-756)ACG>ACA	p.T252T	SFXN5_uc002sio.2_Silent_p.T144T|SFXN5_uc010yrc.1_Silent_p.T101T|SFXN5_uc002sip.2_RNA|SFXN5_uc010fet.2_Intron|SFXN5_uc010fer.2_RNA|SFXN5_uc010feq.2_Silent_p.T34T|SFXN5_uc010fes.2_Silent_p.T34T	NM_144579	NP_653180	Q8TD22	SFXN5_HUMAN	sideroflexin 5	252					iron ion homeostasis	integral to membrane	cation transmembrane transporter activity			ovary(1)	1						GCGTCAGCGCCGTCTCCAGCA	0.647												
C2orf7	84279	broad.mit.edu	37	2	73455993	73455993	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:73455993C>T	uc002siy.2	-	4	444	c.376G>A	c.(376-378)GTG>ATG	p.V126M		NM_032319	NP_115695	Q9BSG0	PADC1_HUMAN	chromosome 2 open reading frame 7 precursor	126	PA.					extracellular region					0						ATCATCTCCACGTAGAAGCTG	0.617												
CCT7	10574	broad.mit.edu	37	2	73479961	73479961	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:73479961G>A	uc002siz.2	+	12	1706	c.1604G>A	c.(1603-1605)CGG>CAG	p.R535Q	CCT7_uc002sja.2_Missense_Mutation_p.R331Q|CCT7_uc010yrf.1_Missense_Mutation_p.R491Q|CCT7_uc010feu.2_Missense_Mutation_p.R493Q|CCT7_uc010yrg.1_Missense_Mutation_p.R435Q|CCT7_uc010yrh.1_Missense_Mutation_p.R407Q|CCT7_uc010yri.1_Missense_Mutation_p.R448Q	NM_006429	NP_006420	Q99832	TCPH_HUMAN	chaperonin containing TCP1, subunit 7 isoform a	535					'de novo' posttranslational protein folding		ATP binding|unfolded protein binding				0						GCAGCAGGCCGGGGCCGTGGT	0.627												
ALMS1	7840	broad.mit.edu	37	2	73651914	73651914	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:73651914A>G	uc002sje.1	+	6	1235	c.1124A>G	c.(1123-1125)GAC>GGC	p.D375G	ALMS1_uc002sjf.1_Missense_Mutation_p.D332G	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	374					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						ACTTCATTTGACATAACTGAT	0.373												
MTHFD2	10797	broad.mit.edu	37	2	74438395	74438395	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:74438395C>T	uc002skk.2	+	6	819	c.740C>T	c.(739-741)GCA>GTA	p.A247V	MTHFD2_uc002skj.2_Missense_Mutation_p.A145V|MTHFD2_uc010yro.1_Missense_Mutation_p.A145V|MTHFD2_uc010ffb.2_Missense_Mutation_p.A206V|MTHFD2_uc010yrp.1_Missense_Mutation_p.A83V	NM_006636	NP_006627	P13995	MTDC_HUMAN	methylenetetrahydrofolate dehydrogenase 2	247					folic acid-containing compound biosynthetic process|one-carbon metabolic process|tetrahydrofolate metabolic process	mitochondrion	magnesium ion binding|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NAD+) activity|methylenetetrahydrofolate dehydrogenase (NADP+) activity|phosphate binding|protein binding				0					NADH(DB00157)|Tetrahydrofolic acid(DB00116)	ACAATTCTTGCAGATATTGTA	0.408												
SLC4A5	57835	broad.mit.edu	37	2	74474176	74474176	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:74474176G>A	uc002sko.1	-	14	2048	c.2046C>T	c.(2044-2046)GTC>GTT	p.V682V	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Silent_p.V682V|SLC4A5_uc010ffc.1_Silent_p.V682V|SLC4A5_uc002skp.1_Silent_p.V618V|SLC4A5_uc002sks.1_Silent_p.V682V	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	682	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						TGTCAGGGGCGACACACTCGC	0.537												
DCTN1	1639	broad.mit.edu	37	2	74597614	74597614	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:74597614C>T	uc002skx.2	-	11	1417	c.1106G>A	c.(1105-1107)CGC>CAC	p.R369H	DCTN1_uc002skv.2_Missense_Mutation_p.R235H|DCTN1_uc002sku.2_Missense_Mutation_p.R235H|DCTN1_uc002skw.1_Missense_Mutation_p.R345H|DCTN1_uc010ffd.2_Missense_Mutation_p.R349H|DCTN1_uc002sky.2_Missense_Mutation_p.R332H	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	369	Potential.				cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						ATCCTTCAGGCGGGCATTCTG	0.522												
RTKN	6242	broad.mit.edu	37	2	74654556	74654556	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:74654556T>C	uc002sle.2	-	10	1367	c.1250A>G	c.(1249-1251)GAC>GGC	p.D417G	RTKN_uc002slc.2_Missense_Mutation_p.D404G|RTKN_uc002sld.2_Missense_Mutation_p.D367G	NM_001015055	NP_001015055	Q9BST9	RTKN_HUMAN	rhotekin isoform a	417					apoptosis|regulation of anti-apoptosis|Rho protein signal transduction	intracellular	GTP binding|GTP-Rho binding|GTPase inhibitor activity			skin(1)	1						CTTACTCATGTCAAAGAAAAG	0.473												
MOGS	7841	broad.mit.edu	37	2	74688480	74688480	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:74688480G>A	uc010ffj.2	-	4	2599	c.2436C>T	c.(2434-2436)CGC>CGT	p.R812R	MOGS_uc010ffh.2_Silent_p.R537R|MOGS_uc010yrt.1_Silent_p.R693R|MOGS_uc010ffi.2_Silent_p.R706R	NM_006302	NP_006293	Q13724	MOGS_HUMAN	mannosyl-oligosaccharide glucosidase isoform 1	812	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|membrane fraction	mannosyl-oligosaccharide glucosidase activity				0						CTCGCCCATCGCGGTCACTGT	0.617												
MOGS	7841	broad.mit.edu	37	2	74691666	74691666	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:74691666T>G	uc010ffj.2	-	2	699	c.536A>C	c.(535-537)CAG>CCG	p.Q179P	MOGS_uc010ffh.2_5'Flank|MOGS_uc010yrt.1_Missense_Mutation_p.Q60P|MOGS_uc010ffi.2_Missense_Mutation_p.Q73P|MOGS_uc010yru.1_Intron	NM_006302	NP_006293	Q13724	MOGS_HUMAN	mannosyl-oligosaccharide glucosidase isoform 1	179	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|membrane fraction	mannosyl-oligosaccharide glucosidase activity				0						CCCTCCGTGCTGACCCCCAGG	0.617												
AUP1	550	broad.mit.edu	37	2	74754151	74754151	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:74754151T>A	uc010yrx.1	-	10	1410	c.1284A>T	c.(1282-1284)ACA>ACT	p.T428T	DQX1_uc010yrw.1_5'Flank|AUP1_uc002sme.2_Silent_p.T104T|AUP1_uc002smf.2_Silent_p.T371T|AUP1_uc002smg.2_RNA|AUP1_uc002smh.2_Silent_p.T280T|HTRA2_uc002smi.1_5'Flank|HTRA2_uc002smj.1_5'Flank|HTRA2_uc002smk.1_5'Flank|HTRA2_uc002sml.1_5'Flank|HTRA2_uc002smm.1_5'Flank|HTRA2_uc002smn.1_5'Flank			Q9Y679	AUP1_HUMAN	SubName: Full=cDNA FLJ57204, highly similar to Homo sapiens ancient ubiquitous protein 1 (AUP1), transcript variant 2, mRNA;	437	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nucleus	protein binding				0						ATGTTAGGGCTGTTGGCTGAG	0.547												
TACR1	6869	broad.mit.edu	37	2	75425766	75425766	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:75425766A>G	uc002sng.2	-	1	880	c.295T>C	c.(295-297)TAC>CAC	p.Y99H	TACR1_uc002snh.2_Missense_Mutation_p.Y99H	NM_001058	NP_001049	P25103	NK1R_HUMAN	tachykinin receptor 1 isoform long	99	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|detection of abiotic stimulus|mechanosensory behavior	integral to plasma membrane	protein binding			ovary(1)	1					Aprepitant(DB00673)|Ketamine(DB01221)|Vapreotide(DB04894)	AGGCCGTAGTACCATTCGTTG	0.512												
LRRTM4	80059	broad.mit.edu	37	2	77745646	77745646	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:77745646T>C	uc002snr.2	-	3	1764	c.1349A>G	c.(1348-1350)TAC>TGC	p.Y450C	LRRTM4_uc002snq.2_Missense_Mutation_p.Y450C|LRRTM4_uc002sns.2_Missense_Mutation_p.Y450C|LRRTM4_uc002snt.2_Missense_Mutation_p.Y451C	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	450	Cytoplasmic (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		GCTGGCTGGGTAGCGTTTCCA	0.463												
CTNNA2	1496	broad.mit.edu	37	2	80816514	80816514	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:80816514A>C	uc010ysh.1	+	14	2098	c.2093A>C	c.(2092-2094)GAT>GCT	p.D698A	CTNNA2_uc010yse.1_Missense_Mutation_p.D698A|CTNNA2_uc010ysf.1_Missense_Mutation_p.D698A|CTNNA2_uc010ysg.1_Missense_Mutation_p.D698A|CTNNA2_uc010ysi.1_Missense_Mutation_p.D330A|CTNNA2_uc010ysj.1_Missense_Mutation_p.D27A	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	698					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						AGCAAGCTGGATGCAGAAGTG	0.488												
RETSAT	54884	broad.mit.edu	37	2	85571218	85571218	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:85571218C>A	uc002spd.2	-	9	1628	c.1437G>T	c.(1435-1437)AAG>AAT	p.K479N	RETSAT_uc010fge.2_Intron|RETSAT_uc010ysm.1_Missense_Mutation_p.K418N|RETSAT_uc010fgf.2_Missense_Mutation_p.K270N	NM_017750	NP_060220	Q6NUM9	RETST_HUMAN	all-trans-13,14-dihydroretinol saturase	479					retinol metabolic process	endoplasmic reticulum membrane|nuclear outer membrane	all-trans-retinol 13,14-reductase activity|electron carrier activity			ovary(2)	2					Vitamin A(DB00162)	CCCGCTTTCCCTTCAGCTCCG	0.542												
RETSAT	54884	broad.mit.edu	37	2	85571464	85571464	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:85571464G>A	uc002spd.2	-	8	1455	c.1264C>T	c.(1264-1266)CGC>TGC	p.R422C	RETSAT_uc010fge.2_RNA|RETSAT_uc010ysm.1_Missense_Mutation_p.R361C|RETSAT_uc010fgf.2_Missense_Mutation_p.R213C	NM_017750	NP_060220	Q6NUM9	RETST_HUMAN	all-trans-13,14-dihydroretinol saturase	422					retinol metabolic process	endoplasmic reticulum membrane|nuclear outer membrane	all-trans-retinol 13,14-reductase activity|electron carrier activity			ovary(2)	2					Vitamin A(DB00162)	GAGACGTAGCGCTCCATCCTG	0.557												
SH2D6	284948	broad.mit.edu	37	2	85662598	85662598	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:85662598T>C	uc002spq.2	+	2	392	c.231T>C	c.(229-231)AGT>AGC	p.S77S	SH2D6_uc002spo.2_Intron|SH2D6_uc002spp.2_RNA	NM_198482	NP_940884	Q7Z4S9	SH2D6_HUMAN	SH2 domain containing 6	77	SH2.									central_nervous_system(1)	1						CTGTTGAGAGTGCCCTGCTCC	0.582												
PTCD3	55037	broad.mit.edu	37	2	86352118	86352118	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:86352118A>G	uc002sqw.2	+	10	783	c.717A>G	c.(715-717)CGA>CGG	p.R239R	PTCD3_uc010ytc.1_RNA|PTCD3_uc002sqx.1_5'UTR	NM_017952	NP_060422	Q96EY7	PTCD3_HUMAN	pentatricopeptide repeat domain 3 precursor	239						mitochondrion	protein binding			ovary(1)	1						TTGTGTCTAGAGCAAAAAACA	0.279												
REEP1	65055	broad.mit.edu	37	2	86479109	86479109	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:86479109C>T	uc002srh.3	-	5	532	c.388G>A	c.(388-390)GCC>ACC	p.A130T	REEP1_uc010ytg.1_Missense_Mutation_p.A109T|REEP1_uc010yth.1_Missense_Mutation_p.A103T|REEP1_uc010yti.1_Intron	NM_022912	NP_075063	Q9H902	REEP1_HUMAN	receptor accessory protein 1 isoform 2	130					cell death|protein insertion into membrane	integral to membrane|mitochondrial membrane	olfactory receptor binding				0						GCCGCTGTGGCGGCCACGTTC	0.537												
C2orf51	200523	broad.mit.edu	37	2	88828868	88828868	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:88828868A>G	uc002stb.1	+	4	561	c.419A>G	c.(418-420)CAC>CGC	p.H140R		NM_152670	NP_689883	Q96LM6	TSC21_HUMAN	chromosome 2 open reading frame 51	140						nucleus				skin(1)	1						GATCCCAAACACCAGCCTGCT	0.572												
EIF2AK3	9451	broad.mit.edu	37	2	88885403	88885403	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:88885403T>C	uc002stc.3	-	9	1808	c.1606A>G	c.(1606-1608)ACA>GCA	p.T536A		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	536	Cytoplasmic (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						ATAAACGTTGTTGCTATGATA	0.343												
TEKT4	150483	broad.mit.edu	37	2	95537557	95537557	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:95537557C>T	uc002stw.1	+	1	326	c.233C>T	c.(232-234)GCG>GTG	p.A78V	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	78					cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						GAGACCCAGGCGCTGGCGCAG	0.677												
MAL	4118	broad.mit.edu	37	2	95719178	95719178	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:95719178T>C	uc002stx.1	+	4	499	c.440T>C	c.(439-441)TTA>TCA	p.L147S	MAL_uc002sty.1_Missense_Mutation_p.L91S|MAL_uc002stz.1_Missense_Mutation_p.L105S|MAL_uc002sua.1_Missense_Mutation_p.L49S	NM_002371	NP_002362	P21145	MAL_HUMAN	T-lymphocyte maturation-associated protein	147	Helical; (Potential).|MARVEL.				apical protein localization|cell differentiation|central nervous system development|induction of apoptosis|membrane raft polarization|myelination	apical plasma membrane|endoplasmic reticulum|endosome|integral to plasma membrane|membrane raft	apoptotic protease activator activity|channel activity|lipid binding|structural constituent of myelin sheath				0				STAD - Stomach adenocarcinoma(1183;0.18)		GTGTTCTCTTTAATCAGATGG	0.478												
ZNF2	7549	broad.mit.edu	37	2	95847341	95847341	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:95847341A>G	uc002suf.2	+	6	1227	c.765A>G	c.(763-765)AAA>AAG	p.K255K	ZNF2_uc002sug.2_Silent_p.K213K|ZNF2_uc010yue.1_Silent_p.K218K|ZNF2_uc010fhs.2_Silent_p.K176K	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	255					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		CTGGAGAGAAACCCTTTCAGT	0.488												
ARID5A	10865	broad.mit.edu	37	2	97216987	97216987	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:97216987G>A	uc002swe.2	+	7	822	c.722G>A	c.(721-723)CGG>CAG	p.R241Q	ARID5A_uc010yuq.1_Missense_Mutation_p.R189Q|ARID5A_uc002swf.2_Missense_Mutation_p.R77Q|ARID5A_uc002swg.2_Missense_Mutation_p.R189Q	NM_212481	NP_997646	Q03989	ARI5A_HUMAN	AT rich interactive domain 5A	241					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding				0						GCCTACAAGCGGCTCCTATCC	0.612												
LMAN2L	81562	broad.mit.edu	37	2	97377619	97377619	+	Silent	SNP	G	G	A	rs143337559	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:97377619G>A	uc002swu.2	-	5	687	c.651C>T	c.(649-651)TAC>TAT	p.Y217Y	LMAN2L_uc002swv.2_Silent_p.Y228Y|LMAN2L_uc010yut.1_Silent_p.Y83Y|LMAN2L_uc010yuu.1_Silent_p.Y81Y|LMAN2L_uc010yuv.1_Silent_p.Y70Y|LMAN2L_uc010yuw.1_Silent_p.Y72Y|LMAN2L_uc002sww.2_Silent_p.Y70Y|LMAN2L_uc010yux.1_Silent_p.Y72Y	NM_030805	NP_110432	Q9H0V9	LMA2L_HUMAN	lectin, mannose-binding 2-like isoform 2	217	L-type lectin-like.|Lumenal (Potential).				ER to Golgi vesicle-mediated transport|protein folding|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle|Golgi membrane|integral to membrane	mannose binding|metal ion binding				0						GCCTCTTGACGTAGCGAATCA	0.552												
CNNM4	26504	broad.mit.edu	37	2	97427380	97427380	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:97427380G>A	uc002swx.2	+	1	742	c.644G>A	c.(643-645)CGC>CAC	p.R215H		NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	215	DUF21.				biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						ATGGAGCTGCGCATCGTGCAG	0.587												
SEMA4C	54910	broad.mit.edu	37	2	97530013	97530013	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:97530013G>A	uc002sxh.3	-	10	1229	c.1069C>T	c.(1069-1071)CGC>TGC	p.R357C	SEMA4C_uc002sxf.3_5'Flank|SEMA4C_uc002sxe.2_5'Flank|SEMA4C_uc002sxg.3_Missense_Mutation_p.R410C	NM_017789	NP_060259	Q9C0C4	SEM4C_HUMAN	semaphorin 4C precursor	357	Extracellular (Potential).|Dominant negative effect on myogenic differentiation (By similarity).|Sema.				muscle cell differentiation|nervous system development|positive regulation of stress-activated MAPK cascade	cell junction|integral to membrane|postsynaptic density|postsynaptic membrane|synaptic vesicle membrane	receptor activity			skin(2)	2						TCAGTGTAGCGGTCCCACTTC	0.607												
ACTR1B	10120	broad.mit.edu	37	2	98275421	98275421	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:98275421G>A	uc002syb.2	-	5	569	c.361C>T	c.(361-363)CGG>TGG	p.R121W		NM_005735	NP_005726	P42025	ACTY_HUMAN	ARP1 actin-related protein 1 homolog B,	121						centrosome|dynactin complex	ATP binding|protein binding			skin(1)	1						GCCTTCTCCCGGTTCTTACTC	0.597												
ZAP70	7535	broad.mit.edu	37	2	98354253	98354253	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:98354253T>C	uc002syd.1	+	12	1723	c.1516T>C	c.(1516-1518)TAC>CAC	p.Y506H	ZAP70_uc002sye.1_Missense_Mutation_p.Y396H|ZAP70_uc002syf.1_Missense_Mutation_p.Y199H	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	506	Protein kinase.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						GCTCAAGTGGTACGCACCCGA	0.637												
TMEM131	23505	broad.mit.edu	37	2	98411544	98411544	+	Missense_Mutation	SNP	G	G	A	rs61753932		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:98411544G>A	uc002syh.3	-	29	3464	c.3235C>T	c.(3235-3237)CGG>TGG	p.R1079W		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	1079						integral to membrane				ovary(4)|central_nervous_system(2)	6						TTCAGTTCCCGAATAACTCTA	0.368												
VWA3B	200403	broad.mit.edu	37	2	98872590	98872590	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:98872590C>A	uc002syo.2	+	21	3060	c.2796C>A	c.(2794-2796)CGC>CGA	p.R932R	VWA3B_uc002sym.2_Silent_p.R932R|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Silent_p.R589R|VWA3B_uc002syp.1_Silent_p.R324R|VWA3B_uc002syq.1_Silent_p.R208R|VWA3B_uc002syr.1_Silent_p.R249R|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	932										ovary(3)|large_intestine(2)|skin(1)	6						TTAACAGGCGCTTGAATAAAA	0.348												
CNGA3	1261	broad.mit.edu	37	2	99006150	99006150	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:99006150T>C	uc002syt.2	+	6	896	c.479T>C	c.(478-480)GTG>GCG	p.V160A	CNGA3_uc002syu.2_Missense_Mutation_p.V142A|CNGA3_uc010fij.2_Missense_Mutation_p.V164A	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	160					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						GATGCGATCGTGGTGGACCCG	0.527												
C2orf55	343990	broad.mit.edu	37	2	99454683	99454683	+	Silent	SNP	C	C	T	rs147976810	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:99454683C>T	uc002szf.1	-	3	432	c.138G>A	c.(136-138)CCG>CCA	p.P46P		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	46											0						CTGTGGACGACGGCGATTCTT	0.408												
TSGA10	80705	broad.mit.edu	37	2	99636888	99636888	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:99636888C>T	uc002szg.3	-	16	2300	c.1672G>A	c.(1672-1674)GCA>ACA	p.A558T	TSGA10_uc002szh.3_Missense_Mutation_p.A558T|TSGA10_uc002szi.3_Missense_Mutation_p.A558T|TSGA10_uc010fin.1_Missense_Mutation_p.A558T	NM_182911	NP_878915	Q9BZW7	TSG10_HUMAN	testis specific, 10	558	Interaction with HIF1A (By similarity).				spermatogenesis	cytoplasm|nuclear membrane				ovary(1)|central_nervous_system(1)	2						CTCTCATTTGCCATCTGACTC	0.383												
MITD1	129531	broad.mit.edu	37	2	99787981	99787981	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:99787981T>C	uc002szs.1	-	3	430	c.382A>G	c.(382-384)ACT>GCT	p.T128A	MRPL30_uc002szl.1_Intron|MRPL30_uc002szr.2_Intron	NM_138798	NP_620153	Q8WV92	MITD1_HUMAN	MIT, microtubule interacting and transport,	128					protein transport	late endosome membrane				large_intestine(1)|ovary(1)	2						ACCTGATGAGTATGTCTAATA	0.294												
LYG1	129530	broad.mit.edu	37	2	99909004	99909004	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:99909004T>C	uc002szy.2	-	4	393	c.143A>G	c.(142-144)TAC>TGC	p.Y48C	MRPL30_uc002szl.1_Intron|LYG1_uc010yvo.1_Missense_Mutation_p.Y48C	NM_174898	NP_777558	Q8N1E2	LYG1_HUMAN	lysozyme g-like protein 1 precursor	48					cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity				0						GCTACCACAGTAGTTCAGGCC	0.532												
AFF3	3899	broad.mit.edu	37	2	100175428	100175428	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:100175428T>C	uc002tag.2	-	21	3430	c.3194A>G	c.(3193-3195)TAC>TGC	p.Y1065C	AFF3_uc002taf.2_Missense_Mutation_p.Y1090C	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	1065					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CAGGCATCGGTAACTGCAGGC	0.463											OREG0014830	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
MAP4K4	9448	broad.mit.edu	37	2	102314966	102314966	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:102314966T>C	uc002tbg.2	+	2	144	c.89T>C	c.(88-90)GTG>GCG	p.V30A	MAP4K4_uc002tbc.2_Missense_Mutation_p.V30A|MAP4K4_uc002tbd.2_Missense_Mutation_p.V30A|MAP4K4_uc002tbe.2_Missense_Mutation_p.V30A|MAP4K4_uc002tbf.2_Missense_Mutation_p.V30A|MAP4K4_uc010yvy.1_Missense_Mutation_p.V30A|MAP4K4_uc002tbh.2_Missense_Mutation_p.V30A|MAP4K4_uc002tbi.2_Missense_Mutation_p.V30A	NM_145687	NP_663720	O95819	M4K4_HUMAN	mitogen-activated protein kinase kinase kinase	30	Protein kinase.				intracellular protein kinase cascade|regulation of JNK cascade|response to stress	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						CTGGTGGAAGTGGTTGGAAAT	0.478												
SLC9A4	389015	broad.mit.edu	37	2	103119969	103119969	+	Silent	SNP	C	C	T	rs147197838		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:103119969C>T	uc002tbz.3	+	3	1240	c.783C>T	c.(781-783)GTC>GTT	p.V261V		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	261	Extracellular (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						TAGAAACTGTCGACATTTTGG	0.358												
SLC9A4	389015	broad.mit.edu	37	2	103121775	103121775	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:103121775A>G	uc002tbz.3	+	4	1500	c.1043A>G	c.(1042-1044)TAC>TGC	p.Y348C		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	348	Extracellular (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						CAGACATCATACACGACCATC	0.468												
SULT1C4	27233	broad.mit.edu	37	2	108998284	108998284	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:108998284G>A	uc002tea.1	+	2	609	c.236G>A	c.(235-237)CGG>CAG	p.R79Q	SULT1C4_uc002tdz.2_Missense_Mutation_p.R79Q|SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Missense_Mutation_p.R79Q	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	79					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						AAAAGTAAACGGGCACCGACT	0.398												
GCC2	9648	broad.mit.edu	37	2	109086207	109086207	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:109086207T>C	uc002tec.2	+	6	576	c.422T>C	c.(421-423)GTA>GCA	p.V141A	GCC2_uc002ted.2_Missense_Mutation_p.V40A	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	141	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						TTGATGGCAGTACGTTCCAAA	0.338												
GCC2	9648	broad.mit.edu	37	2	109102288	109102288	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:109102288A>G	uc002tec.2	+	15	3870	c.3716A>G	c.(3715-3717)GAA>GGA	p.E1239G	GCC2_uc002ted.2_Missense_Mutation_p.E1138G	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	1239	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						ATTCTATAGGAAACTGATCAC	0.284												
RANBP2	5903	broad.mit.edu	37	2	109371486	109371486	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:109371486A>G	uc002tem.3	+	16	2454	c.2328A>G	c.(2326-2328)AAA>AAG	p.K776K		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	776					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						CAGAAATAAAACATTCTACAC	0.358												
TMEM87B	84910	broad.mit.edu	37	2	112817574	112817574	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:112817574T>A	uc002thm.2	+	2	555	c.186T>A	c.(184-186)TTT>TTA	p.F62L	TMEM87B_uc010fkg.2_Missense_Mutation_p.F62L|TMEM87B_uc010fkh.2_Missense_Mutation_p.F62L	NM_032824	NP_116213	Q96K49	TM87B_HUMAN	transmembrane protein 87B precursor	62						integral to membrane					0						CTTTGATATTTAGGAAAACTA	0.219												
TMEM87B	84910	broad.mit.edu	37	2	112824632	112824632	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:112824632T>C	uc002thm.2	+	4	807	c.438T>C	c.(436-438)TTT>TTC	p.F146F	TMEM87B_uc010fkg.2_Silent_p.F146F|TMEM87B_uc010fkh.2_Silent_p.F146F	NM_032824	NP_116213	Q96K49	TM87B_HUMAN	transmembrane protein 87B precursor	146						integral to membrane					0						CACAGGTGTTTCCCTCTTTGA	0.318												
ZC3H6	376940	broad.mit.edu	37	2	113080227	113080227	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:113080227T>C	uc002thq.1	+	9	1482	c.1088T>C	c.(1087-1089)GTG>GCG	p.V363A		NM_198581	NP_940983	P61129	ZC3H6_HUMAN	zinc finger CCCH-type domain containing 6	363	Potential.						nucleic acid binding|zinc ion binding			ovary(3)|central_nervous_system(1)	4						TATTTTTAGGTGTTGAATACT	0.333												
POLR1B	84172	broad.mit.edu	37	2	113304624	113304624	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:113304624G>A	uc002thw.2	+	2	793	c.213G>A	c.(211-213)GAG>GAA	p.E71E	POLR1B_uc010fkn.2_Intron|POLR1B_uc002thx.2_5'UTR|POLR1B_uc010fko.2_Silent_p.E71E|POLR1B_uc010fkp.2_Intron|POLR1B_uc010yxn.1_Silent_p.E109E|POLR1B_uc002thy.2_Intron|POLR1B_uc010yxo.1_Intron	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	71					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						TCAAAGATGAGCGTATCTCTT	0.408												
SLC20A1	6574	broad.mit.edu	37	2	113417111	113417111	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:113417111G>A	uc002tib.2	+	8	1825	c.1379G>A	c.(1378-1380)CGA>CAA	p.R460Q	SLC20A1_uc002tic.1_Missense_Mutation_p.R272Q	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	460	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						AAGCGAATTCGAATGGACAGT	0.488												
CKAP2L	150468	broad.mit.edu	37	2	113504147	113504147	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:113504147T>C	uc002tie.2	-	6	1687	c.1608A>G	c.(1606-1608)GTA>GTG	p.V536V	CKAP2L_uc002tif.2_Silent_p.V125V|CKAP2L_uc010yxp.1_Silent_p.V371V	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	536						centrosome					0						CATTAGAAGGTACACCCTGAA	0.348												
CKAP2L	150468	broad.mit.edu	37	2	113509871	113509871	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:113509871C>T	uc002tie.2	-	5	1654	c.1575G>A	c.(1573-1575)CTG>CTA	p.L525L	CKAP2L_uc002tif.2_Silent_p.L114L|CKAP2L_uc010yxp.1_Silent_p.L360L|CKAP2L_uc010yxq.1_Silent_p.L360L	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	525						centrosome					0						GACATTCTGTCAGAGTGTTGT	0.343												
RABL2A	11159	broad.mit.edu	37	2	114398540	114398540	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:114398540A>G	uc002tkn.3	+	6	581	c.367A>G	c.(367-369)AGG>GGG	p.R123G	RABL2A_uc010flb.2_Missense_Mutation_p.R123G|RABL2A_uc002tkl.3_Intron|RABL2A_uc002tkm.3_Intron|RABL2A_uc002tks.3_Missense_Mutation_p.R123G|RABL2A_uc002tkr.2_Missense_Mutation_p.R123G|RABL2A_uc002tkp.3_Missense_Mutation_p.R123G	NM_007082	NP_009013	Q9UBK7	RBL2A_HUMAN	RAB, member of RAS oncogene family-like 2A	123					small GTPase mediated signal transduction		GTP binding|GTPase activity			skin(1)	1						TCGGGAGTTCAGGCCAGAGAT	0.507												
DDX18	8886	broad.mit.edu	37	2	118586976	118586976	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:118586976A>G	uc002tlh.1	+	13	1903	c.1804A>G	c.(1804-1806)AAT>GAT	p.N602D		NM_006773	NP_006764	Q9NVP1	DDX18_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	602							ATP binding|ATP-dependent RNA helicase activity|RNA binding			breast(2)|ovary(1)|lung(1)	4						CTTTAATGTTAATAACCTAAA	0.373												
CCDC93	54520	broad.mit.edu	37	2	118701647	118701647	+	Missense_Mutation	SNP	G	G	A	rs142085524	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:118701647G>A	uc002tlj.2	-	18	1492	c.1366C>T	c.(1366-1368)CGG>TGG	p.R456W	CCDC93_uc010fld.1_Missense_Mutation_p.R456W	NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	456										large_intestine(1)|ovary(1)	2						ATATTATACCGTCTGTCTAGG	0.308												
TMEM177	80775	broad.mit.edu	37	2	120438936	120438936	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:120438936C>T	uc010flg.1	+	2	980	c.507C>T	c.(505-507)CAC>CAT	p.H169H	TMEM177_uc002tme.2_Intron|TMEM177_uc002tmc.1_Silent_p.H169H|TMEM177_uc002tmd.2_Silent_p.H169H|TMEM177_uc010flh.2_Intron	NM_001105198	NP_001098668	Q53S58	TM177_HUMAN	transmembrane protein 177	169	Helical; (Potential).					integral to membrane				ovary(1)	1	Colorectal(110;0.196)					CTGCCGTGCACGCCCTGCTGG	0.652												
GLI2	2736	broad.mit.edu	37	2	121746705	121746705	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:121746705C>T	uc010flp.2	+	13	3245	c.3215C>T	c.(3214-3216)GCG>GTG	p.A1072V	GLI2_uc002tmq.1_Missense_Mutation_p.A744V|GLI2_uc002tmr.1_Missense_Mutation_p.A727V|GLI2_uc002tmt.3_Missense_Mutation_p.A744V|GLI2_uc002tmu.3_Missense_Mutation_p.A727V	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1072					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				TACATCAAGGCGCACGCCAGT	0.697												
TFCP2L1	29842	broad.mit.edu	37	2	122038815	122038815	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:122038815T>C	uc002tmx.2	-	2	188	c.95A>G	c.(94-96)GAG>GGG	p.E32G	TFCP2L1_uc010flr.2_Missense_Mutation_p.E32G	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	32	Mediate transcriptional repression.				female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					CTGGGGTTCCTCCTGCTTGAA	0.632												
MKI67IP	84365	broad.mit.edu	37	2	122493259	122493259	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:122493259T>G	uc002tnk.2	-	2	250	c.173A>C	c.(172-174)GAA>GCA	p.E58A	MKI67IP_uc010fls.2_Missense_Mutation_p.E58A	NM_032390	NP_115766	Q9BYG3	MK67I_HUMAN	MKI67 interacting nucleolar phosphoprotein	58	RRM.				protein complex assembly|rRNA metabolic process|rRNA transcription	condensed nuclear chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|protein binding|RNA binding				0						GATCTGGGTTTCGTCAAGTAG	0.393												
MKI67IP	84365	broad.mit.edu	37	2	122494368	122494368	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:122494368A>G	uc002tnk.2	-	1	136	c.59T>C	c.(58-60)GTC>GCC	p.V20A	MKI67IP_uc010fls.2_Missense_Mutation_p.V20A	NM_032390	NP_115766	Q9BYG3	MK67I_HUMAN	MKI67 interacting nucleolar phosphoprotein	20					protein complex assembly|rRNA metabolic process|rRNA transcription	condensed nuclear chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|protein binding|RNA binding				0						TTGAAACTCGACATCTTCCTG	0.632												
CNTNAP5	129684	broad.mit.edu	37	2	125504828	125504828	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:125504828G>T	uc002tno.2	+	14	2461	c.2097G>T	c.(2095-2097)TGG>TGT	p.W699C	CNTNAP5_uc010flu.2_Missense_Mutation_p.W700C	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	699	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TTACCTGGTGGATTGGGCGGT	0.552												
MYO7B	4648	broad.mit.edu	37	2	128389922	128389922	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:128389922G>A	uc002top.2	+	38	5326	c.5273G>A	c.(5272-5274)CGG>CAG	p.R1758Q	MYO7B_uc002tos.1_5'Flank|MYO7B_uc002tot.2_5'Flank	NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1758	MyTH4 2.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		ATAGACACTCGGAGGGGGAAG	0.682												
MYO7B	4648	broad.mit.edu	37	2	128389955	128389955	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:128389955G>A	uc002top.2	+	38	5359	c.5306G>A	c.(5305-5307)CGC>CAC	p.R1769H	MYO7B_uc002tos.1_5'Flank|MYO7B_uc002tot.2_5'Flank	NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1769	MyTH4 2.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GACTGCAGCCGCCGAATCCAG	0.682												
UGGT1	56886	broad.mit.edu	37	2	128934410	128934410	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:128934410C>A	uc002tps.2	+	32	3740	c.3562C>A	c.(3562-3564)CCT>ACT	p.P1188T	UGGT1_uc002tpr.2_Missense_Mutation_p.P1164T	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	1188					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						TGATTCTCCCCCTGATGCTGA	0.418												
FAM123C	205147	broad.mit.edu	37	2	131520855	131520855	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:131520855A>G	uc002trw.2	+	2	1400	c.1210A>G	c.(1210-1212)AGC>GGC	p.S404G	FAM123C_uc010fmv.2_Missense_Mutation_p.S404G|FAM123C_uc010fms.1_Missense_Mutation_p.S404G|FAM123C_uc010fmt.1_Missense_Mutation_p.S404G|FAM123C_uc010fmu.1_Missense_Mutation_p.S404G	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	404										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GGAAGCTGAGAGCCCAGGCAC	0.627												
FAM123C	205147	broad.mit.edu	37	2	131521980	131521980	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:131521980A>G	uc002trw.2	+	2	2525	c.2335A>G	c.(2335-2337)ACA>GCA	p.T779A	FAM123C_uc010fmv.2_Missense_Mutation_p.T779A|FAM123C_uc010fms.1_Missense_Mutation_p.T779A|FAM123C_uc010fmt.1_Missense_Mutation_p.T779A|FAM123C_uc010fmu.1_Missense_Mutation_p.T779A	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	779										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GCAGCTCAGCACAGAGGCTGT	0.672												
MGAT5	4249	broad.mit.edu	37	2	135185960	135185960	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:135185960T>A	uc002ttv.1	+	14	1964	c.1819T>A	c.(1819-1821)TTT>ATT	p.F607I		NM_002410	NP_002401	Q09328	MGT5A_HUMAN	N-acetylglucosaminyltransferase V	607	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0964)		GCCATATGAATTTACGTGCGA	0.453												
RAB3GAP1	22930	broad.mit.edu	37	2	135848570	135848570	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:135848570T>C	uc002tuj.2	+	4	178	c.153T>C	c.(151-153)GGT>GGC	p.G51G	RAB3GAP1_uc010fnf.2_Silent_p.G51G|RAB3GAP1_uc010fng.2_5'UTR|RAB3GAP1_uc010fnh.1_RNA	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein	51						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		ACATATAGGGTATATTTACTT	0.343												
LCT	3938	broad.mit.edu	37	2	136548301	136548301	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:136548301C>T	uc002tuu.1	-	15	5273	c.5262G>A	c.(5260-5262)CAG>CAA	p.Q1754Q		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1754	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TTTCTTCCCGCTGGGACACTC	0.517												
CXCR4	7852	broad.mit.edu	37	2	136872772	136872772	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:136872772G>A	uc002tuz.2	-	2	821	c.726C>T	c.(724-726)GTC>GTT	p.V242V	CXCR4_uc002tuy.2_Silent_p.V246V|CXCR4_uc010fnk.2_Silent_p.V227V	NM_003467	NP_003458	P61073	CXCR4_HUMAN	chemokine (C-X-C motif) receptor 4 isoform b	242	Helical; Name=6.			VIL -> IIP (in Ref. 12; AAK29630).	activation of MAPK activity|apoptosis|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|inflammatory response|initiation of viral infection|regulation of chemotaxis|response to hypoxia|response to virus	cell leading edge|cell surface|cytoplasmic membrane-bounded vesicle|integral to membrane|plasma membrane	actin binding|C-X-C chemokine receptor activity|coreceptor activity|myosin light chain binding|ubiquitin binding|ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.155)	Framycetin(DB00452)	GGATGAGGATGACTGTGGTCT	0.517												
THSD7B	80731	broad.mit.edu	37	2	138169187	138169187	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:138169187A>G	uc002tva.1	+	13	2611	c.2611A>G	c.(2611-2613)AGA>GGA	p.R871G	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.R761G	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGGGAAAAGCAGAAAGAAGGA	0.358												
LRP1B	53353	broad.mit.edu	37	2	141232837	141232837	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:141232837C>A	uc002tvj.1	-	60	10467	c.9495G>T	c.(9493-9495)CAG>CAT	p.Q3165H		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3165	Extracellular (Potential).|LDL-receptor class B 30.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TGACAACACTCTGATTGGTTC	0.363										TSP Lung(27;0.18)		
LRP1B	53353	broad.mit.edu	37	2	141243084	141243084	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:141243084T>C	uc002tvj.1	-	59	10225	c.9253A>G	c.(9253-9255)AAC>GAC	p.N3085D		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3085	Extracellular (Potential).|LDL-receptor class B 28.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACCGCTGTGTTATGAACTACC	0.353										TSP Lung(27;0.18)		
KYNU	8942	broad.mit.edu	37	2	143718259	143718259	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:143718259G>A	uc002tvl.2	+	8	779	c.649G>A	c.(649-651)GTG>ATG	p.V217M	KYNU_uc002tvk.2_Missense_Mutation_p.V217M|KYNU_uc010fnm.2_Missense_Mutation_p.V217M	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	217					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	CTCAATTGCAGTGATCCTGTT	0.423												
ARHGAP15	55843	broad.mit.edu	37	2	144525621	144525621	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:144525621T>C	uc002tvm.3	+	14	1459	c.1308T>C	c.(1306-1308)CCT>CCC	p.P436P	ARHGAP15_uc002tvn.2_Silent_p.P202P	NM_018460	NP_060930	Q53QZ3	RHG15_HUMAN	ARHGAP15	436	Rho-GAP.				regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.151)		TATTTGGACCTACCCTTCTGC	0.458												
ORC4L	5000	broad.mit.edu	37	2	148693233	148693233	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:148693233T>C	uc002twi.2	-	14	1292	c.1157A>G	c.(1156-1158)AAG>AGG	p.K386R	ORC4L_uc002twj.2_Missense_Mutation_p.K386R|ORC4L_uc010zbo.1_Missense_Mutation_p.K312R|ORC4L_uc010zbp.1_Missense_Mutation_p.K169R|ORC4L_uc010fnr.2_3'UTR|ORC4L_uc010zbq.1_Missense_Mutation_p.K302R|ORC4L_uc002twk.2_Missense_Mutation_p.K386R|ORC4L_uc002twl.1_RNA	NM_181741	NP_859525	O43929	ORC4_HUMAN	origin recognition complex subunit 4	386					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	ATP binding|DNA replication origin binding|nucleoside-triphosphatase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.0963)|COAD - Colon adenocarcinoma(177;0.203)		TTCCATGGGCTTTATTAATTC	0.383												
ORC4L	5000	broad.mit.edu	37	2	148733504	148733504	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:148733504A>G	uc002twi.2	-	2	159	c.24T>C	c.(22-24)AGT>AGC	p.S8S	ORC4L_uc002twj.2_Silent_p.S8S|ORC4L_uc010zbo.1_Intron|ORC4L_uc010zbp.1_5'UTR|ORC4L_uc010fnr.2_Silent_p.S8S|ORC4L_uc010zbq.1_Intron|ORC4L_uc002twk.2_Silent_p.S8S|ORC4L_uc010zbr.1_Silent_p.S8S	NM_181741	NP_859525	O43929	ORC4_HUMAN	origin recognition complex subunit 4	8					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	ATP binding|DNA replication origin binding|nucleoside-triphosphatase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.0963)|COAD - Colon adenocarcinoma(177;0.203)		TTAAGCTGTTACTCTTTGATT	0.294												
MBD5	55777	broad.mit.edu	37	2	149247708	149247708	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:149247708A>G	uc002twm.3	+	12	4796	c.3808A>G	c.(3808-3810)AAA>GAA	p.K1270E	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Missense_Mutation_p.K1270E|MBD5_uc002two.2_Missense_Mutation_p.K528E|MBD5_uc002twp.2_Missense_Mutation_p.K320E	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1270						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		TAATAACTACAAAAGAACTAT	0.418												
NMI	9111	broad.mit.edu	37	2	152139394	152139394	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:152139394A>G	uc002txi.2	-	2	399	c.69T>C	c.(67-69)GAT>GAC	p.D23D	NMI_uc010zbx.1_Silent_p.D23D|NMI_uc002txj.2_Silent_p.D23D	NM_004688	NP_004679	Q13287	NMI_HUMAN	N-myc and STAT interactor	23					inflammatory response|JAK-STAT cascade|transcription from RNA polymerase II promoter	cytoplasm|nucleus	nucleotide binding|protein binding|transcription cofactor activity				0				BRCA - Breast invasive adenocarcinoma(221;0.0571)		TATTTTGTTCATCTTTTATAA	0.269												
RIF1	55183	broad.mit.edu	37	2	152321218	152321218	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:152321218A>T	uc002txm.2	+	30	5314	c.5184A>T	c.(5182-5184)AGA>AGT	p.R1728S	RIF1_uc002txl.2_Missense_Mutation_p.R1728S|RIF1_uc002txn.2_Missense_Mutation_p.R1728S|RIF1_uc002txo.2_Missense_Mutation_p.R1728S|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1728					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		GGGTGAGGAGATCTAAAGGTT	0.368												
NEB	4703	broad.mit.edu	37	2	152476094	152476094	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:152476094G>A	uc010fnx.2	-	69	10205	c.10014C>T	c.(10012-10014)ATC>ATT	p.I3338I		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3338	Nebulin 91.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGGCCAAAACGATACCAAGCA	0.478												
NEB	4703	broad.mit.edu	37	2	152584353	152584353	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:152584353T>C	uc010fnx.2	-	5	337	c.146A>G	c.(145-147)AAA>AGA	p.K49R		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	49					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CAGAGCTGGTTTGGAAGTTTC	0.443												
FMNL2	114793	broad.mit.edu	37	2	153192179	153192179	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:153192179T>C	uc002tye.2	+	1	429	c.62T>C	c.(61-63)TTG>TCG	p.L21S		NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	21					actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						AACGTGCCTTTGAAGCTGCCG	0.413												
PRPF40A	55660	broad.mit.edu	37	2	153514439	153514439	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:153514439T>C	uc002tyh.3	-	25	2686	c.2664A>G	c.(2662-2664)AAA>AAG	p.K888K	PRPF40A_uc002tyg.3_Silent_p.K344K|PRPF40A_uc010zcd.1_Silent_p.K839K	NM_017892	NP_060362	O75400	PR40A_HUMAN	formin binding protein 3	915					mRNA processing|RNA splicing	nuclear matrix|nuclear speck	protein binding				0						GCGATTTGTGTTTTGATTCTG	0.348												
NR4A2	4929	broad.mit.edu	37	2	157185874	157185874	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:157185874G>A	uc002tyz.3	-	3	1247	c.825C>T	c.(823-825)TAC>TAT	p.Y275Y	NR4A2_uc002tyx.3_Silent_p.Y212Y|NR4A2_uc010zcf.1_Silent_p.Y275Y|NR4A2_uc010zcg.1_5'Flank	NM_006186	NP_006177	P43354	NR4A2_HUMAN	nuclear receptor subfamily 4, group A, member 2	275	NR C4-type.|Nuclear receptor.				cellular response to extracellular stimulus|dopaminergic neuron differentiation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus	nucleoplasm	sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						TGCGCACGCCGTAGTGTTGGC	0.677												
GALNT5	11227	broad.mit.edu	37	2	158152254	158152254	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:158152254A>G	uc002tzg.2	+	4	2076	c.1821A>G	c.(1819-1821)TTA>TTG	p.L607L	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	607	Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						GAGTTTATTTAAGTAGAAAGA	0.373												
ERMN	57471	broad.mit.edu	37	2	158182017	158182017	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:158182017T>C	uc002tzh.2	-	1	400	c.138A>G	c.(136-138)GAA>GAG	p.E46E	ERMN_uc010zcj.1_5'Flank|ERMN_uc010zck.1_Silent_p.E46E|ERMN_uc002tzi.2_Silent_p.E59E	NM_020711	NP_065762	Q8TAM6	ERMIN_HUMAN	ermin, ERM-like protein isoform b	46						cytoplasm|cytoskeleton				ovary(1)|skin(1)	2						CCAGACTGGGTTCTACCCTGT	0.458												
CYTIP	9595	broad.mit.edu	37	2	158287107	158287107	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:158287107A>C	uc002tzj.1	-	5	512	c.440T>G	c.(439-441)GTC>GGC	p.V147G	CYTIP_uc010zcl.1_Missense_Mutation_p.V41G	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	147	PDZ.				regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						CAGGTCAACGACTTGTTTGTA	0.418												
ACVR1C	130399	broad.mit.edu	37	2	158412846	158412846	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:158412846T>C	uc002tzk.3	-	3	548	c.305_splice	c.e3-1	p.A102_splice	ACVR1C_uc002tzl.3_Intron|ACVR1C_uc010fof.2_Intron|ACVR1C_uc010foe.2_Splice_Site_p.A52_splice	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1						apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						TTGGTGATGCTACAGTTTAAA	0.403												
ACVR1	90	broad.mit.edu	37	2	158594106	158594106	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:158594106C>A	uc002tzm.3	-	12	1806	c.1467G>T	c.(1465-1467)CTG>CTT	p.L489L	ACVR1_uc002tzn.3_Silent_p.L489L|ACVR1_uc010fog.2_Silent_p.L489L	NM_001111067	NP_001104537	Q04771	ACVR1_HUMAN	activin A receptor, type I precursor	489	Cytoplasmic (Potential).|Protein kinase.				BMP signaling pathway|G1/S transition of mitotic cell cycle|negative regulation of activin receptor signaling pathway|negative regulation of apoptosis|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	activin receptor complex	activin binding|ATP binding|follistatin binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta binding			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.104)	Adenosine triphosphate(DB00171)	TTTTGATACGCAGTGCTGTGA	0.388												
UPP2	151531	broad.mit.edu	37	2	158971625	158971625	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:158971625G>A	uc002tzp.2	+	3	387	c.193G>A	c.(193-195)GGT>AGT	p.G65S	UPP2_uc002tzo.2_Missense_Mutation_p.G122S	NM_173355	NP_775491	O95045	UPP2_HUMAN	uridine phosphorylase 2 isoform a	65					nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process|pyrimidine nucleoside salvage|uridine metabolic process	cytosol|type III intermediate filament	uridine phosphorylase activity				0						TGTCTGTGTCGGTGGGAGCCC	0.418												
PKP4	8502	broad.mit.edu	37	2	159517885	159517885	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:159517885C>T	uc002tzv.2	+	13	2394	c.2134C>T	c.(2134-2136)CGG>TGG	p.R712W	PKP4_uc002tzt.1_Missense_Mutation_p.R564W|PKP4_uc002tzu.2_Missense_Mutation_p.R712W|PKP4_uc002tzw.2_Missense_Mutation_p.R712W|PKP4_uc002tzx.2_Missense_Mutation_p.R369W|PKP4_uc002tzy.1_Missense_Mutation_p.R370W|PKP4_uc002uaa.2_Missense_Mutation_p.R564W|uc002uab.1_RNA|PKP4_uc002uac.2_5'Flank	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	712	ARM 6.				cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						GAAGCAAATGCGGTCCTGCGA	0.577										HNSCC(62;0.18)		
LY75	4065	broad.mit.edu	37	2	160738648	160738648	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:160738648T>C	uc002ubc.3	-	7	1302	c.1233A>G	c.(1231-1233)AAA>AAG	p.K411K	LY75_uc002ubb.3_Silent_p.K411K|LY75_uc010fos.2_Silent_p.K411K|LY75_uc010fot.1_Silent_p.K411K	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	411	C-type lectin 2.|Extracellular (Potential).				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		CATTATGGAGTTTTGTGACAA	0.388												
RBMS1	5937	broad.mit.edu	37	2	161133827	161133827	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:161133827G>A	uc002ubo.2	-	12	1574	c.1130C>T	c.(1129-1131)GCG>GTG	p.A377V	RBMS1_uc002ubj.2_Missense_Mutation_p.A357V|RBMS1_uc002ubk.2_Missense_Mutation_p.A341V|RBMS1_uc002ubl.2_Missense_Mutation_p.A372V|RBMS1_uc002ubn.2_Missense_Mutation_p.A374V|RBMS1_uc002ubi.3_Missense_Mutation_p.A390V|RBMS1_uc002ubm.2_Missense_Mutation_p.A360V|RBMS1_uc002ubp.2_Missense_Mutation_p.A393V	NM_016836	NP_058520	P29558	RBMS1_HUMAN	RNA binding motif, single stranded interacting	377					DNA replication|RNA processing	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding|single-stranded DNA binding				0						AACAGGAACCGCTGTCGTCTG	0.438												
RBMS1	5937	broad.mit.edu	37	2	161135111	161135111	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:161135111A>G	uc002ubo.2	-	11	1454	c.1010T>C	c.(1009-1011)ATC>ACC	p.I337T	RBMS1_uc002ubj.2_Missense_Mutation_p.I317T|RBMS1_uc002ubk.2_Missense_Mutation_p.I301T|RBMS1_uc002ubl.2_Missense_Mutation_p.I332T|RBMS1_uc002ubn.2_Missense_Mutation_p.I334T|RBMS1_uc002ubi.3_Missense_Mutation_p.I350T|RBMS1_uc002ubm.2_Missense_Mutation_p.I320T|RBMS1_uc002ubp.2_Missense_Mutation_p.I353T	NM_016836	NP_058520	P29558	RBMS1_HUMAN	RNA binding motif, single stranded interacting	337					DNA replication|RNA processing	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding|single-stranded DNA binding				0						CAGAGGGCTGATCATTGATGC	0.507											OREG0015036	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
RBMS1	5937	broad.mit.edu	37	2	161141508	161141508	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:161141508G>A	uc002ubo.2	-	8	1248	c.804C>T	c.(802-804)AAC>AAT	p.N268N	RBMS1_uc002ubj.2_Silent_p.N232N|RBMS1_uc002ubk.2_Silent_p.N232N|RBMS1_uc002ubl.2_Silent_p.N263N|RBMS1_uc002ubn.2_Silent_p.N265N|RBMS1_uc002ubi.3_Silent_p.N265N|RBMS1_uc002ubm.2_Silent_p.N235N|RBMS1_uc002ubp.2_Silent_p.N268N|RBMS1_uc010fox.2_Silent_p.N268N	NM_016836	NP_058520	P29558	RBMS1_HUMAN	RNA binding motif, single stranded interacting	268					DNA replication|RNA processing	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding|single-stranded DNA binding				0						CGACATACCCGTTCTGTATAG	0.343												
TBR1	10716	broad.mit.edu	37	2	162273269	162273269	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:162273269G>A	uc002ubw.1	+	1	650	c.348G>A	c.(346-348)GCG>GCA	p.A116A	TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	116						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						CACAGTCTGCGGCCACTGCTC	0.647												
TBR1	10716	broad.mit.edu	37	2	162275431	162275431	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:162275431A>G	uc002ubw.1	+	4	1300	c.998A>G	c.(997-999)TAC>TGC	p.Y333C	TBR1_uc010foy.2_Missense_Mutation_p.Y46C	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	333	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						TTGCACAAGTACCAGCCCCGC	0.612												
GCG	2641	broad.mit.edu	37	2	163002048	163002048	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:163002048A>G	uc002ucc.2	-	4	491	c.392_splice	c.e4+1	p.D131_splice		NM_002054	NP_002045	P01275	GLUC_HUMAN	glucagon preproprotein						cell proliferation|cellular response to glucagon stimulus|energy reserve metabolic process|feeding behavior|regulation of insulin secretion	plasma membrane|soluble fraction	hormone activity				0					Exenatide(DB01276)|Phentolamine(DB00692)	GTACAGACTTACTCTCGCCTT	0.398												
KCNH7	90134	broad.mit.edu	37	2	163230092	163230092	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:163230092T>C	uc002uch.1	-	15	3424	c.3212A>G	c.(3211-3213)TAC>TGC	p.Y1071C		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	1071	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TACCATACTGTAGGCTGGGGG	0.478												
KCNH7	90134	broad.mit.edu	37	2	163393494	163393494	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:163393494T>C	uc002uch.1	-	3	616	c.404A>G	c.(403-405)AAT>AGT	p.N135S	KCNH7_uc002uci.2_Missense_Mutation_p.N135S	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	135	Cytoplasmic (Potential).|PAC.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	AGCGTTTTCATTATCCGTCAC	0.378												
FIGN	55137	broad.mit.edu	37	2	164467285	164467285	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:164467285C>T	uc002uck.1	-	3	1368	c.1057G>A	c.(1057-1059)GAC>AAC	p.D353N		NM_018086	NP_060556	Q5HY92	FIGN_HUMAN	fidgetin	353						nuclear matrix	ATP binding|nucleoside-triphosphatase activity			large_intestine(2)|ovary(1)|skin(1)	4						ATGCTGTTGTCGGGCATTCTG	0.448												
XIRP2	129446	broad.mit.edu	37	2	168105878	168105878	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:168105878T>C	uc002udx.2	+	8	7994	c.7976T>C	c.(7975-7977)GTT>GCT	p.V2659A	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.V2484A|XIRP2_uc010fpq.2_Missense_Mutation_p.V2437A|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Missense_Mutation_p.V5A	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2484					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAAAAGGAAGTTTTACAAAGC	0.403												
STK39	27347	broad.mit.edu	37	2	168931518	168931518	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:168931518G>A	uc002uea.2	-	12	1376	c.1216C>T	c.(1216-1218)CGA>TGA	p.R406*		NM_013233	NP_037365	Q9UEW8	STK39_HUMAN	serine threonine kinase 39 (STE20/SPS1 homolog,	406					response to stress	cytoplasm|nucleus	ATP binding|protein binding|receptor signaling protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2						TTTACTCTTCGTGACTGTAAA	0.318												
LRP2	4036	broad.mit.edu	37	2	170009453	170009453	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:170009453C>T	uc002ues.2	-	67	12530	c.12317G>A	c.(12316-12318)CGA>CAA	p.R4106Q		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4106	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GCCCTCCCCTCGCACAGTGTA	0.468												
LRP2	4036	broad.mit.edu	37	2	170044660	170044660	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:170044660C>T	uc002ues.2	-	49	9361	c.9148G>A	c.(9148-9150)GTC>ATC	p.V3050I		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3050	LDL-receptor class A 24.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding	p.V3050I(1)		ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCATCACAGACGAAGGTTTTA	0.512												
LRP2	4036	broad.mit.edu	37	2	170097525	170097525	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:170097525T>C	uc002ues.2	-	25	4231	c.4018A>G	c.(4018-4020)AAT>GAT	p.N1340D	LRP2_uc010zdf.1_Missense_Mutation_p.N1203D	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1340	LDL-receptor class A 15.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCTGTCCCATTGGGGCAGTCA	0.483												
FASTKD1	79675	broad.mit.edu	37	2	170413695	170413695	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:170413695A>G	uc002uev.3	-	6	1470	c.1082_splice	c.e6+1	p.R361_splice	FASTKD1_uc002uew.3_Splice_Site|FASTKD1_uc002uex.3_Splice_Site_p.R347_splice	NM_024622	NP_078898	Q53R41	FAKD1_HUMAN	FAST kinase domains 1						apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(4)	4						CAGAAAAGATACCTTTTAATC	0.373												
UBR3	130507	broad.mit.edu	37	2	170843155	170843155	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:170843155A>T	uc010zdi.1	+	25	3635	c.3635A>T	c.(3634-3636)GAT>GTT	p.D1212V	UBR3_uc002ufr.3_Intron|UBR3_uc010fqa.2_Missense_Mutation_p.D33V|UBR3_uc002uft.3_Missense_Mutation_p.D65V	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1212					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						TTTCCCTCAGATTCTCCTGAG	0.403												
SP5	389058	broad.mit.edu	37	2	171572883	171572883	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:171572883C>T	uc002uge.2	+	2	332	c.166C>T	c.(166-168)CAG>TAG	p.Q56*	LOC440925_uc002ugd.2_5'Flank	NM_001003845	NP_001003845	Q6BEB4	SP5_HUMAN	Sp5 transcription factor	56					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ggACTTCCTGCAGGTGCCCTA	0.647												
GAD1	2571	broad.mit.edu	37	2	171700573	171700573	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:171700573A>G	uc002ugi.2	+	7	1079	c.657A>G	c.(655-657)GCA>GCG	p.A219A		NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	219					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	ATGAAATTGCACCAGTGTTTG	0.368												
HAT1	8520	broad.mit.edu	37	2	172823402	172823402	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:172823402A>G	uc002uhi.2	+	8	831	c.755A>G	c.(754-756)CAT>CGT	p.H252R	HAT1_uc010fqi.2_Missense_Mutation_p.H87R|HAT1_uc002uhj.2_Missense_Mutation_p.H167R	NM_003642	NP_003633	O14929	HAT1_HUMAN	histone acetyltransferase 1	252					chromatin silencing at telomere|DNA packaging	cytoplasm|nuclear matrix|nucleoplasm	histone acetyltransferase activity|protein binding			large_intestine(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.216)			GGTCAAGGCCATGGTGCTCAA	0.323												
DLX2	1746	broad.mit.edu	37	2	172965310	172965310	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:172965310G>A	uc002uhn.2	-	3	1160	c.948C>T	c.(946-948)GGC>GGT	p.G316G		NM_004405	NP_004396	Q07687	DLX2_HUMAN	distal-less homeobox 2	316	Poly-Gly.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.216)			CGCCCCCGCCGCCGTGATGGT	0.667												
ZAK	51776	broad.mit.edu	37	2	174131421	174131421	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:174131421C>T	uc002uhz.2	+	20	2546	c.2346C>T	c.(2344-2346)CCC>CCT	p.P782P	uc002uib.2_Intron	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	782					activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			GGCCATCTCCCGCCAAAACCA	0.473												
SP3	6670	broad.mit.edu	37	2	174819995	174819995	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:174819995A>G	uc002uig.2	-	4	1409	c.1245T>C	c.(1243-1245)GGT>GGC	p.G415G	SP3_uc002uie.2_Silent_p.G347G|SP3_uc002uif.2_Silent_p.G362G|SP3_uc010zel.1_Silent_p.G412G	NM_003111	NP_003102	Q02447	SP3_HUMAN	Sp3 transcription factor isoform 1	415	Transactivation domain (Gln-rich).				negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	protein binding|zinc ion binding		EWSR1/SP3(3)	soft_tissue(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.185)			GTGGTGTAATACCTTGCACAA	0.443												
KIAA1715	80856	broad.mit.edu	37	2	176857025	176857025	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:176857025C>T	uc002ukc.1	-	4	384	c.191G>A	c.(190-192)TGG>TAG	p.W64*	KIAA1715_uc010zer.1_Nonsense_Mutation_p.W64*|KIAA1715_uc010fqw.1_Nonsense_Mutation_p.W130*|KIAA1715_uc010zes.1_Intron|KIAA1715_uc002ukd.1_Intron|KIAA1715_uc010zet.1_RNA	NM_030650	NP_085153	Q9C0E8	LNP_HUMAN	Lunapark	64	Helical; (Potential).					integral to membrane	protein binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0793)			AGGAAGATACCACAAATATAC	0.308												
EVX2	344191	broad.mit.edu	37	2	176948405	176948405	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:176948405T>C	uc010zeu.1	-	1	286	c.100A>G	c.(100-102)AAT>GAT	p.N34D		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	34						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		AGCACAGCATTGCCAGCCGAG	0.592												
HOXD9	3235	broad.mit.edu	37	2	176988303	176988303	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:176988303A>G	uc010zex.1	+	1	891	c.807A>G	c.(805-807)CAA>CAG	p.Q269Q		NM_014213	NP_055028	P28356	HXD9_HUMAN	homeobox D9	269			Missing.			nucleus	sequence-specific DNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.195)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		AGCAGCAGCAACTTGACCCAA	0.517												
HOXD4	3233	broad.mit.edu	37	2	177016792	177016792	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:177016792C>T	uc002uks.2	+	1	680	c.431C>T	c.(430-432)TCG>TTG	p.S144L		NM_014621	NP_055436	P09016	HXD4_HUMAN	homeobox D4	144						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00765)|Epithelial(96;0.105)	Colorectal(32;0.0224)|READ - Rectum adenocarcinoma(9;0.0556)		CACGTGAATTCGGGTAAGGCT	0.607												
MTX2	10651	broad.mit.edu	37	2	177193105	177193105	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:177193105A>G	uc002ukx.2	+	6	605	c.370A>G	c.(370-372)ACT>GCT	p.T124A	MTX2_uc002ukw.2_Missense_Mutation_p.T114A	NM_006554	NP_006545	O75431	MTX2_HUMAN	metaxin 2	124					protein targeting to mitochondrion	mitochondrial outer membrane				ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00365)|Epithelial(96;0.0654)|all cancers(119;0.181)			TATGCTGTTGACTGCAGAGGT	0.338												
NFE2L2	4780	broad.mit.edu	37	2	178098751	178098751	+	Silent	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:178098751T>G	uc002ulh.3	-	2	849	c.294A>C	c.(292-294)GGA>GGC	p.G98G	NFE2L2_uc002ulg.3_Silent_p.G82G|NFE2L2_uc010zfa.1_Silent_p.G82G|NFE2L2_uc002uli.3_Silent_p.G82G|NFE2L2_uc010fra.2_Silent_p.G82G|NFE2L2_uc010frb.2_Silent_p.G82G	NM_006164	NP_006155	Q16236	NF2L2_HUMAN	nuclear factor erythroid 2-like 2 isoform 1	98					transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			AGTTGGCAGATCCACTGGTTT	0.368			Mis		NSCLC|HNSCC					HNSCC(56;0.16)		
AGPS	8540	broad.mit.edu	37	2	178386079	178386079	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:178386079G>A	uc002ull.2	+	18	1827	c.1780G>A	c.(1780-1782)GTA>ATA	p.V594I	AGPS_uc010zfb.1_Missense_Mutation_p.V504I	NM_003659	NP_003650	O00116	ADAS_HUMAN	alkyldihydroxyacetone phosphate synthase	594					ether lipid biosynthetic process	peroxisomal matrix|peroxisomal membrane|plasma membrane	alkylglycerone-phosphate synthase activity|flavin adenine dinucleotide binding|oxidoreductase activity			ovary(2)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0018)|Epithelial(96;0.00919)|all cancers(119;0.0358)			CCCACTGACCGTATTTGAACA	0.333												
TTN	7273	broad.mit.edu	37	2	179395406	179395406	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179395406T>C	uc010zfg.1	-	307	98456	c.98232A>G	c.(98230-98232)TTA>TTG	p.L32744L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.L26439L|TTN_uc010zfi.1_Silent_p.L26372L|TTN_uc010zfj.1_Silent_p.L26247L|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33671							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTTGCCCTTAATACACTGC	0.428												
TTN	7273	broad.mit.edu	37	2	179399400	179399400	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179399400T>C	uc010zfg.1	-	307	94462	c.94238A>G	c.(94237-94239)TAC>TGC	p.Y31413C	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.Y25108C|TTN_uc010zfi.1_Missense_Mutation_p.Y25041C|TTN_uc010zfj.1_Missense_Mutation_p.Y24916C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32340							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGTGCATAGTATTCTGGGGC	0.463												
TTN	7273	broad.mit.edu	37	2	179410270	179410270	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179410270C>T	uc010zfg.1	-	293	88087	c.87863G>A	c.(87862-87864)CGT>CAT	p.R29288H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R22983H|TTN_uc010zfi.1_Missense_Mutation_p.R22916H|TTN_uc010zfj.1_Missense_Mutation_p.R22791H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30215							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGTTGACACGTGTCCAGCG	0.483												
TTN	7273	broad.mit.edu	37	2	179425761	179425761	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179425761A>G	uc010zfg.1	-	275	77618	c.77394T>C	c.(77392-77394)GTT>GTC	p.V25798V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V19493V|TTN_uc010zfi.1_Silent_p.V19426V|TTN_uc010zfj.1_Silent_p.V19301V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26725							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGACAACAATAACGTCTCGGA	0.443												
TTN	7273	broad.mit.edu	37	2	179426570	179426570	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179426570T>C	uc010zfg.1	-	275	76809	c.76585A>G	c.(76585-76587)ACC>GCC	p.T25529A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T19224A|TTN_uc010zfi.1_Missense_Mutation_p.T19157A|TTN_uc010zfj.1_Missense_Mutation_p.T19032A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26456							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.R25529C(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAGAGGTGGTTTCTTTCTTT	0.393												
TTN	7273	broad.mit.edu	37	2	179427717	179427717	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179427717G>A	uc010zfg.1	-	275	75662	c.75438C>T	c.(75436-75438)GGC>GGT	p.G25146G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.G18841G|TTN_uc010zfi.1_Silent_p.G18774G|TTN_uc010zfj.1_Silent_p.G18649G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26073							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGTGAGAATGCCTTCTGCCT	0.438												
TTN	7273	broad.mit.edu	37	2	179436182	179436182	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179436182T>C	uc010zfg.1	-	275	67197	c.66973A>G	c.(66973-66975)ACC>GCC	p.T22325A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T16020A|TTN_uc010zfi.1_Missense_Mutation_p.T15953A|TTN_uc010zfj.1_Missense_Mutation_p.T15828A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23252							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGAGGTAGGTACTCTTCCCA	0.458												
TTN	7273	broad.mit.edu	37	2	179440977	179440977	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179440977G>A	uc010zfg.1	-	275	62402	c.62178C>T	c.(62176-62178)ACC>ACT	p.T20726T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.T14421T|TTN_uc010zfi.1_Silent_p.T14354T|TTN_uc010zfj.1_Silent_p.T14229T|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21653							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTGAGGGCGGTTCCTGTGG	0.473												
TTN	7273	broad.mit.edu	37	2	179446390	179446390	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179446390T>C	uc010zfg.1	-	265	59125	c.58901A>G	c.(58900-58902)AAC>AGC	p.N19634S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.N13329S|TTN_uc010zfi.1_Missense_Mutation_p.N13262S|TTN_uc010zfj.1_Missense_Mutation_p.N13137S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20561							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTCACCCAGTTATCGGAGTC	0.498												
TTN	7273	broad.mit.edu	37	2	179483496	179483496	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179483496T>C	uc010zfg.1	-	200	39301	c.39077A>G	c.(39076-39078)TAC>TGC	p.Y13026C	TTN_uc010zfh.1_Missense_Mutation_p.Y6721C|TTN_uc010zfi.1_Missense_Mutation_p.Y6654C|TTN_uc010zfj.1_Missense_Mutation_p.Y6529C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13953							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCTTTGGGGTAGGCATCATA	0.408												
TTN	7273	broad.mit.edu	37	2	179497272	179497272	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179497272A>G	uc010zfg.1	-	184	35981	c.35757T>C	c.(35755-35757)AGT>AGC	p.S11919S	TTN_uc010zfh.1_Silent_p.S5614S|TTN_uc010zfi.1_Silent_p.S5547S|TTN_uc010zfj.1_Silent_p.S5422S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12846							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAGTTTGCCACTTGTGTGCT	0.333												
TTN	7273	broad.mit.edu	37	2	179540660	179540660	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179540660G>A	uc010zfg.1	-	144	30846	c.30622C>T	c.(30622-30624)CCC>TCC	p.P10208S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P6869S|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11135							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGCAGGGGGAGCCTCCTCT	0.363												
TTN	7273	broad.mit.edu	37	2	179553404	179553404	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179553404C>A	uc010zfg.1	-	123	28689	c.28465G>T	c.(28465-28467)GTA>TTA	p.V9489L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.V6150L|TTN_uc010fre.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10416							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATTATATACCTTCGTGCCGC	0.393												
TTN	7273	broad.mit.edu	37	2	179575918	179575918	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179575918T>C	uc010zfg.1	-	94	24537	c.24313A>G	c.(24313-24315)ACA>GCA	p.T8105A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.T4766A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9032							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAAAATGATGTTTGTACATTT	0.433												
TTN	7273	broad.mit.edu	37	2	179593250	179593250	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179593250C>G	uc010zfg.1	-	63	15895	c.15671G>C	c.(15670-15672)TGT>TCT	p.C5224S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.C1885S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6151							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAGGCATCACAGCTACTGCT	0.398												
TTN	7273	broad.mit.edu	37	2	179616447	179616447	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179616447A>G	uc002unb.2	-	46	10904	c.10680T>C	c.(10678-10680)CAT>CAC	p.H3560H	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGAAGAGTGATGGTGTAAAT	0.413												
TTN	7273	broad.mit.edu	37	2	179640599	179640599	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179640599G>A	uc010zfg.1	-	28	6216	c.5992C>T	c.(5992-5994)CGC>TGC	p.R1998C	TTN_uc010zfh.1_Missense_Mutation_p.R1952C|TTN_uc010zfi.1_Missense_Mutation_p.R1952C|TTN_uc010zfj.1_Missense_Mutation_p.R1952C|TTN_uc002unb.2_Missense_Mutation_p.R1998C|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1998							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATTTACTGCGCAGCTCTTCC	0.453												
TTN	7273	broad.mit.edu	37	2	179659647	179659647	+	Splice_Site	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179659647A>C	uc010zfg.1	-	7	1469	c.1245_splice	c.e7+1	p.E415_splice	TTN_uc010zfh.1_Splice_Site_p.E415_splice|TTN_uc010zfi.1_Splice_Site_p.E415_splice|TTN_uc010zfj.1_Splice_Site_p.E415_splice|TTN_uc002unb.2_Splice_Site_p.E415_splice|TTN_uc010frg.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A								ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTGACAGTACCTCTTTAGC	0.483												
SESTD1	91404	broad.mit.edu	37	2	179981458	179981458	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179981458G>A	uc002uni.3	-	15	1734	c.1584C>T	c.(1582-1584)GGC>GGT	p.G528G	SESTD1_uc002unh.3_5'UTR	NM_178123	NP_835224	Q86VW0	SESD1_HUMAN	SEC14 and spectrin domains 1	528	Spectrin 3.				regulation of calcium ion transport via voltage-gated calcium channel activity		phosphatidic acid binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0344)|Epithelial(96;0.0531)|all cancers(119;0.147)			GAGCATCATCGCCCAATCTGA	0.403												
UBE2E3	10477	broad.mit.edu	37	2	181927574	181927574	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:181927574G>A	uc002unq.1	+	7	802	c.583G>A	c.(583-585)GAC>AAC	p.D195N	UBE2E3_uc002unr.1_Missense_Mutation_p.D195N|UBE2E3_uc010fri.1_Missense_Mutation_p.D195N	NM_182678	NP_872619	Q969T4	UB2E3_HUMAN	ubiquitin-conjugating enzyme E2E 3	195					protein K11-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|regulation of growth	cytoplasm|nucleolus	ATP binding|protein binding|ubiquitin-protein ligase activity			ovary(1)	1						AGCAGAACACGACAGGATAGC	0.433												
ITGA4	3676	broad.mit.edu	37	2	182346369	182346369	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:182346369G>A	uc002unu.2	+	7	1562	c.799G>A	c.(799-801)GAA>AAA	p.E267K	ITGA4_uc010zfl.1_Missense_Mutation_p.E267K	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	267	FG-GAP 4.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	GCATACTACCGAAGTAGTCGG	0.373												
ITGA4	3676	broad.mit.edu	37	2	182358109	182358109	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:182358109A>G	uc002unu.2	+	11	1974	c.1211A>G	c.(1210-1212)AAT>AGT	p.N404S		NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	404	FG-GAP 6.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TATATTTACAATGGCCGTGCA	0.358												
FRZB	2487	broad.mit.edu	37	2	183730857	183730857	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:183730857A>G	uc002upa.1	-	1	642	c.424T>C	c.(424-426)TAC>CAC	p.Y142H		NM_001463	NP_001454	Q92765	SFRP3_HUMAN	frizzled-related protein precursor	142	FZ.				brain development|cochlea morphogenesis|gonad development|mammary gland involution|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cartilage development|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of hepatocyte differentiation|positive regulation of apoptosis|positive regulation of fat cell differentiation|skeletal system development|vasculature development|Wnt receptor signaling pathway	cytoplasm|extracellular space|membrane	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.109)|Epithelial(96;0.231)			CCCCTGTCGTACACTGGCAGC	0.632												
NCKAP1	10787	broad.mit.edu	37	2	183817966	183817966	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:183817966T>C	uc002upc.2	-	21	2649	c.2247A>G	c.(2245-2247)GTA>GTG	p.V749V	NCKAP1_uc002upb.2_Silent_p.V755V	NM_013436	NP_038464	Q9Y2A7	NCKP1_HUMAN	NCK-associated protein 1 isoform 1	749					apoptosis|central nervous system development	integral to membrane|lamellipodium membrane	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			TTGACTGGAGTACGGTCATGT	0.368												
DUSP19	142679	broad.mit.edu	37	2	183951825	183951825	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:183951825A>G	uc002upd.2	+	3	706	c.331A>G	c.(331-333)ACA>GCA	p.T111A	DUSP19_uc010frp.2_Intron|DUSP19_uc010zfr.1_RNA|DUSP19_uc002upe.2_Intron	NM_080876	NP_543152	Q8WTR2	DUS19_HUMAN	dual specificity phosphatase 19 isoform 1	111					JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|positive regulation of JNK cascade|positive regulation of JUN kinase activity	cytoplasm	JUN kinase phosphatase activity|MAP-kinase scaffold activity|mitogen-activated protein kinase kinase kinase binding|protein kinase activator activity|protein kinase inhibitor activity|protein tyrosine phosphatase activity			ovary(4)|pancreas(1)	5						CAGTGACTTTACATATAAGAG	0.313												
ZNF804A	91752	broad.mit.edu	37	2	185731181	185731181	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:185731181A>G	uc002uph.2	+	2	791	c.197A>G	c.(196-198)TAC>TGC	p.Y66C		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	66	C2H2-type.					intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GACAAGCAGTACTATAAGCAC	0.368												
ZNF804A	91752	broad.mit.edu	37	2	185803661	185803661	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:185803661A>G	uc002uph.2	+	4	4132	c.3538A>G	c.(3538-3540)AGC>GGC	p.S1180G		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1180						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TCTTCATCCTAGCCATCTGGC	0.512												
ZC3H15	55854	broad.mit.edu	37	2	187360023	187360023	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:187360023A>G	uc002upo.2	+	2	364	c.139A>G	c.(139-141)ACA>GCA	p.T47A		NM_018471	NP_060941	Q8WU90	ZC3HF_HUMAN	erythropoietin 4 immediate early response	47						cytoplasm|nucleolus|plasma membrane	nucleic acid binding|zinc ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Epithelial(96;0.0922)|all cancers(119;0.233)			CAAGGCTGTCACACATCAAGT	0.318												
FAM171B	165215	broad.mit.edu	37	2	187625956	187625956	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:187625956T>C	uc002ups.2	+	7	1241	c.1129T>C	c.(1129-1131)TAT>CAT	p.Y377H	FAM171B_uc002upr.1_Missense_Mutation_p.Y377H|FAM171B_uc002upt.2_5'Flank	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	377	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						ACTACTTTGTTATTGCAGGTA	0.318												
COL3A1	1281	broad.mit.edu	37	2	189873812	189873812	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:189873812A>G	uc002uqj.1	+	48	3805	c.3688A>G	c.(3688-3690)AAC>GAC	p.N1230D		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1230					axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TTTCAAAATCAACACCGATGA	0.458												
ANKAR	150709	broad.mit.edu	37	2	190608058	190608058	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:190608058C>T	uc002uqw.1	+	20	3655	c.3655C>T	c.(3655-3657)CGC>TGC	p.R1219C	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqx.1_RNA|ANKAR_uc002uqy.1_Intron	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	1290						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			AAATGCTTTCCGCATCCTATT	0.358												
SDPR	8436	broad.mit.edu	37	2	192700728	192700728	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:192700728G>A	uc002utb.2	-	2	1529	c.1199C>T	c.(1198-1200)GCG>GTG	p.A400V		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	400						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GGATGTTAGCGCGTAGCTACC	0.607												
TMEFF2	23671	broad.mit.edu	37	2	192818525	192818525	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:192818525T>C	uc002utc.2	-	9	1302	c.908A>G	c.(907-909)AAG>AGG	p.K303R		NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two	303	Required for shedding.|Extracellular (Potential).					extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			ACTGTAGTCCTTTTTTTCACA	0.398												
SLC39A10	57181	broad.mit.edu	37	2	196593047	196593047	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:196593047T>C	uc002utg.3	+	9	2525	c.2311T>C	c.(2311-2313)TTC>CTC	p.F771L	SLC39A10_uc002uth.3_Missense_Mutation_p.F771L|SLC39A10_uc010zgp.1_Missense_Mutation_p.F321L	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	771	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			TGCAGGCATGTTCCTCTATGT	0.413												
DNAH7	56171	broad.mit.edu	37	2	196640613	196640613	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:196640613T>C	uc002utj.3	-	60	11260	c.11159A>G	c.(11158-11160)CAG>CGG	p.Q3720R	DNAH7_uc002uti.3_Missense_Mutation_p.Q203R	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3720					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AGTTTCTGACTGATCCTTAGT	0.468												
DNAH7	56171	broad.mit.edu	37	2	196746539	196746539	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:196746539C>A	uc002utj.3	-	36	6042	c.5941G>T	c.(5941-5943)GGG>TGG	p.G1981W		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1981	AAA 3 (By similarity).|ATP (Potential).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACACTTTTCCCAGTTCCTGTT	0.363												
DNAH7	56171	broad.mit.edu	37	2	196765042	196765042	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:196765042G>A	uc002utj.3	-	28	4613	c.4512C>T	c.(4510-4512)GCC>GCT	p.A1504A		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1504	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTGACTTCACGGCTCTCATTC	0.423												
DNAH7	56171	broad.mit.edu	37	2	196825620	196825620	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:196825620A>G	uc002utj.3	-	18	2356	c.2255T>C	c.(2254-2256)GTA>GCA	p.V752A		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	752	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTGAGGATATACAGATGGTAG	0.353												
STK17B	9262	broad.mit.edu	37	2	197004484	197004484	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:197004484T>C	uc002utk.2	-	7	1020	c.696A>G	c.(694-696)ACA>ACG	p.T232T	STK17B_uc010fsh.2_Silent_p.T232T	NM_004226	NP_004217	O94768	ST17B_HUMAN	serine/threonine kinase 17B	232	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity			lung(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.141)			CAAATGGTGATGTGTGAGTTA	0.303												
STK17B	9262	broad.mit.edu	37	2	197021224	197021224	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:197021224G>A	uc002utk.2	-	3	598	c.274C>T	c.(274-276)CGT>TGT	p.R92C	STK17B_uc010fsh.2_Missense_Mutation_p.R92C	NM_004226	NP_004217	O94768	ST17B_HUMAN	serine/threonine kinase 17B	92	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity			lung(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.141)			TTAATAACACGGGGACAAGAC	0.328												
HECW2	57520	broad.mit.edu	37	2	197298107	197298107	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:197298107C>T	uc002utm.1	-	2	224	c.41G>A	c.(40-42)CGT>CAT	p.R14H		NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	14					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GGGATTTCGACGCCTCACAAA	0.557												
GTF3C3	9330	broad.mit.edu	37	2	197643670	197643670	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:197643670A>G	uc002uts.2	-	10	1430	c.1340T>C	c.(1339-1341)CTT>CCT	p.L447P	GTF3C3_uc010zgu.1_Intron|GTF3C3_uc002utt.3_Missense_Mutation_p.L122P	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	447	TPR 7.					transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						AGAGCAAACAAGAGCACTGAG	0.418												
GTF3C3	9330	broad.mit.edu	37	2	197662543	197662543	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:197662543G>T	uc002uts.2	-	2	282	c.192C>A	c.(190-192)TCC>TCA	p.S64S	GTF3C3_uc010zgu.1_Silent_p.S64S|GTF3C3_uc002utu.2_Silent_p.S64S	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	64						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						CTTTGTCTTGGGATTTGGTAG	0.348												
SF3B1	23451	broad.mit.edu	37	2	198268397	198268397	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:198268397A>G	uc002uue.2	-	12	1679	c.1631T>C	c.(1630-1632)CTT>CCT	p.L544P		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	544	Interaction with SF3B14.|HEAT 1.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TTGATCCTCAAGTGTAGGAGA	0.403												
MOBKL3	25843	broad.mit.edu	37	2	198405143	198405143	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:198405143T>A	uc002uun.3	+	5	376	c.336T>A	c.(334-336)GCT>GCA	p.A112A	MOBKL3_uc002uum.3_Silent_p.A80A|MOBKL3_uc010fsn.2_Silent_p.A91A|MOBKL3_uc010fso.2_Silent_p.A13A|MOBKL3_uc010zgz.1_Silent_p.A13A	NM_015387	NP_056202	Q9Y3A3	MOBL3_HUMAN	Mps One Binder kinase activator-like 3 isoform	112					transport	Golgi cisterna membrane|perinuclear region of cytoplasm	metal ion binding|protein binding				0			Epithelial(96;0.225)			TTTGTGCAGCTCATAAAACTC	0.294												
PLCL1	5334	broad.mit.edu	37	2	198953591	198953591	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:198953591G>A	uc010fsp.2	+	3	3016	c.2725G>A	c.(2725-2727)GTG>ATG	p.V909M	PLCL1_uc002uuv.3_Missense_Mutation_p.V830M	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	909	Potential.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	GAATGCAATCGTGTCTATTAA	0.453												
PLCL1	5334	broad.mit.edu	37	2	198968586	198968586	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:198968586G>T	uc010fsp.2	+	5	3322	c.3031G>T	c.(3031-3033)GCA>TCA	p.A1011S	PLCL1_uc002uuv.3_Missense_Mutation_p.A932S	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	1011					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	TAATTTGGGGGCAAAAGAAGG	0.378												
SPATS2L	26010	broad.mit.edu	37	2	201304024	201304024	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:201304024A>C	uc002uvn.3	+	7	977	c.625A>C	c.(625-627)AAG>CAG	p.K209Q	SPATS2L_uc010fst.2_Missense_Mutation_p.K209Q|SPATS2L_uc002uvo.3_Missense_Mutation_p.K149Q|SPATS2L_uc002uvp.3_Missense_Mutation_p.K209Q|SPATS2L_uc002uvq.3_Intron|SPATS2L_uc002uvr.3_Missense_Mutation_p.K209Q|SPATS2L_uc010zhc.1_Missense_Mutation_p.K239Q	NM_015535	NP_056350	Q9NUQ6	SPS2L_HUMAN	SPATS2-like protein isoform a	209						cytoplasm|nucleolus				ovary(2)|pancreas(1)	3						TCTTGAAATAAAGCCAGATGA	0.423												
SPATS2L	26010	broad.mit.edu	37	2	201332111	201332111	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:201332111G>A	uc002uvn.3	+	10	1298	c.946G>A	c.(946-948)GCA>ACA	p.A316T	SPATS2L_uc010fst.2_Missense_Mutation_p.A316T|SPATS2L_uc002uvo.3_Missense_Mutation_p.A256T|SPATS2L_uc002uvp.3_Missense_Mutation_p.A316T|SPATS2L_uc002uvq.3_Missense_Mutation_p.A247T|SPATS2L_uc002uvr.3_Missense_Mutation_p.A316T|SPATS2L_uc010zhc.1_Missense_Mutation_p.A346T	NM_015535	NP_056350	Q9NUQ6	SPS2L_HUMAN	SPATS2-like protein isoform a	316	Potential.					cytoplasm|nucleolus				ovary(2)|pancreas(1)	3						CGAACTCAGGGCAGAAATTAA	0.473												
NDUFB3	4709	broad.mit.edu	37	2	201950221	201950221	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:201950221T>C	uc002uwx.3	+	3	503	c.180T>C	c.(178-180)AGT>AGC	p.S60S		NM_002491	NP_002482	O43676	NDUB3_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	60					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0					NADH(DB00157)	TTGCAAAGAGTGTTTCCTTTT	0.358												
STRADB	55437	broad.mit.edu	37	2	202344807	202344807	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:202344807A>G	uc002uyd.3	+	12	1531	c.1166A>G	c.(1165-1167)AAC>AGC	p.N389S		NM_018571	NP_061041	Q9C0K7	STRAB_HUMAN	STE20-related kinase adaptor beta	389					activation of protein kinase activity|cell cycle arrest|insulin receptor signaling pathway|protein export from nucleus|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|protein binding|protein kinase activity			skin(2)|stomach(1)|lung(1)	4						CCTGCTTATAACAAGCCATCA	0.378												
CYP20A1	57404	broad.mit.edu	37	2	204161589	204161589	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:204161589A>G	uc002uzv.3	+	13	1969	c.1347A>G	c.(1345-1347)TCA>TCG	p.S449S	CYP20A1_uc002uzx.3_Silent_p.S347S|CYP20A1_uc010zif.1_Silent_p.S457S|CYP20A1_uc002uzy.3_Silent_p.S347S|CYP20A1_uc002uzw.3_RNA|CYP20A1_uc010ftw.2_Silent_p.S179S	NM_177538	NP_803882	Q6UW02	CP20A_HUMAN	cytochrome P450, family 20, subfamily A,	449						integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0						TGGTAACATCATCAAGGGAAG	0.333												
RAPH1	65059	broad.mit.edu	37	2	204354576	204354576	+	Missense_Mutation	SNP	C	C	T	rs145036827	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:204354576C>T	uc002vad.2	-	4	688	c.463G>A	c.(463-465)GAC>AAC	p.D155N	RAPH1_uc002vae.2_Missense_Mutation_p.D155N|RAPH1_uc002vaf.2_Missense_Mutation_p.D155N	NM_213589	NP_998754	Q70E73	RAPH1_HUMAN	Ras association and pleckstrin homology domains	155					cell-matrix adhesion|signal transduction	cytoplasm|cytoskeleton|filopodium|lamellipodium|nucleus|plasma membrane				ovary(3)|breast(3)|central_nervous_system(2)|lung(1)|skin(1)	10						GCAGTGACGTCGTCCAAGGAG	0.443												
NRP2	8828	broad.mit.edu	37	2	206580934	206580934	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:206580934T>A	uc002vaw.2	+	3	1060	c.269T>A	c.(268-270)ATT>AAT	p.I90N	NRP2_uc002vat.2_Missense_Mutation_p.I90N|NRP2_uc002vau.2_Missense_Mutation_p.I90N|NRP2_uc002vav.2_Missense_Mutation_p.I90N|NRP2_uc002vax.2_Missense_Mutation_p.I90N|NRP2_uc002vay.2_Missense_Mutation_p.I90N|NRP2_uc010fud.2_Missense_Mutation_p.I90N	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	90	Extracellular (Potential).|CUB 1.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TTTATCGAGATTCGGGATGGG	0.547												
NRP2	8828	broad.mit.edu	37	2	206581054	206581054	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:206581054G>A	uc002vaw.2	+	3	1180	c.389G>A	c.(388-390)CGG>CAG	p.R130Q	NRP2_uc002vat.2_Missense_Mutation_p.R130Q|NRP2_uc002vau.2_Missense_Mutation_p.R130Q|NRP2_uc002vav.2_Missense_Mutation_p.R130Q|NRP2_uc002vax.2_Missense_Mutation_p.R130Q|NRP2_uc002vay.2_Missense_Mutation_p.R130Q|NRP2_uc010fud.2_Missense_Mutation_p.R130Q	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	130	Extracellular (Potential).|CUB 1.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GACTACGCCCGGCAGGGGGCA	0.612												
ZDBF2	57683	broad.mit.edu	37	2	207173178	207173178	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:207173178T>C	uc002vbp.2	+	5	4176	c.3926T>C	c.(3925-3927)CTT>CCT	p.L1309P		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1309							nucleic acid binding|zinc ion binding			ovary(3)	3						GAAATAAATCTTTTGAGGGAG	0.353												
ADAM23	8745	broad.mit.edu	37	2	207426927	207426927	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:207426927T>C	uc002vbq.2	+	13	1478	c.1255T>C	c.(1255-1257)TAT>CAT	p.Y419H	ADAM23_uc010ziv.1_RNA	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	419	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		TGAAAAACAGTATGGTCTTCC	0.413												
CCNYL1	151195	broad.mit.edu	37	2	208607011	208607011	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:208607011T>C	uc002vci.2	+	5	788	c.431T>C	c.(430-432)GTT>GCT	p.V144A	CCNYL1_uc002vch.2_Missense_Mutation_p.V125A	NM_001142300	NP_001135772	Q8N7R7	CCYL1_HUMAN	cyclin Y-like 1 isoform 1	195	Cyclin N-terminal.				regulation of cyclin-dependent protein kinase activity		protein kinase binding				0				LUSC - Lung squamous cell carcinoma(261;0.0731)|Epithelial(149;0.139)|Lung(261;0.14)		TACAGATTTGTTCGTACTCTT	0.338												
CRYGC	1420	broad.mit.edu	37	2	208994373	208994373	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:208994373C>T	uc002vco.3	-	2	82	c.44G>A	c.(43-45)CGC>CAC	p.R15H		NM_020989	NP_066269	P07315	CRGC_HUMAN	crystallin, gamma C	15	Beta/gamma crystallin 'Greek key' 1.				visual perception	cytoplasm|nucleus	protein binding|structural constituent of eye lens				0				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.0858)|Lung(261;0.133)		TTCGTAGCTGCGGCCCTGGAA	0.522												
PIKFYVE	200576	broad.mit.edu	37	2	209150475	209150475	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:209150475T>C	uc002vcz.2	+	6	797	c.639T>C	c.(637-639)TGT>TGC	p.C213C	PIKFYVE_uc010fun.1_5'UTR|PIKFYVE_uc002vcy.1_Silent_p.C213C|PIKFYVE_uc002vcv.2_Silent_p.C116C|PIKFYVE_uc002vcw.2_Silent_p.C213C|PIKFYVE_uc002vcx.2_Silent_p.C127C	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	213	FYVE-type.				cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						GCACATATTGTAGAAAAATAG	0.358												
PIKFYVE	200576	broad.mit.edu	37	2	209200094	209200094	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:209200094G>A	uc002vcz.2	+	25	4365	c.4207G>A	c.(4207-4209)GCC>ACC	p.A1403T	PIKFYVE_uc002vcy.1_Missense_Mutation_p.A1347T	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1403					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						TAAGCGTCAGGCCCCATTAAA	0.343												
MAP2	4133	broad.mit.edu	37	2	210560125	210560125	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:210560125C>T	uc002vde.1	+	7	3479	c.3231C>T	c.(3229-3231)GAC>GAT	p.D1077D	MAP2_uc002vdc.1_Silent_p.D1077D|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Silent_p.D1073D	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1077					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	CTACACAGGACATGACCCCCT	0.453												
MAP2	4133	broad.mit.edu	37	2	210594919	210594919	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:210594919A>C	uc002vde.1	+	15	5530	c.5282A>C	c.(5281-5283)AAG>ACG	p.K1761T	MAP2_uc002vdd.1_Missense_Mutation_p.K493T|MAP2_uc002vdf.1_Missense_Mutation_p.K436T|MAP2_uc002vdg.1_Missense_Mutation_p.K405T|MAP2_uc002vdh.1_Missense_Mutation_p.K462T|MAP2_uc002vdi.1_Missense_Mutation_p.K1757T	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1761					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	GACAGCCAAAAGTTGAACTTC	0.507												
LANCL1	10314	broad.mit.edu	37	2	211319864	211319864	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:211319864T>C	uc010zjh.1	-	4	449	c.374A>G	c.(373-375)AAC>AGC	p.N125S	LANCL1_uc002ved.2_Missense_Mutation_p.N125S|LANCL1_uc010fuq.2_Missense_Mutation_p.N125S	NM_001136574	NP_001130046	O43813	LANC1_HUMAN	lanthionine synthetase C-like protein 1	125						cytoplasm|integral to plasma membrane|microtubule cytoskeleton|nucleus	catalytic activity|G-protein coupled receptor activity|glutathione binding|low-density lipoprotein particle receptor binding|SH3 domain binding|zinc ion binding				0				Epithelial(149;0.00562)|Lung(261;0.0468)|LUSC - Lung squamous cell carcinoma(261;0.0495)|all cancers(144;0.0569)		CTTCTCATTGTTCATCTTGTG	0.438												
CPS1	1373	broad.mit.edu	37	2	211502472	211502472	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:211502472T>A	uc002vee.3	+	22	2866	c.2734T>A	c.(2734-2736)TTC>ATC	p.F912I	CPS1_uc010fur.2_Missense_Mutation_p.F918I|CPS1_uc010fus.2_Missense_Mutation_p.F461I	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	912				F -> L (in Ref. 6; CAE45707).	carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GGAGATTGGGTTCTCAGATAA	0.408												
ERBB4	2066	broad.mit.edu	37	2	212989574	212989574	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:212989574T>C	uc002veg.1	-	2	235	c.137A>G	c.(136-138)TAC>TGC	p.Y46C	ERBB4_uc002veh.1_Missense_Mutation_p.Y46C|ERBB4_uc010zji.1_Missense_Mutation_p.Y46C|ERBB4_uc010zjj.1_Missense_Mutation_p.Y46C|ERBB4_uc010fut.1_Missense_Mutation_p.Y46C	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	46	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CAAGGCTCGGTACTGCTGTTC	0.478										TSP Lung(8;0.080)		
ERBB4	2066	broad.mit.edu	37	2	212989624	212989624	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:212989624A>G	uc002veg.1	-	2	185	c.87T>C	c.(85-87)TGT>TGC	p.C29C	ERBB4_uc002veh.1_Silent_p.C29C|ERBB4_uc010zji.1_Silent_p.C29C|ERBB4_uc010zjj.1_Silent_p.C29C|ERBB4_uc010fut.1_Silent_p.C29C	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	29	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CCGTTCCTGCACACACTGCAA	0.423										TSP Lung(8;0.080)		
VWC2L	402117	broad.mit.edu	37	2	215440456	215440456	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:215440456A>G	uc002vet.2	+	4	711	c.581A>G	c.(580-582)GAA>GGA	p.E194G	VWC2L_uc010zjl.1_3'UTR	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	194						extracellular region					0						AAAGTGGACGAATGTAACATC	0.448												
ABCA12	26154	broad.mit.edu	37	2	215813766	215813766	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:215813766G>A	uc002vew.2	-	46	7180	c.6960C>T	c.(6958-6960)ACC>ACT	p.T2320T	ABCA12_uc002vev.2_Silent_p.T2002T|ABCA12_uc010zjn.1_Silent_p.T1247T	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2320	ABC transporter 2.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TTTCATACCCGGTCTTATTTC	0.333												
FN1	2335	broad.mit.edu	37	2	216240093	216240093	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:216240093G>A	uc002vfa.2	-	38	6267	c.6001C>T	c.(6001-6003)CGT>TGT	p.R2001C	FN1_uc002vfb.2_Missense_Mutation_p.R1820C|FN1_uc002vfc.2_Missense_Mutation_p.R1820C|FN1_uc002vfd.2_Missense_Mutation_p.R2001C|FN1_uc002vfe.2_Missense_Mutation_p.R1910C|FN1_uc002vff.2_Missense_Mutation_p.R1910C|FN1_uc002vfg.2_Missense_Mutation_p.R1820C|FN1_uc002vfh.2_Missense_Mutation_p.R1820C|FN1_uc002vfi.2_Missense_Mutation_p.R2001C|FN1_uc002vfj.2_Missense_Mutation_p.R1911C|FN1_uc002vez.2_Missense_Mutation_p.R195C|FN1_uc010zjp.1_Missense_Mutation_p.R538C|FN1_uc002vfk.1_RNA|FN1_uc010fva.1_RNA|FN1_uc010fvb.1_RNA|FN1_uc010fvc.1_Missense_Mutation_p.R363C|FN1_uc010fvd.1_Missense_Mutation_p.R92C	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	1910	Binds to FBLN1.|Heparin-binding 2.|Fibronectin type-III 15.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCCAGGAAACGCAGGTTGGAT	0.488												
TNS1	7145	broad.mit.edu	37	2	218682425	218682425	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:218682425A>G	uc002vgt.2	-	24	4716	c.4318T>C	c.(4318-4320)TAC>CAC	p.Y1440H	TNS1_uc002vgr.2_Missense_Mutation_p.Y1427H|TNS1_uc002vgs.2_Missense_Mutation_p.Y1419H|TNS1_uc010zjv.1_Missense_Mutation_p.Y1419H	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1440						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		GGCATGGAGTACTTGGAGAAG	0.498												
ZNF142	7701	broad.mit.edu	37	2	219508394	219508394	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:219508394G>A	uc002vin.2	-	8	3281	c.2845C>T	c.(2845-2847)CCA>TCA	p.P949S	ZNF142_uc002vil.2_Missense_Mutation_p.P910S|ZNF142_uc010fvt.2_Missense_Mutation_p.P786S|ZNF142_uc002vim.2_Missense_Mutation_p.P786S	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	949					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GTTTCTTCTGGCTCCCTGGGA	0.557												
BCS1L	617	broad.mit.edu	37	2	219526551	219526551	+	Missense_Mutation	SNP	G	G	A	rs143968821		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:219526551G>A	uc002vio.2	+	4	948	c.530G>A	c.(529-531)CGT>CAT	p.R177H	ZNF142_uc002vin.2_5'Flank|ZNF142_uc010fvt.2_5'Flank|ZNF142_uc002vim.2_5'Flank|BCS1L_uc002vip.2_Missense_Mutation_p.R177H|BCS1L_uc002viq.2_Missense_Mutation_p.R177H|BCS1L_uc010fvu.2_Missense_Mutation_p.R177H|BCS1L_uc010fvv.2_Missense_Mutation_p.R177H|BCS1L_uc002vir.2_Missense_Mutation_p.R177H|BCS1L_uc002vis.2_Missense_Mutation_p.R177H	NM_004328	NP_004319	Q9Y276	BCS1_HUMAN	BCS1-like	177	Mitochondrial matrix (Potential).				mitochondrial respiratory chain complex I assembly|mitochondrial respiratory chain complex III assembly|mitochondrial respiratory chain complex IV assembly	integral to membrane|mitochondrial respiratory chain complex III	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Renal(207;0.0474)		Epithelial(149;7.12e-07)|all cancers(144;0.000131)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCTGAATGGCGTCCCTTTGGC	0.537												
STK36	27148	broad.mit.edu	37	2	219554645	219554645	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:219554645A>G	uc002viu.2	+	13	1890	c.1624A>G	c.(1624-1626)ACC>GCC	p.T542A	STK36_uc002viv.2_Missense_Mutation_p.T542A	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	542					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		CTTTGCCTGTACCTTCAATCT	0.488												
TTLL4	9654	broad.mit.edu	37	2	219602475	219602475	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:219602475G>T	uc002viy.2	+	3	446	c.76G>T	c.(76-78)GGC>TGC	p.G26C	TTLL4_uc010zkl.1_Intron|TTLL4_uc010fvx.2_Missense_Mutation_p.G26C	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	26					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		TGGTCCCTCAGGCACAGTACC	0.572												
TTLL4	9654	broad.mit.edu	37	2	219603313	219603313	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:219603313A>G	uc002viy.2	+	3	1284	c.914A>G	c.(913-915)TAT>TGT	p.Y305C	TTLL4_uc010zkl.1_Missense_Mutation_p.Y140C|TTLL4_uc010fvx.2_Missense_Mutation_p.Y305C	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	305					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		TCTTCCTGGTATAACCGGAAT	0.527												
PRKAG3	53632	broad.mit.edu	37	2	219694778	219694778	+	Missense_Mutation	SNP	G	G	A	rs141188865		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:219694778G>A	uc002vjb.1	-	4	575	c.556C>T	c.(556-558)CGC>TGC	p.R186C	PRKAG3_uc010zkn.1_RNA|PRKAG3_uc010fvy.1_Missense_Mutation_p.R186C|PRKAG3_uc010zko.1_Missense_Mutation_p.R182C	NM_017431	NP_059127	Q9UGI9	AAKG3_HUMAN	AMP-activated protein kinase, non-catalytic	186					cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|intracellular protein kinase cascade|regulation of fatty acid oxidation	cytosol	AMP-activated protein kinase activity|protein kinase binding			ovary(1)|lung(1)	2		Renal(207;0.0474)		Epithelial(149;4.35e-07)|all cancers(144;8.96e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGCATGAAGCGCATGTAGATC	0.617												
WNT10A	80326	broad.mit.edu	37	2	219746929	219746929	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:219746929G>A	uc002vjd.1	+	2	623	c.160G>A	c.(160-162)GTG>ATG	p.V54M		NM_025216	NP_079492	Q9GZT5	WN10A_HUMAN	wingless-type MMTV integration site family,	54					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|female gonad development|hair follicle morphogenesis|odontogenesis|regulation of odontogenesis of dentine-containing tooth|sebaceous gland development|skin development|tongue development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			lung(1)|skin(1)	2		Renal(207;0.0474)		Epithelial(149;4.26e-07)|all cancers(144;8.8e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCCGGAGCCCGTGCTCAATGC	0.617												
NHEJ1	79840	broad.mit.edu	37	2	219942915	219942915	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:219942915G>A	uc002vjp.3	-	6	748	c.602C>T	c.(601-603)GCA>GTA	p.A201V	NHEJ1_uc002vjq.3_RNA	NM_024782	NP_079058	Q9H9Q4	NHEJ1_HUMAN	nonhomologous end-joining factor 1	201					B cell differentiation|central nervous system development|DNA recombination|double-strand break repair via nonhomologous end joining|positive regulation of ligase activity|response to ionizing radiation|T cell differentiation	nonhomologous end joining complex|nucleus	DNA binding|identical protein binding			lung(1)	1		Renal(207;0.0915)		Epithelial(149;2.15e-06)|all cancers(144;0.000339)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0112)		AATGCTGCATGCCTCTGGCAG	0.483								Direct_reversal_of_damage|NHEJ				
ABCB6	10058	broad.mit.edu	37	2	220075831	220075831	+	Splice_Site	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:220075831C>A	uc002vkc.1	-	15	2246	c.1969_splice	c.e15-1	p.V657_splice	ABCB6_uc010fwe.1_Splice_Site_p.V611_splice	NM_005689	NP_005680	Q9NP58	ABCB6_HUMAN	ATP-binding cassette, sub-family B, member 6						cadmium ion transmembrane transport|cellular iron ion homeostasis|detoxification of cadmium ion|porphyrin biosynthetic process	ATP-binding cassette (ABC) transporter complex|Golgi apparatus|integral to mitochondrial outer membrane|plasma membrane|vacuolar membrane	ATP binding|efflux transmembrane transporter activity|heme binding|heme-transporting ATPase activity			breast(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;1.22e-06)|all cancers(144;0.000201)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCTGGGTCACCTAGGGCCAAA	0.423												
ABCB6	10058	broad.mit.edu	37	2	220078187	220078187	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:220078187A>G	uc002vkc.1	-	11	1970	c.1693T>C	c.(1693-1695)TTT>CTT	p.F565L	ABCB6_uc010fwe.1_Missense_Mutation_p.F519L	NM_005689	NP_005680	Q9NP58	ABCB6_HUMAN	ATP-binding cassette, sub-family B, member 6	565					cadmium ion transmembrane transport|cellular iron ion homeostasis|detoxification of cadmium ion|porphyrin biosynthetic process	ATP-binding cassette (ABC) transporter complex|Golgi apparatus|integral to mitochondrial outer membrane|plasma membrane|vacuolar membrane	ATP binding|efflux transmembrane transporter activity|heme binding|heme-transporting ATPase activity			breast(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;1.22e-06)|all cancers(144;0.000201)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGCAAGTCAAACATGTTCTCC	0.478												
ABCB6	10058	broad.mit.edu	37	2	220080754	220080754	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:220080754C>T	uc002vkc.1	-	5	1396	c.1119G>A	c.(1117-1119)GCG>GCA	p.A373A	ABCB6_uc010fwe.1_Silent_p.A327A|ABCB6_uc010zku.1_Intron	NM_005689	NP_005680	Q9NP58	ABCB6_HUMAN	ATP-binding cassette, sub-family B, member 6	373	ABC transmembrane type-1.				cadmium ion transmembrane transport|cellular iron ion homeostasis|detoxification of cadmium ion|porphyrin biosynthetic process	ATP-binding cassette (ABC) transporter complex|Golgi apparatus|integral to mitochondrial outer membrane|plasma membrane|vacuolar membrane	ATP binding|efflux transmembrane transporter activity|heme binding|heme-transporting ATPase activity			breast(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;1.22e-06)|all cancers(144;0.000201)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGCCCCGATCCGCGATCCGCA	0.682												
SPEG	10290	broad.mit.edu	37	2	220309422	220309422	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:220309422C>T	uc010fwg.2	+	2	436	c.436C>T	c.(436-438)CGC>TGC	p.R146C	SPEG_uc002vlm.2_RNA|SPEG_uc010fwh.1_5'UTR|SPEG_uc002vln.1_5'UTR	NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	146					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GGGAACCCAGCGCCTGGAGCT	0.627												
SPEG	10290	broad.mit.edu	37	2	220333749	220333749	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:220333749G>A	uc010fwg.2	+	12	3470	c.3470G>A	c.(3469-3471)CGG>CAG	p.R1157Q		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1157					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GAAGAGCCCCGGACAGCCGCC	0.687												
OBSL1	23363	broad.mit.edu	37	2	220416496	220416496	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:220416496T>C	uc010fwk.2	-	20	5495	c.5438A>G	c.(5437-5439)CAC>CGC	p.H1813R	hsa-mir-3132|MI0014152_5'Flank	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	1813	Ig-like 14.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		GCGAGGGGGGTGGCGGCACAT	0.692												
OBSL1	23363	broad.mit.edu	37	2	220428124	220428124	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:220428124T>C	uc010fwk.2	-	7	2690	c.2633A>G	c.(2632-2634)CAG>CGG	p.Q878R	OBSL1_uc010zli.1_5'Flank|OBSL1_uc010fwl.1_Missense_Mutation_p.Q353R|OBSL1_uc002vmi.2_Missense_Mutation_p.Q878R|OBSL1_uc002vmj.2_Missense_Mutation_p.Q465R	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	878	Ig-like 6.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		AGCGACGCACTGAAACTCGCC	0.667												
STK11IP	114790	broad.mit.edu	37	2	220476719	220476719	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:220476719G>A	uc002vml.2	+	19	2454	c.2411G>A	c.(2410-2412)CGG>CAG	p.R804Q		NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	804					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CACCGACTCCGGCTCTTCCTG	0.652												
SLC4A3	6508	broad.mit.edu	37	2	220502890	220502890	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:220502890G>A	uc002vmp.3	+	18	3040	c.2771G>A	c.(2770-2772)CGT>CAT	p.R924H	SLC4A3_uc002vmo.3_Missense_Mutation_p.R951H|SLC4A3_uc010fwm.2_Missense_Mutation_p.R474H	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	924	Cytoplasmic (Potential).|Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTCAAGGCTCGTCGCATCATC	0.602												
SLC4A3	6508	broad.mit.edu	37	2	220503505	220503505	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:220503505T>C	uc002vmp.3	+	19	3206	c.2937T>C	c.(2935-2937)CGT>CGC	p.R979R	SLC4A3_uc002vmo.3_Silent_p.R1006R|SLC4A3_uc010fwm.2_Silent_p.R529R	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	979	Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCAGTGCCCGTCCTTTCCCGC	0.607												
EPHA4	2043	broad.mit.edu	37	2	222298873	222298873	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:222298873A>G	uc002vmq.2	-	14	2527	c.2485T>C	c.(2485-2487)TCC>CCC	p.S829P	EPHA4_uc002vmr.2_Missense_Mutation_p.S829P|EPHA4_uc010zlm.1_Missense_Mutation_p.S770P|EPHA4_uc010zln.1_Missense_Mutation_p.S829P	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	829	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		TCTTGATTGGACATATCCCAA	0.413												
EPHA4	2043	broad.mit.edu	37	2	222428898	222428898	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:222428898A>G	uc002vmq.2	-	3	418	c.376T>C	c.(376-378)TAC>CAC	p.Y126H	EPHA4_uc002vmr.2_Missense_Mutation_p.Y126H|EPHA4_uc010zlm.1_Missense_Mutation_p.Y67H|EPHA4_uc010zln.1_Missense_Mutation_p.Y126H	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	126	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		GATTCATAGTAGTACAGGTTA	0.458												
WDFY1	57590	broad.mit.edu	37	2	224763705	224763705	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:224763705A>G	uc002vnq.2	-	6	619	c.568T>C	c.(568-570)TCA>CCA	p.S190P		NM_020830	NP_065881	Q8IWB7	WDFY1_HUMAN	WD repeat and FYVE domain containing 1	190	WD 4.					cytosol|early endosome|nucleus	1-phosphatidylinositol binding|zinc ion binding			lung(1)	1		all_lung(227;0.00682)|Lung NSC(271;0.00859)|Renal(207;0.0112)|all_hematologic(139;0.189)		Epithelial(121;5.34e-10)|all cancers(144;1.67e-07)|Lung(261;0.00807)|LUSC - Lung squamous cell carcinoma(224;0.00843)		GTGATGACTGAACACGTGTTC	0.418												
DOCK10	55619	broad.mit.edu	37	2	225740890	225740890	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:225740890T>C	uc010fwz.1	-	8	1035	c.796A>G	c.(796-798)ACC>GCC	p.T266A	DOCK10_uc002vob.2_Missense_Mutation_p.T260A|DOCK10_uc002vod.1_Missense_Mutation_p.T266A	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	266	PH.						GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		ACAAAATAGGTCAGATCATTC	0.398												
COL4A3	1285	broad.mit.edu	37	2	228121099	228121099	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:228121099A>G	uc002vom.1	+	17	1136	c.974A>G	c.(973-975)GAA>GGA	p.E325G	COL4A3_uc002von.1_Missense_Mutation_p.E325G|COL4A3_uc002voo.1_Missense_Mutation_p.E325G|COL4A3_uc002vop.1_Missense_Mutation_p.E325G|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	325	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		TTAATGGGTGAAGATGGCATT	0.448												
SLC19A3	80704	broad.mit.edu	37	2	228552887	228552887	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:228552887T>A	uc002vpi.2	-	5	1398	c.1309A>T	c.(1309-1311)ATT>TTT	p.I437F	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Missense_Mutation_p.I433F	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	437	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	CTTACCTGAATGCTGACTGGC	0.383												
SLC19A3	80704	broad.mit.edu	37	2	228563875	228563875	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:228563875A>G	uc002vpi.2	-	3	645	c.556T>C	c.(556-558)TTC>CTC	p.F186L	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Missense_Mutation_p.F182L	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	186	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	AAAAGTGAGAAAAGGAAAGCC	0.458												
TRIP12	9320	broad.mit.edu	37	2	230683187	230683187	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:230683187C>T	uc002vpw.1	-	8	1457	c.1348G>A	c.(1348-1350)GAT>AAT	p.D450N	TRIP12_uc002vpx.1_Missense_Mutation_p.D498N|TRIP12_uc002vpy.1_Missense_Mutation_p.D153N|TRIP12_uc010zlz.1_Intron|TRIP12_uc010fxh.1_Missense_Mutation_p.D456N	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	450					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		TGACTTTCATCACTGGCTTGC	0.368												
TRIP12	9320	broad.mit.edu	37	2	230723955	230723955	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:230723955C>T	uc002vpw.1	-	3	543	c.434G>A	c.(433-435)CGG>CAG	p.R145Q	TRIP12_uc002vpx.1_Missense_Mutation_p.R187Q|TRIP12_uc002vpy.1_Intron|TRIP12_uc010zlz.1_RNA|TRIP12_uc010fxh.1_Missense_Mutation_p.R145Q	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	145					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		TTTCTGACTCCGTGAACCGCC	0.483												
SP140L	93349	broad.mit.edu	37	2	231254679	231254679	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:231254679T>C	uc010fxm.1	+	11	996	c.905T>C	c.(904-906)TTA>TCA	p.L302S	SP140L_uc010fxo.1_Intron	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	302	SAND.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						CAGGCTCCTTTACTTCCAGTG	0.423												
SP100	6672	broad.mit.edu	37	2	231331847	231331847	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:231331847A>G	uc002vqt.2	+	13	1349	c.1208A>G	c.(1207-1209)GAC>GGC	p.D403G	SP100_uc002vqs.2_Missense_Mutation_p.D403G|SP100_uc002vqu.1_Missense_Mutation_p.D403G|SP100_uc002vqq.1_Missense_Mutation_p.D403G|SP100_uc002vqr.1_Missense_Mutation_p.D378G|SP100_uc010zmc.1_Missense_Mutation_p.D378G|SP100_uc002vqv.1_Missense_Mutation_p.D367G	NM_003113	NP_003104	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 2	403					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		ATAGGACAAGACCACGACTTT	0.483												
PSMD1	5707	broad.mit.edu	37	2	231941799	231941799	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:231941799G>A	uc002vrn.1	+	9	1125	c.994G>A	c.(994-996)GAA>AAA	p.E332K	PSMD1_uc002vrm.1_Missense_Mutation_p.E332K|PSMD1_uc010fxu.1_Missense_Mutation_p.E196K	NM_002807	NP_002798	Q99460	PSMD1_HUMAN	proteasome 26S non-ATPase subunit 1	332					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding			ovary(1)|skin(1)	2		Ovarian(221;0.000626)|Medulloblastoma(418;0.0109)|Renal(207;0.0112)|Lung NSC(271;0.0538)|all_lung(227;0.0713)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;4e-26)|LUSC - Lung squamous cell carcinoma(224;0.0138)|Lung(119;0.0168)	Bortezomib(DB00188)	TTTAAGTGGTGAAATGGCTAT	0.299												
HTR2B	3357	broad.mit.edu	37	2	231973323	231973323	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:231973323T>C	uc002vro.2	-	4	1859	c.1354A>G	c.(1354-1356)ACC>GCC	p.T452A	PSMD1_uc002vrm.1_Intron|PSMD1_uc010fxu.1_Intron|PSMD1_uc002vrn.1_Intron|HTR2B_uc010fxv.2_Missense_Mutation_p.T385A	NM_000867	NP_000858	P41595	5HT2B_HUMAN	5-hydroxytryptamine (serotonin) receptor 2B	452	Cytoplasmic (By similarity).			T -> P (in Ref. 2; CAA85319).	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cardiac muscle hypertrophy|cellular response to calcium ion|cellular response to temperature stimulus|cGMP biosynthetic process|embryonic morphogenesis|ERK1 and ERK2 cascade|G-protein coupled receptor internalization|heart morphogenesis|intestine smooth muscle contraction|negative regulation of apoptosis|negative regulation of autophagy|neural crest cell migration|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|phosphorylation|positive regulation of cell division|positive regulation of cytokine production|positive regulation of cytokine secretion|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAP kinase activity|positive regulation of nitric-oxide synthase activity|protein kinase C signaling cascade|regulation of behavior|release of sequestered calcium ion into cytosol|response to drug|vasoconstriction	cytoplasm|integral to membrane|plasma membrane	calcium channel activity|drug binding|G-protein alpha-subunit binding|phosphatidylinositol phospholipase C activity|Ras GTPase activator activity|serotonin binding|serotonin receptor activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;4.48e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0141)	Chlorprothixene(DB01239)|Eletriptan(DB00216)|Fenfluramine(DB00574)|Methotrimeprazine(DB01403)|Minaprine(DB00805)|Quetiapine(DB01224)|Sumatriptan(DB00669)|Tegaserod(DB01079)|Triflupromazine(DB00508)	GACTGAATGGTTGAACTTCGG	0.403												
HTR2B	3357	broad.mit.edu	37	2	231973661	231973661	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:231973661G>T	uc002vro.2	-	4	1521	c.1016C>A	c.(1015-1017)CCC>CAC	p.P339H	PSMD1_uc002vrm.1_Intron|PSMD1_uc010fxu.1_Intron|PSMD1_uc002vrn.1_Intron|HTR2B_uc010fxv.2_Missense_Mutation_p.P272H	NM_000867	NP_000858	P41595	5HT2B_HUMAN	5-hydroxytryptamine (serotonin) receptor 2B	339	Helical; Name=6; (By similarity).				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cardiac muscle hypertrophy|cellular response to calcium ion|cellular response to temperature stimulus|cGMP biosynthetic process|embryonic morphogenesis|ERK1 and ERK2 cascade|G-protein coupled receptor internalization|heart morphogenesis|intestine smooth muscle contraction|negative regulation of apoptosis|negative regulation of autophagy|neural crest cell migration|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|phosphorylation|positive regulation of cell division|positive regulation of cytokine production|positive regulation of cytokine secretion|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAP kinase activity|positive regulation of nitric-oxide synthase activity|protein kinase C signaling cascade|regulation of behavior|release of sequestered calcium ion into cytosol|response to drug|vasoconstriction	cytoplasm|integral to membrane|plasma membrane	calcium channel activity|drug binding|G-protein alpha-subunit binding|phosphatidylinositol phospholipase C activity|Ras GTPase activator activity|serotonin binding|serotonin receptor activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;4.48e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0141)	Chlorprothixene(DB01239)|Eletriptan(DB00216)|Fenfluramine(DB00574)|Methotrimeprazine(DB01403)|Minaprine(DB00805)|Quetiapine(DB01224)|Sumatriptan(DB00669)|Tegaserod(DB01079)|Triflupromazine(DB00508)	AATAAAGAAGGGACACCACAT	0.393												
EFHD1	80303	broad.mit.edu	37	2	233527579	233527579	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:233527579G>C	uc002vtc.2	+	2	578	c.370G>C	c.(370-372)GCC>CCC	p.A124P	EFHD1_uc010fyf.2_Missense_Mutation_p.A28P|EFHD1_uc002vtd.2_Missense_Mutation_p.A12P	NM_025202	NP_079478	Q9BUP0	EFHD1_HUMAN	EF-hand domain family, member D1	124	EF-hand 1.						calcium ion binding|protein binding				0		all_hematologic(139;0.0123)|Acute lymphoblastic leukemia(138;0.0182)|Breast(86;0.0199)|Renal(207;0.025)		Epithelial(121;2.08e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00825)|Lung(119;0.0101)		GAAGCTGGGGGCCCCCCAGAC	0.602												
GIGYF2	26058	broad.mit.edu	37	2	233620987	233620987	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:233620987G>C	uc002vti.3	+	8	659	c.322G>C	c.(322-324)GGA>CGA	p.G108R	GIGYF2_uc010zmj.1_Missense_Mutation_p.G108R|GIGYF2_uc002vtg.2_Missense_Mutation_p.G108R|GIGYF2_uc002vtj.3_Missense_Mutation_p.G108R|GIGYF2_uc002vtk.3_Missense_Mutation_p.G108R|GIGYF2_uc002vth.3_Missense_Mutation_p.G108R|GIGYF2_uc010zmk.1_RNA	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	108	Poly-Gly.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		GACAGGACGAGGAGGAGGAGG	0.398												
NEU2	4759	broad.mit.edu	37	2	233897415	233897415	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:233897415G>A	uc010zmn.1	+	1	34	c.34G>A	c.(34-36)GTG>ATG	p.V12M		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	12							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		GAAGGAGAGCGTGTTCCAGTC	0.622												
AGAP1	116987	broad.mit.edu	37	2	236649676	236649676	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:236649676G>C	uc002vvs.2	+	4	975	c.380G>C	c.(379-381)GGC>GCC	p.G127A	AGAP1_uc002vvt.2_Missense_Mutation_p.G127A	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	127	Small GTPase-like.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						GATGAAGGGGGCCCCCCGGAG	0.488												
COL6A3	1293	broad.mit.edu	37	2	238257297	238257297	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:238257297C>T	uc002vwl.2	-	29	7174	c.6889G>A	c.(6889-6891)GGG>AGG	p.G2297R	COL6A3_uc002vwo.2_Missense_Mutation_p.G2091R|COL6A3_uc010znj.1_Missense_Mutation_p.G1690R|COL6A3_uc002vwp.1_Missense_Mutation_p.G118R	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2297	Triple-helical region.|Collagen-like 4.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CCGTCTCTCCCGTCATCTCCC	0.562												
COL6A3	1293	broad.mit.edu	37	2	238287506	238287506	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:238287506T>A	uc002vwl.2	-	6	2555	c.2270A>T	c.(2269-2271)GAC>GTC	p.D757V	COL6A3_uc002vwo.2_Missense_Mutation_p.D551V|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.D551V|COL6A3_uc002vwr.2_Missense_Mutation_p.D350V|COL6A3_uc010znk.1_Intron	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	757	VWFA 4.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CAAATAGGAGTCCTCAGACTG	0.572												
COL6A3	1293	broad.mit.edu	37	2	238303834	238303834	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:238303834A>G	uc002vwl.2	-	3	390	c.105T>C	c.(103-105)GGT>GGC	p.G35G	COL6A3_uc002vwo.2_Intron|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Intron|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Silent_p.G35G	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	35	Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CAGCAGCCGCACCATTTTTGA	0.338												
RBM44	375316	broad.mit.edu	37	2	238725821	238725821	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:238725821A>G	uc002vxi.3	+	3	394	c.262A>G	c.(262-264)ACT>GCT	p.T88A		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	87							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		GAGTCAAGATACTAACACAGA	0.328												
UBE2F	140739	broad.mit.edu	37	2	238925217	238925217	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:238925217A>G	uc002vxk.2	+	5	315	c.224A>G	c.(223-225)TAC>TGC	p.Y75C	UBE2F_uc010znn.1_Missense_Mutation_p.Y43C|UBE2F_uc002vxl.2_RNA|UBE2F_uc010zno.1_Intron|UBE2F_uc010znp.1_Missense_Mutation_p.Y75C|SCLY_uc002vxm.3_Intron	NM_080678	NP_542409	Q969M7	UBE2F_HUMAN	NEDD8-conjugating enzyme	75					protein neddylation		ATP binding|NEDD8 ligase activity|protein binding				0		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;6.7e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|Kidney(56;3.53e-09)|KIRC - Kidney renal clear cell carcinoma(57;9.79e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000136)|Lung(119;0.0126)|LUSC - Lung squamous cell carcinoma(224;0.0301)		GATGAGGGTTACTACCAGGGT	0.373												
SCLY	51540	broad.mit.edu	37	2	238990408	238990408	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:238990408C>T	uc010fyv.2	+	5	607	c.543C>T	c.(541-543)CTC>CTT	p.L181L	SCLY_uc002vxm.3_Silent_p.L148L|SCLY_uc002vxn.2_Silent_p.L181L|SCLY_uc010znq.1_Intron|SCLY_uc010znr.1_Silent_p.L87L	NM_016510	NP_057594	Q96I15	SCLY_HUMAN	selenocysteine lyase	181					cellular amino acid metabolic process	cytosol	pyridoxal phosphate binding|selenocysteine lyase activity|transferase activity			ovary(2)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;1.37e-23)|OV - Ovarian serous cystadenocarcinoma(60;4.6e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;8.25e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000128)|Lung(119;0.0118)|LUSC - Lung squamous cell carcinoma(224;0.0285)		ACGACATCCTCGCGGCAGTCC	0.562												
PER2	8864	broad.mit.edu	37	2	239181712	239181712	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:239181712G>A	uc002vyc.2	-	5	806	c.569C>T	c.(568-570)GCC>GTC	p.A190V	PER2_uc010znv.1_Missense_Mutation_p.A190V|PER2_uc010znw.1_Missense_Mutation_p.A190V|PER2_uc010fyx.1_Missense_Mutation_p.A190V	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	190	PAS 1.				circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		GAGGCTTACGGCATTCTTCAC	0.572												
GPC1	2817	broad.mit.edu	37	2	241404053	241404053	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:241404053G>A	uc002vyw.3	+	5	1125	c.904G>A	c.(904-906)GAC>AAC	p.D302N		NM_002081	NP_002072	P35052	GPC1_HUMAN	glypican 1 precursor	302					axon guidance	anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;4.51e-33)|all cancers(36;1.74e-30)|OV - Ovarian serous cystadenocarcinoma(60;4.73e-15)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;9.1e-06)|Colorectal(34;0.000487)|Lung(119;0.0013)|LUSC - Lung squamous cell carcinoma(224;0.0154)|COAD - Colon adenocarcinoma(134;0.0194)|READ - Rectum adenocarcinoma(96;0.0949)		GCTCATCACCGACAAGTTCTG	0.617												
ANKMY1	51281	broad.mit.edu	37	2	241465157	241465157	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:241465157T>C	uc002vyz.1	-	6	1242	c.1013A>G	c.(1012-1014)TAC>TGC	p.Y338C	ANKMY1_uc002vza.1_Missense_Mutation_p.Y197C|ANKMY1_uc010fzd.1_Missense_Mutation_p.Y427C|ANKMY1_uc002vzb.1_Missense_Mutation_p.Y197C|ANKMY1_uc002vzc.1_Missense_Mutation_p.Y197C|ANKMY1_uc002vzd.1_Missense_Mutation_p.Y197C|ANKMY1_uc010fze.1_Missense_Mutation_p.Y7C|ANKMY1_uc002vze.2_Missense_Mutation_p.Y99C	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	338							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		CTGGGCGGGGTAGTGGAGGAG	0.582												
HDLBP	3069	broad.mit.edu	37	2	242181959	242181959	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:242181959T>C	uc002waz.2	-	17	2313	c.2085A>G	c.(2083-2085)TCA>TCG	p.S695S	HDLBP_uc002wba.2_Silent_p.S695S|HDLBP_uc002wbb.2_Silent_p.S647S	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	695	KH 8.				cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		TGTCGCTTCCTGAACCTTCCA	0.602												
FARP2	9855	broad.mit.edu	37	2	242432345	242432345	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:242432345A>G	uc002wbi.1	+	25	2906	c.2789A>G	c.(2788-2790)AAC>AGC	p.N930S		NM_014808	NP_055623	O94887	FARP2_HUMAN	FERM, RhoGEF and pleckstrin domain protein 2	930	PH 2.				axon guidance|neuron remodeling|Rac protein signal transduction|regulation of Rho protein signal transduction	cytoskeleton|cytosol|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(19;4.88e-34)|all_epithelial(40;4.81e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Lung NSC(271;0.0886)|Ovarian(221;0.0905)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;1.81e-33)|all cancers(36;1.61e-30)|OV - Ovarian serous cystadenocarcinoma(60;6.83e-15)|Kidney(56;1.19e-08)|KIRC - Kidney renal clear cell carcinoma(57;8.98e-08)|BRCA - Breast invasive adenocarcinoma(100;1.49e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00125)|Colorectal(34;0.0199)|COAD - Colon adenocarcinoma(134;0.121)		TATTGACAGAACCAGCTTTCA	0.463												
ING5	84289	broad.mit.edu	37	2	242644110	242644110	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:242644110T>A	uc002wcd.2	+	2	105	c.80T>A	c.(79-81)CTG>CAG	p.L27Q	ING5_uc002wcc.1_Missense_Mutation_p.L27Q	NM_032329	NP_115705	Q8WYH8	ING5_HUMAN	inhibitor of growth family, member 5	27					DNA replication|histone H3 acetylation|negative regulation of cell proliferation|negative regulation of growth|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.16e-33)|all cancers(36;4.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.6e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0839)		AACTTCCAGCTGATGCGAGAG	0.522												
ING5	84289	broad.mit.edu	37	2	242662478	242662478	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:242662478G>A	uc002wcd.2	+	6	632	c.607G>A	c.(607-609)GAC>AAC	p.D203N		NM_032329	NP_115705	Q8WYH8	ING5_HUMAN	inhibitor of growth family, member 5	203	PHD-type.				DNA replication|histone H3 acetylation|negative regulation of cell proliferation|negative regulation of growth|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.16e-33)|all cancers(36;4.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.6e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0839)		GATTGGCTGTGACAATCCAGA	0.592												
RBCK1	10616	broad.mit.edu	37	20	409723	409723	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:409723A>G	uc002wdp.3	+	11	2130	c.1437A>G	c.(1435-1437)CCA>CCG	p.P479P	RBCK1_uc002wdq.3_Silent_p.P437P|RBCK1_uc010fzy.2_RNA|RBCK1_uc002wdr.3_Silent_p.P309P	NM_031229	NP_112506	Q9BYM8	HOIL1_HUMAN	RanBP-type and C3HC4-type zinc finger containing	479					interspecies interaction between organisms|negative regulation of NF-kappaB transcription factor activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|proteasomal ubiquitin-dependent protein catabolic process|protein linear polyubiquitination|T cell receptor signaling pathway	LUBAC complex	protein binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding				0		all_epithelial(17;0.172)|Lung NSC(37;0.191)|Breast(17;0.231)				CCAAGGGCCCACGCTGGGGCC	0.557												
CSNK2A1	1457	broad.mit.edu	37	20	472935	472935	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:472935C>T	uc002wdw.1	-	9	977	c.584G>A	c.(583-585)CGA>CAA	p.R195Q	CSNK2A1_uc002wdx.1_Missense_Mutation_p.R195Q|CSNK2A1_uc002wdy.1_Missense_Mutation_p.R59Q	NM_177559	NP_808227	P68400	CSK21_HUMAN	casein kinase II alpha 1 subunit isoform a	195	Protein kinase.				axon guidance|Wnt receptor signaling pathway	cytosol|NuRD complex|plasma membrane|Sin3 complex	ATP binding|protein N-terminus binding|protein serine/threonine kinase activity			ovary(1)	1		Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.0969)			TTTGAAGTATCGGGAAGCAAC	0.408												
RSPO4	343637	broad.mit.edu	37	20	948715	948715	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:948715G>A	uc002wej.2	-	2	243	c.146C>T	c.(145-147)ACC>ATC	p.T49I	RSPO4_uc002wek.2_Missense_Mutation_p.T49I	NM_001029871	NP_001025042	Q2I0M5	RSPO4_HUMAN	R-spondin family, member 4 isoform 1 precursor	49					Wnt receptor signaling pathway	extracellular region	heparin binding				0						CTGCTGGCAGGTGGAACAGCC	0.637												
C20orf46	55321	broad.mit.edu	37	20	1161734	1161734	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:1161734T>C	uc010gaa.1	-	3	748	c.529A>G	c.(529-531)ATC>GTC	p.I177V	C20orf46_uc002weq.1_Missense_Mutation_p.I177V	NM_018354	NP_060824	Q9NUR3	CT046_HUMAN	hypothetical protein LOC55321	177	Helical; (Potential).					integral to membrane	protein binding			ovary(1)	1						CCTGCGATGATGCACCTGTCC	0.647												
TMC2	117532	broad.mit.edu	37	20	2593880	2593880	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:2593880A>G	uc002wgf.1	+	14	1799	c.1784A>G	c.(1783-1785)TAC>TGC	p.Y595C	TMC2_uc002wgg.1_Missense_Mutation_p.Y579C|TMC2_uc010zpw.1_Missense_Mutation_p.Y427C|TMC2_uc010zpx.1_Missense_Mutation_p.Y426C	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	595	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						CTGGTAACGTACATCACCATC	0.557												
TMC2	117532	broad.mit.edu	37	20	2597830	2597830	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:2597830G>A	uc002wgf.1	+	16	2068	c.2053G>A	c.(2053-2055)GTG>ATG	p.V685M	TMC2_uc002wgg.1_Missense_Mutation_p.V669M	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	685	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						CCATGAACGCGTGTTCAAAGC	0.592												
CPXM1	56265	broad.mit.edu	37	20	2776643	2776643	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:2776643G>A	uc002wgu.2	-	10	1471	c.1407C>T	c.(1405-1407)ACC>ACT	p.T469T	CPXM1_uc010gas.2_Silent_p.T469T	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	469					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						CATTGGGCAGGGTGTAGTAAG	0.597												
VPS16	64601	broad.mit.edu	37	20	2841438	2841438	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:2841438C>T	uc002whe.2	+	6	607	c.559C>T	c.(559-561)CGA>TGA	p.R187*	VPS16_uc002whh.2_5'Flank|VPS16_uc002whf.2_Nonsense_Mutation_p.R187*|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_5'Flank	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	187					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						GTGCCAGGACCGAGTGGCACA	0.572												
VPS16	64601	broad.mit.edu	37	20	2845650	2845650	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:2845650G>A	uc002whe.2	+	20	2001	c.1953G>A	c.(1951-1953)CTG>CTA	p.L651L	VPS16_uc002whh.2_RNA|PTPRA_uc002whj.2_5'UTR|VPS16_uc002whf.2_Silent_p.L507L|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_Silent_p.L337L|VPS16_uc002whi.2_Silent_p.L135L	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	651					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						TAGCAGCTCTGCAGACAGCCG	0.557												
PTPRA	5786	broad.mit.edu	37	20	2998463	2998463	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:2998463A>G	uc010zqd.1	+	12	1295	c.978A>G	c.(976-978)GGA>GGG	p.G326G	PTPRA_uc002whj.2_Silent_p.G315G|PTPRA_uc002whk.2_Silent_p.G306G|PTPRA_uc002whl.2_Silent_p.G306G|PTPRA_uc002whm.2_Silent_p.G82G|PTPRA_uc002whn.2_Silent_p.G306G|PTPRA_uc002who.2_5'UTR	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	315	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						CTACTTTAGGACCAAAAGAAG	0.453												
FASTKD5	60493	broad.mit.edu	37	20	3127441	3127441	+	Missense_Mutation	SNP	A	A	G	rs147125058	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:3127441A>G	uc002whz.2	-	2	2587	c.2276T>C	c.(2275-2277)GTA>GCA	p.V759A	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	759					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						AGAGGTGAATACTTTCTCATG	0.448												
FASTKD5	60493	broad.mit.edu	37	20	3127511	3127511	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:3127511A>G	uc002whz.2	-	2	2517	c.2206T>C	c.(2206-2208)TCC>CCC	p.S736P	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	736	RAP.				apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						TCCCAGTAGGATAACTCTACC	0.493												
C20orf194	25943	broad.mit.edu	37	20	3233240	3233240	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:3233240T>C	uc002wii.2	-	37	3563	c.3512A>G	c.(3511-3513)GAC>GGC	p.D1171G	C20orf194_uc002wij.3_Missense_Mutation_p.D910G|C20orf194_uc002wik.2_Missense_Mutation_p.D845G	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	1171											0						CTCAAAGAGGTCATGATACTC	0.517												
SLC23A2	9962	broad.mit.edu	37	20	4855324	4855324	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:4855324T>C	uc002wlg.1	-	10	1218	c.843A>G	c.(841-843)TTA>TTG	p.L281L	SLC23A2_uc010zqr.1_Silent_p.L166L|SLC23A2_uc002wlh.1_Silent_p.L281L|SLC23A2_uc002wli.2_Silent_p.L280L	NM_005116	NP_005107	Q9UGH3	S23A2_HUMAN	solute carrier family 23 (nucleobase	281	Helical; (Potential).				L-ascorbic acid metabolic process|molecular hydrogen transport|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|transepithelial L-ascorbic acid transport	apical plasma membrane|integral to plasma membrane|membrane fraction	nucleobase transmembrane transporter activity|sodium-dependent L-ascorbate transmembrane transporter activity|sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2						GAGAAAACAGTAATACTAGGA	0.358												
SLC23A2	9962	broad.mit.edu	37	20	4880213	4880213	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:4880213G>A	uc002wlg.1	-	6	845	c.470C>T	c.(469-471)ACG>ATG	p.T157M	SLC23A2_uc010zqr.1_Missense_Mutation_p.T156M|SLC23A2_uc002wlh.1_Missense_Mutation_p.T157M|SLC23A2_uc002wli.2_Missense_Mutation_p.T156M	NM_005116	NP_005107	Q9UGH3	S23A2_HUMAN	solute carrier family 23 (nucleobase	157	Helical; (Potential).				L-ascorbic acid metabolic process|molecular hydrogen transport|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|transepithelial L-ascorbic acid transport	apical plasma membrane|integral to plasma membrane|membrane fraction	nucleobase transmembrane transporter activity|sodium-dependent L-ascorbate transmembrane transporter activity|sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2						GCATCCAAACGTTGTCTGTAG	0.552												
PCNA	5111	broad.mit.edu	37	20	5096170	5096170	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:5096170A>G	uc002wlp.2	-	5	834	c.631T>C	c.(631-633)TAC>CAC	p.Y211H	C20orf30_uc010gbi.2_5'Flank|C20orf30_uc002wlk.2_5'Flank|C20orf30_uc002wll.2_5'Flank|C20orf30_uc002wlm.2_5'Flank|C20orf30_uc002wln.2_5'Flank|C20orf30_uc002wlo.2_5'Flank|PCNA_uc002wlq.2_Missense_Mutation_p.Y211H	NM_182649	NP_872590	P12004	PCNA_HUMAN	proliferating cell nuclear antigen	211					cell proliferation|DNA strand elongation involved in DNA replication|mismatch repair|nucleotide-excision repair, DNA gap filling|phosphatidylinositol-mediated signaling|positive regulation of deoxyribonuclease activity|regulation of DNA replication|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair|translesion synthesis	cytoplasm|DNA replication factor C complex|microtubule cytoskeleton|nuclear replication fork|nucleoplasm|PCNA complex|PCNA-p21 complex	dinucleotide insertion or deletion binding|DNA polymerase processivity factor activity|MutLalpha complex binding|purine-specific mismatch base pair DNA N-glycosylase activity			lung(1)	1						AAGTTCAGGTACCTCAGTGCA	0.333								DNA_polymerases_(catalytic_subunits)				
FERMT1	55612	broad.mit.edu	37	20	6057833	6057833	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:6057833C>A	uc002wmr.2	-	15	2810	c.2021G>T	c.(2020-2022)GGC>GTC	p.G674V	FERMT1_uc002wmq.2_Missense_Mutation_p.G227V|FERMT1_uc010gbt.2_Missense_Mutation_p.G417V	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	674					cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						ATCCTGACCGCCGGTCAATTT	0.542											OREG0025763	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
FERMT1	55612	broad.mit.edu	37	20	6057917	6057917	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:6057917T>C	uc002wmr.2	-	15	2726	c.1937A>G	c.(1936-1938)TAC>TGC	p.Y646C	FERMT1_uc002wmq.2_Missense_Mutation_p.Y199C|FERMT1_uc010gbt.2_Missense_Mutation_p.Y389C	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	646	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						GCCGCCAATGTACTCGTGCAC	0.493											OREG0025763	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
BMP2	650	broad.mit.edu	37	20	6759620	6759620	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:6759620G>C	uc002wmu.1	+	3	1860	c.1075G>C	c.(1075-1077)GCA>CCA	p.A359P		NM_001200	NP_001191	P12643	BMP2_HUMAN	bone morphogenetic protein 2 preproprotein	359					BMP signaling pathway involved in heart induction|bone mineralization involved in bone maturation|cardiac cell differentiation|cardiac epithelial to mesenchymal transition|cartilage development|growth|negative regulation of cell cycle|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|pathway-restricted SMAD protein phosphorylation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cartilage development|positive regulation of endothelial cell proliferation|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of phosphatase activity|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	activin receptor activity, type II|BMP receptor binding|cytokine activity|growth factor activity|phosphatase activator activity|protein heterodimerization activity|SMAD binding|transforming growth factor beta receptor binding			ovary(1)|breast(1)	2					Simvastatin(DB00641)	GATTCCTAAGGCATGCTGTGT	0.458												
HAO1	54363	broad.mit.edu	37	20	7894828	7894828	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:7894828T>C	uc002wmw.1	-	3	552	c.528A>G	c.(526-528)AAA>AAG	p.K176K	HAO1_uc010gbu.2_Silent_p.K176K	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	176	FMN hydroxy acid dehydrogenase.				cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						GTGGCGGCAGTTTGAATCTGT	0.378												
SNAP25	6616	broad.mit.edu	37	20	10277662	10277662	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:10277662G>A	uc002wnq.1	+	6	583	c.371G>A	c.(370-372)CGG>CAG	p.R124Q	SNAP25_uc002wnr.1_Missense_Mutation_p.R124Q|SNAP25_uc002wns.1_Missense_Mutation_p.R61Q|SNAP25_uc010gca.1_Missense_Mutation_p.R124Q|SNAP25_uc010gcb.1_Missense_Mutation_p.R61Q|SNAP25_uc010gcc.1_Intron	NM_130811	NP_570824	P60880	SNP25_HUMAN	synaptosomal-associated protein 25 isoform	124					energy reserve metabolic process|glutamate secretion|neurotransmitter uptake|synaptic vesicle docking involved in exocytosis	cell junction|growth cone|perinuclear region of cytoplasm|synapse|synaptosome				skin(2)	2					Botulinum Toxin Type A(DB00083)	GTGGACGAACGGGAGCAGATG	0.438												
JAG1	182	broad.mit.edu	37	20	10624479	10624479	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:10624479T>C	uc002wnw.2	-	20	2921	c.2405A>G	c.(2404-2406)AAC>AGC	p.N802S	JAG1_uc010gcd.1_Missense_Mutation_p.N360S	NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	802	EGF-like 15; calcium-binding (Potential).|Extracellular (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						CCGGTACCAGTTGTCTCCATC	0.522									Alagille_Syndrome			
KIF16B	55614	broad.mit.edu	37	20	16359926	16359926	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:16359926G>A	uc002wpg.1	-	19	2879	c.2721C>T	c.(2719-2721)CGC>CGT	p.R907R	KIF16B_uc002wpe.1_Silent_p.R289R|KIF16B_uc002wpf.1_Silent_p.R289R|KIF16B_uc010gch.1_Silent_p.R907R|KIF16B_uc010gci.1_Silent_p.R907R|KIF16B_uc010gcj.1_Silent_p.R918R	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	907	Glu-rich.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						ACTGTAGCTGGCGTTCTTTAT	0.443												
ZNF133	7692	broad.mit.edu	37	20	18296188	18296188	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:18296188T>C	uc010gcq.2	+	5	998	c.693T>C	c.(691-693)AGT>AGC	p.S231S	ZNF133_uc010zrv.1_Silent_p.S234S|ZNF133_uc010zrw.1_Silent_p.S168S|ZNF133_uc010gcr.2_Silent_p.S231S|ZNF133_uc010zrx.1_Silent_p.S136S|ZNF133_uc002wql.3_Silent_p.S230S|ZNF133_uc010gcs.2_Silent_p.S230S|ZNF133_uc010zry.1_Silent_p.S136S|ZNF133_uc002wqm.2_Silent_p.S231S	NM_003434	NP_003425	P52736	ZN133_HUMAN	zinc finger protein 133	231	C2H2-type 1.					nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)	2						ACCTGCTCAGTCACCAGCGGA	0.498												
SEC23B	10483	broad.mit.edu	37	20	18513351	18513351	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:18513351T>C	uc002wqz.1	+	11	1720	c.1277T>C	c.(1276-1278)GTA>GCA	p.V426A	SEC23B_uc002wra.1_Missense_Mutation_p.V426A|SEC23B_uc002wrb.1_Missense_Mutation_p.V426A|SEC23B_uc010zsb.1_Missense_Mutation_p.V408A|SEC23B_uc002wrc.1_Missense_Mutation_p.V426A	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B	426					ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						GGTCCATGCGTATCTCTGAAT	0.463												
SEC23B	10483	broad.mit.edu	37	20	18523751	18523751	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:18523751T>C	uc002wqz.1	+	14	2043	c.1600T>C	c.(1600-1602)TTC>CTC	p.F534L	SEC23B_uc002wra.1_Missense_Mutation_p.F534L|SEC23B_uc002wrb.1_Missense_Mutation_p.F534L|SEC23B_uc010zsb.1_Missense_Mutation_p.F516L|SEC23B_uc002wrc.1_Missense_Mutation_p.F534L	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B	534					ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						GCTTGGGGTGTTCCGAGCGGA	0.567												
CRNKL1	51340	broad.mit.edu	37	20	20020405	20020405	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:20020405G>A	uc002wrs.2	-	12	1908	c.1876C>T	c.(1876-1878)CGG>TGG	p.R626W		NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	626	HAT 12.				spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						TAAAGCTTCCGGCATCTGTCA	0.363												
C20orf26	26074	broad.mit.edu	37	20	20144857	20144857	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:20144857A>G	uc002wru.2	+	11	1266	c.1190A>G	c.(1189-1191)GAG>GGG	p.E397G	C20orf26_uc010gcw.1_Missense_Mutation_p.E351G|C20orf26_uc010zse.1_Missense_Mutation_p.E397G|C20orf26_uc010zsf.1_Missense_Mutation_p.E397G	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	397										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		TGTATTGATGAGAAATATGAA	0.478												
C20orf26	26074	broad.mit.edu	37	20	20226821	20226821	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:20226821A>G	uc002wru.2	+	19	2197	c.2121A>G	c.(2119-2121)AAA>AAG	p.K707K	C20orf26_uc010zse.1_Silent_p.K687K|C20orf26_uc002wrw.2_RNA|C20orf26_uc002wrv.2_Silent_p.K63K	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	707										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CAGGAAAAAAACTTCTGGACA	0.353												
RALGAPA2	57186	broad.mit.edu	37	20	20571891	20571891	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:20571891C>T	uc002wrz.2	-	17	2414	c.2271G>A	c.(2269-2271)CAG>CAA	p.Q757Q	RALGAPA2_uc010gcx.2_Silent_p.Q461Q|RALGAPA2_uc010zsg.1_Silent_p.Q205Q	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	757	Poly-Gln.				activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						CCTGCTGCTGCTGTCCCACTG	0.512												
RALGAPA2	57186	broad.mit.edu	37	20	20582381	20582381	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:20582381C>T	uc002wrz.2	-	16	2291	c.2148G>A	c.(2146-2148)ACG>ACA	p.T716T	RALGAPA2_uc010gcx.2_Silent_p.T420T|RALGAPA2_uc010zsg.1_Silent_p.T117T	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	716					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						GTGCTCCAGACGTGGTGGCAC	0.463												
PLK1S1	55857	broad.mit.edu	37	20	21143065	21143065	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:21143065T>C	uc002wsb.2	+	5	1092	c.959T>C	c.(958-960)GTC>GCC	p.V320A	PLK1S1_uc010zsh.1_Missense_Mutation_p.V217A|PLK1S1_uc010zsi.1_Missense_Mutation_p.V187A|PLK1S1_uc010zsj.1_RNA|uc002wsc.2_Intron|PLK1S1_uc002wsd.2_RNA	NM_018474	NP_060944	Q2M2Z5	KIZ_HUMAN	polo-like kinase 1 substrate 1 isoform 1	320					spindle organization	centrosome	protein kinase binding				0						AGCCCGCCAGTCTCTCCGATA	0.458												
FOXA2	3170	broad.mit.edu	37	20	22563595	22563595	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:22563595G>A	uc002wsn.2	-	3	457	c.267C>T	c.(265-267)GGC>GGT	p.G89G	FOXA2_uc002wsm.2_Silent_p.G95G	NM_153675	NP_710141	Q9Y261	FOXA2_HUMAN	forkhead box A2 isoform 2	89	Transactivation domain 1 (By similarity).				cell differentiation in hindbrain|central nervous system myelin formation|chromatin modification|dorsal/ventral neural tube patterning|ectoderm formation|endocrine pancreas development|endoderm development|epithelial tube branching involved in lung morphogenesis|in utero embryonic development|lung epithelial cell differentiation|negative regulation of neuron differentiation|neuron fate specification|oligodendrocyte cell fate commitment|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of neuron differentiation|primitive streak formation|regulation of blood coagulation|regulation of sequence-specific DNA binding transcription factor activity|response to interleukin-6	cytoplasm|transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|kidney(1)|central_nervous_system(1)	4	Lung NSC(19;0.188)					AGCCGCCCATGCCCGCCATGG	0.771												
NXT1	29107	broad.mit.edu	37	20	23334997	23334997	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:23334997C>T	uc002wsx.1	+	2	706	c.319C>T	c.(319-321)CGG>TGG	p.R107W		NM_013248	NP_037380	Q9UKK6	NXT1_HUMAN	NTF2-like export factor 1	107	NTF2.					cytoplasm|nuclear pore				ovary(1)	1	Lung NSC(19;0.0605)|Colorectal(13;0.0993)|all_lung(19;0.135)					GAACAAACAACGGGACTTCAA	0.552												
ACSS1	84532	broad.mit.edu	37	20	25003605	25003605	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:25003605A>G	uc002wub.2	-	5	1809	c.931T>C	c.(931-933)TAC>CAC	p.Y311H	ACSS1_uc002wuc.2_Missense_Mutation_p.Y311H|ACSS1_uc010gdc.2_Intron|ACSS1_uc002wud.1_RNA|ACSS1_uc002wua.2_Missense_Mutation_p.Y228H	NM_032501	NP_115890	Q9NUB1	ACS2L_HUMAN	acyl-CoA synthetase short-chain family member 1	311					acetyl-CoA biosynthetic process|ethanol oxidation|xenobiotic metabolic process	mitochondrial matrix	acetate-CoA ligase activity|AMP binding|ATP binding|protein binding			ovary(1)|skin(1)	2					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TAGAGCAGGTAGCCTGCCTGG	0.637												
ABHD12	26090	broad.mit.edu	37	20	25290206	25290206	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:25290206C>T	uc002wus.1	-	7	763	c.625G>A	c.(625-627)GGT>AGT	p.G209S	ABHD12_uc002wuq.2_Missense_Mutation_p.G209S|ABHD12_uc002wur.2_Missense_Mutation_p.G209S|ABHD12_uc002wut.1_Missense_Mutation_p.G209S|ABHD12_uc002wuu.1_5'UTR	NM_001042472	NP_001035937	Q8N2K0	ABD12_HUMAN	abhydrolase domain containing 12 isoform a	209	Extracellular (Potential).					integral to membrane	acylglycerol lipase activity			skin(1)	1						ACTGAGTCACCCCAACCTGGG	0.582												
HCK	3055	broad.mit.edu	37	20	30671779	30671779	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:30671779C>T	uc002wxh.2	+	7	786	c.615C>T	c.(613-615)AAC>AAT	p.N205N	HCK_uc010gdy.2_Silent_p.N184N|HCK_uc002wxi.2_Silent_p.N183N	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	205	SH2.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CCCTGGACAACGGGGGCTTCT	0.562												
PLAGL2	5326	broad.mit.edu	37	20	30785129	30785129	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:30785129A>G	uc002wxn.2	-	3	834	c.617T>C	c.(616-618)GTA>GCA	p.V206A		NM_002657	NP_002648	Q9UPG8	PLAL2_HUMAN	pleiomorphic adenoma gene-like 2	206	C2H2-type 5.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GTGCCGCCGTACATCCTTACG	0.612												
KIF3B	9371	broad.mit.edu	37	20	30898349	30898349	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:30898349G>A	uc002wxq.2	+	2	936	c.769G>A	c.(769-771)GCA>ACA	p.A257T	KIF3B_uc010ztv.1_Missense_Mutation_p.A257T|KIF3B_uc010ztw.1_Missense_Mutation_p.A257T	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	257	Kinesin-motor.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CAAGACCGGCGCACAAGGGGA	0.512												
ASXL1	171023	broad.mit.edu	37	20	31022395	31022395	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:31022395C>T	uc002wxs.2	+	12	2306	c.1880C>T	c.(1879-1881)GCG>GTG	p.A627V	ASXL1_uc010geb.2_Missense_Mutation_p.A518V	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	627					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding	p.A627fs*7(2)		haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						GTCCGAGGGGCGAGAGGTCAC	0.706			F|N|Mis		MDS|CMML							
DNMT3B	1789	broad.mit.edu	37	20	31372648	31372648	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:31372648C>T	uc002wyc.2	+	4	610	c.289C>T	c.(289-291)CGT>TGT	p.R97C	DNMT3B_uc010ztx.1_RNA|DNMT3B_uc010zty.1_RNA|DNMT3B_uc002wyd.2_Missense_Mutation_p.R97C|DNMT3B_uc002wye.2_Missense_Mutation_p.R97C|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Missense_Mutation_p.R97C|DNMT3B_uc010zua.1_Intron|DNMT3B_uc002wyf.2_Missense_Mutation_p.R109C	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	97	Interaction with DNMT1 and DNMT3A.				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						AACCAGGACTCGTTCAGAAAG	0.507												
SUN5	140732	broad.mit.edu	37	20	31577472	31577472	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:31577472T>C	uc002wyi.2	-	9	660	c.567A>G	c.(565-567)ATA>ATG	p.I189M		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	189					spermatogenesis					skin(1)	1						AATCTCCGTGTATCATCTTCA	0.493												
C20orf186	149954	broad.mit.edu	37	20	31672763	31672763	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:31672763A>G	uc010zue.1	+	4	758	c.743A>G	c.(742-744)TAC>TGC	p.Y248C		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	248						cytoplasm|extracellular region	lipid binding				0						GTGGGTGTCTACCTGAGCTTG	0.652												
CDK5RAP1	51654	broad.mit.edu	37	20	31946924	31946924	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:31946924G>T	uc010gek.2	-	15	1855	c.1731C>A	c.(1729-1731)ACC>ACA	p.T577T	CDK5RAP1_uc002wyy.2_Silent_p.T473T|CDK5RAP1_uc002wyz.2_Silent_p.T563T|CDK5RAP1_uc002wza.2_Silent_p.T562T|CDK5RAP1_uc010gel.2_Silent_p.T472T|CDK5RAP1_uc010gem.2_Silent_p.T486T|CDK5RAP1_uc002wzc.1_3'UTR|CDK5RAP1_uc002wzb.1_3'UTR	NM_016408	NP_057492	Q96SZ6	CK5P1_HUMAN	CDK5 regulatory subunit associated protein 1	577	CDK5R1-binding.|TRAM.				brain development|negative regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation|tRNA modification	cytoplasm	4 iron, 4 sulfur cluster binding|metal ion binding|neuronal Cdc2-like kinase binding|transferase activity			ovary(2)|skin(2)|lung(1)	5						AACTGGCTGAGGTGATCTGAA	0.502												
SNTA1	6640	broad.mit.edu	37	20	32005722	32005722	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:32005722A>G	uc002wzd.1	-	3	776	c.504T>C	c.(502-504)TAT>TAC	p.Y168Y	SNTA1_uc010zuf.1_Silent_p.Y168Y	NM_003098	NP_003089	Q13424	SNTA1_HUMAN	acidic alpha 1 syntrophin	168	PH 1.|PDZ.				muscle contraction	cell junction|cytoplasm|cytoskeleton|sarcolemma	actin binding|calmodulin binding			skin(1)	1						CGTCCTTCATATACTTGACTG	0.498												
NCOA6	23054	broad.mit.edu	37	20	33330967	33330967	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:33330967T>C	uc002xav.2	-	12	5664	c.3093A>G	c.(3091-3093)CAA>CAG	p.Q1031Q	NCOA6_uc002xaw.2_Silent_p.Q1031Q	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1031	NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						TCATCATTtgttgctgctgct	0.493												
FAM83C	128876	broad.mit.edu	37	20	33874637	33874637	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:33874637G>A	uc010zux.1	-	4	2063	c.1945C>T	c.(1945-1947)CCT>TCT	p.P649S	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Missense_Mutation_p.P304S	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	649										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			TTGGGCCCAGGCCCCTCACCA	0.647												
ERGIC3	51614	broad.mit.edu	37	20	34145273	34145273	+	Nonstop_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:34145273T>C	uc002xct.2	+	13	1219	c.1150T>C	c.(1150-1152)TAG>CAG	p.*384Q	ERGIC3_uc002xcs.2_Nonstop_Mutation_p.*389Q|ERGIC3_uc002xcu.2_Nonstop_Mutation_p.*399Q|ERGIC3_uc002xcv.2_Nonstop_Mutation_p.*347Q	NM_015966	NP_057050	Q9Y282	ERGI3_HUMAN	serologically defined breast cancer antigen 84	384					vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane	protein binding			large_intestine(2)|ovary(1)	3	Lung NSC(9;0.00489)|all_lung(11;0.00729)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			GAAGACAACGTAGTCACCCTC	0.592												
PHF20	51230	broad.mit.edu	37	20	34526819	34526819	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:34526819A>G	uc002xek.1	+	16	2612	c.2501A>G	c.(2500-2502)TAT>TGT	p.Y834C		NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	834					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					GAGGAATCCTATATCACCAGT	0.612												
EPB41L1	2036	broad.mit.edu	37	20	34773147	34773147	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:34773147T>C	uc002xfb.2	+	7	846	c.675T>C	c.(673-675)GGT>GGC	p.G225G	EPB41L1_uc002xeu.2_Silent_p.G163G|EPB41L1_uc010zvo.1_Silent_p.G225G|EPB41L1_uc002xev.2_Silent_p.G225G|EPB41L1_uc002xew.2_Silent_p.G128G|EPB41L1_uc002xex.2_Silent_p.G194G|EPB41L1_uc002xey.2_Intron|EPB41L1_uc002xez.2_Silent_p.G163G	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	225	FERM.				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					CTGAGCTGGGTGACTATGATG	0.612												
DLGAP4	22839	broad.mit.edu	37	20	35060838	35060838	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:35060838C>T	uc002xff.2	+	3	1153	c.718C>T	c.(718-720)CGC>TGC	p.R240C	DLGAP4_uc010zvp.1_Missense_Mutation_p.R240C	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	240					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CAGCCAGCCACGCTACTTCAT	0.632												
DLGAP4	22839	broad.mit.edu	37	20	35125161	35125161	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:35125161A>G	uc002xff.2	+	8	2137	c.1702A>G	c.(1702-1704)ACC>GCC	p.T568A	DLGAP4_uc010zvp.1_Missense_Mutation_p.T568A|DLGAP4_uc002xfg.2_5'UTR|DLGAP4_uc002xfh.2_Missense_Mutation_p.T29A|DLGAP4_uc002xfi.2_5'UTR|DLGAP4_uc002xfj.2_5'Flank	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	568					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CCCTCCACGCACCACTTCAAA	0.572												
SAMHD1	25939	broad.mit.edu	37	20	35559270	35559270	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:35559270T>C	uc002xgh.1	-	5	648	c.518A>G	c.(517-519)TAT>TGT	p.Y173C		NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	173	HD.				defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				TCCTGCTAGATACCCCACCCT	0.428												
RBL1	5933	broad.mit.edu	37	20	35661170	35661170	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:35661170A>G	uc002xgi.2	-	16	2359	c.2280T>C	c.(2278-2280)GGT>GGC	p.G760G	RBL1_uc010zvt.1_RNA|RBL1_uc002xgj.1_Silent_p.G760G	NM_002895	NP_002886	P28749	RBL1_HUMAN	retinoblastoma-like protein 1 isoform a	760	Pocket; binds T and E1A.|Spacer.				cell cycle|chromatin modification|interspecies interaction between organisms|regulation of cell cycle|regulation of lipid kinase activity|transcription, DNA-dependent		transcription factor binding			lung(5)|skin(3)|ovary(2)	10		Myeloproliferative disorder(115;0.00878)				TTGGAGAAGCACCAATTAATG	0.403												
GHRH	2691	broad.mit.edu	37	20	35882611	35882611	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:35882611A>G	uc002xgr.2	-	3	308	c.308_splice	c.e3+1	p.S103_splice	GHRH_uc002xgs.2_Splice_Site_p.S103_splice|GHRH_uc002xgt.2_Splice_Site_p.R103_splice	NM_021081	NP_066567	P01286	SLIB_HUMAN	growth hormone releasing hormone preproprotein						activation of adenylate cyclase activity by G-protein signaling pathway|adenohypophysis development|growth hormone secretion|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of circadian sleep/wake cycle, REM sleep|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to food	extracellular space|terminal button	growth hormone-releasing hormone activity|growth hormone-releasing hormone receptor binding			ovary(1)	1		Myeloproliferative disorder(115;0.00878)				ACACACCCATACCTGTGCTTC	0.542												
RPRD1B	58490	broad.mit.edu	37	20	36668870	36668870	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:36668870T>A	uc002xho.3	+	2	587	c.185T>A	c.(184-186)TTA>TAA	p.L62*		NM_021215	NP_067038	Q9NQG5	RPR1B_HUMAN	Regulation of nuclear pre-mRNA domain containing	62	CID.									pancreas(1)	1						TTTCTGTATTTAGCGAATGAT	0.328												
KIAA1755	85449	broad.mit.edu	37	20	36869609	36869609	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:36869609T>C	uc002xhy.1	-	3	1196	c.924A>G	c.(922-924)ATA>ATG	p.I308M	KIAA1755_uc002xhz.1_Missense_Mutation_p.I308M	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	308										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				TAGTTCCAGCTATCTCCTCTA	0.512												
SLC32A1	140679	broad.mit.edu	37	20	37357038	37357038	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:37357038T>G	uc002xjc.2	+	2	1597	c.1334T>G	c.(1333-1335)CTC>CGC	p.L445R		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	445	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	TTCACGCTGCTCATGGCCATT	0.672												
PPP1R16B	26051	broad.mit.edu	37	20	37531369	37531369	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:37531369G>A	uc002xje.2	+	6	819	c.630G>A	c.(628-630)GCG>GCA	p.A210A	PPP1R16B_uc010ggc.2_Silent_p.A210A	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	210					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				AGATGATTGCGGACATCCACT	0.562												
DHX35	60625	broad.mit.edu	37	20	37620999	37620999	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:37620999T>C	uc002xjh.2	+	7	524	c.513T>C	c.(511-513)AGT>AGC	p.S171S	DHX35_uc010zwa.1_Silent_p.S16S|DHX35_uc010zwb.1_Silent_p.S16S|DHX35_uc010zwc.1_Silent_p.S140S	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	171	Helicase ATP-binding.					catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				TGATTCTTAGTGTCATCATGC	0.428												
LPIN3	64900	broad.mit.edu	37	20	39976200	39976200	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:39976200T>C	uc002xjx.2	+	3	292	c.201T>C	c.(199-201)ATT>ATC	p.I67I	LPIN3_uc010ggh.2_Silent_p.I67I|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	67	N-LIP.				fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				AGGTAGACATTGAGCTCAATG	0.448												
EMILIN3	90187	broad.mit.edu	37	20	39990405	39990405	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:39990405T>C	uc002xjy.1	-	4	2028	c.1804A>G	c.(1804-1806)AGT>GGT	p.S602G		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	602						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				ACAGAGTCACTGAGGCCTGTG	0.582												
CHD6	84181	broad.mit.edu	37	20	40044014	40044014	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:40044014C>T	uc002xka.1	-	34	6929	c.6751G>A	c.(6751-6753)GCC>ACC	p.A2251T	CHD6_uc002xjz.1_5'Flank	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2251					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				ATGCCAAGGGCTCCCTGAAGT	0.567												
PTPRT	11122	broad.mit.edu	37	20	40747089	40747089	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:40747089T>C	uc002xkg.2	-	21	3120	c.2936A>G	c.(2935-2937)AAC>AGC	p.N979S	PTPRT_uc010ggj.2_Missense_Mutation_p.N998S|PTPRT_uc010ggi.2_Missense_Mutation_p.N182S	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	979	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCTGGCGGAGTTCTCCTGCCA	0.542												
L3MBTL	26013	broad.mit.edu	37	20	42169672	42169672	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:42169672A>G	uc010zwh.1	+	22	2473	c.2427A>G	c.(2425-2427)GGA>GGG	p.G809G	L3MBTL_uc002xkl.2_Silent_p.G741G|L3MBTL_uc002xkm.2_3'UTR|L3MBTL_uc010ggl.2_3'UTR|L3MBTL_uc002xkn.1_Intron|L3MBTL_uc002xko.2_3'UTR|L3MBTL_uc002xkp.2_Silent_p.G129G|SGK2_uc002xkq.1_Intron	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	Error:Variant_position_missing_in_Q9Y468_after_alignment					chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TTCAGGAAGGAAAAGGCATCC	0.483												
SGK2	10110	broad.mit.edu	37	20	42203604	42203604	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:42203604G>T	uc002xkv.2	+	9	1052	c.833G>T	c.(832-834)TGG>TTG	p.W278L	SGK2_uc002xkt.2_RNA|SGK2_uc002xkr.2_Missense_Mutation_p.W218L|SGK2_uc010ggm.2_Missense_Mutation_p.W218L|SGK2_uc002xks.2_Missense_Mutation_p.W217L|SGK2_uc002xku.2_Missense_Mutation_p.W218L	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	278	Protein kinase.				intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			GTGGACTGGTGGTGCTTGGGG	0.488												
MYBL2	4605	broad.mit.edu	37	20	42315583	42315583	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:42315583G>A	uc002xlb.1	+	5	586	c.371G>A	c.(370-372)CGC>CAC	p.R124H	MYBL2_uc010zwj.1_Missense_Mutation_p.R100H|MYBL2_uc002xla.1_Missense_Mutation_p.R124H	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	124	H-T-H motif (By similarity).|HTH myb-type 2.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TGCCGTGAACGCTGGCACAAC	0.582												
GTSF1L	149699	broad.mit.edu	37	20	42355289	42355289	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:42355289G>A	uc002xld.2	-	1	354	c.46C>T	c.(46-48)CGA>TGA	p.R16*	GTSF1L_uc002xlc.2_Nonsense_Mutation_p.R16*	NM_176791	NP_789761	Q9H1H1	GTSFL_HUMAN	gametocyte specific factor 1-like isoform 1	16	CHHC-type.						metal ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			AGTGGGATTCGGTGGTGAGGA	0.483												
TTPAL	79183	broad.mit.edu	37	20	43109032	43109032	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:43109032C>T	uc002xmc.1	+	3	517	c.393C>T	c.(391-393)ACC>ACT	p.T131T	TTPAL_uc002xmd.1_Silent_p.T131T|TTPAL_uc010ggr.1_Missense_Mutation_p.P9L	NM_024331	NP_077307	Q9BTX7	TTPAL_HUMAN	tocopherol (alpha) transfer protein-like	131	CRAL-TRIO.					intracellular	transporter activity			breast(1)	1						GGTTCCTCACCGTGCTGCCCC	0.557												
ADA	100	broad.mit.edu	37	20	43257798	43257798	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:43257798G>A	uc002xmj.2	-	3	236	c.108C>T	c.(106-108)ATC>ATT	p.I36I	ADA_uc010ggt.2_RNA	NM_000022	NP_000013	P00813	ADA_HUMAN	adenosine deaminase	36					adenosine catabolic process|cell adhesion|hypoxanthine salvage|inosine biosynthetic process|negative regulation of adenosine receptor signaling pathway|purine nucleotide salvage|purine ribonucleoside monophosphate biosynthetic process|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation	cell junction|cytoplasmic membrane-bounded vesicle lumen|cytosol|external side of plasma membrane|lysosome	adenosine deaminase activity|protein binding|zinc ion binding			pancreas(2)|ovary(1)	3		all_lung(126;1.24e-07)|Lung NSC(126;1.94e-07)|Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)		Adenosine(DB00640)|Cladribine(DB00242)|Dipyridamole(DB00975)|Erythromycin(DB00199)|Fludarabine(DB01073)|Idoxuridine(DB00249)|Nelarabine(DB01280)|Pentostatin(DB00552)|Theophylline(DB00277)|Vidarabine(DB00194)	CTGGGAGGGCGATCCCTCTCC	0.597									Adenosine_Deaminase_Deficiency			
UBE2C	11065	broad.mit.edu	37	20	44442079	44442079	+	Silent	SNP	A	A	G	rs150351110		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:44442079A>G	uc002xpm.2	+	2	185	c.105A>G	c.(103-105)CTA>CTG	p.L35L	UBE2C_uc002xpl.2_Silent_p.L35L|UBE2C_uc002xpn.2_5'UTR|UBE2C_uc002xpo.2_Silent_p.L35L|UBE2C_uc002xpp.2_Silent_p.L35L|UBE2C_uc002xpq.2_5'UTR	NM_007019	NP_008950	O00762	UBE2C_HUMAN	ubiquitin-conjugating enzyme E2C isoform 1	35					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cyclin catabolic process|exit from mitosis|free ubiquitin chain polymerization|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|positive regulation of exit from mitosis|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|protein K48-linked ubiquitination|spindle organization	anaphase-promoting complex|cytosol|nucleoplasm	ATP binding|protein binding|ubiquitin-protein ligase activity				0		Myeloproliferative disorder(115;0.0122)				TTTTCAGGCTACAGCAGGAGC	0.527												
ZNF335	63925	broad.mit.edu	37	20	44578447	44578447	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:44578447C>T	uc002xqw.2	-	24	3784	c.3661G>A	c.(3661-3663)GAC>AAC	p.D1221N	ZNF335_uc002xqv.2_Missense_Mutation_p.D333N|ZNF335_uc010zxk.1_Missense_Mutation_p.D1066N	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	1221	Gln-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				ACCTGGTTGTCGGAGGTCACC	0.552												
SULF2	55959	broad.mit.edu	37	20	46295229	46295229	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:46295229T>C	uc002xto.2	-	12	1910	c.1580A>G	c.(1579-1581)TAC>TGC	p.Y527C	SULF2_uc002xtr.2_Missense_Mutation_p.Y527C|SULF2_uc002xtq.2_Missense_Mutation_p.Y527C|SULF2_uc010zyd.1_5'Flank	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	527					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						GCTGGCCTTGTACTCTGTGGG	0.637												
ZNFX1	57169	broad.mit.edu	37	20	47868143	47868143	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:47868143T>G	uc002xui.2	-	13	3480	c.3233A>C	c.(3232-3234)GAA>GCA	p.E1078A		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	1078							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GCGGGCAATTTCAGGGCACAT	0.428												
ZNFX1	57169	broad.mit.edu	37	20	47887946	47887946	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:47887946T>C	uc002xui.2	-	3	650	c.403A>G	c.(403-405)ACA>GCA	p.T135A		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	135							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GGCTGTTCTGTAGGCTTCTGG	0.522												
B4GALT5	9334	broad.mit.edu	37	20	48256242	48256242	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:48256242C>T	uc002xuu.3	-	7	1084	c.890G>A	c.(889-891)GGT>GAT	p.G297D		NM_004776	NP_004767	O43286	B4GT5_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	297	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	galactosyltransferase activity|metal ion binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;2.51e-06)			ATCTTCTCCACCCCAACCCCA	0.438												
PTPN1	5770	broad.mit.edu	37	20	49184937	49184937	+	Silent	SNP	C	C	T	rs143550876	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:49184937C>T	uc002xvl.2	+	4	450	c.276C>T	c.(274-276)TGC>TGT	p.C92C	PTPN1_uc010zys.1_Silent_p.C19C	NM_002827	NP_002818	P18031	PTN1_HUMAN	protein tyrosine phosphatase, non-receptor type	92	Tyrosine-protein phosphatase.				blood coagulation|interferon-gamma-mediated signaling pathway|negative regulation of insulin receptor signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytosol|endoplasmic reticulum membrane	protein tyrosine phosphatase activity|zinc ion binding				0		Lung NSC(126;0.163)			Clodronate(DB00720)|Tiludronate(DB01133)	CTAACACATGCGGTCACTTTT	0.488												
FAM65C	140876	broad.mit.edu	37	20	49247292	49247292	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:49247292T>C	uc002xvm.2	-	2	411	c.93A>G	c.(91-93)GCA>GCG	p.A31A	FAM65C_uc010zyt.1_Silent_p.A35A|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Silent_p.A31A	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	31										ovary(2)	2						TCCGGCTCTGTGCACTGCTGA	0.662												
PARD6B	84612	broad.mit.edu	37	20	49366647	49366647	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:49366647A>G	uc002xvo.2	+	3	984	c.741A>G	c.(739-741)AGA>AGG	p.R247R		NM_032521	NP_115910	Q9BYG5	PAR6B_HUMAN	PAR-6 beta	247	PDZ.|Interaction with PARD3 and CDC42 (By similarity).				axonogenesis|cell cycle|cell division|establishment or maintenance of cell polarity|protein complex assembly|regulation of cell migration|tight junction assembly	cytosol|tight junction	protein binding			kidney(1)	1						TAACAGTGAGACCGGCAAACC	0.443												
ADNP	23394	broad.mit.edu	37	20	49509799	49509799	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:49509799T>C	uc002xvt.1	-	5	1797	c.1452A>G	c.(1450-1452)ATA>ATG	p.I484M	ADNP_uc002xvu.1_Missense_Mutation_p.I484M	NM_015339	NP_056154	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector	484						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						TAAAATTGTGTATTTTCATAA	0.373												
ADNP	23394	broad.mit.edu	37	20	49520468	49520468	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:49520468T>A	uc002xvt.1	-	3	411	c.66A>T	c.(64-66)ATA>ATT	p.I22I	ADNP_uc002xvu.1_Silent_p.I22I	NM_015339	NP_056154	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector	22						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						TGTCACTAAGTATTTTTTTCA	0.318												
KCNG1	3755	broad.mit.edu	37	20	49626525	49626525	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:49626525G>A	uc002xwa.3	-	2	646	c.351C>T	c.(349-351)TTC>TTT	p.F117F	KCNG1_uc002xwb.2_Silent_p.F117F	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	117	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						GGTTGCGGTCGAAGAAGAACT	0.647												
NFATC2	4773	broad.mit.edu	37	20	50140511	50140511	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:50140511T>C	uc002xwd.2	-	2	489	c.269A>G	c.(268-270)GAT>GGT	p.D90G	NFATC2_uc002xwc.2_Missense_Mutation_p.D90G|NFATC2_uc010zyv.1_Intron|NFATC2_uc010zyw.1_Intron|NFATC2_uc010zyx.1_Missense_Mutation_p.D70G|NFATC2_uc010zyy.1_Intron|NFATC2_uc010zyz.1_Intron|NFATC2_uc002xwe.2_Missense_Mutation_p.D70G	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	90					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					CCCTACCCTATCCGGCTCTCC	0.647												
ZFP64	55734	broad.mit.edu	37	20	50705146	50705146	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:50705146C>T	uc002xwk.2	-	8	1362	c.1013G>A	c.(1012-1014)TGC>TAC	p.C338Y	ZFP64_uc002xwj.2_Missense_Mutation_p.C119Y	NM_199427	NP_955459	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform d	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CCGGCTGAAGCACTTGTCACA	0.493												
TSHZ2	128553	broad.mit.edu	37	20	51870983	51870983	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:51870983G>T	uc002xwo.2	+	2	1942	c.986G>T	c.(985-987)CGG>CTG	p.R329L		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	329					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GATGTCAATCGGCCGTGTTCC	0.463												
ZNF217	7764	broad.mit.edu	37	20	52192756	52192756	+	Silent	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:52192756A>C	uc002xwq.3	-	3	2818	c.2547T>G	c.(2545-2547)CCT>CCG	p.P849P	ZNF217_uc010gij.1_Silent_p.P841P	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	849					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			TATCCGGTGCAGGGGAAACAC	0.522												
BMP7	655	broad.mit.edu	37	20	55758796	55758796	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:55758796G>A	uc010gip.1	-	4	1469	c.940C>T	c.(940-942)CGG>TGG	p.R314W	BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Missense_Mutation_p.R314W	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	314					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			TTGGCCATCCGCAGGGCTTCC	0.647												
SPO11	23626	broad.mit.edu	37	20	55913380	55913380	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:55913380T>C	uc002xye.2	+	9	886	c.793T>C	c.(793-795)TGG>CGG	p.W265R	SPO11_uc002xyf.2_Missense_Mutation_p.W227R	NM_012444	NP_036576	Q9Y5K1	SPO11_HUMAN	meiotic recombination protein SPO11 isoform a	265					female gamete generation|reciprocal meiotic recombination	chromosome|nucleus	ATP binding|DNA binding|hydrolase activity			breast(2)|skin(1)	3	Lung NSC(12;0.0066)|all_lung(29;0.0188)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;1.73e-14)|Epithelial(14;9.02e-10)|all cancers(14;9.31e-09)			CAAGAAACTGTGGGATACATT	0.318								Editing_and_processing_nucleases				
GNAS	2778	broad.mit.edu	37	20	57485796	57485796	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:57485796C>A	uc002xzw.2	+	13	3311	c.3026C>A	c.(3025-3027)GCT>GAT	p.A1009D	GNAS_uc002xzt.2_3'UTR|GNAS_uc010gjq.2_Missense_Mutation_p.A307D|GNAS_uc002xzx.2_Missense_Mutation_p.A307D|GNAS_uc010gjr.2_Missense_Mutation_p.A257D|GNAS_uc002xzy.2_Missense_Mutation_p.A292D|GNAS_uc002yaa.2_Missense_Mutation_p.A352D|GNAS_uc010zzt.1_Missense_Mutation_p.A367D|GNAS_uc002yab.2_RNA|GNAS_uc002yad.2_Missense_Mutation_p.A257D|GNAS_uc002yae.2_Missense_Mutation_p.A291D	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	366		GTP; via amide nitrogen (By similarity).	A -> S (in AHO; paradoxical combination of AHO and testotoxicosis; constitutively activates adenylyl cyclase in vitro; accounts for the testotoxicosis phenotype; mutant form is quite stable at testis temperature; rapidly degraded at 37 degrees explaining the AHO phenotype caused by loss of Gs activity).		activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			TTCACCTGCGCTGTGGACACT	0.572			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)		
TH1L	51497	broad.mit.edu	37	20	57561870	57561870	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:57561870G>A	uc002yag.2	+	3	292	c.265G>A	c.(265-267)GCT>ACT	p.A89T	TH1L_uc010zzu.1_Missense_Mutation_p.A89T|TH1L_uc002yaf.1_RNA|TH1L_uc002yah.2_Missense_Mutation_p.A89T	NM_198976	NP_945327	Q8IXH7	NELFD_HUMAN	TH1-like protein	89					negative regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	all_lung(29;0.00711)		Colorectal(105;0.109)			AAACTACACCGCTGTGGCCCA	0.488												
TH1L	51497	broad.mit.edu	37	20	57568057	57568057	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:57568057C>G	uc002yag.2	+	11	1288	c.1261C>G	c.(1261-1263)CCA>GCA	p.P421A	TH1L_uc002yaf.1_RNA|TH1L_uc002yah.2_Missense_Mutation_p.P421A	NM_198976	NP_945327	Q8IXH7	NELFD_HUMAN	TH1-like protein	421					negative regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	all_lung(29;0.00711)		Colorectal(105;0.109)			CTGTAGGTTTCCAGTGGTAGC	0.403												
PHACTR3	116154	broad.mit.edu	37	20	58330282	58330282	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:58330282T>C	uc002yau.2	+	4	871	c.404T>C	c.(403-405)GTA>GCA	p.V135A	PHACTR3_uc002yat.2_Missense_Mutation_p.V132A|PHACTR3_uc010zzw.1_Missense_Mutation_p.V94A|PHACTR3_uc002yav.2_Missense_Mutation_p.V94A|PHACTR3_uc002yaw.2_Missense_Mutation_p.V94A|PHACTR3_uc002yax.2_Missense_Mutation_p.V94A	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	135						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			CCCCGATCTGTACAGAGTGAA	0.582												
CDH4	1002	broad.mit.edu	37	20	60509183	60509183	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:60509183C>T	uc002ybn.1	+	15	2463	c.2449C>T	c.(2449-2451)CGT>TGT	p.R817C	CDH4_uc002ybp.1_Missense_Mutation_p.R743C	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	817	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CCCTGGCGTGCGTCGCGTGGA	0.682												
PSMA7	5688	broad.mit.edu	37	20	60714246	60714246	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:60714246G>A	uc002ybx.1	-	4	471	c.356C>T	c.(355-357)ACG>ATG	p.T119M	PSMA7_uc002yby.1_RNA	NM_002792	NP_002783	O14818	PSA7_HUMAN	proteasome alpha 7 subunit	119					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	identical protein binding|threonine-type endopeptidase activity				0	Breast(26;3.97e-09)		BRCA - Breast invasive adenocarcinoma(19;1.28e-07)			ATTGCTCTGCGTATAACGCTA	0.488												
LAMA5	3911	broad.mit.edu	37	20	60885488	60885488	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:60885488T>C	uc002ycq.2	-	76	10654	c.10587A>G	c.(10585-10587)GGA>GGG	p.G3529G		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	3529	Laminin G-like 5.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AAGTGATAACTCCCCCGCTGC	0.692												
LAMA5	3911	broad.mit.edu	37	20	60890201	60890201	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:60890201T>C	uc002ycq.2	-	59	7997	c.7930A>G	c.(7930-7932)ACC>GCC	p.T2644A		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	2644	Potential.|Domain II and I.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGCACACGGGTGGCGGTGTCC	0.672												
NTSR1	4923	broad.mit.edu	37	20	61341218	61341218	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:61341218G>A	uc002ydf.2	+	1	1030	c.659G>A	c.(658-660)GGC>GAC	p.G220D		NM_002531	NP_002522	P30989	NTR1_HUMAN	neurotensin receptor 1	220	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	neurotensin receptor activity, G-protein coupled			skin(2)|lung(1)|central_nervous_system(1)	4	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;3.63e-06)			CAGCACGCCGGCGGCCTGGTG	0.672												
DIDO1	11083	broad.mit.edu	37	20	61525226	61525226	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:61525226C>A	uc002ydr.1	-	12	3157	c.2893G>T	c.(2893-2895)GGC>TGC	p.G965C	DIDO1_uc002yds.1_Missense_Mutation_p.G965C|DIDO1_uc002ydt.1_Missense_Mutation_p.G965C|DIDO1_uc002ydu.1_Missense_Mutation_p.G965C	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	965					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GGGTCCCGGCCGGACACTGTG	0.682												
PTK6	5753	broad.mit.edu	37	20	62163998	62163998	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:62163998G>T	uc002yfg.2	-	5	753	c.713C>A	c.(712-714)GCC>GAC	p.A238D	PTK6_uc011aay.1_Missense_Mutation_p.A137D|PTK6_uc011aaz.1_5'UTR	NM_005975	NP_005966	Q13882	PTK6_HUMAN	PTK6 protein tyrosine kinase 6	238	Protein kinase.					cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|kidney(1)	2	all_cancers(38;2.51e-11)		Epithelial(9;1.5e-08)|all cancers(9;8.67e-08)|BRCA - Breast invasive adenocarcinoma(10;6.43e-06)			CTTCTTCATGGCCTGGATCTC	0.652												
PRIC285	85441	broad.mit.edu	37	20	62200870	62200870	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:62200870C>T	uc002yfm.2	-	5	1611	c.719G>A	c.(718-720)CGT>CAT	p.R240H	PRIC285_uc002yfl.1_5'Flank	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	240					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			AGCCTGCACACGCACTCCCAC	0.672												
GMEB2	26205	broad.mit.edu	37	20	62250679	62250679	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:62250679G>A	uc002yfp.1	-	1	551	c.72C>T	c.(70-72)GAC>GAT	p.D24D	GMEB2_uc002yfq.1_Silent_p.D24D	NM_012384	NP_036516	Q9UKD1	GMEB2_HUMAN	glucocorticoid modulatory element binding	24				DGSGVEGVKTVLVTTNLAPHG -> CPAGCALRDPDSILSS LHFTR (in Ref. 6).	regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|metal ion binding				0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;4.79e-09)|all cancers(9;2.76e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.0114)			CACCACTGCCGTCCACTGCAG	0.647												
PCMTD2	55251	broad.mit.edu	37	20	62904640	62904640	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:62904640T>C	uc002yil.3	+	6	973	c.773T>C	c.(772-774)ATT>ACT	p.I258T	PCMTD2_uc002yim.3_Missense_Mutation_p.I231T	NM_018257	NP_060727	Q9NV79	PCMD2_HUMAN	protein-L-isoaspartate (D-aspartate)	258						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					ATTAAAAAGATTATTCATCAG	0.512												
TPTE	7179	broad.mit.edu	37	21	10916386	10916386	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:10916386A>G	uc002yip.1	-	20	1628	c.1260T>C	c.(1258-1260)ATT>ATC	p.I420I	TPTE_uc002yis.1_Intron|TPTE_uc002yiq.1_Silent_p.I402I|TPTE_uc002yir.1_Silent_p.I382I|TPTE_uc010gkv.1_Silent_p.I282I	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	420	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TCGAATAAATAATGAAGTGTT	0.383												
TPTE	7179	broad.mit.edu	37	21	10971316	10971316	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:10971316A>C	uc002yip.1	-	5	409	c.41T>G	c.(40-42)ATC>AGC	p.I14S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.I14S|TPTE_uc002yir.1_Missense_Mutation_p.I14S|TPTE_uc010gkv.1_Intron	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	14					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GAGCTCAATGATGACTCCCGC	0.323												
HSPA13	6782	broad.mit.edu	37	21	15746385	15746385	+	Silent	SNP	A	A	G	rs138306035	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:15746385A>G	uc002yjt.2	-	5	1038	c.969T>C	c.(967-969)AGT>AGC	p.S323S	HSPA13_uc011abx.1_Silent_p.S115S	NM_006948	NP_008879	P48723	HSP13_HUMAN	heat shock protein 70kDa family member 13	323						endoplasmic reticulum|microsome	ATP binding			kidney(1)	1						CAGTGTCACTACTGTGAGGTT	0.448												
USP25	29761	broad.mit.edu	37	21	17191087	17191087	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:17191087T>C	uc002yjy.1	+	10	1219	c.1002T>C	c.(1000-1002)CAT>CAC	p.H334H	USP25_uc011aby.1_Silent_p.H334H|USP25_uc002yjz.1_Silent_p.H334H|USP25_uc010gla.1_Intron	NM_013396	NP_037528	Q9UHP3	UBP25_HUMAN	ubiquitin specific peptidase 25	334					protein modification process|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)|liver(2)	5				Epithelial(23;7.55e-05)|all cancers(11;0.000429)|COAD - Colon adenocarcinoma(22;0.00543)|OV - Ovarian serous cystadenocarcinoma(11;0.00743)|Colorectal(24;0.0116)|Lung(58;0.0853)|LUSC - Lung squamous cell carcinoma(23;0.0889)		AAGATCTGCATGAGTGCCTAG	0.358												
TMPRSS15	5651	broad.mit.edu	37	21	19666595	19666595	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:19666595G>A	uc002ykw.2	-	21	2509	c.2478C>T	c.(2476-2478)TGC>TGT	p.C826C		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	826	Extracellular (Potential).|Peptidase S1.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						ACCCATACACGCAGTGTGCGG	0.582												
GABPA	2551	broad.mit.edu	37	21	27136558	27136558	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:27136558A>G	uc002ylx.3	+	8	1367	c.840A>G	c.(838-840)ACA>ACG	p.T280T	GABPA_uc002yly.3_Silent_p.T280T	NM_002040	NP_002031	Q06546	GABPA_HUMAN	GA binding protein transcription factor, alpha	280					positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	protein heterodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding			ovary(1)|central_nervous_system(1)	2						AATCTGCTACACCTACTACCA	0.383												
CYYR1	116159	broad.mit.edu	37	21	27938613	27938613	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:27938613A>T	uc002ymd.2	-	2	470	c.148T>A	c.(148-150)TAC>AAC	p.Y50N	CYYR1_uc011ack.1_RNA|CYYR1_uc002yme.2_Missense_Mutation_p.Y50N	NM_052954	NP_443186	Q96J86	CYYR1_HUMAN	cysteine and tyrosine-rich 1 protein precursor	50	Extracellular (Potential).					integral to membrane					0						TAAGCGTAGTAGGAGCAACAG	0.423												
ADAMTS5	11096	broad.mit.edu	37	21	28315800	28315800	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:28315800T>C	uc002ymg.2	-	3	2033	c.1304A>G	c.(1303-1305)GAT>GGT	p.D435G		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	435	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						TAAGCGCTTATCTTCTGTGGA	0.453												
ADAMTS5	11096	broad.mit.edu	37	21	28338270	28338270	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:28338270G>A	uc002ymg.2	-	1	1170	c.441C>T	c.(439-441)GAC>GAT	p.D147D		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	147					proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						CCCCACAGAGGTCAAAGACAG	0.677												
RWDD2B	10069	broad.mit.edu	37	21	30380115	30380115	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:30380115C>T	uc002yms.2	-	4	779	c.692G>A	c.(691-693)GGC>GAC	p.G231D	RWDD2B_uc002ymt.2_Missense_Mutation_p.G202D|RWDD2B_uc002ymu.2_RNA|RWDD2B_uc002ymv.2_Missense_Mutation_p.G151D	NM_016940	NP_058636	P57060	RWD2B_HUMAN	RWD domain containing 2B	231											0						ACTTTGTGGGCCTTCCACACA	0.363												
RWDD2B	10069	broad.mit.edu	37	21	30380209	30380209	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:30380209T>C	uc002yms.2	-	4	685	c.598A>G	c.(598-600)AAA>GAA	p.K200E	RWDD2B_uc002ymt.2_Missense_Mutation_p.K171E|RWDD2B_uc002ymu.2_RNA|RWDD2B_uc002ymv.2_Missense_Mutation_p.K120E	NM_016940	NP_058636	P57060	RWD2B_HUMAN	RWD domain containing 2B	200											0						CTTTTGCATTTGTTATAGATA	0.463												
BACH1	571	broad.mit.edu	37	21	30693734	30693734	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:30693734T>C	uc002ynj.2	+	2	248	c.133T>C	c.(133-135)TTC>CTC	p.F45L	BACH1_uc002ynk.2_Missense_Mutation_p.F45L|BACH1_uc002ynl.2_RNA	NM_001186	NP_001177	O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor	45	BTB.					nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						GGGACAGCGGTTCCGCGCTCA	0.517												
GRIK1	2897	broad.mit.edu	37	21	30961219	30961219	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:30961219T>C	uc002yno.1	-	11	1973	c.1509A>G	c.(1507-1509)AAA>AAG	p.K503K	GRIK1_uc002ynn.2_Silent_p.K488K|GRIK1_uc011acs.1_Silent_p.K503K|GRIK1_uc011act.1_Intron|GRIK1_uc010glq.1_Silent_p.K346K	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	503	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	GGGCCCCATATTTGCCATCGG	0.373												
KRTAP24-1	643803	broad.mit.edu	37	21	31654914	31654914	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:31654914T>A	uc002ynv.2	-	1	363	c.337A>T	c.(337-339)AGC>TGC	p.S113C		NM_001085455	NP_001078924	Q3LI83	KR241_HUMAN	keratin associated protein 24-1	113						keratin filament	structural molecule activity				0						gggctggggctgacgttggTA	0.408												
KRTAP21-2	337978	broad.mit.edu	37	21	32119274	32119274	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:32119274A>G	uc011adh.1	-	1	247	c.247T>C	c.(247-249)TAC>CAC	p.Y83H		NM_181617	NP_853648	Q3LI59	KR212_HUMAN	keratin associated protein 21-2	83						intermediate filament					0						GATGATTAGTAGCAAGAGGAA	0.343												
SFRS15	57466	broad.mit.edu	37	21	33057462	33057462	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:33057462G>A	uc002ypd.2	-	19	2814	c.2388C>T	c.(2386-2388)GCC>GCT	p.A796A	SFRS15_uc002ype.2_Silent_p.A774A|SFRS15_uc010glu.2_Silent_p.A781A|SFRS15_uc002ypf.1_Silent_p.A470A	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	796						nucleus	nucleotide binding|RNA binding				0						CACCAGACTCGGCGTTTCCTC	0.498												
HUNK	30811	broad.mit.edu	37	21	33346910	33346910	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:33346910A>G	uc002yph.2	+	7	1414	c.1054A>G	c.(1054-1056)ACC>GCC	p.T352A		NM_014586	NP_055401	P57058	HUNK_HUMAN	hormonally upregulated Neu-associated kinase	352					multicellular organismal development|signal transduction		ATP binding|protein serine/threonine kinase activity			stomach(1)|skin(1)	2						GCTGCACATGACCGAGAAGCT	0.557												
MRAP	56246	broad.mit.edu	37	21	33686877	33686877	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:33686877A>G	uc002ypk.2	+	5	409	c.222A>G	c.(220-222)GAA>GAG	p.E74E	URB1_uc002ypn.2_3'UTR	NM_206898	NP_996781	Q8TCY5	MRAP_HUMAN	melanocortin 2 receptor accessory protein	Error:Variant_position_missing_in_Q8TCY5_after_alignment					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|integral to membrane|perinuclear region of cytoplasm|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding				0						ACACAGATGAATCTCTTCTGC	0.388												
C21orf59	56683	broad.mit.edu	37	21	33976433	33976433	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:33976433A>G	uc002yqc.2	-	4	647	c.534_splice	c.e4+1	p.Q178_splice	C21orf59_uc002ypx.1_Splice_Site_p.Q71_splice|C21orf59_uc002ypy.1_Splice_Site_p.Q178_splice|C21orf59_uc002ypz.1_Splice_Site_p.Q178_splice|C21orf59_uc010glx.2_Splice_Site_p.Q79_splice|C21orf59_uc002yqd.2_Splice_Site_p.Q178_splice|C21orf59_uc002yqa.3_Intron|C21orf59_uc002yqb.3_Splice_Site_p.Q178_splice|C21orf59_uc011adr.1_Splice_Site_p.Q122_splice	NM_021254	NP_067077	P57076	CU059_HUMAN	hypothetical protein LOC56683							cytosol|nucleus					0						CAAACTACGTACCTGTGTTCC	0.507												
GART	2618	broad.mit.edu	37	21	34876757	34876757	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:34876757C>T	uc002yrx.2	-	21	2938	c.2803G>A	c.(2803-2805)GGA>AGA	p.G935R	GART_uc002yrz.2_Missense_Mutation_p.G935R|GART_uc010gmd.2_Missense_Mutation_p.G597R|GART_uc002yry.2_Missense_Mutation_p.G935R	NM_000819	NP_000810	P22102	PUR2_HUMAN	phosphoribosylglycinamide formyltransferase,	935	GART.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|metal ion binding|methyltransferase activity|phosphoribosylamine-glycine ligase activity|phosphoribosylformylglycinamidine cyclo-ligase activity|phosphoribosylglycinamide formyltransferase activity|protein binding			ovary(1)	1					Pemetrexed(DB00642)	ACTGTGACTCCGGTTTCCAGG	0.398												
SON	6651	broad.mit.edu	37	21	34922190	34922190	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:34922190C>A	uc002yse.1	+	3	702	c.653C>A	c.(652-654)TCT>TAT	p.S218Y	SON_uc002ysb.1_Missense_Mutation_p.S218Y|SON_uc002ysc.2_Missense_Mutation_p.S218Y|SON_uc002ysd.2_5'UTR|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	218					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						TCAGTTGTATCTACATCAGTA	0.458											OREG0003564	type=REGULATORY REGION|Gene=AK074269|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay
SON	6651	broad.mit.edu	37	21	34927628	34927628	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:34927628T>C	uc002yse.1	+	3	6140	c.6091T>C	c.(6091-6093)TCT>CCT	p.S2031P	SON_uc002ysb.1_Missense_Mutation_p.S2031P|SON_uc002ysc.2_Missense_Mutation_p.S2031P|SON_uc002ysd.2_Missense_Mutation_p.S1022P|SON_uc002ysf.1_Intron|SON_uc002ysg.2_Missense_Mutation_p.S1022P	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	2031	3 X tandem repeats of [ST]-P-[VLI]-R- [RL]-[RK]-[RF]-S-R.				anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						GTTTAGCAGATCTCCCATCCG	0.433												
SON	6651	broad.mit.edu	37	21	34931991	34931991	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:34931991T>C	uc002yse.1	+	6	6616	c.6567T>C	c.(6565-6567)GAT>GAC	p.D2189D	SON_uc002ysc.2_Silent_p.D2189D|SON_uc002ysd.2_Silent_p.D1180D|SON_uc002ysf.1_Silent_p.D217D|SON_uc002ysg.2_Silent_p.D1180D	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	2189					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						AAGAAGCGGATAGTGTTTATG	0.398												
MRPS6	64968	broad.mit.edu	37	21	35497669	35497669	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:35497669C>T	uc002ytp.2	+	2	252	c.74C>T	c.(73-75)ACG>ATG	p.T25M		NM_032476	NP_115865	P82932	RT06_HUMAN	mitochondrial ribosomal protein S6	25					translation	mitochondrion|small ribosomal subunit	rRNA binding|structural constituent of ribosome			skin(1)	1						TTGAAACGTACGATAGAGGCC	0.423												
TTC3	7267	broad.mit.edu	37	21	38538528	38538528	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:38538528G>A	uc002yvz.2	+	33	4117	c.4012G>A	c.(4012-4014)GTG>ATG	p.V1338M	TTC3_uc011aee.1_Missense_Mutation_p.V1028M|TTC3_uc002ywa.2_Missense_Mutation_p.V1338M|TTC3_uc002ywb.2_Missense_Mutation_p.V1338M|TTC3_uc010gnf.2_Missense_Mutation_p.V1103M|TTC3_uc002ywc.2_Missense_Mutation_p.V1028M|TTC3_uc002ywd.1_Missense_Mutation_p.V402M	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1338					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				ATACATAAACGTGTTACCAGG	0.468												
TTC3	7267	broad.mit.edu	37	21	38538886	38538886	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:38538886A>G	uc002yvz.2	+	33	4475	c.4370A>G	c.(4369-4371)AAC>AGC	p.N1457S	TTC3_uc011aee.1_Missense_Mutation_p.N1147S|TTC3_uc002ywa.2_Missense_Mutation_p.N1457S|TTC3_uc002ywb.2_Missense_Mutation_p.N1457S|TTC3_uc010gnf.2_Missense_Mutation_p.N1222S|TTC3_uc002ywc.2_Missense_Mutation_p.N1147S|TTC3_uc002ywd.1_Missense_Mutation_p.N521S	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1457					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				GCAGTAACAAACATTCCACAC	0.368												
DYRK1A	1859	broad.mit.edu	37	21	38862610	38862610	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:38862610G>A	uc002ywk.2	+	6	873	c.798G>A	c.(796-798)GCG>GCA	p.A266A	DYRK1A_uc002ywi.2_Silent_p.A266A|DYRK1A_uc002ywj.2_Silent_p.A257A|DYRK1A_uc002ywl.2_Silent_p.A266A|DYRK1A_uc002ywm.2_Silent_p.A266A|DYRK1A_uc011aei.1_Silent_p.A27A	NM_001396	NP_001387	Q13627	DYR1A_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	266	Protein kinase.			A -> V (in Ref. 6; CAA05059).	nervous system development|peptidyl-tyrosine phosphorylation|protein autophosphorylation	nuclear speck	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|protein self-association|protein serine/threonine kinase activity			ovary(2)|lung(1)|breast(1)	4						GAAAGTTTGCGCAACAGATGT	0.413												
KCNJ15	3772	broad.mit.edu	37	21	39671704	39671704	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:39671704G>A	uc002ywv.2	+	4	823	c.521G>A	c.(520-522)CGG>CAG	p.R174Q	KCNJ15_uc002yww.2_Missense_Mutation_p.R174Q|KCNJ15_uc002ywx.2_Missense_Mutation_p.R174Q	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	174	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						CCCAAAAAGCGGGCTGAGACC	0.507												
BRWD1	54014	broad.mit.edu	37	21	40578152	40578152	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:40578152T>C	uc002yxk.1	-	37	4385	c.4246A>G	c.(4246-4248)AAG>GAG	p.K1416E	BRWD1_uc010goc.1_Missense_Mutation_p.K59E|BRWD1_uc002yxl.2_Missense_Mutation_p.K1416E|BRWD1_uc010god.1_Missense_Mutation_p.K334E	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	1416					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				GAGATTTTCTTCATTTTTTCT	0.303												
DSCAM	1826	broad.mit.edu	37	21	41457677	41457677	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:41457677A>G	uc002yyq.1	-	23	4436	c.3984T>C	c.(3982-3984)AGT>AGC	p.S1328S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1328	Extracellular (Potential).|Ig-like C2-type 10.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCGTTACTAGACTGGGTGTCC	0.453												
FAM3B	54097	broad.mit.edu	37	21	42710359	42710359	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:42710359C>G	uc002yzb.1	+	3	364	c.218C>G	c.(217-219)ACC>AGC	p.T73S	FAM3B_uc002yza.2_RNA|FAM3B_uc002yzc.1_Missense_Mutation_p.T25S|FAM3B_uc002yzd.1_Missense_Mutation_p.T96S|FAM3B_uc011aeq.1_Missense_Mutation_p.T87S	NM_058186	NP_478066	P58499	FAM3B_HUMAN	family with sequence similarity 3, member B	73					apoptosis|insulin secretion	extracellular space	cytokine activity				0		Prostate(19;1.57e-07)|all_epithelial(19;0.0404)				CCATCTGACACCTATGCCTAC	0.443												
MX2	4600	broad.mit.edu	37	21	42780121	42780121	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:42780121A>G	uc002yzf.1	+	14	2213	c.2109A>G	c.(2107-2109)CGA>CGG	p.R703R	MX2_uc002yzg.1_Silent_p.R426R|MX2_uc010gop.1_Silent_p.R185R	NM_002463	NP_002454	P20592	MX2_HUMAN	myxovirus resistance protein 2	703	GED.				response to virus|type I interferon-mediated signaling pathway	cytoplasm|nucleus	GTP binding|GTPase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0222)				CTCAGGCGCGACACGCACTCT	0.498												
RIPK4	54101	broad.mit.edu	37	21	43161503	43161503	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:43161503T>C	uc002yzn.1	-	8	1898	c.1850A>G	c.(1849-1851)TAC>TGC	p.Y617C		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	617						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						GGCCACGCGGTAGTGCCCGCG	0.687												
RIPK4	54101	broad.mit.edu	37	21	43169342	43169342	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:43169342G>A	uc002yzn.1	-	4	693	c.645C>T	c.(643-645)GGC>GGT	p.G215G		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	215						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						GTGTGAGCACGCCCCAGATGA	0.517												
PKNOX1	5316	broad.mit.edu	37	21	44448901	44448901	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:44448901A>G	uc002zcq.1	+	10	1204	c.1016A>G	c.(1015-1017)AAC>AGC	p.N339S	PKNOX1_uc002zcp.1_Missense_Mutation_p.N339S|PKNOX1_uc011aex.1_Missense_Mutation_p.N222S	NM_004571	NP_004562	P55347	PKNX1_HUMAN	PBX/knotted 1 homeobox 1	339							sequence-specific DNA binding			large_intestine(2)	2						ACTGCTCAGAACCGGCCAGTT	0.512												
SIK1	150094	broad.mit.edu	37	21	44840207	44840207	+	Silent	SNP	G	G	A	rs138160311	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:44840207G>A	uc002zdf.2	-	8	1006	c.879C>T	c.(877-879)TCC>TCT	p.S293S		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	293					anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						AGCTGTGTGCGGAGAAGGCGG	0.692												
HSF2BP	11077	broad.mit.edu	37	21	45050308	45050308	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:45050308T>C	uc002zdi.2	-	6	801	c.469A>G	c.(469-471)ACT>GCT	p.T157A	HSF2BP_uc011aey.1_Missense_Mutation_p.T82A	NM_007031	NP_008962	O75031	HSF2B_HUMAN	heat shock transcription factor 2 binding	157					spermatogenesis|transcription from RNA polymerase II promoter	cytosol	binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.18)		GTTTGACCAGTGATGCTGAAA	0.388												
PDXK	8566	broad.mit.edu	37	21	45163690	45163690	+	Splice_Site	SNP	T	T	C	rs111245794		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:45163690T>C	uc002zdm.3	+	4	529	c.331_splice	c.e4+2	p.V111_splice	PDXK_uc010gpj.2_Splice_Site_p.V111_splice|PDXK_uc002zdn.3_Intron|PDXK_uc002zdq.3_Splice_Site_p.V38_splice	NM_003681	NP_003672	O00764	PDXK_HUMAN	pyridoxal kinase						cell proliferation|pyridoxal 5'-phosphate salvage	cytosol	ATP binding|lithium ion binding|magnesium ion binding|potassium ion binding|protein homodimerization activity|pyridoxal kinase activity|pyridoxal phosphate binding|sodium ion binding|zinc ion binding				0				Colorectal(79;0.109)|READ - Rectum adenocarcinoma(84;0.161)|STAD - Stomach adenocarcinoma(101;0.18)	Pyridoxal(DB00147)|Pyridoxine(DB00165)	TGGTGTACGGTAGGCAGGGGC	0.632												
TRAPPC10	7109	broad.mit.edu	37	21	45509730	45509730	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:45509730C>T	uc002zea.2	+	18	2955	c.2786C>T	c.(2785-2787)CCG>CTG	p.P929L	TRAPPC10_uc010gpo.2_Missense_Mutation_p.P640L|TRAPPC10_uc011afa.1_Missense_Mutation_p.P307L|TRAPPC10_uc011afb.1_Missense_Mutation_p.P34L	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	929					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						ATTGACTGCCCGTGGTCCATC	0.592												
C21orf29	54084	broad.mit.edu	37	21	45941907	45941907	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:45941907G>A	uc002zfe.1	-	9	1491	c.1425C>T	c.(1423-1425)GGC>GGT	p.G475G	C21orf29_uc010gpv.1_Silent_p.G407G	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	475	EAR 4.				cell adhesion	extracellular region	structural molecule activity				0						AGTCGTAGGCGCCGGAGGTGG	0.602												
KRTAP10-3	386682	broad.mit.edu	37	21	45978566	45978566	+	Silent	SNP	G	G	A	rs144613025	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:45978566G>A	uc002zfj.1	-	1	78	c.33C>T	c.(31-33)AGC>AGT	p.S11S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198696	NP_941969	P60369	KR103_HUMAN	keratin associated protein 10-3	11						keratin filament				skin(1)	1						CAGAGTAAGCGCTGGAGCAGA	0.577												
UBE2G2	7327	broad.mit.edu	37	21	46208000	46208000	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:46208000C>T	uc002zfy.2	-	2	129	c.54G>A	c.(52-54)CTG>CTA	p.L18L	UBE2G2_uc002zfx.2_5'UTR	NM_003343	NP_003334	P60604	UB2G2_HUMAN	ubiquitin-conjugating enzyme E2G 2 isoform 1	18					protein K48-linked ubiquitination	cytosol	ATP binding|protein binding|ubiquitin-protein ligase activity			breast(3)|central_nervous_system(1)	4				Colorectal(79;0.0638)		CCGGAGGATTCAGTGTTAATT	0.279												
ITGB2	3689	broad.mit.edu	37	21	46323290	46323290	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:46323290G>A	uc002zgd.2	-	4	533	c.489C>T	c.(487-489)TCC>TCT	p.S163S	ITGB2_uc002zge.2_Silent_p.S163S|ITGB2_uc002zgf.3_Silent_p.S163S|ITGB2_uc011afl.1_Silent_p.S85S|ITGB2_uc010gpw.2_Intron|ITGB2_uc002zgg.2_Silent_p.S163S	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	163	Extracellular (Potential).|VWFA.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	CAATGCGGCCGGACTCGGTGA	0.597												
ITGB2	3689	broad.mit.edu	37	21	46323305	46323305	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:46323305G>A	uc002zgd.2	-	4	518	c.474C>T	c.(472-474)AAC>AAT	p.N158N	ITGB2_uc002zge.2_Silent_p.N158N|ITGB2_uc002zgf.3_Silent_p.N158N|ITGB2_uc011afl.1_Silent_p.N80N|ITGB2_uc010gpw.2_Intron|ITGB2_uc002zgg.2_Silent_p.N158N	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	158	Extracellular (Potential).|VWFA.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	CGGTGATCTCGTTGAGGGCCC	0.592												
ITGB2	3689	broad.mit.edu	37	21	46323369	46323369	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:46323369T>C	uc002zgd.2	-	4	454	c.410A>G	c.(409-411)TAC>TGC	p.Y137C	ITGB2_uc002zge.2_Missense_Mutation_p.Y137C|ITGB2_uc002zgf.3_Missense_Mutation_p.Y137C|ITGB2_uc011afl.1_Missense_Mutation_p.Y59C|ITGB2_uc010gpw.2_Intron|ITGB2_uc002zgg.2_Missense_Mutation_p.Y137C	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	137	Extracellular (Potential).|VWFA.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	AAGCATGGAGTAGGAGAGGTC	0.617												
MCM3AP	8888	broad.mit.edu	37	21	47676879	47676879	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:47676879G>A	uc002zir.1	-	17	3792	c.3756C>T	c.(3754-3756)GCC>GCT	p.A1252A	MCM3AP_uc002zip.1_5'UTR|MCM3AP_uc002ziq.1_Silent_p.A179A	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	1252					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					GTTTCTTGCGGGCTGTGACAG	0.587												
MCM3AP	8888	broad.mit.edu	37	21	47704983	47704983	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:47704983A>G	uc002zir.1	-	1	254	c.218T>C	c.(217-219)TTA>TCA	p.L73S	C21orf57_uc002zit.1_5'Flank|C21orf57_uc002ziu.1_5'Flank|C21orf57_uc002ziv.2_5'Flank|C21orf57_uc002ziw.2_5'Flank|C21orf57_uc002zix.2_5'Flank|C21orf57_uc010gqh.2_5'Flank|C21orf57_uc002ziy.2_5'Flank	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	73					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					GGTGAACCCTAATGTTTGCAC	0.488												
PCNT	5116	broad.mit.edu	37	21	47786508	47786508	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:47786508G>T	uc002zji.3	+	15	2726	c.2619G>T	c.(2617-2619)GAG>GAT	p.E873D	PCNT_uc002zjj.2_Missense_Mutation_p.E755D	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	873					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GGTTTTTAGAGGAACGTAAAG	0.512												
PCNT	5116	broad.mit.edu	37	21	47822252	47822252	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:47822252A>G	uc002zji.3	+	27	5077	c.4970A>G	c.(4969-4971)GAC>GGC	p.D1657G	PCNT_uc002zjj.2_Missense_Mutation_p.D1539G	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1657	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					AAGGTTTTGGACTTAAAAGAA	0.244												
POTEH	23784	broad.mit.edu	37	22	16279249	16279249	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:16279249A>G	uc010gqp.2	-	4	1026	c.974T>C	c.(973-975)GTG>GCG	p.V325A	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Missense_Mutation_p.V44A|POTEH_uc002zlj.1_Missense_Mutation_p.V160A	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	325	ANK 5.									skin(1)	1						TAAAAATTTCACCACTTGCTG	0.328												
IL17RA	23765	broad.mit.edu	37	22	17590314	17590314	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:17590314G>A	uc002zly.2	+	13	2338	c.2205G>A	c.(2203-2205)GCG>GCA	p.A735A	IL17RA_uc010gqt.2_Silent_p.A683A	NM_014339	NP_055154	Q96F46	I17RA_HUMAN	interleukin 17A receptor precursor	735	Cytoplasmic (Potential).				fibroblast activation|positive regulation of interleukin-23 production	integral to plasma membrane	interleukin-17 receptor activity			skin(2)	2		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.241)		CCCCCATGGCGTCTCCTGACC	0.682												
CECR5	27440	broad.mit.edu	37	22	17619200	17619200	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:17619200T>C	uc002zmf.2	-	8	1011	c.983A>G	c.(982-984)TAC>TGC	p.Y328C	CECR5_uc002zmd.2_Missense_Mutation_p.Y139C|CECR5_uc002zme.2_Missense_Mutation_p.Y120C|CECR5_uc002zmg.2_Missense_Mutation_p.Y128C|CECR5_uc002zmh.2_Missense_Mutation_p.Y298C	NM_033070	NP_149061	Q9BXW7	CECR5_HUMAN	cat eye syndrome chromosome region, candidate 5	328							hydrolase activity				0		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)				CTTCTGCAGGTACTGGTGGAA	0.572												
CECR1	51816	broad.mit.edu	37	22	17670900	17670900	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:17670900C>T	uc002zmk.1	-	5	1116	c.904G>A	c.(904-906)GCA>ACA	p.A302T	CECR1_uc010gqu.1_Missense_Mutation_p.A302T|CECR1_uc011agi.1_Missense_Mutation_p.A260T|CECR1_uc011agj.1_3'UTR|CECR1_uc002zmj.1_Missense_Mutation_p.A61T	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	302					adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				ATGGATTCTGCGATGACAGCC	0.577												
CECR1	51816	broad.mit.edu	37	22	17684503	17684503	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:17684503A>G	uc002zmk.1	-	3	915	c.703T>C	c.(703-705)TTC>CTC	p.F235L	CECR1_uc010gqu.1_Missense_Mutation_p.F235L|CECR1_uc011agi.1_Missense_Mutation_p.F193L|CECR1_uc011agj.1_Missense_Mutation_p.F193L	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	235					adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				TCCTCGTAGAACTCCTGCATG	0.532												
CECR2	27443	broad.mit.edu	37	22	18018207	18018207	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:18018207A>G	uc010gqw.1	+	10	1299	c.1173_splice	c.e10-2	p.L391_splice	CECR2_uc010gqv.1_Splice_Site_p.L250_splice|CECR2_uc002zml.2_Splice_Site_p.L250_splice|CECR2_uc002zmn.2_Splice_Site_p.L10_splice	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2						chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		TGTGATTTACAGCTTTGAGTT	0.388												
SLC25A18	83733	broad.mit.edu	37	22	18070770	18070770	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:18070770G>A	uc002zmp.1	+	9	1149	c.655G>A	c.(655-657)GCG>ACG	p.A219T	SLC25A18_uc010gqx.2_Missense_Mutation_p.A219T|SLC25A18_uc002zmq.1_Missense_Mutation_p.A219T	NM_031481	NP_113669	Q9H1K4	GHC2_HUMAN	solute carrier	219	Solcar 3.					integral to membrane|mitochondrial inner membrane	binding|symporter activity				0				Lung(27;0.124)	L-Glutamic Acid(DB00142)	CGCCGGTAAGGCGTCCTTTGC	0.527												
TUBA8	51807	broad.mit.edu	37	22	18613870	18613870	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:18613870G>A	uc002znv.1	+	5	1390	c.1317G>A	c.(1315-1317)TCG>TCA	p.S439S	TUBA8_uc002znr.2_Silent_p.S373S|TUBA8_uc002znw.1_Silent_p.S463S|TUBA8_uc002znx.1_Intron	NM_018943	NP_061816	Q9NY65	TBA8_HUMAN	tubulin, alpha 8	439					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0						GGACTGATTCGTTTGAAGAAG	0.433												
USP18	11274	broad.mit.edu	37	22	18644674	18644674	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:18644674C>A	uc002zny.2	+	4	710	c.372C>A	c.(370-372)GCC>GCA	p.A124A		NM_017414	NP_059110	Q9UMW8	UBP18_HUMAN	ubiquitin specific protease 18	124					regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway|ubiquitin-dependent protein catabolic process	cytosol|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			breast(1)	1						TGGAGCTGGCCTACTGCCTGC	0.592												
DGCR2	9993	broad.mit.edu	37	22	19028790	19028790	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:19028790C>T	uc002zoq.1	-	9	1425	c.1177G>A	c.(1177-1179)GGC>AGC	p.G393S	DGCR2_uc002zor.1_Missense_Mutation_p.G169S|DGCR2_uc011agr.1_Missense_Mutation_p.G349S	NM_005137	NP_005128	P98153	IDD_HUMAN	integral membrane protein DGCR2 precursor	393	Cytoplasmic (Potential).				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			large_intestine(1)	1	Colorectal(54;0.0993)					ATCCTGCGGCCGAGGTTGAAG	0.622												
CDC45	8318	broad.mit.edu	37	22	19470330	19470330	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:19470330A>G	uc002zpr.2	+	4	398	c.322A>G	c.(322-324)AAT>GAT	p.N108D	CDC45_uc011agz.1_Missense_Mutation_p.N103D|CDC45_uc011aha.1_Missense_Mutation_p.N108D|CDC45_uc002zps.2_Missense_Mutation_p.N108D|CDC45_uc002zpt.2_Intron	NM_003504	NP_003495	O75419	CDC45_HUMAN	CDC45-like	108					DNA replication checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	centrosome|nucleoplasm	protein binding			lung(1)	1						CAATGTCGTCAATGTATACAA	0.408												
COMT	1312	broad.mit.edu	37	22	19950294	19950294	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:19950294A>G	uc002zqu.2	+	3	494	c.245A>G	c.(244-246)TAC>TGC	p.Y82C	COMT_uc002zqt.2_Missense_Mutation_p.Y82C|COMT_uc002zqv.2_Missense_Mutation_p.Y82C|COMT_uc002zqw.2_Missense_Mutation_p.Y82C|COMT_uc011ahd.1_Missense_Mutation_p.Y82C|COMT_uc002zqx.2_Missense_Mutation_p.Y82C	NM_000754	NP_000745	P21964	COMT_HUMAN	catechol-O-methyltransferase isoform MB-COMT	82					neurotransmitter biosynthetic process|neurotransmitter catabolic process|xenobiotic metabolic process	cytosol|integral to membrane|intracellular membrane-bounded organelle|microsome|plasma membrane|soluble fraction	catechol O-methyltransferase activity|magnesium ion binding|protein binding			ovary(1)	1	Colorectal(54;0.0993)				Carbidopa(DB00190)|Conjugated Estrogens(DB00286)|Diethylstilbestrol(DB00255)|Dobutamine(DB00841)|Dopamine(DB00988)|Entacapone(DB00494)|Folic Acid(DB00158)|L-Valine(DB00161)|Levodopa(DB01235)|Methyldopa(DB00968)|Modafinil(DB00745)|Morphine(DB00295)|S-Adenosylmethionine(DB00118)|Tolcapone(DB00323)	ATTGACACCTACTGCGAGCAG	0.637												
ZDHHC8	29801	broad.mit.edu	37	22	20127090	20127090	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:20127090T>C	uc002zrq.2	+	3	422	c.316T>C	c.(316-318)TGT>CGT	p.C106R	ZDHHC8_uc002zrr.1_Missense_Mutation_p.C106R|ZDHHC8_uc010gsa.2_Missense_Mutation_p.C4R	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	106	Cytoplasmic (Potential).|DHHC-type.					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					CATGAAGTGGTGTGCCACGTG	0.637												
DGCR6L	85359	broad.mit.edu	37	22	20303653	20303653	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:20303653G>A	uc002zrx.2	-	3	458	c.361C>T	c.(361-363)CGA>TGA	p.R121*	DGCR6L_uc010gsb.2_Intron|DGCR6L_uc010gsc.2_Nonsense_Mutation_p.R121*	NM_033257	NP_150282	Q9BY27	DGC6L_HUMAN	DiGeorge syndrome critical region gene 6 like	121	Potential.					nucleus					0	Colorectal(54;0.0993)					TCTAGTTCTCGCTGCTGAGCC	0.687												
ZNF74	7625	broad.mit.edu	37	22	20760494	20760494	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:20760494G>A	uc010gsm.2	+	6	1383	c.1171G>A	c.(1171-1173)GGC>AGC	p.G391S	ZNF74_uc002zsg.2_Missense_Mutation_p.G320S|ZNF74_uc002zsh.2_Missense_Mutation_p.G391S|ZNF74_uc002zsi.2_Missense_Mutation_p.G320S|ZNF74_uc010gsn.2_Missense_Mutation_p.G320S	NM_003426	NP_003417	Q16587	ZNF74_HUMAN	zinc finger protein 74	391	C2H2-type 6.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|nucleus	DNA binding|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.0025)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)|all_lung(157;0.248)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			CTACCAGTGCGGCTCCTGCGG	0.642												
MED15	51586	broad.mit.edu	37	22	20891434	20891434	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:20891434A>G	uc002zsp.2	+	2	179	c.99A>G	c.(97-99)GCA>GCG	p.A33A	MED15_uc002zsn.1_5'UTR|MED15_uc002zso.2_Silent_p.A33A|MED15_uc002zsq.2_Silent_p.A33A|MED15_uc010gso.2_Silent_p.A33A|MED15_uc002zsr.2_Silent_p.A7A|MED15_uc011ahs.1_Silent_p.A7A|MED15_uc011aht.1_Silent_p.A7A	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	33	Interaction with SREBF1.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			CTGGTGTGGCACACAGTAAAT	0.547												
MED15	51586	broad.mit.edu	37	22	20929471	20929471	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:20929471C>T	uc002zsp.2	+	9	1304	c.1224C>T	c.(1222-1224)TCC>TCT	p.S408S	MED15_uc002zsq.2_Intron|MED15_uc010gso.2_Intron|MED15_uc002zsr.2_Intron|MED15_uc011ahs.1_Intron|MED15_uc002zss.2_Intron|MED15_uc011ahu.1_Silent_p.S134S|MED15_uc002zst.2_Silent_p.S24S	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	408	Pro-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			CCGCTGTGTCCGCCATCCCGT	0.627												
PI4KA	5297	broad.mit.edu	37	22	21062346	21062346	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:21062346T>C	uc002zsz.3	-	55	6355	c.6124A>G	c.(6124-6126)ATC>GTC	p.I2042V	PI4KA_uc010gsp.2_Missense_Mutation_p.I433V|PI4KA_uc002zsy.3_Missense_Mutation_p.I852V	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	2042					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			CAGTAGGGGATGTCATTCTGA	0.607												
LZTR1	8216	broad.mit.edu	37	22	21350351	21350351	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:21350351G>A	uc002zto.2	+	18	2272	c.2169G>A	c.(2167-2169)ATG>ATA	p.M723I	LZTR1_uc002ztn.2_Missense_Mutation_p.M682I|LZTR1_uc011ahy.1_Missense_Mutation_p.M704I|LZTR1_uc002ztp.2_Missense_Mutation_p.M29I	NM_006767	NP_006758	Q8N653	LZTR1_HUMAN	leucine-zipper-like transcription regulator 1	723	BTB 2.				anatomical structure morphogenesis		sequence-specific DNA binding transcription factor activity			ovary(2)|lung(2)	4	all_cancers(11;1.83e-25)|all_epithelial(7;9.19e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			TCGAGTCCATGCTGCGCTACA	0.612												
HIC2	23119	broad.mit.edu	37	22	21799230	21799230	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:21799230C>T	uc002zur.3	+	3	276	c.46C>T	c.(46-48)CGC>TGC	p.R16C	HIC2_uc002zus.3_Missense_Mutation_p.R16C	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	16					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				GTGGGCAGGGCGCGGGGACAT	0.662												
HIC2	23119	broad.mit.edu	37	22	21799327	21799327	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:21799327T>C	uc002zur.3	+	3	373	c.143T>C	c.(142-144)GTC>GCC	p.V48A	HIC2_uc002zus.3_Missense_Mutation_p.V48A	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	48	BTB.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				CTGTGTGACGTCATCATCATG	0.607												
HIC2	23119	broad.mit.edu	37	22	21800502	21800502	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:21800502A>G	uc002zur.3	+	3	1548	c.1318A>G	c.(1318-1320)AAC>GAC	p.N440D	HIC2_uc002zus.3_Missense_Mutation_p.N440D	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	440					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				CTACGGGGACAACTTGTATGT	0.617												
UBE2L3	7332	broad.mit.edu	37	22	21947247	21947247	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:21947247T>C	uc002zva.1	+	2	200	c.123_splice	c.e2+2	p.P41_splice	UBE2L3_uc011aig.1_Intron|UBE2L3_uc002zuz.1_Splice_Site_p.P41_splice|UBE2L3_uc010gti.1_Splice_Site	NM_003347	NP_003338	P68036	UB2L3_HUMAN	ubiquitin-conjugating enzyme E2L 3						cell proliferation|cellular response to glucocorticoid stimulus|protein K11-linked ubiquitination|regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	ATP binding|transcription coactivator activity|ubiquitin protein ligase binding|ubiquitin-protein ligase activity				0	Colorectal(54;0.105)					ATTGTTCCTGTGAGTATTGAA	0.423												
CCDC116	164592	broad.mit.edu	37	22	21989105	21989105	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:21989105C>T	uc002zve.2	+	4	846	c.753C>T	c.(751-753)GGC>GGT	p.G251G	CCDC116_uc011aih.1_Silent_p.G251G	NM_152612	NP_689825	Q8IYX3	CC116_HUMAN	coiled-coil domain containing 116	251										ovary(1)|skin(1)	2	Colorectal(54;0.105)					CAAGCTCTGGCGTGCCTGAAG	0.572												
GNAZ	2781	broad.mit.edu	37	22	23438406	23438406	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:23438406T>C	uc002zwu.1	+	2	1061	c.524T>C	c.(523-525)ATC>ACC	p.I175T	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	175						endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		GTCGAGGACATCCTGCGCTCC	0.607												
BCR	613	broad.mit.edu	37	22	23603710	23603710	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:23603710G>A	uc002zww.2	+	4	2331	c.1735G>A	c.(1735-1737)GAC>AAC	p.D579N	BCR_uc002zwx.2_Missense_Mutation_p.D579N|BCR_uc011aiy.1_Missense_Mutation_p.D168N|BCR_uc010gtx.1_Missense_Mutation_p.D82N|uc010gty.2_5'Flank	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	579	DH.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						GCGGGTGGGCGACCTCTTCCA	0.408			T	ABL1| FGFR1|JAK2 	CML|ALL|AML							
CABIN1	23523	broad.mit.edu	37	22	24439497	24439497	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:24439497C>A	uc002zzi.1	+	6	604	c.477C>A	c.(475-477)CCC>CCA	p.P159P	CABIN1_uc002zzj.1_Silent_p.P159P|CABIN1_uc002zzl.1_Silent_p.P159P|CABIN1_uc010guk.1_Silent_p.P114P|CABIN1_uc002zzk.1_Silent_p.P114P	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	159					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						ACCACTGGCCCTGTTTGGATA	0.512												
SUSD2	56241	broad.mit.edu	37	22	24583571	24583571	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:24583571T>C	uc002zzn.1	+	12	1968	c.1924T>C	c.(1924-1926)TAC>CAC	p.Y642H		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	642	VWFD.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCTGCTCACCTACGATTCCTG	0.627												
SGSM1	129049	broad.mit.edu	37	22	25243746	25243746	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:25243746G>A	uc003abg.2	+	4	442	c.285G>A	c.(283-285)GAG>GAA	p.E95E	SGSM1_uc003abh.2_Silent_p.E95E|SGSM1_uc010guu.1_Silent_p.E95E|SGSM1_uc003abj.2_Silent_p.E95E|SGSM1_uc003abi.1_Silent_p.E70E|SGSM1_uc003abf.2_Silent_p.E95E	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	95	RUN.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						AAGACCTGGAGCAGCTGATCG	0.587												
SEZ6L	23544	broad.mit.edu	37	22	26688424	26688424	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:26688424A>G	uc003acb.2	+	2	303	c.147A>G	c.(145-147)TCA>TCG	p.S49S	SEZ6L_uc003acc.2_Silent_p.S49S|SEZ6L_uc011akc.1_Silent_p.S49S|SEZ6L_uc003acd.2_Silent_p.S49S|SEZ6L_uc011akd.1_Silent_p.S49S|SEZ6L_uc003ace.2_Silent_p.S49S|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	49	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TCCTGCCCTCAGGAGCCCCGG	0.587												
ASPHD2	57168	broad.mit.edu	37	22	26830248	26830248	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:26830248A>G	uc003acg.2	+	2	1064	c.667A>G	c.(667-669)ACC>GCC	p.T223A		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	223	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						AATGAACAGCACCCCCAGCGG	0.537												
SRRD	402055	broad.mit.edu	37	22	26886097	26886097	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:26886097A>G	uc010gve.2	+	5	704	c.697A>G	c.(697-699)AAC>GAC	p.N233D	SRRD_uc003acp.3_Missense_Mutation_p.N226D|uc003acu.1_5'Flank	NM_001013694	NP_001013716	Q9UH36	SRR1L_HUMAN	SRR1 domain containing	233					rhythmic process						0						TTTATGGAGTAACTGGTCAGT	0.473												
TFIP11	24144	broad.mit.edu	37	22	26899657	26899657	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:26899657A>G	uc003acr.2	-	6	997	c.623T>C	c.(622-624)GTT>GCT	p.V208A	TFIP11_uc003acs.2_Missense_Mutation_p.V208A|TFIP11_uc003act.2_Missense_Mutation_p.V208A	NM_012143	NP_036275	Q9UBB9	TFP11_HUMAN	tuftelin interacting protein 11	208					biomineral tissue development	catalytic step 2 spliceosome|cytoplasm|nuclear speck	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTCTGAGTCAACCACAGGGAA	0.478												
TPST2	8459	broad.mit.edu	37	22	26936888	26936888	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:26936888A>G	uc003acv.2	-	2	877	c.709T>C	c.(709-711)TAC>CAC	p.Y237H	TPST2_uc003acw.2_Missense_Mutation_p.Y237H|TPST2_uc003acx.2_Missense_Mutation_p.Y237H|TPST2_uc011akf.1_Missense_Mutation_p.Y237H	NM_003595	NP_003586	O60704	TPST2_HUMAN	tyrosylprotein sulfotransferase 2	237	Lumenal (Potential).				peptidyl-tyrosine sulfation	endoplasmic reticulum|Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity			central_nervous_system(1)	1						TGCTCGTAGTACACAGGCAGG	0.602												
CRYBA4	1413	broad.mit.edu	37	22	27024321	27024321	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:27024321G>A	uc003acz.3	+	5	405	c.370G>A	c.(370-372)GAT>AAT	p.D124N		NM_001886	NP_001877	P53673	CRBA4_HUMAN	crystallin, beta A4	124	Beta/gamma crystallin 'Greek key' 3.				camera-type eye development|visual perception	soluble fraction	structural constituent of eye lens				0						AGAGCTGAGCGATGACTATCC	0.547												
ZNRF3	84133	broad.mit.edu	37	22	29444383	29444383	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:29444383C>T	uc003aeg.2	+	7	784	c.619C>T	c.(619-621)CGG>TGG	p.R207W	ZNRF3_uc003aeh.1_Missense_Mutation_p.R207W	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	307	RING-type; atypical.|Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						CCAGGAGCTGCGGGTCATCCC	0.602												
KREMEN1	83999	broad.mit.edu	37	22	29533411	29533411	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:29533411C>T	uc011akm.1	+	6	726	c.713C>T	c.(712-714)ACG>ATG	p.T238M	KREMEN1_uc003ael.2_Missense_Mutation_p.T238M|KREMEN1_uc011akn.1_Missense_Mutation_p.T121M	NM_032045	NP_114434	Q96MU8	KREM1_HUMAN	kringle-containing transmembrane protein 1	236	Extracellular (Potential).|CUB.				cell communication|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane|membrane fraction	protein binding			ovary(3)|lung(2)	5						ACCTATGCCACGGGGAGGGTC	0.597												
EWSR1	2130	broad.mit.edu	37	22	29696151	29696151	+	Nonstop_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:29696151G>T	uc003aet.2	+	17	2299	c.1971G>T	c.(1969-1971)TAG>TAT	p.*657Y	EWSR1_uc003aev.2_Nonstop_Mutation_p.*662Y|EWSR1_uc003aew.2_Nonstop_Mutation_p.*601Y|EWSR1_uc003aex.2_Nonstop_Mutation_p.*656Y|EWSR1_uc003aey.2_Nonstop_Mutation_p.*452Y|EWSR1_uc003aez.2_Nonstop_Mutation_p.*318Y	NM_005243	NP_005234	Q01844	EWS_HUMAN	Ewing sarcoma breakpoint region 1 isoform 2	657					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	calmodulin binding|nucleotide binding|RNA binding|zinc ion binding		EWSR1/FLI1(2266)|EWSR1/ATF1(323)|EWSR1/WT1(231)|EWSR1/ERG(162)|EWSR1/NR4A3(140)|EWSR1/DDIT3(43)|EWSR1/CREB1(42)|EWSR1/FEV(10)|EWSR1/POU5F1(10)|EWSR1/ETV1(7)|EWSR1/ETV4(6)|EWSR1/ZNF384(4)|EWSR1/PBX1(3)|EWSR1/SP3(3)|EWSR1/PATZ1(2)	bone(2526)|soft_tissue(702)|skin(8)|autonomic_ganglia(4)|haematopoietic_and_lymphoid_tissue(4)|salivary_gland(2)|central_nervous_system(2)|NS(2)|pancreas(2)|lung(1)|ovary(1)	3254						GGCCCTACTAGATGCAGAGAC	0.468			T	FLI1|ERG|ZNF278|NR4A3|FEV|ATF1|ETV1|ETV4|WT1|ZNF384|CREB1|POU5F1| PBX1	Ewing sarcoma| desmoplastic small round cell tumor |ALL|clear cell sarcoma|sarcoma|myoepithelioma							
GAS2L1	10634	broad.mit.edu	37	22	29708221	29708221	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:29708221G>A	uc003afa.1	+	7	1980	c.1781G>A	c.(1780-1782)CGA>CAA	p.R594Q	GAS2L1_uc010gvm.1_Missense_Mutation_p.R367Q|GAS2L1_uc003afb.1_3'UTR|GAS2L1_uc003afc.1_Missense_Mutation_p.R594Q|GAS2L1_uc003afd.1_3'UTR|GAS2L1_uc003afe.1_3'UTR	NM_152236	NP_689422	Q99501	GA2L1_HUMAN	growth arrest-specific 2 like 1 isoform a	594					cell cycle arrest	cytoplasm|cytoskeleton					0						CCTGGGCCCCGAAGCCAAGCC	0.662												
AP1B1	162	broad.mit.edu	37	22	29754783	29754783	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:29754783C>T	uc003afj.2	-	5	641	c.457G>A	c.(457-459)GCC>ACC	p.A153T	AP1B1_uc003afi.2_Missense_Mutation_p.A153T|AP1B1_uc003afk.2_Missense_Mutation_p.A153T|AP1B1_uc003afl.2_Missense_Mutation_p.A153T	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	153					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						ACCAGCTGGGCGTTGATGTCG	0.592												
RFPL1	5988	broad.mit.edu	37	22	29837596	29837596	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:29837596G>A	uc003afn.2	+	2	648	c.439G>A	c.(439-441)GTC>ATC	p.V147I	RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1	147	B30.2/SPRY.						zinc ion binding				0						CCTCAGGAGCGTCCGAAGTGG	0.512												
PLA2G3	50487	broad.mit.edu	37	22	31536087	31536087	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:31536087G>A	uc003aka.2	-	1	383	c.254C>T	c.(253-255)GCT>GTT	p.A85V		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	85					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						AGCACAGAGAGCACCGTAGGC	0.637												
LIMK2	3985	broad.mit.edu	37	22	31669457	31669457	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:31669457G>A	uc003akh.2	+	14	1723	c.1578G>A	c.(1576-1578)ACG>ACA	p.T526T	LIMK2_uc003akg.2_Silent_p.T443T|LIMK2_uc003aki.2_Silent_p.T280T|LIMK2_uc003akj.2_Silent_p.T505T|LIMK2_uc003akk.2_Silent_p.T505T|LIMK2_uc011aln.1_Silent_p.T443T	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	526	Protein kinase.					mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						ATGATGAGACGGTGGATATCT	0.542											OREG0026477	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
SFI1	9814	broad.mit.edu	37	22	32010791	32010791	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:32010791G>C	uc003ale.2	+	28	3406	c.3013G>C	c.(3013-3015)GCG>CCG	p.A1005P	SFI1_uc003alf.2_Missense_Mutation_p.A974P|SFI1_uc003alg.2_Missense_Mutation_p.A923P|SFI1_uc011alp.1_Missense_Mutation_p.A911P|SFI1_uc011alq.1_Missense_Mutation_p.A950P|SFI1_uc003alh.2_RNA|SFI1_uc010gwi.2_RNA|SFI1_uc003ali.2_Missense_Mutation_p.A97P|SFI1_uc003alj.2_Missense_Mutation_p.Q76H	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	1005					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						TGCCCACTCAGCGAGGAAGCA	0.627												
DEPDC5	9681	broad.mit.edu	37	22	32229940	32229940	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:32229940A>G	uc003als.2	+	25	2286	c.2144A>G	c.(2143-2145)GAC>GGC	p.D715G	DEPDC5_uc011als.1_Missense_Mutation_p.D637G|DEPDC5_uc011alu.1_Missense_Mutation_p.D715G|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.D715G|DEPDC5_uc003alu.2_Missense_Mutation_p.D155G|DEPDC5_uc003alv.2_RNA|DEPDC5_uc011alw.1_Missense_Mutation_p.D36G|DEPDC5_uc003alw.2_Missense_Mutation_p.D13G|DEPDC5_uc011alx.1_5'UTR|DEPDC5_uc011alt.1_Missense_Mutation_p.D609G	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	715					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						TCTCTAGAGGACAGTGTTTCT	0.483												
RFPL2	10739	broad.mit.edu	37	22	32586769	32586769	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:32586769T>C	uc003amg.3	-	5	2063	c.1127A>G	c.(1126-1128)GAG>GGG	p.E376G	RFPL2_uc003ame.3_Missense_Mutation_p.E315G|RFPL2_uc003amf.3_Missense_Mutation_p.E286G|RFPL2_uc003amh.3_Missense_Mutation_p.E286G	NM_001098527	NP_001091997	O75678	RFPL2_HUMAN	ret finger protein-like 2 isoform 2	376							zinc ion binding			skin(1)	1						TTATTTGGCCTCCCCAGGACG	0.443												
SLC5A4	6527	broad.mit.edu	37	22	32644771	32644771	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:32644771T>C	uc003ami.2	-	4	333	c.331A>G	c.(331-333)ATT>GTT	p.I111V		NM_014227	NP_055042	Q9NY91	SC5A4_HUMAN	solute carrier family 5 (low affinity glucose	111	Helical; (Potential).				carbohydrate transport|sodium ion transport	integral to membrane	symporter activity				0						CACCCAAGAATCAGCAACATT	0.338												
SLC5A4	6527	broad.mit.edu	37	22	32650198	32650198	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:32650198C>T	uc003ami.2	-	2	140	c.138G>A	c.(136-138)GCG>GCA	p.A46A		NM_014227	NP_055042	Q9NY91	SC5A4_HUMAN	solute carrier family 5 (low affinity glucose	46	Helical; (Potential).				carbohydrate transport|sodium ion transport	integral to membrane	symporter activity				0						TCTTCAGCATCGCCTGAGCAG	0.567												
HMGXB4	10042	broad.mit.edu	37	22	35661177	35661177	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:35661177G>T	uc003anl.2	+	5	970	c.796G>T	c.(796-798)GGC>TGC	p.G266C	HMGXB4_uc011amh.1_Missense_Mutation_p.G157C|HMGXB4_uc003ank.2_Missense_Mutation_p.G157C	NM_001003681	NP_001003681	Q9UGU5	HMGX4_HUMAN	high-mobility group protein 2-like 1	266					endosome to lysosome transport|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	NURF complex	DNA binding			breast(1)|skin(1)	2						TGGCCCTGAAGGCTGTGGGTC	0.512												
APOL1	8542	broad.mit.edu	37	22	36661621	36661621	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:36661621A>G	uc003apf.2	+	6	907	c.739A>G	c.(739-741)AGC>GGC	p.S247G	APOL1_uc011amn.1_Missense_Mutation_p.S124G|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Missense_Mutation_p.S263G|APOL1_uc011amo.1_Missense_Mutation_p.S124G|APOL1_uc011amp.1_Missense_Mutation_p.S247G|APOL1_uc011amq.1_Missense_Mutation_p.S229G|APOL1_uc010gwx.2_Missense_Mutation_p.S124G	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	247					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						GGTCATCAAAAGCCTTGACAA	0.493												
CACNG2	10369	broad.mit.edu	37	22	36960849	36960849	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:36960849T>C	uc003aps.1	-	4	803	c.521A>G	c.(520-522)TAC>TGC	p.Y174C		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	174					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						GCCGTATGAGTAACTATTCTT	0.547												
KCTD17	79734	broad.mit.edu	37	22	37457578	37457578	+	Splice_Site	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:37457578G>T	uc010gxb.2	+	8	807	c.785_splice	c.e8-1	p.G262_splice	KCTD17_uc011amv.1_Splice_Site_p.G245_splice|KCTD17_uc010gxc.2_Splice_Site_p.V205_splice	NM_024681	NP_078957	Q8N5Z5	KCD17_HUMAN	potassium channel tetramerisation domain							voltage-gated potassium channel complex	identical protein binding|voltage-gated potassium channel activity				0						CCTCCTTGCAGGTTCCCGTCC	0.687												
RAC2	5880	broad.mit.edu	37	22	37637690	37637690	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:37637690C>T	uc003arc.2	-	2	161	c.44G>A	c.(43-45)GGC>GAC	p.G15D		NM_002872	NP_002863	P15153	RAC2_HUMAN	ras-related C3 botulinum toxin substrate 2	15	GTP (By similarity).				axon guidance|platelet activation|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity|protein binding			breast(2)|central_nervous_system(1)|skin(1)	4						GCAGGTCTTGCCCACGGCCCT	0.612												
TRIOBP	11078	broad.mit.edu	37	22	38151115	38151115	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:38151115A>T	uc003atr.2	+	14	5766	c.5495A>T	c.(5494-5496)GAG>GTG	p.E1832V	TRIOBP_uc003atu.2_Missense_Mutation_p.E1660V|TRIOBP_uc003atv.2_Missense_Mutation_p.E119V|TRIOBP_uc003atw.2_Missense_Mutation_p.E119V|TRIOBP_uc003atx.1_5'Flank|TRIOBP_uc010gxh.2_5'Flank	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1832	PH.				actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CAGGCAGATGAGCTGGATGGT	0.632												
CSNK1E	1454	broad.mit.edu	37	22	38694806	38694806	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:38694806C>A	uc003avj.2	-	7	1131	c.870G>T	c.(868-870)TGG>TGT	p.W290C	CSNK1E_uc003avk.2_Missense_Mutation_p.W290C|CSNK1E_uc003avl.1_RNA|CSNK1E_uc003avm.1_Missense_Mutation_p.W290C|CSNK1E_uc003avo.2_Missense_Mutation_p.W290C|CSNK1E_uc003avp.1_Missense_Mutation_p.W290C|CSNK1E_uc003avq.1_Missense_Mutation_p.W290C	NM_152221	NP_689407	P49674	KC1E_HUMAN	casein kinase 1 epsilon	290					DNA repair|G2/M transition of mitotic cell cycle|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|signal transduction	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Melanoma(58;0.045)					TCAGCATGTTCCAGTCAAAGA	0.597											OREG0026559	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
CSNK1E	1454	broad.mit.edu	37	22	38694907	38694907	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:38694907A>G	uc003avj.2	-	7	1030	c.769T>C	c.(769-771)TCC>CCC	p.S257P	CSNK1E_uc003avk.2_Missense_Mutation_p.S257P|CSNK1E_uc003avl.1_RNA|CSNK1E_uc003avm.1_Missense_Mutation_p.S257P|CSNK1E_uc003avo.2_Missense_Mutation_p.S257P|CSNK1E_uc003avp.1_Missense_Mutation_p.S257P|CSNK1E_uc003avq.1_Missense_Mutation_p.S257P	NM_152221	NP_689407	P49674	KC1E_HUMAN	casein kinase 1 epsilon	257	Protein kinase.				DNA repair|G2/M transition of mitotic cell cycle|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|signal transduction	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Melanoma(58;0.045)					AACCGCAGGGAGCGGCAGAAG	0.577											OREG0026559	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
KCNJ4	3761	broad.mit.edu	37	22	38823509	38823509	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:38823509C>T	uc003avs.1	-	2	726	c.629G>A	c.(628-630)CGC>CAC	p.R210H	KCNJ4_uc003avt.1_Missense_Mutation_p.R210H	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	210	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					GTGGCTCTTGCGCAGGTTGCC	0.662												
DDX17	10521	broad.mit.edu	37	22	38897252	38897252	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:38897252C>T	uc003avy.3	-	2	424	c.321G>A	c.(319-321)CCG>CCA	p.P107P	DDX17_uc003avx.3_Silent_p.P107P|DDX17_uc011anu.1_Silent_p.P20P	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	28					RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					CAAATTTCTTCGGGGGAAGGC	0.408												
DMC1	11144	broad.mit.edu	37	22	38962699	38962699	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:38962699T>C	uc003avz.1	-	4	314	c.139A>G	c.(139-141)ACC>GCC	p.T47A	DMC1_uc011anv.1_Missense_Mutation_p.T47A|DMC1_uc003awa.1_Missense_Mutation_p.T47A	NM_007068	NP_008999	Q14565	DMC1_HUMAN	DMC1 dosage suppressor of mck1 homolog	47					reciprocal meiotic recombination	condensed nuclear chromosome	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding			ovary(1)	1	Melanoma(58;0.0286)					CCTTTGATGGTACAGATTCCT	0.423								Homologous_recombination				
APOBEC3D	140564	broad.mit.edu	37	22	39421596	39421596	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:39421596T>C	uc011aoe.1	+	4	579	c.525T>C	c.(523-525)AAT>AAC	p.N175N	APOBEC3D_uc011aod.1_Silent_p.N244N|APOBEC3D_uc011aof.1_Intron|APOBEC3D_uc003awu.3_Intron|APOBEC3D_uc003awt.3_Silent_p.N175N|APOBEC3D_uc010gxu.2_Intron	NM_152426	NP_689639	Q96AK3	ABC3D_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	175					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|zinc ion binding				0	Melanoma(58;0.04)					TTGTGTGCAATGAAGGTCAGC	0.547												
MGAT3	4248	broad.mit.edu	37	22	39884031	39884031	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:39884031G>A	uc003axv.3	+	2	918	c.679G>A	c.(679-681)GAG>AAG	p.E227K	MGAT3_uc010gxy.2_Missense_Mutation_p.E227K	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	227	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					GCGCTTCCACGAGCTGGGCGA	0.652												
RPS19BP1	91582	broad.mit.edu	37	22	39925608	39925608	+	Silent	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:39925608G>C	uc003ayb.2	-	4	427	c.300C>G	c.(298-300)GGC>GGG	p.G100G		NM_194326	NP_919307	Q86WX3	AROS_HUMAN	S19 binding protein	100						nucleolus|nucleoplasm					0	Melanoma(58;0.04)					AGGCCTTGCGGCCCCGGTTCT	0.612											OREG0026578	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
CACNA1I	8911	broad.mit.edu	37	22	40043875	40043875	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:40043875G>A	uc003ayc.2	+	9	1511	c.1511G>A	c.(1510-1512)CGG>CAG	p.R504Q	CACNA1I_uc003ayd.2_Intron|CACNA1I_uc003aye.2_Missense_Mutation_p.R419Q|CACNA1I_uc003ayf.2_Intron	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	504	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CTCGGAAGCCGGCATTGCCAG	0.373												
CACNA1I	8911	broad.mit.edu	37	22	40064365	40064365	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:40064365T>C	uc003ayc.2	+	24	4173	c.4173T>C	c.(4171-4173)GAT>GAC	p.D1391D	CACNA1I_uc003ayd.2_Silent_p.D1356D|CACNA1I_uc003aye.2_Silent_p.D1306D|CACNA1I_uc003ayf.2_Silent_p.D1271D	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1391	Extracellular (Potential).|III.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ATGGACTGGATGCTGTTGCTG	0.562												
ADSL	158	broad.mit.edu	37	22	40754911	40754911	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:40754911A>G	uc003ayp.3	+	5	585	c.526A>G	c.(526-528)ATT>GTT	p.I176V	ADSL_uc003ays.3_Missense_Mutation_p.I176V|ADSL_uc003ayq.3_Missense_Mutation_p.I176V|ADSL_uc003ayr.3_5'UTR|ADSL_uc003ayt.3_Missense_Mutation_p.I161V|ADSL_uc010gyb.1_RNA	NM_000026	NP_000017	P30566	PUR8_HUMAN	adenylosuccinate lyase isoform a	176					AMP biosynthetic process|protein tetramerization|purine base metabolic process	cytosol	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity|N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity			ovary(1)	1						CTGTCTTTGGATTCAGGATCT	0.512												
MKL1	57591	broad.mit.edu	37	22	40814987	40814987	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:40814987C>T	uc003ayv.1	-	9	1662	c.1455G>A	c.(1453-1455)ACG>ACA	p.T485T	MKL1_uc003ayw.1_Silent_p.T485T|MKL1_uc010gye.1_Silent_p.T485T|MKL1_uc010gyf.1_Silent_p.T435T	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	485					positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GGGTCAGCTGCGTCAGAGGTG	0.682			T	RBM15	acute megakaryocytic leukemia							
EP300	2033	broad.mit.edu	37	22	41573174	41573174	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:41573174A>G	uc003azl.3	+	31	5854	c.5459A>G	c.(5458-5460)CAC>CGC	p.H1820R		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1820					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						CAGCTGCAGCACCGACTACAG	0.617			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome			
EP300	2033	broad.mit.edu	37	22	41574435	41574435	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:41574435A>G	uc003azl.3	+	31	7115	c.6720A>G	c.(6718-6720)GGA>GGG	p.G2240G		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	2240	Interaction with NCOA2.				apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						GAAATATGGGACAGATAGGCC	0.567			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome			
L3MBTL2	83746	broad.mit.edu	37	22	41625571	41625571	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:41625571G>A	uc003azo.2	+	16	1970	c.1916G>A	c.(1915-1917)CGA>CAA	p.R639Q	L3MBTL2_uc003azn.2_RNA|CHADL_uc003azq.3_3'UTR|CHADL_uc010gyj.2_3'UTR	NM_031488	NP_113676	Q969R5	LMBL2_HUMAN	l(3)mbt-like 2	639					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	methylated histone residue binding|transcription corepressor activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3						ACTAAGACGCGACCCCTCAGA	0.532												
TOB2	10766	broad.mit.edu	37	22	41832509	41832509	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:41832509C>T	uc003azz.1	-	2	1548	c.841G>A	c.(841-843)GGC>AGC	p.G281S		NM_016272	NP_057356	Q14106	TOB2_HUMAN	transducer of ERBB2, 2	281				QGSGTPGPFGGSGAGTCNSSSFDMAQVFGGGANSLFLEKT -> RAAAPQARLEAVGLAPATAAALTWPRYLEVVPTASSWR RH (in Ref. 1; BAA10971).	female gamete generation|negative regulation of cell proliferation	cytoplasm|nucleus				ovary(1)	1						CCTGGGGTGCCGCTGccctgg	0.363												
PPPDE2	27351	broad.mit.edu	37	22	42016765	42016765	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:42016765T>C	uc003ban.1	-	1	152	c.79A>G	c.(79-81)ATC>GTC	p.I27V	PPPDE2_uc011apb.1_RNA|XRCC6_uc003bao.1_5'Flank|XRCC6_uc003bap.1_5'Flank|XRCC6_uc011apc.1_5'Flank|XRCC6_uc003baq.1_5'Flank|XRCC6_uc003bar.1_5'Flank|XRCC6_uc003bas.1_5'Flank	NM_015704	NP_056519	Q6ICB0	PPDE2_HUMAN	PPPDE peptidase domain containing 2	27	PPPDE peptidase.										0						CCCAGCATGATGGGGCTGAGC	0.697												
SREBF2	6721	broad.mit.edu	37	22	42262964	42262964	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:42262964G>A	uc003bbi.2	+	2	387	c.218G>A	c.(217-219)AGC>AAC	p.S73N	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	73	Gly/Pro/Ser-rich.|Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						agcagcagcagcagcaatggc	0.393												
ARFGAP3	26286	broad.mit.edu	37	22	43218294	43218294	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:43218294A>G	uc003bdd.2	-	9	1014	c.794T>C	c.(793-795)GTA>GCA	p.V265A	ARFGAP3_uc010gzf.2_Missense_Mutation_p.V221A|ARFGAP3_uc011apu.1_Missense_Mutation_p.V193A	NM_014570	NP_055385	Q9NP61	ARFG3_HUMAN	ADP-ribosylation factor GTPase activating	265					intracellular protein transport|protein secretion|regulation of ARF GTPase activity|vesicle-mediated transport	cytosol|Golgi membrane	ARF GTPase activator activity|protein transporter activity|zinc ion binding			breast(1)	1						TTCTTTAGATACCACCTTGGC	0.343												
MCAT	27349	broad.mit.edu	37	22	43529260	43529260	+	Missense_Mutation	SNP	A	A	G	rs113924126		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:43529260A>G	uc003bdl.1	-	4	1011	c.962T>C	c.(961-963)GTC>GCC	p.V321A	MCAT_uc003bdm.1_3'UTR	NM_173467	NP_775738	Q8IVS2	FABD_HUMAN	mitochondrial malonyltransferase isoform a	321					fatty acid biosynthetic process	mitochondrion	[acyl-carrier-protein] S-malonyltransferase activity|binding			ovary(1)	1		Ovarian(80;0.0694)				CACTGGGGAGACCAGCTGCTG	0.567												
SCUBE1	80274	broad.mit.edu	37	22	43604189	43604189	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:43604189A>C	uc003bdt.1	-	20	2711	c.2623T>G	c.(2623-2625)TAC>GAC	p.Y875D		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	875	CUB.				adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				GGCCTCTCGTAGGTCTGGCAG	0.537												
EFCAB6	64800	broad.mit.edu	37	22	44112809	44112809	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:44112809T>C	uc003bdy.1	-	9	1016	c.801A>G	c.(799-801)GAA>GAG	p.E267E	EFCAB6_uc003bdz.1_Silent_p.E115E|EFCAB6_uc010gzi.1_Silent_p.E115E|EFCAB6_uc010gzk.1_RNA|EFCAB6_uc011aqa.1_Silent_p.E161E|EFCAB6_uc003bea.1_Silent_p.E264E|EFCAB6_uc003beb.3_Silent_p.E161E	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	267					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CTAGCAAACGTTCCTTTTTGG	0.363												
PARVG	64098	broad.mit.edu	37	22	44585064	44585064	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:44585064C>T	uc011aqe.1	+	6	742	c.318C>T	c.(316-318)CTC>CTT	p.L106L	PARVG_uc003bep.2_Silent_p.L106L|PARVG_uc011aqf.1_Silent_p.L106L|PARVG_uc003beq.2_RNA|PARVG_uc003ber.2_RNA	NM_001137605	NP_001131077	Q9HBI0	PARVG_HUMAN	parvin, gamma	106	CH 1.				cell-matrix adhesion	cytoplasm|cytoskeleton|focal adhesion	actin binding				0		Ovarian(80;0.024)|all_neural(38;0.0299)				AGCACAAGCTCACAGTGGTGC	0.647												
PARVG	64098	broad.mit.edu	37	22	44592258	44592258	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:44592258A>G	uc011aqe.1	+	11	1098	c.674A>G	c.(673-675)GAC>GGC	p.D225G	PARVG_uc003bep.2_Missense_Mutation_p.D225G|PARVG_uc011aqf.1_Missense_Mutation_p.D225G|PARVG_uc003beq.2_RNA|PARVG_uc003ber.2_RNA	NM_001137605	NP_001131077	Q9HBI0	PARVG_HUMAN	parvin, gamma	225	CH 2.				cell-matrix adhesion	cytoplasm|cytoskeleton|focal adhesion	actin binding				0		Ovarian(80;0.024)|all_neural(38;0.0299)				CAGAAGCTGGACCGCCTGGGC	0.607												
KIAA1644	85352	broad.mit.edu	37	22	44681392	44681392	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:44681392A>G	uc003bet.2	-	4	648	c.515T>C	c.(514-516)CTG>CCG	p.L172P		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	172	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				GGCTTGTGGCAGCGGGCCTGG	0.687												
PHF21B	112885	broad.mit.edu	37	22	45279040	45279040	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:45279040G>A	uc003bfn.2	-	13	1673	c.1522C>T	c.(1522-1524)CTG>TTG	p.L508L	PHF21B_uc003bfm.2_Silent_p.L304L|PHF21B_uc011aqk.1_Silent_p.L454L|PHF21B_uc011aql.1_Silent_p.L466L	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	508							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		GGCCCGGCCAGCAGTGGGGCA	0.672												
FAM118A	55007	broad.mit.edu	37	22	45719147	45719147	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:45719147C>A	uc003bfz.3	+	4	755	c.139C>A	c.(139-141)CCT>ACT	p.P47T	FAM118A_uc003bga.3_Missense_Mutation_p.P47T	NM_001104595	NP_001098065	Q9NWS6	F118A_HUMAN	hypothetical protein LOC55007	47	Helical; (Potential).					integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		CCCCGGAATCCCTGCCCTTTG	0.597												
FAM118A	55007	broad.mit.edu	37	22	45719217	45719217	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:45719217A>G	uc003bfz.3	+	4	825	c.209A>G	c.(208-210)CAC>CGC	p.H70R	FAM118A_uc003bga.3_Missense_Mutation_p.H70R	NM_001104595	NP_001098065	Q9NWS6	F118A_HUMAN	hypothetical protein LOC55007	70						integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		GAGGTGCTGCACCCCGGAGAC	0.622												
WNT7B	7477	broad.mit.edu	37	22	46318891	46318891	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:46318891G>A	uc003bgo.2	-	4	1269	c.895C>T	c.(895-897)CCC>TCC	p.P299S	WNT7B_uc010haa.2_Missense_Mutation_p.P303S	NM_058238	NP_478679	P56706	WNT7B_HUMAN	wingless-type MMTV integration site family,	299					activation of JUN kinase activity|anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|central nervous system vasculogenesis|chorio-allantoic fusion|developmental growth involved in morphogenesis|embryonic placenta morphogenesis|establishment or maintenance of polarity of embryonic epithelium|fibroblast proliferation|forebrain regionalization|inner medullary collecting duct development|lens fiber cell development|lobar bronchus development|lung epithelium development|lung morphogenesis|lung-associated mesenchyme development|mammary gland epithelium development|metanephric collecting duct development|metanephric loop of Henle development|metanephros morphogenesis|negative regulation of smoothened signaling pathway|outer medullary collecting duct development|oxygen homeostasis|positive regulation of JNK cascade|positive regulation of osteoblast differentiation|renal inner medulla development|renal outer medulla development|stem cell proliferation|synapse organization|trachea cartilage morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled binding|signal transducer activity			lung(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|LUAD - Lung adenocarcinoma(64;0.247)		TCCGCGCCGGGCGACGTGCGG	0.642												
WNT7B	7477	broad.mit.edu	37	22	46318963	46318963	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:46318963G>T	uc003bgo.2	-	4	1197	c.823C>A	c.(823-825)CCC>ACC	p.P275T	WNT7B_uc010haa.2_Missense_Mutation_p.P279T	NM_058238	NP_478679	P56706	WNT7B_HUMAN	wingless-type MMTV integration site family,	275					activation of JUN kinase activity|anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|central nervous system vasculogenesis|chorio-allantoic fusion|developmental growth involved in morphogenesis|embryonic placenta morphogenesis|establishment or maintenance of polarity of embryonic epithelium|fibroblast proliferation|forebrain regionalization|inner medullary collecting duct development|lens fiber cell development|lobar bronchus development|lung epithelium development|lung morphogenesis|lung-associated mesenchyme development|mammary gland epithelium development|metanephric collecting duct development|metanephric loop of Henle development|metanephros morphogenesis|negative regulation of smoothened signaling pathway|outer medullary collecting duct development|oxygen homeostasis|positive regulation of JNK cascade|positive regulation of osteoblast differentiation|renal inner medulla development|renal outer medulla development|stem cell proliferation|synapse organization|trachea cartilage morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled binding|signal transducer activity			lung(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|LUAD - Lung adenocarcinoma(64;0.247)		CAGTAGTTGGGCGACTTCTCA	0.667												
PPARA	5465	broad.mit.edu	37	22	46614282	46614282	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:46614282C>T	uc003bgw.1	+	6	758	c.492C>T	c.(490-492)GTC>GTT	p.V164V	PPARA_uc003bgx.1_Silent_p.V164V|PPARA_uc010hab.1_Silent_p.V164V|PPARA_uc003bha.2_Silent_p.V164V|PPARA_uc003bhb.1_Silent_p.V164V|PPARA_uc010hac.1_Missense_Mutation_p.S29L	NM_005036	NP_005027	Q07869	PPARA_HUMAN	peroxisome proliferative activated receptor,	164	Nuclear receptor.				fatty acid metabolic process|fatty acid transport|negative regulation of appetite|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fatty acid beta-oxidation|regulation of cellular ketone metabolic process by positive regulation of transcription from an RNA polymerase II promoter|regulation of glycolysis by positive regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|ligand-regulated transcription factor activity|lipid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|ubiquitin conjugating enzyme binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00522)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Clofibrate(DB00636)|Fenofibrate(DB01039)|Gemfibrozil(DB01241)|Simvastatin(DB00641)	GCCTTTCTGTCGGGATGTCAC	0.488												
PKDREJ	10343	broad.mit.edu	37	22	46655729	46655729	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:46655729A>G	uc003bhh.2	-	1	3491	c.3491T>C	c.(3490-3492)ATT>ACT	p.I1164T		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1164	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		AGGGATCACAATCACCTTGGC	0.488												
CELSR1	9620	broad.mit.edu	37	22	46930187	46930187	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:46930187C>T	uc003bhw.1	-	1	2881	c.2881G>A	c.(2881-2883)GTG>ATG	p.V961M		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	961	Extracellular (Potential).|Cadherin 7.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		TACACGGCCACATTCTCCCGG	0.607												
GRAMD4	23151	broad.mit.edu	37	22	47068811	47068811	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:47068811T>A	uc003bhx.2	+	13	1195	c.1156T>A	c.(1156-1158)TAC>AAC	p.Y386N	GRAMD4_uc010had.2_Missense_Mutation_p.Y325N|GRAMD4_uc003bhy.2_5'Flank	NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	386					apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		GCGCGCCAAGTACGACACGCC	0.607												
BRD1	23774	broad.mit.edu	37	22	50197911	50197911	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:50197911C>T	uc003biv.2	-	2	1952	c.1465G>A	c.(1465-1467)GGG>AGG	p.G489R	BRD1_uc011arf.1_Missense_Mutation_p.G84R|BRD1_uc011arg.1_Missense_Mutation_p.G543R|BRD1_uc011arh.1_Missense_Mutation_p.G489R|BRD1_uc003biu.3_Missense_Mutation_p.G489R	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	489					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		AGGGGGGCCCCGTTCCTGGAC	0.612												
TUBGCP6	85378	broad.mit.edu	37	22	50664613	50664613	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:50664613A>G	uc003bkb.1	-	9	2211	c.1699T>C	c.(1699-1701)TTG>CTG	p.L567L	TUBGCP6_uc010har.1_Silent_p.L567L|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_5'Flank|TUBGCP6_uc003bkd.1_5'UTR	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	567					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GTCCAGTACAACTTATCTAAG	0.577												
PLXNB2	23654	broad.mit.edu	37	22	50728169	50728169	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:50728169G>A	uc003bkv.3	-	3	951	c.845C>T	c.(844-846)GCC>GTC	p.A282V		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	282	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		AGCCACGGAGGCGGCCAGGCA	0.662												
SBF1	6305	broad.mit.edu	37	22	50897733	50897733	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:50897733C>T	uc003blh.2	-	28	3972	c.3777G>A	c.(3775-3777)TCG>TCA	p.S1259S	SBF1_uc011arx.1_Silent_p.S923S	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1259	Myotubularin phosphatase.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		TGTTGCGTCCCGACGCGTCGG	0.677												
SBF1	6305	broad.mit.edu	37	22	50898519	50898519	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:50898519A>G	uc003blh.2	-	26	3548	c.3353T>C	c.(3352-3354)ATG>ACG	p.M1118T	SBF1_uc011arx.1_Missense_Mutation_p.M782T	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1118					protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		CAGGCTGCTCATGGTCATGCG	0.677												
SBF1	6305	broad.mit.edu	37	22	50900413	50900413	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:50900413G>T	uc003blh.2	-	20	2727	c.2532C>A	c.(2530-2532)ACC>ACA	p.T844T	SBF1_uc011arx.1_Silent_p.T508T|SBF1_uc003bli.2_Silent_p.T845T	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	844					protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		GGTGGTCGCTGGTGACCCCAC	0.612												
SBF1	6305	broad.mit.edu	37	22	50906258	50906258	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:50906258T>C	uc003blh.2	-	3	431	c.236A>G	c.(235-237)TAC>TGC	p.Y79C	SBF1_uc011arx.1_5'Flank|SBF1_uc003bli.2_Missense_Mutation_p.Y79C	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	79	UDENN.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		GCAGGCGCAGTAGTGGCGCTC	0.612												
MIOX	55586	broad.mit.edu	37	22	50928213	50928213	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:50928213G>A	uc003bll.1	+	10	900	c.786G>A	c.(784-786)CCG>CCA	p.P262P	MIOX_uc003blm.1_Missense_Mutation_p.G258R|MIOX_uc003bln.1_Missense_Mutation_p.G219R	NM_017584	NP_060054	Q9UGB7	MIOX_HUMAN	myo-inositol oxygenase	262					inositol catabolic process	cytoplasm|inclusion body	aldo-keto reductase (NADP) activity|ferric iron binding|inositol oxygenase activity				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CGGACCTGCCGGACGTGGACA	0.652												
KLHDC7B	113730	broad.mit.edu	37	22	50987826	50987826	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:50987826G>A	uc003bmi.2	+	1	1365	c.1231G>A	c.(1231-1233)GGT>AGT	p.G411S		NM_138433	NP_612442	Q96G42	KLD7B_HUMAN	kelch domain containing 7B	411	Kelch 3.									central_nervous_system(1)	1		all_cancers(38;1.53e-10)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		OV - Ovarian serous cystadenocarcinoma(4;7.49e-69)|all cancers(3;9.79e-66)|Epithelial(4;1.3e-63)|GBM - Glioblastoma multiforme(4;0.000399)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CTATGCCATCGGTGGCGAATG	0.662												
CHKB	1120	broad.mit.edu	37	22	51018465	51018465	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:51018465T>C	uc003bms.2	-	8	1083	c.865A>G	c.(865-867)ACT>GCT	p.T289A	CPT1B_uc003bmk.3_5'Flank|CPT1B_uc003bml.2_5'Flank|CPT1B_uc003bmm.2_5'Flank|CPT1B_uc003bmo.2_5'Flank|CPT1B_uc011asa.1_5'Flank|CPT1B_uc003bmn.2_5'Flank|CPT1B_uc011asb.1_5'Flank|CHKB-CPT1B_uc003bmp.2_5'Flank|CHKB-CPT1B_uc003bmt.1_Missense_Mutation_p.T80A|CHKB-CPT1B_uc003bmu.2_Missense_Mutation_p.T168A|CHKB_uc003bmv.2_Missense_Mutation_p.T289A|LOC100144603_uc003bmw.3_5'Flank	NM_005198	NP_005189	Q9Y259	CHKB_HUMAN	choline kinase beta	289					phosphatidylethanolamine biosynthetic process		ATP binding|choline kinase activity|ethanolamine kinase activity				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;4.04e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.79e-74)|Epithelial(4;6.17e-70)|GBM - Glioblastoma multiforme(4;5.68e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.205)	Choline(DB00122)	TCCTCGTGAGTATAATCATAA	0.532												
MAPK8IP2	23542	broad.mit.edu	37	22	51040316	51040316	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:51040316G>A	uc003bmx.2	+	2	281	c.164G>A	c.(163-165)TGT>TAT	p.C55Y	MAPK8IP2_uc003bmy.2_5'Flank	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	55					behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TCAGACCACTGTGAGAAGGTG	0.537												
ACR	49	broad.mit.edu	37	22	51177745	51177745	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:51177745C>T	uc003bnh.3	+	2	136	c.124C>T	c.(124-126)CGC>TGC	p.R42C	uc003bng.2_5'Flank|ACR_uc010hbh.1_Missense_Mutation_p.R42C	NM_001097	NP_001088	P10323	ACRO_HUMAN	acrosin precursor	42					acrosome matrix dispersal|activation of adenylate cyclase activity	acrosomal matrix|protein complex	amidase activity|copper ion binding|DNA binding|drug binding|fucose binding|mannose binding|protein binding|serine-type endopeptidase activity|zinc ion binding				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;1.1e-06)|LUAD - Lung adenocarcinoma(64;0.247)		GGGTGGTGTCCGCATCGTCGG	0.607												
CHL1	10752	broad.mit.edu	37	3	431057	431057	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:431057G>A	uc003bou.2	+	19	2593	c.2322G>A	c.(2320-2322)ACG>ACA	p.T774T	CHL1_uc003bot.2_Silent_p.T790T|CHL1_uc003bow.1_Silent_p.T774T|CHL1_uc011asi.1_Silent_p.T790T	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	774	Fibronectin type-III 2.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		GGGTGATGACGCCTGCTGTCT	0.438												
CNTN6	27255	broad.mit.edu	37	3	1414032	1414032	+	Silent	SNP	C	C	T	rs138661122		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:1414032C>T	uc003boz.2	+	13	1809	c.1542C>T	c.(1540-1542)GGC>GGT	p.G514G	CNTN6_uc011asj.1_Silent_p.G442G|CNTN6_uc003bpa.2_Silent_p.G514G	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	514	Ig-like C2-type 6.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TTACAGTTGGCGAGAGTATAG	0.393												
LRRN1	57633	broad.mit.edu	37	3	3886572	3886572	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:3886572A>G	uc003bpt.3	+	2	1008	c.247A>G	c.(247-249)AAC>GAC	p.N83D	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	83	Extracellular (Potential).|LRR 1.					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		ACAGAGCAATAACATCGCAAA	0.448												
C3orf32	51066	broad.mit.edu	37	3	8671348	8671348	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:8671348A>G	uc003bqu.2	-	7	768	c.522_splice	c.e7+1	p.T174_splice	C3orf32_uc003bqz.2_Splice_Site_p.T174_splice|C3orf32_uc003bqt.2_Splice_Site_p.T123_splice|C3orf32_uc011atg.1_Splice_Site_p.T196_splice|C3orf32_uc003bqv.2_Splice_Site_p.T123_splice|C3orf32_uc003bqw.2_Splice_Site|C3orf32_uc003bqx.2_Splice_Site|C3orf32_uc003bqy.2_Splice_Site_p.T174_splice	NM_015931	NP_057015	Q9Y2M2	CC032_HUMAN	hypothetical protein LOC51066											skin(1)	1						CAGATGACTCACCGTGCCCGC	0.358												
THUMPD3	25917	broad.mit.edu	37	3	9413199	9413199	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:9413199C>T	uc003bro.3	+	4	934	c.786C>T	c.(784-786)GAC>GAT	p.D262D	LOC440944_uc003brm.2_Intron|THUMPD3_uc003brn.3_Silent_p.D262D	NM_001114092	NP_001107564	Q9BV44	THUM3_HUMAN	THUMP domain containing 3	262	THUMP.						methyltransferase activity|protein binding|RNA binding			ovary(1)	1	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.101)		GGAAGGCCGACATGACCAACT	0.433												
SETD5	55209	broad.mit.edu	37	3	9488951	9488951	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:9488951A>C	uc003brt.2	+	14	2177	c.1742A>C	c.(1741-1743)CAG>CCG	p.Q581P	SETD5_uc003brs.1_Missense_Mutation_p.Q562P|SETD5_uc003bru.2_Missense_Mutation_p.Q483P|SETD5_uc003brv.2_Missense_Mutation_p.Q470P|SETD5_uc010hck.2_Missense_Mutation_p.Q63P|SETD5_uc003brx.2_Missense_Mutation_p.Q250P	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	581										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		AGCACCCCACAGAGTGTTGGT	0.463												
CPNE9	151835	broad.mit.edu	37	3	9768398	9768398	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:9768398T>C	uc003bsd.2	+	18	1565	c.1394T>C	c.(1393-1395)ATG>ACG	p.M465T		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	465	VWFA.									ovary(2)	2	Medulloblastoma(99;0.227)					GGACCAGCCATGTTTGAGGGT	0.552												
BRPF1	7862	broad.mit.edu	37	3	9775910	9775910	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:9775910G>A	uc003bse.2	+	2	485	c.86G>A	c.(85-87)CGA>CAA	p.R29Q	BRPF1_uc003bsf.2_Missense_Mutation_p.R29Q|BRPF1_uc003bsg.2_Missense_Mutation_p.R29Q|BRPF1_uc011ati.1_Missense_Mutation_p.R29Q	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	29	C2H2-type.				histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					GAGACCTGCCGAAAGGTCTAC	0.532												
OGG1	4968	broad.mit.edu	37	3	9792665	9792665	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:9792665A>G	uc003bsi.2	+	2	517	c.174A>G	c.(172-174)GTA>GTG	p.V58V	OGG1_uc003bsh.2_Silent_p.V58V|OGG1_uc003bsj.2_Silent_p.V58V|OGG1_uc003bsk.2_Silent_p.V58V|OGG1_uc003bsl.2_Silent_p.V58V|OGG1_uc003bsm.2_Silent_p.V58V|OGG1_uc003bsn.2_Silent_p.V58V|OGG1_uc003bso.2_Silent_p.V58V|OGG1_uc003bsp.1_5'Flank|OGG1_uc010hcm.1_5'Flank|OGG1_uc003bsq.1_5'Flank|OGG1_uc003bsr.1_5'Flank	NM_002542	NP_002533	O15527	OGG1_HUMAN	8-oxoguanine DNA-glycosylase 1 isoform 1a	58					depurination|nucleotide-excision repair|regulation of protein import into nucleus, translocation|regulation of transcription, DNA-dependent|response to oxidative stress|response to radiation	mitochondrion|nuclear matrix|nuclear speck	damaged DNA binding|endonuclease activity|oxidized purine base lesion DNA N-glycosylase activity|protein binding				0	Medulloblastoma(99;0.227)					GGAGTGGTGTACTAGCGGATC	0.567								BER_DNA_glycosylases				
ARPC4	10093	broad.mit.edu	37	3	9841903	9841903	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:9841903A>G	uc003bsz.1	+	3	736	c.157A>G	c.(157-159)ATC>GTC	p.I53V	ARPC4_uc003bta.1_5'UTR|ARPC4_uc003btb.1_5'UTR|ARPC4_uc003btc.1_5'UTR|TTLL3_uc003btd.3_5'UTR	NM_005718	NP_005709	P59998	ARPC4_HUMAN	actin related protein 2/3 complex subunit 4	53					actin filament polymerization|actin nucleation	Arp2/3 protein complex|cell projection|cytoplasm	actin binding				0	Medulloblastoma(99;0.227)					ACCTGTGACCATCAGCAGGAA	0.483												
CRELD1	78987	broad.mit.edu	37	3	9982597	9982597	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:9982597G>A	uc003bug.2	+	6	642	c.524G>A	c.(523-525)CGA>CAA	p.R175Q	CIDEC_uc003bto.2_Intron|CRELD1_uc003buf.2_Missense_Mutation_p.R175Q|CRELD1_uc003buh.2_Missense_Mutation_p.R175Q|CRELD1_uc003bui.2_Missense_Mutation_p.R175Q|CRELD1_uc003buj.2_RNA	NM_001077415	NP_001070883	Q96HD1	CREL1_HUMAN	cysteine-rich with EGF-like domains 1 isoform 3	175	Extracellular (Potential).|EGF-like 1.				cardiac septum development|endocardial cushion development	integral to membrane	calcium ion binding			ovary(1)	1						GAAGGGACACGAGGGGGCAGC	0.627												
FANCD2	2177	broad.mit.edu	37	3	10076903	10076903	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:10076903A>T	uc003buw.2	+	6	502	c.424A>T	c.(424-426)ATT>TTT	p.I142F	FANCD2_uc003bux.1_Missense_Mutation_p.I142F|FANCD2_uc003buy.1_Missense_Mutation_p.I142F|FANCD2_uc003buv.2_Missense_Mutation_p.I142F	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	142	Interaction with FANCE.				DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		GCTTCTGGGGATTGACATACT	0.378			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia			
IRAK2	3656	broad.mit.edu	37	3	10264468	10264468	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:10264468C>T	uc003bve.1	+	9	1238	c.1162C>T	c.(1162-1164)CGG>TGG	p.R388W		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	388	Protein kinase.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						GGATTTCATCCGGGTGGGGCA	0.527												
SLC6A11	6538	broad.mit.edu	37	3	10916650	10916650	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:10916650T>C	uc003bvz.2	+	6	795	c.761T>C	c.(760-762)GTA>GCA	p.V254A		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	254	Helical; Name=5; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		GCACAGGTTGTATACGTGACT	0.408												
SLC6A1	6529	broad.mit.edu	37	3	11078588	11078588	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:11078588G>A	uc010hdq.2	+	16	2147	c.1736G>A	c.(1735-1737)CGC>CAC	p.R579H		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	579	Cytoplasmic (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	GACATCGTTCGCCCAGAGAAT	0.637												
SYN2	6854	broad.mit.edu	37	3	12208796	12208796	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:12208796C>T	uc003bwm.2	+	12	1207	c.1043C>T	c.(1042-1044)GCC>GTC	p.A348V	SYN2_uc003bwl.1_Missense_Mutation_p.A348V|SYN2_uc003bwn.2_Missense_Mutation_p.A22V	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	348					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						GAGCAGATTGCCATGTCAGAC	0.512												
NUP210	23225	broad.mit.edu	37	3	13372109	13372109	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:13372109G>A	uc003bxv.1	-	30	4044	c.3961C>T	c.(3961-3963)CGC>TGC	p.R1321C		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1321	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TCCAGGACGCGGTAGCTCAGA	0.507												
FBLN2	2199	broad.mit.edu	37	3	13670760	13670760	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:13670760T>C	uc011avb.1	+	12	2794	c.2669T>C	c.(2668-2670)TTT>TCT	p.F890S	FBLN2_uc011auz.1_Missense_Mutation_p.F916S|FBLN2_uc011ava.1_Missense_Mutation_p.F937S|FBLN2_uc011avc.1_Missense_Mutation_p.F937S	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	890	EGF-like 6; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			AAAGCCGGCTTTCAGCGGGAT	0.642												
WNT7A	7476	broad.mit.edu	37	3	13896052	13896052	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:13896052G>A	uc003bye.1	-	3	852	c.547C>T	c.(547-549)CAC>TAC	p.H183Y		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	183					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						TCGTTGTTGTGCAAGTTCATG	0.507												
XPC	7508	broad.mit.edu	37	3	14199626	14199626	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:14199626T>C	uc011ave.1	-	9	1861	c.1757A>G	c.(1756-1758)GAC>GGC	p.D586G	XPC_uc011avf.1_Missense_Mutation_p.D393G|XPC_uc011avg.1_Missense_Mutation_p.D549G	NM_004628	NP_004619	Q01831	XPC_HUMAN	xeroderma pigmentosum, complementation group C	586	Interaction with RAD23B.				nucleotide-excision repair, DNA damage recognition|nucleotide-excision repair, DNA damage removal	cytoplasm|nucleoplasm|XPC complex	bubble DNA binding|damaged DNA binding|loop DNA binding|protein binding|single-stranded DNA binding			ovary(2)|breast(1)	3						CCAGACTGGGTCGTACCTCTG	0.577			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		NER	Xeroderma_Pigmentosum			
C3orf20	84077	broad.mit.edu	37	3	14768513	14768513	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:14768513T>C	uc003byy.2	+	11	2076	c.1672T>C	c.(1672-1674)TCT>CCT	p.S558P	C3orf20_uc003byz.2_Missense_Mutation_p.S436P|C3orf20_uc003bza.2_Missense_Mutation_p.S436P|C3orf20_uc003bzb.1_Missense_Mutation_p.S59P	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	558						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						GTTCATTAATTCTATCTTGCT	0.522												
MRPS25	64432	broad.mit.edu	37	3	15094962	15094962	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:15094962T>C	uc003bzl.2	-	3	369	c.254A>G	c.(253-255)CAG>CGG	p.Q85R	MRPS25_uc011avl.1_Intron|MRPS25_uc011avm.1_Missense_Mutation_p.Q85R	NM_022497	NP_071942	P82663	RT25_HUMAN	mitochondrial ribosomal protein S25	85					translation	mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						CACCAGGACCTGCTCCCCAGA	0.468												
ZFYVE20	64145	broad.mit.edu	37	3	15116352	15116352	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:15116352C>T	uc003bzm.1	-	14	1906	c.1292G>A	c.(1291-1293)CGC>CAC	p.R431H	ZFYVE20_uc010hek.1_Missense_Mutation_p.R431H	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	431	Necessary for the interaction with RAB4A.|Necessary for the interaction with EHD1.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						AGGGCCCCTGCGGAGAGATGC	0.657												
ZFYVE20	64145	broad.mit.edu	37	3	15131914	15131914	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:15131914T>C	uc003bzm.1	-	5	895	c.281A>G	c.(280-282)CAG>CGG	p.Q94R	ZFYVE20_uc010hek.1_Missense_Mutation_p.Q94R|ZFYVE20_uc011avn.1_Missense_Mutation_p.Q94R	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	94					blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						ACCAAGCTCCTGGGGTTCCCA	0.294												
HACL1	26061	broad.mit.edu	37	3	15604967	15604967	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:15604967T>C	uc003caf.2	-	16	1762	c.1602A>G	c.(1600-1602)ACA>ACG	p.T534T	HACL1_uc011avr.1_RNA|HACL1_uc011avs.1_Silent_p.T507T|HACL1_uc011avt.1_Silent_p.T474T|HACL1_uc003cag.2_Silent_p.T178T|HACL1_uc011avu.1_Silent_p.T452T|HACL1_uc010hep.2_Silent_p.T293T	NM_012260	NP_036392	Q9UJ83	HACL1_HUMAN	2-hydroxyphytanoyl-CoA lyase	534					fatty acid alpha-oxidation	peroxisomal matrix	carbon-carbon lyase activity|identical protein binding|magnesium ion binding|thiamine pyrophosphate binding				0						GTTCTTCTGGTGTTTGTACAA	0.453												
HACL1	26061	broad.mit.edu	37	3	15609957	15609957	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:15609957T>C	uc003caf.2	-	13	1392	c.1232A>G	c.(1231-1233)AAC>AGC	p.N411S	HACL1_uc011avr.1_RNA|HACL1_uc011avs.1_Missense_Mutation_p.N384S|HACL1_uc011avt.1_Missense_Mutation_p.N351S|HACL1_uc003cag.2_Missense_Mutation_p.N55S|HACL1_uc011avu.1_Missense_Mutation_p.N329S|HACL1_uc010hep.2_Missense_Mutation_p.N170S	NM_012260	NP_036392	Q9UJ83	HACL1_HUMAN	2-hydroxyphytanoyl-CoA lyase	411	Thiamine pyrophosphate binding.				fatty acid alpha-oxidation	peroxisomal matrix	carbon-carbon lyase activity|identical protein binding|magnesium ion binding|thiamine pyrophosphate binding				0						AGGAAGGTAGTTCTGAAGCAC	0.373												
HACL1	26061	broad.mit.edu	37	3	15610025	15610025	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:15610025T>C	uc003caf.2	-	13	1324	c.1164A>G	c.(1162-1164)CTA>CTG	p.L388L	HACL1_uc011avr.1_RNA|HACL1_uc011avs.1_Silent_p.L361L|HACL1_uc011avt.1_Silent_p.L328L|HACL1_uc003cag.2_Silent_p.L32L|HACL1_uc011avu.1_Silent_p.L306L|HACL1_uc010hep.2_Silent_p.L147L	NM_012260	NP_036392	Q9UJ83	HACL1_HUMAN	2-hydroxyphytanoyl-CoA lyase	388					fatty acid alpha-oxidation	peroxisomal matrix	carbon-carbon lyase activity|identical protein binding|magnesium ion binding|thiamine pyrophosphate binding				0						AGTCTCTAGGTAGTTGTTCTT	0.378												
ANKRD28	23243	broad.mit.edu	37	3	15726863	15726863	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:15726863T>C	uc003caj.1	-	21	2312	c.2169A>G	c.(2167-2169)ATA>ATG	p.I723M	ANKRD28_uc003cai.1_Missense_Mutation_p.I569M|ANKRD28_uc011avz.1_Missense_Mutation_p.I569M|ANKRD28_uc003cak.1_RNA|ANKRD28_uc011awa.1_RNA|ANKRD28_uc003cal.1_Missense_Mutation_p.I753M|ANKRD28_uc003cam.2_Missense_Mutation_p.I756M	NM_015199	NP_056014	O15084	ANR28_HUMAN	ankyrin repeat domain 28	723	ANK 21.					nucleoplasm	protein binding			breast(1)	1						CAGACAGGTGTATAGGCGTCC	0.488												
RFTN1	23180	broad.mit.edu	37	3	16358352	16358352	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:16358352T>C	uc003cay.2	-	10	2002	c.1720A>G	c.(1720-1722)ACG>GCG	p.T574A	RFTN1_uc010hes.2_Missense_Mutation_p.T538A|OXNAD1_uc003cax.2_Intron|OXNAD1_uc011awb.1_Intron	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	574						plasma membrane				ovary(3)|central_nervous_system(1)	4						TCTTCAACCGTACCAAGCTCT	0.552												
SATB1	6304	broad.mit.edu	37	3	18428081	18428081	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:18428081C>T	uc003cbh.2	-	8	2964	c.1229G>A	c.(1228-1230)CGA>CAA	p.R410Q	SATB1_uc003cbi.2_Missense_Mutation_p.R410Q|SATB1_uc003cbj.2_Missense_Mutation_p.R410Q	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	410	CUT 1.|Matrix attachment region (MAR) DNA- binding.			R->N: Impaired MAR-DNA-binding.	cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						CTCTTCCTTTCGGAGGATTTC	0.507												
SATB1	6304	broad.mit.edu	37	3	18462397	18462397	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:18462397A>G	uc003cbh.2	-	2	1798	c.63T>C	c.(61-63)AGT>AGC	p.S21S	SATB1_uc003cbi.2_Silent_p.S21S|SATB1_uc003cbj.2_Silent_p.S21S	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	21	Nuclear localization signal.				cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						CCTTCGGATCACTCACATTGT	0.498												
KCNH8	131096	broad.mit.edu	37	3	19498275	19498275	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:19498275T>A	uc003cbk.1	+	11	2036	c.1841T>A	c.(1840-1842)ATT>AAT	p.I614N	KCNH8_uc010hex.1_Missense_Mutation_p.I75N	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	614	cNMP.|Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						GGGGATTTAATTGGAGCAAAT	0.373												
SGOL1	151648	broad.mit.edu	37	3	20225109	20225109	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:20225109T>C	uc003cbs.2	-	3	517	c.330A>G	c.(328-330)GAA>GAG	p.E110E	SGOL1_uc003cbr.2_Silent_p.E110E|SGOL1_uc010hfa.2_Silent_p.E110E|SGOL1_uc003cbt.2_Silent_p.E110E|SGOL1_uc003cbu.2_Silent_p.E110E|SGOL1_uc003cbv.2_Silent_p.E110E|SGOL1_uc003cbw.2_Silent_p.E110E|SGOL1_uc003cbx.2_Silent_p.E110E|SGOL1_uc003cby.2_Silent_p.E110E|SGOL1_uc003cbz.2_Silent_p.E110E|SGOL1_uc003cca.2_Silent_p.E110E|SGOL1_uc003ccb.2_Silent_p.E110E|SGOL1_uc003ccc.2_Silent_p.E110E	NM_001012410	NP_001012410	Q5FBB7	SGOL1_HUMAN	shugoshin-like 1 isoform A2	110	Necessary for interaction with PPP2CA and PPP2R1A.				attachment of spindle microtubules to kinetochore|cell division|centriole-centriole cohesion|meiotic chromosome segregation|mitotic prometaphase	centrosome|condensed chromosome kinetochore|cytosol|mitotic cohesin complex|spindle pole	protein binding				0						CCTGAGCAGGTTCTACTGTTT	0.323												
SLC4A7	9497	broad.mit.edu	37	3	27490198	27490198	+	Missense_Mutation	SNP	C	C	T	rs149158126		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:27490198C>T	uc003cdv.2	-	3	277	c.206G>A	c.(205-207)CGG>CAG	p.R69Q	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Missense_Mutation_p.R74Q|SLC4A7_uc011aww.1_Missense_Mutation_p.R78Q|SLC4A7_uc011awx.1_Missense_Mutation_p.R78Q|SLC4A7_uc011awy.1_Missense_Mutation_p.R74Q|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Missense_Mutation_p.R74Q|SLC4A7_uc011axb.1_Missense_Mutation_p.R78Q|SLC4A7_uc010hfm.2_Missense_Mutation_p.R74Q|SLC4A7_uc003cdw.2_Missense_Mutation_p.R69Q	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	69	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						TTTTCTTCTCCGGTGGTGATG	0.398												
EOMES	8320	broad.mit.edu	37	3	27758600	27758600	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:27758600T>C	uc003cdx.2	-	6	2022	c.2022A>G	c.(2020-2022)AAA>AAG	p.K674K	EOMES_uc003cdy.3_Silent_p.K693K|EOMES_uc010hfn.2_3'UTR|EOMES_uc011axc.1_Silent_p.K398K	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	674	Required for transcription activation (By similarity).				CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						CTCCCATGCCTTTTGAGGTGT	0.393												
OSBPL10	114884	broad.mit.edu	37	3	31725576	31725576	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:31725576G>A	uc003cev.2	-	9	1657	c.1276C>T	c.(1276-1278)CGA>TGA	p.R426*	OSBPL10_uc003ceu.1_Nonsense_Mutation_p.R183*|OSBPL10_uc011axf.1_Nonsense_Mutation_p.R362*	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	426					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		AGCAAAGATCGCTTCTCCAGG	0.507												
GPD1L	23171	broad.mit.edu	37	3	32201136	32201136	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:32201136G>A	uc003cew.2	+	7	989	c.929G>A	c.(928-930)CGC>CAC	p.R310H		NM_015141	NP_055956	Q8N335	GPD1L_HUMAN	glycerol-3-phosphate dehydrogenase 1-like	310					glycerol-3-phosphate catabolic process	glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|NAD binding|protein homodimerization activity				0						GAAGTGTACCGCATCCTCAAA	0.453												
TMPPE	643853	broad.mit.edu	37	3	33135378	33135378	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:33135378A>G	uc003cfk.2	-	2	501	c.310T>C	c.(310-312)TTC>CTC	p.F104L	GLB1_uc003cfh.1_Intron|GLB1_uc003cfi.1_Intron|GLB1_uc003cfj.1_Intron|GLB1_uc011axk.1_Intron|TMPPE_uc011axl.1_Intron	NM_001039770	NP_001034859	Q6ZT21	TMPPE_HUMAN	transmembrane protein with	104	Helical; (Potential).					integral to membrane	metal ion binding				0						ACTAAAAAGAACATGGTAAAG	0.527												
UBP1	7342	broad.mit.edu	37	3	33458253	33458253	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:33458253T>C	uc003cfq.3	-	3	869	c.339A>G	c.(337-339)GTA>GTG	p.V113V	UBP1_uc003cfr.3_Silent_p.V113V|UBP1_uc010hga.2_Silent_p.V113V	NM_014517	NP_055332	Q9NZI7	UBIP1_HUMAN	upstream binding protein 1 (LBP-1a) isoform a	113					negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|viral genome replication	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			kidney(2)	2						TCCTTACCTTTACTAATTTTC	0.289												
PDCD6IP	10015	broad.mit.edu	37	3	33855092	33855092	+	Silent	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:33855092T>G	uc003cfx.2	+	3	461	c.306T>G	c.(304-306)GGT>GGG	p.G102G	PDCD6IP_uc011axv.1_Silent_p.G102G|PDCD6IP_uc003cfy.2_Silent_p.G102G	NM_013374	NP_037506	Q8WUM4	PDC6I_HUMAN	programmed cell death 6 interacting protein	102	BRO1.				apoptosis|cell cycle|cell division|interspecies interaction between organisms|protein transport	cytosol|melanosome|microtubule organizing center	calcium-dependent protein binding			ovary(1)|skin(1)	2						TCGATAAAGGTTCACTTTTTG	0.303												
ARPP21	10777	broad.mit.edu	37	3	35731623	35731623	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:35731623C>T	uc003cgb.2	+	8	800	c.536C>T	c.(535-537)GCT>GTT	p.A179V	ARPP21_uc003cga.2_Missense_Mutation_p.A179V|ARPP21_uc011axy.1_Missense_Mutation_p.A179V|ARPP21_uc003cgf.2_Missense_Mutation_p.A15V	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	179	R3H.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						GATTTCATTGCTGACAACAAG	0.323												
ARPP21	10777	broad.mit.edu	37	3	35756944	35756944	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:35756944A>G	uc003cgb.2	+	12	1175	c.911A>G	c.(910-912)CAG>CGG	p.Q304R	ARPP21_uc003cga.2_Missense_Mutation_p.Q270R|ARPP21_uc011axy.1_Missense_Mutation_p.Q270R|ARPP21_uc003cgf.2_Missense_Mutation_p.Q106R	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	304						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						GTTTGCTCCCAGGAAAGCCTT	0.328												
TRANK1	9881	broad.mit.edu	37	3	36873767	36873767	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:36873767A>T	uc003cgj.2	-	12	5827	c.5525T>A	c.(5524-5526)GTC>GAC	p.V1842D		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2392					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTTGATGAGGACATTCATGAA	0.507												
GOLGA4	2803	broad.mit.edu	37	3	37368264	37368264	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:37368264T>C	uc003cgv.2	+	14	5191	c.4887T>C	c.(4885-4887)CTT>CTC	p.L1629L	GOLGA4_uc010hgr.1_Silent_p.L1190L|GOLGA4_uc003cgw.2_Silent_p.L1651L|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Silent_p.L1510L	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	1629	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						AAGATAGGCTTGAGTCAGAAA	0.363												
VILL	50853	broad.mit.edu	37	3	38043035	38043035	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:38043035A>G	uc003chj.2	+	12	1557	c.1271A>G	c.(1270-1272)TAC>TGC	p.Y424C	VILL_uc003chl.2_Missense_Mutation_p.Y424C|VILL_uc010hgu.2_Missense_Mutation_p.Y254C	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	424	Gelsolin-like 4.				actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		CTTGTGCTCTACACATACCAG	0.592												
DLEC1	9940	broad.mit.edu	37	3	38127756	38127756	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:38127756A>G	uc003cho.1	+	9	1481	c.1460A>G	c.(1459-1461)TAC>TGC	p.Y487C	DLEC1_uc003chp.1_Missense_Mutation_p.Y487C|DLEC1_uc010hgv.1_Missense_Mutation_p.Y487C|DLEC1_uc010hgw.1_Missense_Mutation_p.Y128C|DLEC1_uc003chq.1_Intron	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	487					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		GACTGTGGTTACTGCCTCATT	0.488												
OXSR1	9943	broad.mit.edu	37	3	38263180	38263180	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:38263180T>C	uc003chy.2	+	6	942	c.600_splice	c.e6+2	p.Q200_splice	OXSR1_uc010hhb.2_Splice_Site_p.Q134_splice|OXSR1_uc010hha.1_Splice_Site_p.Q132_splice	NM_005109	NP_005100	O95747	OXSR1_HUMAN	oxidative-stress responsive 1						intracellular protein kinase cascade|response to oxidative stress		ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		ATGGAACAGGTACCGTGTCTT	0.393												
OXSR1	9943	broad.mit.edu	37	3	38287645	38287645	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:38287645G>A	uc003chy.2	+	13	1532	c.1190G>A	c.(1189-1191)GGG>GAG	p.G397E	OXSR1_uc010hhb.2_Missense_Mutation_p.G331E	NM_005109	NP_005100	O95747	OXSR1_HUMAN	oxidative-stress responsive 1	397					intracellular protein kinase cascade|response to oxidative stress		ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		CAGCCAGCTGGGCAGATTGCT	0.507												
SLC22A13	9390	broad.mit.edu	37	3	38316147	38316147	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:38316147G>A	uc003chz.3	+	3	589	c.535G>A	c.(535-537)GGC>AGC	p.G179S	SLC22A13_uc011aym.1_Intron|SLC22A13_uc011ayn.1_Missense_Mutation_p.G179S	NM_004256	NP_004247	Q9Y226	S22AD_HUMAN	solute carrier family 22 (organic anion	179	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0533)|Kidney(284;0.067)		CACCCTCATCGGCCTGGCCAC	0.607												
SCN5A	6331	broad.mit.edu	37	3	38603961	38603961	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:38603961C>T	uc003cio.2	-	22	4102	c.3908G>A	c.(3907-3909)CGG>CAG	p.R1303Q	SCN5A_uc003cin.2_Missense_Mutation_p.R1302Q|SCN5A_uc003cil.3_Missense_Mutation_p.R1303Q|SCN5A_uc010hhi.2_Missense_Mutation_p.R1303Q|SCN5A_uc010hhk.2_Missense_Mutation_p.R1302Q|SCN5A_uc011ayr.1_Missense_Mutation_p.R1249Q|SCN5A_uc010hhj.1_Missense_Mutation_p.R913Q	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1303	Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ACGCAGCGTCCGCAGTGACTT	0.622												
SCN10A	6336	broad.mit.edu	37	3	38748787	38748787	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:38748787G>A	uc003ciq.2	-	25	4369	c.4369C>T	c.(4369-4371)CCC>TCC	p.P1457S		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1457					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CGTGGGATGGGCTTCTGGGGC	0.562												
SCN10A	6336	broad.mit.edu	37	3	38830483	38830483	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:38830483A>G	uc003ciq.2	-	3	434	c.434T>C	c.(433-435)GTG>GCG	p.V145A		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	145	Helical; Name=S1 of repeat I; (Potential).|I.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGTCATGCACACACAATTAAC	0.393												
SCN11A	11280	broad.mit.edu	37	3	38888509	38888509	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:38888509A>G	uc011ays.1	-	26	5251	c.5052T>C	c.(5050-5052)GAT>GAC	p.D1684D		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1684					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CGAAAAGAATATCCATGCAGT	0.468												
SCN11A	11280	broad.mit.edu	37	3	38889232	38889232	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:38889232A>G	uc011ays.1	-	26	4528	c.4329T>C	c.(4327-4329)AGT>AGC	p.S1443S		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1443	IV.|Helical; Name=S3 of repeat IV; (By similarity).				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AAATCATTGTACCTCAGGAGA	0.483												
WDR48	57599	broad.mit.edu	37	3	39111148	39111148	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:39111148G>T	uc003cit.2	+	7	595	c.585G>T	c.(583-585)TGG>TGT	p.W195C	WDR48_uc011ayt.1_Missense_Mutation_p.W186C|WDR48_uc011ayu.1_Missense_Mutation_p.W113C|WDR48_uc011ayv.1_Intron|WDR48_uc003ciu.2_RNA	NM_020839	NP_065890	Q8TAF3	WDR48_HUMAN	WD repeat domain 48	195	WD 4.				interspecies interaction between organisms|protein deubiquitination	lysosome|nucleus	protein binding			ovary(1)|breast(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		TACGGGTATGGGATCCAAGAA	0.343												
RPSA	3921	broad.mit.edu	37	3	39449253	39449253	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:39449253T>C	uc003cjp.2	+	2	194	c.109T>C	c.(109-111)TAC>CAC	p.Y37H	RPSA_uc003cjq.2_Missense_Mutation_p.Y37H|RPSA_uc003cjr.2_Missense_Mutation_p.Y37H|RPSA_uc003cjt.2_5'Flank|SNORA6_uc003cjs.1_5'Flank	NM_002295	NP_002286	P08865	RSSA_HUMAN	ribosomal protein SA	37					cell adhesion|endocrine pancreas development|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|ribosomal small subunit assembly|rRNA export from nucleus|translational elongation|translational termination|viral transcription	90S preribosome|cytosolic small ribosomal subunit|nucleus|plasma membrane	protein binding|receptor activity|ribosome binding|structural constituent of ribosome			lung(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0509)|Kidney(284;0.064)		GATGGAACAGTACATCTATAA	0.343												
ZNF619	285267	broad.mit.edu	37	3	40529325	40529325	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:40529325A>G	uc011azb.1	+	6	1722	c.1444A>G	c.(1444-1446)ACT>GCT	p.T482A	ZNF619_uc010hhz.2_Missense_Mutation_p.T433A|ZNF619_uc003ckj.2_Missense_Mutation_p.T426A|ZNF619_uc011azc.1_Missense_Mutation_p.T442A|ZNF619_uc011azd.1_Missense_Mutation_p.T398A|ZNF619_uc011aza.1_Missense_Mutation_p.T384A	NM_001145082	NP_001138554	E9PCD9	E9PCD9_HUMAN	zinc finger protein 619 isoform 1	482					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		TCAAAAGATCACTCTGGTTCA	0.473												
CTNNB1	1499	broad.mit.edu	37	3	41266486	41266486	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:41266486C>T	uc010hia.1	+	5	439	c.283C>T	c.(283-285)CGA>TGA	p.R95*	CTNNB1_uc003ckp.2_Nonsense_Mutation_p.R95*|CTNNB1_uc003ckq.2_Nonsense_Mutation_p.R95*|CTNNB1_uc003ckr.2_Nonsense_Mutation_p.R95*|CTNNB1_uc011azf.1_Nonsense_Mutation_p.R88*|CTNNB1_uc011azg.1_Nonsense_Mutation_p.R23*|uc010hib.1_RNA	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	95					adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding	p.A5_Q143del(7)|p.Q28_H134del(5)|p.W25_I140del(4)|p.T3_A126del(2)|p.V22_L139>V(2)|p.M5_N141>D(2)|p.L10_N141del(2)|p.A5_Y142>D(2)|p.A20_Q143del(1)|p.A5_Q143>E(1)|p.A13_R151del(1)|p.S23_I140del(1)|p.A20_R151del(1)|p.A20_N141del(1)|p.D11_Y142>H(1)|p.I35_K170del(1)|p.Y30_A97del(1)|p.V22_T102del(1)|p.D6_K133del(1)|p.M1_V173del(1)|p.E15_I140>V(1)|p.?(1)|p.D17_P128del(1)|p.H24_M131del(1)|p.A5_D144>D(1)|p.L7_I140del(1)|p.K19_Y142>V(1)|p.D17_A126del(1)|p.A20_L148del(1)|p.E9_I140del(1)|p.P16_K133del(1)|p.D6_I140del(1)|p.Q28_I140del(1)|p.A20_S111del(1)	CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	TCAGAGGGTACGAGCTGCTAT	0.453		15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of			
TRAK1	22906	broad.mit.edu	37	3	42261039	42261039	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:42261039A>G	uc003cky.2	+	15	2233	c.2017A>G	c.(2017-2019)ACC>GCC	p.T673A	TRAK1_uc011azi.1_Missense_Mutation_p.T652A	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	673					endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						CACCTTCACCACCTGTCGCAT	0.547												
SNRK	54861	broad.mit.edu	37	3	43388884	43388884	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:43388884C>T	uc003cms.3	+	7	1465	c.1133C>T	c.(1132-1134)ACG>ATG	p.T378M	SNRK_uc003cmt.3_Missense_Mutation_p.T378M|SNRK_uc010hik.2_Missense_Mutation_p.T378M|SNRK_uc011azr.1_Missense_Mutation_p.T172M	NM_017719	NP_060189	Q9NRH2	SNRK_HUMAN	SNF related kinase	378					myeloid cell differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.0636)|Kidney(284;0.0792)		GATGACCTCACGGCCACTCCT	0.522												
ZNF445	353274	broad.mit.edu	37	3	44489669	44489669	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:44489669G>A	uc003cnf.2	-	8	1842	c.1494C>T	c.(1492-1494)TCC>TCT	p.S498S	ZNF445_uc011azv.1_Silent_p.S486S|ZNF445_uc011azw.1_Silent_p.S498S	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	498	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		ACGCAAGATGGGAGCTATGAC	0.493												
ZNF167	55888	broad.mit.edu	37	3	44598750	44598750	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:44598750G>A	uc010hin.2	+	2	599	c.211G>A	c.(211-213)GCA>ACA	p.A71T	ZNF167_uc003cnh.2_RNA|ZNF167_uc003cni.2_Missense_Mutation_p.A71T|ZNF167_uc010hio.2_Intron|ZNF167_uc003cnj.2_Missense_Mutation_p.A71T|ZNF167_uc003cnk.2_Missense_Mutation_p.A71T	NM_018651	NP_061121	Q9P0L1	ZN167_HUMAN	zinc finger protein 167 isoform 1	71	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(197;0.0486)|Kidney(197;0.0609)		GCCGCAGGAAGCATTGAGCCG	0.582												
ZNF197	10168	broad.mit.edu	37	3	44683453	44683453	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:44683453A>G	uc003cnm.2	+	6	1037	c.831A>G	c.(829-831)GCA>GCG	p.A277A	ZNF197_uc003cnn.2_Intron|ZNF197_uc003cno.2_Intron|ZNF197_uc003cnp.2_Intron	NM_006991	NP_008922	O14709	ZN197_HUMAN	zinc finger protein 197 isoform 1	277	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|skin(1)	4				KIRC - Kidney renal clear cell carcinoma(197;0.0478)|Kidney(197;0.0598)		CTCAAAGAGCAGACTCTCATA	0.428												
ZNF35	7584	broad.mit.edu	37	3	44700955	44700955	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:44700955G>A	uc003cnq.2	+	4	1321	c.1100G>A	c.(1099-1101)TGT>TAT	p.C367Y	ZNF35_uc003cnr.2_Missense_Mutation_p.C207Y	NM_003420	NP_003411	P13682	ZNF35_HUMAN	zinc finger protein 35	367	C2H2-type 6.				cellular response to retinoic acid|spermatogenesis	nucleus|perinuclear region of cytoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(412;0.0228)		OV - Ovarian serous cystadenocarcinoma(275;2.49e-27)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)		TGTAACGACTGTGGCAAAGCC	0.448												
KIF15	56992	broad.mit.edu	37	3	44872475	44872475	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:44872475A>G	uc003cnx.3	+	26	3285	c.3136A>G	c.(3136-3138)ACC>GCC	p.T1046A	KIF15_uc010hiq.2_Missense_Mutation_p.T949A|KIF15_uc010hir.2_Missense_Mutation_p.T94A	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	1046	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		TCTGAAAGAAACCCTTAGGCT	0.393												
ZDHHC3	51304	broad.mit.edu	37	3	45000709	45000709	+	Missense_Mutation	SNP	C	C	T	rs148007027		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:45000709C>T	uc003cod.2	-	2	494	c.220G>A	c.(220-222)GTG>ATG	p.V74M	ZDHHC3_uc003cog.2_Missense_Mutation_p.V74M|ZDHHC3_uc011bad.1_Missense_Mutation_p.V74M	NM_016598	NP_057682	Q9NYG2	ZDHC3_HUMAN	zinc finger, DHHC-type containing 3 isoform 2	74	Helical; (Potential).					Golgi membrane|integral to membrane	zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00943)|KIRC - Kidney renal clear cell carcinoma(197;0.053)|Kidney(197;0.0665)		ATGCTATACACGTAGTCTCGA	0.562												
XCR1	2829	broad.mit.edu	37	3	46062826	46062826	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:46062826T>C	uc003cpe.2	-	3	838	c.614A>G	c.(613-615)TAC>TGC	p.Y205C	uc003cpd.1_5'Flank|XCR1_uc003cpf.2_Missense_Mutation_p.Y205C	NM_005283	NP_005274	P46094	XCR1_HUMAN	XC chemokine receptor 1	205	Helical; Name=5; (Potential).				chemotaxis|G-protein signaling, coupled to cyclic nucleotide second messenger|inflammatory response	integral to plasma membrane	chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		GATCTCCACGTAGCAGAACAG	0.582												
CCR1	1230	broad.mit.edu	37	3	46245390	46245390	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:46245390C>T	uc003cph.1	-	2	486	c.415G>A	c.(415-417)GTG>ATG	p.V139M	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	139	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		AAGGCAAACACGGCGTGGACG	0.512												
LTF	4057	broad.mit.edu	37	3	46480816	46480816	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:46480816G>A	uc003cpq.2	-	15	1917	c.1879C>T	c.(1879-1881)CGC>TGC	p.R627C	LTF_uc003fzr.2_Missense_Mutation_p.R583C|LTF_uc010hjh.2_Missense_Mutation_p.R625C|LTF_uc003cpr.2_Missense_Mutation_p.R614C	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	627	Transferrin-like 2.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	TGTTTCAGGCGTTCCACCTTA	0.547												
ALS2CL	259173	broad.mit.edu	37	3	46721994	46721994	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:46721994G>A	uc003cqa.1	-	14	1664	c.1474C>T	c.(1474-1476)CGC>TGC	p.R492C	ALS2CL_uc003cpz.1_Missense_Mutation_p.R7C|ALS2CL_uc003cqb.1_Missense_Mutation_p.R492C|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	492	MORN 6.				endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		GGGCCGTGGCGCTGACCAGCC	0.602												
PRSS45	377047	broad.mit.edu	37	3	46784041	46784041	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:46784041A>G	uc010hjl.2	-	4	486	c.486T>C	c.(484-486)GTT>GTC	p.V162V	PRSS45_uc011bam.1_RNA	NM_199183	NP_954652	Q7RTY3	PRS45_HUMAN	testis serine protease 5	194	Peptidase S1.				proteolysis		serine-type endopeptidase activity				0						ATCTGCCCTCAACTTCACAAG	0.567												
PTH1R	5745	broad.mit.edu	37	3	46944090	46944090	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:46944090A>G	uc003cqm.2	+	14	1489	c.1286A>G	c.(1285-1287)TAC>TGC	p.Y429C	PTH1R_uc003cqn.2_Missense_Mutation_p.Y429C	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	429	Extracellular (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						GCCACACCATACACCGAGGTC	0.602									Ollier_disease_/_Maffuci_syndrome			
SETD2	29072	broad.mit.edu	37	3	47147559	47147559	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:47147559A>G	uc003cqs.2	-	6	4820	c.4767T>C	c.(4765-4767)TTT>TTC	p.F1589F	SETD2_uc003cqv.2_Silent_p.F1578F	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1589	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		CTCGAGCTTTAAACTCTTTAT	0.408			N|F|S|Mis		clear cell renal carcinoma							
KIF9	64147	broad.mit.edu	37	3	47282448	47282448	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:47282448A>G	uc010hjp.2	-	18	2371	c.1767T>C	c.(1765-1767)GGT>GGC	p.G589G	KIF9_uc003cqx.2_Silent_p.G589G|KIF9_uc003cqy.2_Silent_p.G524G|KIF9_uc011bat.1_RNA|uc003cqw.1_Intron	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	589					blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		TGATCTCACTACCTTGCTCAT	0.483												
KIF9	64147	broad.mit.edu	37	3	47318859	47318859	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:47318859A>G	uc010hjp.2	-	3	610	c.6T>C	c.(4-6)GGT>GGC	p.G2G	KIF9_uc003cqx.2_Silent_p.G2G|KIF9_uc003cqy.2_Silent_p.G2G|KIF9_uc011bat.1_RNA|KIF9_uc011bau.1_RNA|KIF9_uc003cra.3_RNA	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	2	Kinesin-motor.				blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		TTTTCCTAGTACCCATTCTAG	0.373												
PTPN23	25930	broad.mit.edu	37	3	47450682	47450682	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:47450682C>T	uc003crf.1	+	17	1768	c.1672C>T	c.(1672-1674)CGC>TGC	p.R558C	PTPN23_uc011baw.1_Missense_Mutation_p.R523C|PTPN23_uc011bax.1_RNA|PTPN23_uc011bay.1_Missense_Mutation_p.R428C	NM_015466	NP_056281	Q9H3S7	PTN23_HUMAN	protein tyrosine phosphatase, non-receptor type	558	Potential.				cilium morphogenesis	cilium|cytoplasmic membrane-bounded vesicle|microtubule basal body	protein tyrosine phosphatase activity			breast(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000271)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AAACCTAAAGCGCATCCTGGC	0.607												
SCAP	22937	broad.mit.edu	37	3	47470135	47470135	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:47470135A>G	uc003crh.1	-	4	533	c.278T>C	c.(277-279)GTC>GCC	p.V93A	SCAP_uc011baz.1_Intron|SCAP_uc003crg.2_Intron	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	93	Lumenal (By similarity).				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		TATCTGCTGGACATAAGCCAC	0.512												
SMARCC1	6599	broad.mit.edu	37	3	47651722	47651722	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:47651722T>C	uc003crq.2	-	26	2995	c.2877A>G	c.(2875-2877)GAA>GAG	p.E959E	SMARCC1_uc011bbc.1_RNA|SMARCC1_uc011bbd.1_Silent_p.E850E	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	959					chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		GCTGCTGCTGTTCCATTTGCT	0.552												
SMARCC1	6599	broad.mit.edu	37	3	47747936	47747936	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:47747936T>C	uc003crq.2	-	10	1121	c.1003A>G	c.(1003-1005)ACA>GCA	p.T335A	SMARCC1_uc011bbd.1_Missense_Mutation_p.T226A	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	335	Poly-Pro.				chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		TCTGTTGGTGTCGGAGGGGGA	0.378												
DHX30	22907	broad.mit.edu	37	3	47887884	47887884	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:47887884A>G	uc003cru.2	+	11	1748	c.1322A>G	c.(1321-1323)GAC>GGC	p.D441G	DHX30_uc003crt.2_Missense_Mutation_p.D402G	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	441						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		CCACATCGGGACACCATCCTC	0.662												
DHX30	22907	broad.mit.edu	37	3	47889727	47889727	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:47889727C>T	uc003cru.2	+	15	2770	c.2344C>T	c.(2344-2346)CGG>TGG	p.R782W	DHX30_uc003crt.2_Missense_Mutation_p.R743W|MIR1226_hsa-mir-1226|MI0006313_5'Flank	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	782	Helicase C-terminal.					mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		gcgccggggccgggcgggccg	0.498												
COL7A1	1294	broad.mit.edu	37	3	48604159	48604159	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:48604159A>G	uc003ctz.2	-	111	8239	c.8238T>C	c.(8236-8238)GGT>GGC	p.G2746G	UCN2_uc003cty.1_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2746	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CTCCGGGGGGACCTCGCTCAC	0.642												
COL7A1	1294	broad.mit.edu	37	3	48630051	48630051	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:48630051G>T	uc003ctz.2	-	7	929	c.928C>A	c.(928-930)CTC>ATC	p.L310I		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	310	Nonhelical region (NC1).|Fibronectin type-III 1.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TTGGCGTAGAGGGCAATCACA	0.632												
CELSR3	1951	broad.mit.edu	37	3	48691211	48691211	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:48691211A>G	uc003cul.2	-	9	5570	c.5289T>C	c.(5287-5289)CAT>CAC	p.H1763H	CELSR3_uc003cuf.1_Silent_p.H1833H|CELSR3_uc010hkg.2_5'Flank	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1763	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		AATGGTGGGGATGGGCCATAG	0.587												
CELSR3	1951	broad.mit.edu	37	3	48696568	48696568	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:48696568G>T	uc003cul.2	-	1	3781	c.3500C>A	c.(3499-3501)CCT>CAT	p.P1167H	CELSR3_uc003cuf.1_Missense_Mutation_p.P1237H	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1167	Extracellular (Potential).|Cadherin 8.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GTTGAGCACAGGGCTGTTGTC	0.547												
LAMB2	3913	broad.mit.edu	37	3	49161917	49161917	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:49161917C>T	uc003cwe.2	-	22	3537	c.3238G>A	c.(3238-3240)GCC>ACC	p.A1080T	LAMB2_uc003cwf.1_Missense_Mutation_p.A1080T	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	1080	Laminin EGF-like 11.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AAGTTGGGGGCACAGCGGTCA	0.647												
CCDC36	339834	broad.mit.edu	37	3	49249252	49249252	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:49249252T>C	uc003cwk.2	+	4	426	c.39T>C	c.(37-39)AGT>AGC	p.S13S	CCDC36_uc003cwl.3_Silent_p.S13S|CCDC36_uc011bck.1_Silent_p.S13S|CCDC36_uc010hkt.2_RNA	NM_178173	NP_835467	Q8IYA8	CCD36_HUMAN	coiled-coil domain containing 36	13										ovary(1)|kidney(1)	2				BRCA - Breast invasive adenocarcinoma(193;9.11e-05)|Kidney(197;0.00248)|KIRC - Kidney renal clear cell carcinoma(197;0.00262)		AGATGCTCAGTATTCCTTCAG	0.239												
BSN	8927	broad.mit.edu	37	3	49688405	49688405	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:49688405A>G	uc003cxe.3	+	4	1993	c.1879A>G	c.(1879-1881)ACC>GCC	p.T627A		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	627					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TCCAGAGACTACCCCAACCCC	0.597												
BSN	8927	broad.mit.edu	37	3	49695210	49695210	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:49695210A>G	uc003cxe.3	+	5	8335	c.8221A>G	c.(8221-8223)AGC>GGC	p.S2741G		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2741					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AACTGCCATCAGCCCCTACCT	0.632												
BSN	8927	broad.mit.edu	37	3	49700635	49700635	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:49700635C>T	uc003cxe.3	+	7	11158	c.11044C>T	c.(11044-11046)CAC>TAC	p.H3682Y		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3682					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGCCCGGCCCCACTCTCAGCC	0.657												
BSN	8927	broad.mit.edu	37	3	49701969	49701969	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:49701969G>T	uc003cxe.3	+	9	11836	c.11722G>T	c.(11722-11724)GCT>TCT	p.A3908S		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3908					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AGCCGAGCAAGCTGGCAAACT	0.632												
RNF123	63891	broad.mit.edu	37	3	49737143	49737143	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:49737143C>T	uc003cxh.2	+	12	1008	c.922C>T	c.(922-924)CGG>TGG	p.R308W	RNF123_uc010hky.1_5'UTR|RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	308						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		GTGGCGGTTGCGGGGCCAGCC	0.657												
MST1R	4486	broad.mit.edu	37	3	49936349	49936349	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:49936349C>T	uc003cxy.3	-	3	1763	c.1499G>A	c.(1498-1500)CGG>CAG	p.R500Q	MST1R_uc011bdd.1_Missense_Mutation_p.R500Q|MST1R_uc011bde.1_Missense_Mutation_p.R500Q|MST1R_uc011bdf.1_Intron|MST1R_uc011bdc.1_5'Flank	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	500	Extracellular (Potential).|Sema.				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		ACTGACATCCCGCTGCACGGG	0.597												
GNAT1	2779	broad.mit.edu	37	3	50231251	50231251	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:50231251G>A	uc003cym.2	+	5	631	c.515G>A	c.(514-516)CGC>CAC	p.R172H	GNAT1_uc003cyl.2_Missense_Mutation_p.R172H	NM_144499	NP_653082	P11488	GNAT1_HUMAN	rod-type transducin alpha subunit	172	GTP (By similarity).				detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|negative regulation of cyclic-nucleotide phosphodiesterase activity|rhodopsin mediated phototransduction|sensory perception of umami taste	heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment membrane	acyl binding|G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GDP binding|GTP binding|GTPase activity|protein kinase binding|signal transducer activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		GACGTGCTGCGCTCGCGAGTC	0.652												
IFRD2	7866	broad.mit.edu	37	3	50326260	50326260	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:50326260T>C	uc011bdp.1	-	9	1315	c.1186A>G	c.(1186-1188)ACT>GCT	p.T396A	IFRD2_uc003czb.2_Missense_Mutation_p.T498A	NM_006764	NP_006755	Q12894	IFRD2_HUMAN	interferon-related developmental regulator 2	396							binding			lung(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		GCGCGGAAAGTAGAGCGCTGG	0.592												
HYAL1	3373	broad.mit.edu	37	3	50338063	50338063	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:50338063A>G	uc003czp.2	-	4	1291	c.1159T>C	c.(1159-1161)TTC>CTC	p.F387L	HYAL3_uc003czc.1_5'Flank|HYAL3_uc003czd.1_5'Flank|HYAL3_uc003cze.1_5'Flank|HYAL3_uc003czf.1_5'Flank|HYAL3_uc003czg.1_5'Flank|NAT6_uc003czi.2_5'Flank|NAT6_uc003czj.2_5'Flank|NAT6_uc003czk.3_5'Flank|NAT6_uc003czl.1_5'Flank|HYAL1_uc003czm.2_Missense_Mutation_p.F205L|HYAL1_uc003czo.2_Missense_Mutation_p.F128L|HYAL1_uc003czq.2_Missense_Mutation_p.F357L|HYAL1_uc003czr.2_Missense_Mutation_p.F387L|HYAL1_uc003czn.2_Missense_Mutation_p.F48L|HYAL1_uc003czs.2_Missense_Mutation_p.F387L|HYAL1_uc003czt.2_3'UTR	NM_033159	NP_149349	Q12794	HYAL1_HUMAN	hyaluronoglucosaminidase 1 isoform 1	387	EGF-like.					extracellular space|lysosome	hyalurononglucosaminidase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)	Hyaluronidase(DB00070)	TGGATGGAGAAACTGGCAGGG	0.632												
HYAL2	8692	broad.mit.edu	37	3	50357862	50357862	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:50357862G>A	uc003czu.2	-	2	279	c.59C>T	c.(58-60)GCC>GTC	p.A20V	HYAL2_uc003czx.2_Missense_Mutation_p.A20V|HYAL2_uc003czv.2_Missense_Mutation_p.A20V|HYAL2_uc003czw.2_Missense_Mutation_p.A20V|HYAL2_uc010hlj.2_Missense_Mutation_p.A20V	NM_033158	NP_149348	Q12891	HYAL2_HUMAN	hyaluronoglucosaminidase 2 precursor	20						anchored to membrane|lysosome|plasma membrane	hyalurononglucosaminidase activity|receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)	Hyaluronidase(DB00070)	GAGCTCCATGGCCCATGACAC	0.667												
CACNA2D2	9254	broad.mit.edu	37	3	50416569	50416569	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:50416569T>C	uc003daq.2	-	12	1252	c.1214A>G	c.(1213-1215)GAC>GGC	p.D405G	CACNA2D2_uc003dap.2_Missense_Mutation_p.D405G	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	405	VWFA.|Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	CTGCACGCGGTCCTCACCACC	0.592												
RBM15B	29890	broad.mit.edu	37	3	51430017	51430017	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:51430017C>T	uc003dbd.2	+	1	1287	c.1187C>T	c.(1186-1188)GCC>GTC	p.A396V		NM_013286	NP_037418	Q8NDT2	RB15B_HUMAN	RNA binding motif protein 15B	396	RRM 2.				interspecies interaction between organisms|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nucleoplasm	nucleotide binding|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000224)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		GCTAAGGTGGCCATGTCGGGC	0.607												
TLR9	54106	broad.mit.edu	37	3	52256132	52256132	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52256132C>T	uc003dda.1	-	2	2834	c.2200G>A	c.(2200-2202)GCC>ACC	p.A734T	TLR9_uc003ddb.2_Missense_Mutation_p.A831T	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	734	LRR 25.|Extracellular (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	AGGGCGTTGGCGCTAAGGTTG	0.617												
TLR9	54106	broad.mit.edu	37	3	52257592	52257592	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52257592C>T	uc003dda.1	-	2	1374	c.740G>A	c.(739-741)CGT>CAT	p.R247H	TLR9_uc003ddb.2_Missense_Mutation_p.R344H	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	247	LRR 8.|Extracellular (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	ATCGAGCACACGCAGGGCGGT	0.627												
TLR9	54106	broad.mit.edu	37	3	52258032	52258032	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52258032C>T	uc003dda.1	-	2	934	c.300G>A	c.(298-300)CCG>CCA	p.P100P	TLR9_uc003ddb.2_Silent_p.P197P|TLR9_uc003ddc.1_Silent_p.P85P	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	100	LRR 2.|Extracellular (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	TGAGGCCAACCGGCGGGCAGT	0.597												
TWF2	11344	broad.mit.edu	37	3	52265209	52265209	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52265209C>T	uc003ddd.2	-	5	568	c.417G>A	c.(415-417)TCG>TCA	p.S139S	TLR9_uc003ddb.2_5'UTR|TLR9_uc003ddc.1_5'Flank|TWF2_uc010hmc.2_Silent_p.S139S	NM_007284	NP_009215	Q6IBS0	TWF2_HUMAN	twinfilin-like protein	139	ADF-H 1.					cytoskeleton|perinuclear region of cytoplasm	actin binding|ATP binding			stomach(1)|ovary(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;2.43e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CCGCACAGGACGACAGGTGTT	0.622												
BAP1	8314	broad.mit.edu	37	3	52439911	52439911	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52439911C>T	uc003ddx.2	-	10	916	c.801G>A	c.(799-801)CAG>CAA	p.Q267Q	BAP1_uc003ddw.2_5'Flank|BAP1_uc010hmg.2_5'Flank|BAP1_uc010hmh.2_5'Flank	NM_004656	NP_004647	Q92560	BAP1_HUMAN	BRCA1 associated protein-1	267					monoubiquitinated histone H2A deubiquitination|negative regulation of cell proliferation|protein K48-linked deubiquitination|regulation of cell cycle|regulation of cell growth|ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|PR-DUB complex	chromatin binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			pleura(32)|eye(28)|lung(2)|ovary(2)|breast(1)	65				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)		TCAGCTCTGGCTGTGTTACTC	0.527			N|Mis|F|S|O		uveal melanoma|breast|NSCLC							
SEMA3G	56920	broad.mit.edu	37	3	52469661	52469661	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52469661A>G	uc003dea.1	-	16	2307	c.2307T>C	c.(2305-2307)CAT>CAC	p.H769H		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	769					multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		TGTGCTCGGCATGCACCCGGC	0.687												
SEMA3G	56920	broad.mit.edu	37	3	52475363	52475363	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52475363A>G	uc003dea.1	-	7	730	c.730T>C	c.(730-732)TAC>CAC	p.Y244H		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	244	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		AAGAAGAAGTACACCTTGTCA	0.632												
TNNC1	7134	broad.mit.edu	37	3	52485421	52485421	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52485421C>T	uc003deb.2	-	5	466	c.440G>A	c.(439-441)CGC>CAC	p.R147H		NM_003280	NP_003271	P63316	TNNC1_HUMAN	troponin C, slow	147	3.|EF-hand 4.				cardiac muscle contraction|muscle filament sliding|regulation of ATPase activity|regulation of muscle filament sliding speed|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin filament binding|calcium ion binding|calcium-dependent protein binding|protein homodimerization activity|troponin I binding|troponin T binding				0				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00175)|KIRC - Kidney renal clear cell carcinoma(197;0.00198)|OV - Ovarian serous cystadenocarcinoma(275;0.0525)	Bepridil(DB01244)|Dihydroxyaluminium(DB01375)|Levosimendan(DB00922)	ATAGTCGATGCGGCCGTCGTT	0.592												
NT5DC2	64943	broad.mit.edu	37	3	52563198	52563198	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52563198T>C	uc003deo.2	-	2	698	c.274A>G	c.(274-276)ACC>GCC	p.T92A	NT5DC2_uc003dem.2_5'Flank|NT5DC2_uc003den.2_Missense_Mutation_p.T129A|NT5DC2_uc010hmi.2_Missense_Mutation_p.T129A|NT5DC2_uc010hmj.2_5'UTR	NM_022908	NP_075059	Q9H857	NT5D2_HUMAN	5'-nucleotidase domain containing 2 isoform 2	92							hydrolase activity|metal ion binding				0				BRCA - Breast invasive adenocarcinoma(193;1.7e-05)|Kidney(197;0.00177)|KIRC - Kidney renal clear cell carcinoma(197;0.002)|OV - Ovarian serous cystadenocarcinoma(275;0.0476)		TCACGGGCGGTACTGAAGATC	0.587												
PBRM1	55193	broad.mit.edu	37	3	52637747	52637747	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52637747T>C	uc003des.2	-	17	2581	c.2569A>G	c.(2569-2571)ACA>GCA	p.T857A	PBRM1_uc003dex.2_Intron|PBRM1_uc003deq.2_Missense_Mutation_p.T857A|PBRM1_uc003der.2_Missense_Mutation_p.T825A|PBRM1_uc003det.2_Missense_Mutation_p.T872A|PBRM1_uc003deu.2_Missense_Mutation_p.T872A|PBRM1_uc003dev.2_Intron|PBRM1_uc003dew.2_Missense_Mutation_p.T857A|PBRM1_uc010hmk.1_Missense_Mutation_p.T857A|PBRM1_uc003dey.2_Missense_Mutation_p.T857A|PBRM1_uc003dez.1_Missense_Mutation_p.T857A|PBRM1_uc003dfb.1_Missense_Mutation_p.T770A|PBRM1_uc003dfa.1_Missense_Mutation_p.T203A	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	857	Bromo 6.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		TCTGAATCTGTCCTATAACAG	0.308			Mis|N|F|S|D|O		clear cell renal carcinoma|breast							
NEK4	6787	broad.mit.edu	37	3	52777458	52777458	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52777458C>T	uc003dfq.3	-	12	2103	c.1914G>A	c.(1912-1914)GCG>GCA	p.A638A	NEK4_uc011bej.1_Silent_p.A549A|NEK4_uc003dfr.2_Silent_p.A592A	NM_003157	NP_003148	P51957	NEK4_HUMAN	NIMA-related kinase 4	638					cell division|mitosis	nucleus	ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;7.44e-05)|Kidney(197;0.000711)|KIRC - Kidney renal clear cell carcinoma(197;0.00086)|OV - Ovarian serous cystadenocarcinoma(275;0.0513)		CACTCAGAGACGCTTTCCTCA	0.542												
ITIH1	3697	broad.mit.edu	37	3	52823759	52823759	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52823759A>G	uc003dfs.2	+	19	2234	c.2210A>G	c.(2209-2211)AAC>AGC	p.N737S	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Missense_Mutation_p.N338S|ITIH1_uc010hmo.1_Missense_Mutation_p.N291S|ITIH1_uc003dfu.2_Missense_Mutation_p.N103S	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	737	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		GGAATCGCAAACCCTGCCACG	0.577												
CACNA1D	776	broad.mit.edu	37	3	53694220	53694220	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:53694220C>T	uc003dgv.3	+	5	847	c.684C>T	c.(682-684)AGC>AGT	p.S228S	CACNA1D_uc003dgu.3_Silent_p.S228S|CACNA1D_uc003dgy.3_Silent_p.S228S	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	228	Extracellular (Potential).|I.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	ACCACTCAAGCGGCAAATCTG	0.433												
CACNA1D	776	broad.mit.edu	37	3	53844236	53844236	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:53844236A>G	uc003dgv.3	+	47	6266	c.6103A>G	c.(6103-6105)ACT>GCT	p.T2035A	CACNA1D_uc003dgu.3_Missense_Mutation_p.T2055A|CACNA1D_uc003dgy.3_Missense_Mutation_p.T2011A|CACNA1D_uc003dgw.3_Missense_Mutation_p.T1702A|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	2035	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	CTCCTACCGGACTTTCACACC	0.617												
CHDH	55349	broad.mit.edu	37	3	53851805	53851805	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:53851805T>C	uc003dgz.2	-	9	2224	c.1784A>G	c.(1783-1785)TAA>TGA	p.*595*		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	595					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	GCAACTGTCTTAGCGCTGGGT	0.582												
CHDH	55349	broad.mit.edu	37	3	53856520	53856520	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:53856520T>C	uc003dgz.2	-	4	1293	c.853A>G	c.(853-855)AGG>GGG	p.R285G		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	285					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	CCACTCACCCTGTGGCTCTGG	0.637												
CACNA2D3	55799	broad.mit.edu	37	3	54661852	54661852	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:54661852A>G	uc003dhf.2	+	10	1050	c.1002A>G	c.(1000-1002)GGA>GGG	p.G334G	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.G240G|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.G68G	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	334	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TCGCCAAAGGAATTGGAATGT	0.423												
CACNA2D3	55799	broad.mit.edu	37	3	54919520	54919520	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:54919520T>C	uc003dhf.2	+	23	2011	c.1963T>C	c.(1963-1965)TAC>CAC	p.Y655H	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.Y561H|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.Y389H|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	655	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TCTTAGGTCCTACTGCAACAC	0.473												
LRTM1	57408	broad.mit.edu	37	3	54959015	54959015	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:54959015A>G	uc003dhl.2	-	2	369	c.235T>C	c.(235-237)TTA>CTA	p.L79L	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	79	Extracellular (Potential).|LRR 2.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		GACAAGTTTAAGGTCATGAGC	0.443												
WNT5A	7474	broad.mit.edu	37	3	55513396	55513396	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:55513396A>G	uc003dhn.2	-	3	655	c.337T>C	c.(337-339)TGG>CGG	p.W113R	WNT5A_uc003dhm.2_Missense_Mutation_p.W98R|WNT5A_uc010hmw.2_Missense_Mutation_p.W98R|WNT5A_uc010hmx.2_Missense_Mutation_p.W24R	NM_003392	NP_003383	P41221	WNT5A_HUMAN	wingless-type MMTV integration site family,	113					activation of JUN kinase activity|activation of protein kinase B activity|axon guidance|cartilage development|cellular protein localization|cellular response to calcium ion|cellular response to interferon-gamma|cellular response to lipopolysaccharide|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|cervix development|cochlea morphogenesis|convergent extension involved in organogenesis|dopaminergic neuron differentiation|dorsal/ventral axis specification|embryonic digit morphogenesis|embryonic skeletal system development|epithelial cell proliferation involved in mammary gland duct elongation|epithelial to mesenchymal transition|face development|genitalia development|heart looping|hemopoietic stem cell proliferation|keratinocyte differentiation|lateral sprouting involved in mammary gland duct morphogenesis|lens development in camera-type eye|male gonad development|mammary gland branching involved in thelarche|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of mesenchymal cell proliferation|negative regulation of transcription, DNA-dependent|neural tube closure|olfactory bulb interneuron development|optic cup formation involved in camera-type eye development|palate development|positive regulation of angiogenesis|positive regulation of cartilage development|positive regulation of cGMP metabolic process|positive regulation of chemokine biosynthetic process|positive regulation of cytokine secretion involved in immune response|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of macrophage activation|positive regulation of macrophage cytokine production|positive regulation of mesenchymal cell proliferation|positive regulation of neuron projection development|positive regulation of NF-kappaB transcription factor activity|positive regulation of ossification|positive regulation of protein catabolic process|positive regulation of protein kinase C signaling cascade|positive regulation of T cell chemotaxis|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|primitive streak formation|regulation of branching involved in mammary gland duct morphogenesis|somitogenesis|tail morphogenesis|type B pancreatic cell development|urinary bladder development|uterus development|vagina development|Wnt receptor signaling pathway, calcium modulating pathway|wound healing	extracellular space|membrane fraction|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|receptor tyrosine kinase-like orphan receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.00377)|Kidney(284;0.00408)|OV - Ovarian serous cystadenocarcinoma(275;0.204)		CTGCAGTTCCACCTTCGATGT	0.413												
C3orf63	23272	broad.mit.edu	37	3	56681185	56681185	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:56681185A>G	uc003did.3	-	14	1681	c.1580T>C	c.(1579-1581)ATA>ACA	p.I527T	C3orf63_uc003dic.3_Missense_Mutation_p.I131T|C3orf63_uc003die.3_Missense_Mutation_p.I527T	NM_015224	NP_056039	Q9UK61	CC063_HUMAN	retinoblastoma-associated protein 140 isoform b	527										ovary(3)|kidney(1)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.0126)|Kidney(284;0.0147)		AAACTGAGCTATTTTTAATAC	0.333												
APPL1	26060	broad.mit.edu	37	3	57294173	57294173	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:57294173A>G	uc003dio.2	+	18	1834	c.1687A>G	c.(1687-1689)AGG>GGG	p.R563G	APPL1_uc010hnb.2_Missense_Mutation_p.R563G|APPL1_uc011bey.1_Missense_Mutation_p.R546G	NM_012096	NP_036228	Q9UKG1	DP13A_HUMAN	adaptor protein, phosphotyrosine interaction, PH	563	PID.				apoptosis|cell cycle|cell proliferation|insulin receptor signaling pathway|regulation of apoptosis|regulation of establishment of protein localization in plasma membrane|regulation of glucose import	cytosol|early endosome membrane|microsome|nucleus|vesicle membrane	protein kinase B binding			breast(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0124)|Kidney(284;0.0144)		ACAAGTTACAAGGCTCACGGT	0.294												
FLNB	2317	broad.mit.edu	37	3	58110079	58110079	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:58110079A>G	uc003djj.2	+	22	3910	c.3745A>G	c.(3745-3747)ACC>GCC	p.T1249A	FLNB_uc010hne.2_Missense_Mutation_p.T1249A|FLNB_uc003djk.2_Missense_Mutation_p.T1249A|FLNB_uc010hnf.2_Missense_Mutation_p.T1249A|FLNB_uc003djl.2_Missense_Mutation_p.T1080A|FLNB_uc003djm.2_Missense_Mutation_p.T1080A	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1249	Filamin 11.|Interaction with FBLP1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GGAAGCTACCACCGACTTTAC	0.572												
FLNB	2317	broad.mit.edu	37	3	58131754	58131754	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:58131754C>T	uc003djj.2	+	33	5697	c.5532C>T	c.(5530-5532)ATC>ATT	p.I1844I	FLNB_uc010hne.2_Silent_p.I1875I|FLNB_uc003djk.2_Silent_p.I1833I|FLNB_uc010hnf.2_Silent_p.I1820I|FLNB_uc003djl.2_Silent_p.I1664I|FLNB_uc003djm.2_Silent_p.I1651I	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1844	Filamin 17.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCTTCACCATCGTCACAGAGG	0.527												
ABHD6	57406	broad.mit.edu	37	3	58260523	58260523	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:58260523G>A	uc003djs.3	+	6	1072	c.662G>A	c.(661-663)CGC>CAC	p.R221H	ABHD6_uc003djr.2_Missense_Mutation_p.R221H|ABHD6_uc003djt.3_Missense_Mutation_p.R221H	NM_020676	NP_065727	Q9BV23	ABHD6_HUMAN	abhydrolase domain containing 6	221	Cytoplasmic (Potential).					integral to membrane	acylglycerol lipase activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(55;0.000225)|KIRC - Kidney renal clear cell carcinoma(284;0.0471)|Kidney(284;0.0589)|OV - Ovarian serous cystadenocarcinoma(275;0.209)		TCCTATGTCCGCTTCAAGGTG	0.587												
C3orf67	200844	broad.mit.edu	37	3	58870331	58870331	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:58870331T>C	uc003dkt.1	-	7	689	c.280A>G	c.(280-282)ACT>GCT	p.T94A	uc003dku.1_Intron|C3orf67_uc003dkv.1_5'UTR|C3orf67_uc003dkw.2_Missense_Mutation_p.T2A	NM_198463	NP_940865	Q6ZVT6	CC067_HUMAN	hypothetical protein LOC200844	94											0		all_cancers(2;0.000156)|all_epithelial(2;0.000493)|Breast(2;0.00446)|all_lung(2;0.074)|Lung NSC(2;0.248)		BRCA - Breast invasive adenocarcinoma(55;5.93e-06)|Kidney(10;0.00155)|KIRC - Kidney renal clear cell carcinoma(10;0.00172)|OV - Ovarian serous cystadenocarcinoma(275;0.23)		CGAAGTTTAGTCATGTTTAGC	0.373												
PTPRG	5793	broad.mit.edu	37	3	61975397	61975397	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:61975397G>A	uc003dlb.2	+	3	1008	c.289G>A	c.(289-291)GAA>AAA	p.E97K	PTPRG_uc003dlc.2_Missense_Mutation_p.E97K	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	97	Extracellular (Potential).|Alpha-carbonic anhydrase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		GCGTGTTGGGGAAGAATACCA	0.488												
CADPS	8618	broad.mit.edu	37	3	62452032	62452032	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:62452032T>A	uc003dll.2	-	25	3894	c.3534A>T	c.(3532-3534)ATA>ATT	p.I1178I	CADPS_uc003dlj.1_Silent_p.I133I|CADPS_uc003dlk.1_Silent_p.I626I|CADPS_uc003dlm.2_Silent_p.I1139I|CADPS_uc003dln.2_Silent_p.I1099I	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1178	Mediates targeting and association with DCVs (By similarity).				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		CCAAGAGTGTTATCATTTCTT	0.338												
THOC7	80145	broad.mit.edu	37	3	63824156	63824156	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:63824156T>C	uc003dlt.3	-	3	288	c.157A>G	c.(157-159)ATG>GTG	p.M53V	C3orf49_uc003dls.3_Intron|THOC7_uc003dlu.3_5'UTR	NM_025075	NP_079351	Q6I9Y2	THOC7_HUMAN	Ngg1 interacting factor 3 like 1 binding protein	53	Interaction with THOC5.				intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	cytoplasm|THO complex part of transcription export complex	protein binding|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.000439)|Kidney(15;0.00194)|KIRC - Kidney renal clear cell carcinoma(15;0.00218)		GTGCTCAGCATACGTTGGTAC	0.303												
ATXN7	6314	broad.mit.edu	37	3	63898589	63898589	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:63898589T>C	uc003dlw.3	+	3	868	c.315T>C	c.(313-315)CCT>CCC	p.P105P	ATXN7_uc003dlv.2_Silent_p.P105P|ATXN7_uc010hnv.2_Silent_p.P105P|ATXN7_uc010hnu.1_RNA	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	105				P -> H (in Ref. 2; AAC19162).	cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		CCAAACTTCCTGGGAAGGACG	0.537												
ATXN7	6314	broad.mit.edu	37	3	63976414	63976414	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:63976414T>C	uc003dlw.3	+	11	2114	c.1561T>C	c.(1561-1563)TTT>CTT	p.F521L	ATXN7_uc003dlv.2_Missense_Mutation_p.F521L|ATXN7_uc010hnv.2_Missense_Mutation_p.F521L|ATXN7_uc011bfn.1_Missense_Mutation_p.F376L	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	521					cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		TCTCTTGCAGTTTTGCACATT	0.522												
PRICKLE2	166336	broad.mit.edu	37	3	64085149	64085149	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:64085149G>A	uc003dmf.2	-	8	2699	c.2113C>T	c.(2113-2115)CGC>TGC	p.R705C		NM_198859	NP_942559	Q7Z3G6	PRIC2_HUMAN	prickle-like 2	705	Arg-rich.					cytoplasm|nuclear membrane	zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000971)|KIRC - Kidney renal clear cell carcinoma(15;0.00443)|Kidney(15;0.00497)		ATGGCCTCGCGTTCGCTGGCC	0.617												
ADAMTS9	56999	broad.mit.edu	37	3	64547309	64547309	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:64547309T>C	uc003dmg.2	-	30	4675	c.4643A>G	c.(4642-4644)GAC>GGC	p.D1548G	ADAMTS9_uc011bfo.1_Missense_Mutation_p.D1520G|ADAMTS9_uc003dmh.1_Missense_Mutation_p.D1377G|ADAMTS9_uc011bfp.1_Missense_Mutation_p.D459G|uc003dmi.1_5'Flank	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1548	TSP type-1 12.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		GCCTTGGCAGTCGCGTTCCGA	0.572												
ADAMTS9	56999	broad.mit.edu	37	3	64582593	64582593	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:64582593G>A	uc003dmg.2	-	27	4124	c.4092C>T	c.(4090-4092)AAC>AAT	p.N1364N	ADAMTS9_uc011bfo.1_Silent_p.N1336N|ADAMTS9_uc003dmh.1_Silent_p.N1193N|ADAMTS9_uc011bfp.1_Silent_p.N275N	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1364	TSP type-1 9.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CCACACAGTCGTTTGCGGTGT	0.498												
ADAMTS9	56999	broad.mit.edu	37	3	64619438	64619438	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:64619438G>A	uc003dmg.2	-	13	2006	c.1974C>T	c.(1972-1974)GAC>GAT	p.D658D	ADAMTS9_uc011bfo.1_Silent_p.D630D|ADAMTS9_uc003dmh.1_Silent_p.D487D|ADAMTS9_uc003dmk.1_Silent_p.D658D	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	658	Cys-rich.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		AATGCTTCCCGTCAAAGTGAG	0.478												
ADAMTS9	56999	broad.mit.edu	37	3	64636769	64636769	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:64636769C>T	uc003dmg.2	-	9	1419	c.1387G>A	c.(1387-1389)GCT>ACT	p.A463T	ADAMTS9_uc011bfo.1_Missense_Mutation_p.A435T|ADAMTS9_uc003dmh.1_Missense_Mutation_p.A292T|ADAMTS9_uc003dmk.1_Missense_Mutation_p.A463T	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	463	Peptidase M12B.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		AGTGTTGGAGCCATGACATGC	0.393												
LRIG1	26018	broad.mit.edu	37	3	66463397	66463397	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:66463397G>T	uc003dmx.2	-	6	703	c.689C>A	c.(688-690)ACC>AAC	p.T230N	LRIG1_uc010hnz.2_5'UTR|LRIG1_uc010hoa.2_Missense_Mutation_p.T230N	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	230	Extracellular (Potential).|LRR 7.					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		CCCCTGGAAGGTGAGGCCCTC	0.532												
FAM19A4	151647	broad.mit.edu	37	3	68929977	68929977	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:68929977A>G	uc003dnh.1	-	3	477	c.34T>C	c.(34-36)TCA>CCA	p.S12P	FAM19A4_uc003dni.1_Missense_Mutation_p.S12P	NM_182522	NP_872328	Q96LR4	F19A4_HUMAN	family with sequence similarity 19 (chemokine	12						extracellular region				skin(2)	2		Lung NSC(201;0.0198)		BRCA - Breast invasive adenocarcinoma(55;1.38e-05)|Epithelial(33;0.000124)|LUSC - Lung squamous cell carcinoma(21;0.0248)|KIRC - Kidney renal clear cell carcinoma(39;0.0729)|Kidney(39;0.0904)		AGCAACACTGACTTAGCACAG	0.562												
FOXP1	27086	broad.mit.edu	37	3	71096154	71096154	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:71096154G>A	uc003dol.2	-	6	926	c.603C>T	c.(601-603)CGC>CGT	p.R201R	FOXP1_uc003dom.2_Silent_p.R125R|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Silent_p.R201R|FOXP1_uc003dop.2_Silent_p.R201R|FOXP1_uc003doq.1_Silent_p.R200R|FOXP1_uc003doi.2_Silent_p.R101R|FOXP1_uc003doj.2_Silent_p.R101R|FOXP1_uc003dok.2_Silent_p.R14R	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	201	Gln-rich.				cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		GAAGGCCTTGGCGCTGCAAAG	0.527			T	PAX5	ALL							
FOXP1	27086	broad.mit.edu	37	3	71247404	71247404	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:71247404G>A	uc003dol.2	-	2	452	c.129C>T	c.(127-129)GCC>GCT	p.A43A	FOXP1_uc003dom.2_Silent_p.A43A|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Silent_p.A43A|FOXP1_uc003dop.2_Silent_p.A43A|FOXP1_uc003doq.1_Silent_p.A43A|FOXP1_uc003dos.2_Silent_p.A43A	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	43					cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		CGATGTCCACGGCCGGCGTCT	0.627			T	PAX5	ALL							
EIF4E3	317649	broad.mit.edu	37	3	71739244	71739244	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:71739244G>A	uc003dov.3	-	6	553	c.545C>T	c.(544-546)GCC>GTC	p.A182V	EIF4E3_uc011bgc.1_Missense_Mutation_p.A76V|EIF4E3_uc003dox.2_Missense_Mutation_p.A76V|EIF4E3_uc011bgd.1_Missense_Mutation_p.A76V|EIF4E3_uc010hoc.2_Missense_Mutation_p.A76V	NM_001134651	NP_001128123	Q8N5X7	IF4E3_HUMAN	eukaryotic translation initiation factor 4E	182					regulation of translation	cytoplasm|mRNA cap binding complex	translation initiation factor activity				0		Prostate(10;0.0166)		BRCA - Breast invasive adenocarcinoma(55;2.56e-05)|Epithelial(33;2.9e-05)|Lung(16;9.28e-05)|LUSC - Lung squamous cell carcinoma(21;0.00227)		CACTAAAGAGGCATTTACATT	0.393												
EIF4E3	317649	broad.mit.edu	37	3	71748797	71748797	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:71748797A>G	uc003dov.3	-	3	320	c.312T>C	c.(310-312)TAT>TAC	p.Y104Y	EIF4E3_uc011bgc.1_5'UTR|EIF4E3_uc003dox.2_5'UTR|EIF4E3_uc011bgd.1_5'UTR|EIF4E3_uc010hoc.2_5'UTR	NM_001134651	NP_001128123	Q8N5X7	IF4E3_HUMAN	eukaryotic translation initiation factor 4E	104					regulation of translation	cytoplasm|mRNA cap binding complex	translation initiation factor activity				0		Prostate(10;0.0166)		BRCA - Breast invasive adenocarcinoma(55;2.56e-05)|Epithelial(33;2.9e-05)|Lung(16;9.28e-05)|LUSC - Lung squamous cell carcinoma(21;0.00227)		TCATTAAATGATAACTACATC	0.358												
PDZRN3	23024	broad.mit.edu	37	3	73433573	73433573	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:73433573T>C	uc003dpl.1	-	10	2240	c.2144A>G	c.(2143-2145)TAC>TGC	p.Y715C	PDZRN3_uc011bgh.1_Missense_Mutation_p.Y372C|PDZRN3_uc010hoe.1_Missense_Mutation_p.Y413C|PDZRN3_uc011bgf.1_Missense_Mutation_p.Y432C|PDZRN3_uc011bgg.1_Missense_Mutation_p.Y435C	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	715							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		GGACTCGCGGTACTGCTCCTT	0.607												
ROBO2	6092	broad.mit.edu	37	3	77617497	77617497	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:77617497G>T	uc003dpy.3	+	13	2526	c.1883G>T	c.(1882-1884)AGG>ATG	p.R628M	ROBO2_uc003dpz.2_Missense_Mutation_p.R632M|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.R632M	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	628	Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		GTGGACCACAGGCAAGTGCAG	0.418												
VGLL3	389136	broad.mit.edu	37	3	87017791	87017791	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:87017791C>T	uc003dqn.2	-	3	1250	c.886G>A	c.(886-888)GGA>AGA	p.G296R		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	296					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		TGAAAGGCTCCAGCCCATGCT	0.478												
EPHA3	2042	broad.mit.edu	37	3	89391170	89391170	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:89391170T>C	uc003dqy.2	+	5	1461	c.1236T>C	c.(1234-1236)GTT>GTC	p.V412V	EPHA3_uc003dqx.1_Silent_p.V412V|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	412	Extracellular (Potential).|Fibronectin type-III 1.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		TTGATGCCGTTAATGGGGTGT	0.498										TSP Lung(6;0.00050)		
PROS1	5627	broad.mit.edu	37	3	93598107	93598107	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:93598107C>T	uc003drb.3	-	13	1885	c.1544G>A	c.(1543-1545)CGT>CAT	p.R515H	PROS1_uc010hoo.2_Missense_Mutation_p.R384H|PROS1_uc003dqz.3_Missense_Mutation_p.R384H	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	515	Laminin G-like 2.		R -> P (in PROS1D).|R -> C (in PROS1D; secretion of the mutant markedly decreased compared with that of the wild-type; intracellular degradation and impaired secretion of the mutant).	R->K: No change in secretion of the mutant.|R->A,E: Markedly reduced secretion of the mutant.	leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	CGTGGATGGACGAATATTCAA	0.438												
PROS1	5627	broad.mit.edu	37	3	93615522	93615522	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:93615522C>T	uc003drb.3	-	9	1204	c.863G>A	c.(862-864)TGC>TAC	p.C288Y	PROS1_uc010hoo.2_Missense_Mutation_p.C157Y|PROS1_uc003dqz.3_Missense_Mutation_p.C157Y	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	288					leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	CAAGGGAAGGCACACTGAAAC	0.358												
ARL13B	200894	broad.mit.edu	37	3	93754252	93754252	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:93754252T>C	uc003drc.2	+	4	744	c.458T>C	c.(457-459)GTC>GCC	p.V153A	ARL13B_uc010hop.2_Intron|ARL13B_uc003drd.2_Missense_Mutation_p.V46A|ARL13B_uc003dre.2_Missense_Mutation_p.V138A|ARL13B_uc003drf.2_Missense_Mutation_p.V153A|ARL13B_uc003drg.2_Missense_Mutation_p.V50A	NM_182896	NP_878899	Q3SXY8	AR13B_HUMAN	ADP-ribosylation factor-like 2-like 1 isoform 1	153							GTP binding				0						GAAAAATTGGTCAATGAGCAC	0.299												
EPHA6	285220	broad.mit.edu	37	3	97439147	97439147	+	Missense_Mutation	SNP	G	G	A	rs36084843		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:97439147G>A	uc010how.1	+	15	2870	c.2827G>A	c.(2827-2829)GCC>ACC	p.A943T	EPHA6_uc003drt.2_Missense_Mutation_p.A335T|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	848	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						AGAAGCCATCGCCTACAGAAA	0.443												
GABRR3	200959	broad.mit.edu	37	3	97711803	97711803	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:97711803A>G	uc011bgr.1	-	8	997	c.997T>C	c.(997-999)TAC>CAC	p.Y333H		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	333	Helical; (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						ACCCACAGGTACACATCCACA	0.517												
OR5H15	403274	broad.mit.edu	37	3	97888382	97888382	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:97888382T>C	uc011bgu.1	+	1	839	c.839T>C	c.(838-840)GTC>GCC	p.V280A		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTCTACACTGTCATCATTCCT	0.373												
GPR15	2838	broad.mit.edu	37	3	98251737	98251737	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:98251737G>A	uc011bgy.1	+	1	860	c.860G>A	c.(859-861)AGT>AAT	p.S287N		NM_005290	NP_005281	P49685	GPR15_HUMAN	G protein-coupled receptor 15	287	Helical; Name=7; (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1		Lung NSC(201;7.93e-06)|all_neural(597;0.00172)|Hepatocellular(537;0.00825)|Myeloproliferative disorder(1037;0.0255)		Lung(72;0.246)		ATGGAGGTGAGTGGACCCTTG	0.502												
SENP7	57337	broad.mit.edu	37	3	101060559	101060559	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:101060559T>C	uc003dut.2	-	15	2282	c.2171A>G	c.(2170-2172)TAC>TGC	p.Y724C	SENP7_uc003duu.2_Missense_Mutation_p.Y659C|SENP7_uc003duv.2_Missense_Mutation_p.Y691C|SENP7_uc003duw.2_Missense_Mutation_p.Y658C|SENP7_uc003dux.2_Missense_Mutation_p.Y560C	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	724					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						AGAAAGGGAGTAGCAACCGCT	0.448												
SENP7	57337	broad.mit.edu	37	3	101083732	101083732	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:101083732A>G	uc003dut.2	-	10	1533	c.1422T>C	c.(1420-1422)AGT>AGC	p.S474S	SENP7_uc003duu.2_Silent_p.S409S|SENP7_uc003duv.2_Silent_p.S441S|SENP7_uc003duw.2_Silent_p.S408S|SENP7_uc003dux.2_Silent_p.S310S	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	474					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						ATTCAGAAGTACTCTCATTTT	0.328												
ZBTB11	27107	broad.mit.edu	37	3	101384247	101384247	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:101384247G>A	uc003dve.3	-	4	1414	c.1184C>T	c.(1183-1185)GCC>GTC	p.A395V		NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	395					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TGATGACAGGGCAGATTCAGC	0.433												
ALCAM	214	broad.mit.edu	37	3	105271332	105271332	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:105271332A>G	uc003dvx.2	+	14	2107	c.1567A>G	c.(1567-1569)AAT>GAT	p.N523D	ALCAM_uc003dvw.1_Missense_Mutation_p.N523D|ALCAM_uc003dvy.2_Missense_Mutation_p.N510D|ALCAM_uc010hpp.2_Missense_Mutation_p.N245D|ALCAM_uc003dvz.2_Missense_Mutation_p.N157D	NM_001627	NP_001618	Q13740	CD166_HUMAN	activated leukocyte cell adhesion molecule	523	Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(2)|breast(1)	3						AGAAAAGGTGAATGACCAGGC	0.413												
CBLB	868	broad.mit.edu	37	3	105400628	105400628	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:105400628T>C	uc003dwc.2	-	15	2558	c.2236A>G	c.(2236-2238)ACA>GCA	p.T746A	CBLB_uc003dwa.2_Missense_Mutation_p.T5A|CBLB_uc011bhi.1_Missense_Mutation_p.T768A|CBLB_uc003dwd.1_Missense_Mutation_p.T746A|CBLB_uc003dwe.1_Missense_Mutation_p.T746A	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	746	Pro-rich.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						GGACCATGTGTTCCATTCAGC	0.333			Mis S		AML							
IFT57	55081	broad.mit.edu	37	3	107938290	107938290	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:107938290T>C	uc003dwx.3	-	2	590	c.342A>G	c.(340-342)ACA>ACG	p.T114T		NM_018010	NP_060480	Q9NWB7	IFT57_HUMAN	estrogen-related receptor beta like 1	114					activation of caspase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cilium|microtubule basal body	DNA binding|protein binding			ovary(1)|skin(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(3;0.0428)|Epithelial(53;0.246)			TGTTAGATATTGTTGCATTAG	0.373												
MYH15	22989	broad.mit.edu	37	3	108147575	108147575	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:108147575T>C	uc003dxa.1	-	28	3583	c.3526A>G	c.(3526-3528)ACT>GCT	p.T1176A		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1176	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TGTTTCTTAGTTATTTCCAGC	0.493												
MYH15	22989	broad.mit.edu	37	3	108224573	108224573	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:108224573T>C	uc003dxa.1	-	3	309	c.252A>G	c.(250-252)GGA>GGG	p.G84G		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	84	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TCTTTACCTCTCCATCTGCTG	0.323												
KIAA1524	57650	broad.mit.edu	37	3	108282076	108282076	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:108282076T>C	uc003dxb.3	-	13	1800	c.1531A>G	c.(1531-1533)ACT>GCT	p.T511A	KIAA1524_uc010hpv.1_Missense_Mutation_p.T78A	NM_020890	NP_065941	Q8TCG1	CIP2A_HUMAN	p90 autoantigen	511						cytoplasm|integral to membrane	protein binding			ovary(2)|central_nervous_system(1)	3						GCCAAAGGAGTAATCAAACGT	0.373												
MORC1	27136	broad.mit.edu	37	3	108682336	108682336	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:108682336A>T	uc003dxl.2	-	27	2811	c.2724T>A	c.(2722-2724)AAT>AAA	p.N908K	MORC1_uc011bhn.1_Missense_Mutation_p.N887K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	908	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTTTTCTTTTATTTTCACATT	0.308												
SLC9A10	285335	broad.mit.edu	37	3	111927065	111927065	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:111927065T>C	uc003dyu.2	-	16	2168	c.1946A>G	c.(1945-1947)TAC>TGC	p.Y649C	SLC9A10_uc011bhu.1_Intron|SLC9A10_uc010hqc.2_Missense_Mutation_p.Y601C	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	649	Helical; (Potential).|Ion transport-like.				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						AAGAAAACAGTAGTTAGTGTG	0.323												
SLC9A10	285335	broad.mit.edu	37	3	111997623	111997623	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:111997623T>C	uc003dyu.2	-	4	493	c.271A>G	c.(271-273)ACT>GCT	p.T91A	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Missense_Mutation_p.T91A	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	91	Helical; (Potential).				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						TCAAATGCAGTAGTAAAGAAA	0.313												
CCDC80	151887	broad.mit.edu	37	3	112324479	112324479	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:112324479G>T	uc003dzf.2	-	8	2856	c.2638C>A	c.(2638-2640)CCT>ACT	p.P880T	CCDC80_uc011bhv.1_Missense_Mutation_p.P853T|CCDC80_uc003dzg.2_Missense_Mutation_p.P880T	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	880										ovary(2)	2						ATTGGGGAAGGATACCAGGAT	0.463												
WDR52	55779	broad.mit.edu	37	3	113115503	113115503	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:113115503A>T	uc003eae.1	-	14	1687	c.1641T>A	c.(1639-1641)GAT>GAA	p.D547E		NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	547	WD 6.									central_nervous_system(1)	1						GCCCTTTTGGATCATAAAGTT	0.388												
CCDC52	152185	broad.mit.edu	37	3	113184570	113184570	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:113184570T>C	uc003eag.3	-	11	1508	c.1217A>G	c.(1216-1218)GAT>GGT	p.D406G	CCDC52_uc003eaf.3_RNA|CCDC52_uc003eah.1_Missense_Mutation_p.D302G	NM_144718	NP_653319	Q8N0Z3	SPICE_HUMAN	coiled-coil domain containing 52	406	Potential.				cell division|mitosis	centriole|spindle	protein binding				0						CTCTCGATGATCACCTAATAC	0.393												
SIDT1	54847	broad.mit.edu	37	3	113321913	113321913	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:113321913G>A	uc003eak.2	+	12	1830	c.1179G>A	c.(1177-1179)CAG>CAA	p.Q393Q	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Silent_p.Q393Q|SIDT1_uc011big.1_Silent_p.Q146Q|SIDT1_uc011bih.1_RNA|SIDT1_uc011bii.1_5'Flank	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	393	Cytoplasmic (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						CACCGGGCCAGTCAGACACAG	0.552												
SIDT1	54847	broad.mit.edu	37	3	113329934	113329934	+	Silent	SNP	C	C	T	rs145430934		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:113329934C>T	uc003eak.2	+	18	2451	c.1800C>T	c.(1798-1800)AGC>AGT	p.S600S	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Silent_p.S600S|SIDT1_uc011big.1_Silent_p.S353S|SIDT1_uc011bih.1_RNA|SIDT1_uc011bii.1_Silent_p.S53S	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	600	Cytoplasmic (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						TCAATGCCAGCGCCTACTCTG	0.577												
DRD3	1814	broad.mit.edu	37	3	113847607	113847607	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:113847607T>C	uc003ebd.2	-	8	1582	c.1159A>G	c.(1159-1161)AAT>GAT	p.N387D	DRD3_uc010hqn.1_Missense_Mutation_p.N387D|DRD3_uc003ebb.1_Missense_Mutation_p.N354D|DRD3_uc003ebc.1_Missense_Mutation_p.N387D	NM_000796	NP_000787	P35462	DRD3_HUMAN	dopamine receptor D3 isoform a	387	Helical; Name=7.				activation of adenylate cyclase activity by dopamine receptor signaling pathway|arachidonic acid secretion|behavioral response to cocaine|cellular calcium ion homeostasis|circadian regulation of gene expression|G-protein coupled receptor internalization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|locomotory behavior|musculoskeletal movement, spinal reflex action|negative regulation of blood pressure|negative regulation of oligodendrocyte differentiation|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|positive regulation of dopamine receptor signaling pathway|positive regulation of mitosis|prepulse inhibition|regulation of dopamine secretion|response to drug|response to histamine|response to morphine|social behavior|visual learning	integral to plasma membrane	dopamine D3 receptor activity|drug binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4					Apomorphine(DB00714)|Chlorprothixene(DB01239)|Cocaine(DB00907)|Methotrimeprazine(DB01403)|Olanzapine(DB00334)|Pramipexole(DB00413)|Ropinirole(DB00268)|Ziprasidone(DB00246)	AACTCGATATTGAAGGTGGTA	0.542												
DRD3	1814	broad.mit.edu	37	3	113890604	113890604	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:113890604G>A	uc003ebd.2	-	3	659	c.236C>T	c.(235-237)GCC>GTC	p.A79V	DRD3_uc010hqn.1_Missense_Mutation_p.A79V|DRD3_uc003ebb.1_Missense_Mutation_p.A79V|DRD3_uc003ebc.1_Missense_Mutation_p.A79V	NM_000796	NP_000787	P35462	DRD3_HUMAN	dopamine receptor D3 isoform a	79	Helical; Name=2.				activation of adenylate cyclase activity by dopamine receptor signaling pathway|arachidonic acid secretion|behavioral response to cocaine|cellular calcium ion homeostasis|circadian regulation of gene expression|G-protein coupled receptor internalization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|locomotory behavior|musculoskeletal movement, spinal reflex action|negative regulation of blood pressure|negative regulation of oligodendrocyte differentiation|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|positive regulation of dopamine receptor signaling pathway|positive regulation of mitosis|prepulse inhibition|regulation of dopamine secretion|response to drug|response to histamine|response to morphine|social behavior|visual learning	integral to plasma membrane	dopamine D3 receptor activity|drug binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4					Apomorphine(DB00714)|Chlorprothixene(DB01239)|Cocaine(DB00907)|Methotrimeprazine(DB01403)|Olanzapine(DB00334)|Pramipexole(DB00413)|Ropinirole(DB00268)|Ziprasidone(DB00246)	CACCAAGGTGGCCACCAGCAA	0.557												
ZBTB20	26137	broad.mit.edu	37	3	114069373	114069373	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:114069373C>T	uc003ebi.2	-	4	1732	c.1552G>A	c.(1552-1554)GGC>AGC	p.G518S	ZBTB20_uc003ebj.2_Missense_Mutation_p.G445S|ZBTB20_uc010hqp.2_Missense_Mutation_p.G445S|ZBTB20_uc003ebk.2_Missense_Mutation_p.G445S|ZBTB20_uc003ebl.2_Missense_Mutation_p.G445S|ZBTB20_uc003ebm.2_Missense_Mutation_p.G445S|ZBTB20_uc003ebn.2_Missense_Mutation_p.G445S|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	518					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		GGGCCACTGCCCGCGGGCTGG	0.622												
ZBTB20	26137	broad.mit.edu	37	3	114069493	114069493	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:114069493G>A	uc003ebi.2	-	4	1612	c.1432C>T	c.(1432-1434)CGC>TGC	p.R478C	ZBTB20_uc003ebj.2_Missense_Mutation_p.R405C|ZBTB20_uc010hqp.2_Missense_Mutation_p.R405C|ZBTB20_uc003ebk.2_Missense_Mutation_p.R405C|ZBTB20_uc003ebl.2_Missense_Mutation_p.R405C|ZBTB20_uc003ebm.2_Missense_Mutation_p.R405C|ZBTB20_uc003ebn.2_Missense_Mutation_p.R405C|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	478					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		TCTGTCTGGCGTAAGTAGAGC	0.562												
B4GALT4	8702	broad.mit.edu	37	3	118945806	118945806	+	Silent	SNP	C	C	T	rs143371634	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:118945806C>T	uc003ecg.2	-	4	977	c.336G>A	c.(334-336)CGG>CGA	p.R112R	B4GALT4_uc003ece.1_Silent_p.R112R|B4GALT4_uc003ecf.2_RNA|B4GALT4_uc003ech.2_Silent_p.R112R|B4GALT4_uc003eci.2_Silent_p.R112R|B4GALT4_uc011biy.1_RNA	NM_212543	NP_997708	O60513	B4GT4_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	112	Lumenal (Potential).				membrane lipid metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	metal ion binding|N-acetyllactosamine synthase activity				0				GBM - Glioblastoma multiforme(114;0.222)	N-Acetyl-D-glucosamine(DB00141)	GAGGGCGATACCGGCCTCTGG	0.502												
ARHGAP31	57514	broad.mit.edu	37	3	119120876	119120876	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:119120876G>A	uc003ecj.3	+	10	1809	c.1277G>A	c.(1276-1278)CGG>CAG	p.R426Q		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	426					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						GCTCAGGCCCGGCCCCCACCG	0.617												
ARHGAP31	57514	broad.mit.edu	37	3	119121036	119121036	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:119121036C>T	uc003ecj.3	+	10	1969	c.1437C>T	c.(1435-1437)AAC>AAT	p.N479N		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	479					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						CGCCGCGTAACCAGCGCAAGG	0.597												
C3orf15	89876	broad.mit.edu	37	3	119452224	119452224	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:119452224T>C	uc003ede.3	+	10	1292	c.1215T>C	c.(1213-1215)CTT>CTC	p.L405L	C3orf15_uc010hqy.1_Silent_p.L405L|C3orf15_uc010hqz.2_Silent_p.L343L|C3orf15_uc011bjd.1_Silent_p.L279L|C3orf15_uc011bje.1_Silent_p.L385L|C3orf15_uc010hra.1_Silent_p.L166L	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	Error:Variant_position_missing_in_Q7Z4T9_after_alignment						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		TAGTGGAACTTGAGTCATGTC	0.398												
POLQ	10721	broad.mit.edu	37	3	121207128	121207128	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:121207128A>G	uc003eee.3	-	16	4779	c.4650T>C	c.(4648-4650)TGT>TGC	p.C1550C	POLQ_uc003eed.2_Silent_p.C722C	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	1550					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		CATCATTGGAACAAGTCAACT	0.328								DNA_polymerases_(catalytic_subunits)				
POLQ	10721	broad.mit.edu	37	3	121263572	121263572	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:121263572A>G	uc003eee.3	-	2	472	c.343_splice	c.e2+1	p.A115_splice		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta						DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		AAATTTGGATACCTGAATAAA	0.333								DNA_polymerases_(catalytic_subunits)				
GOLGB1	2804	broad.mit.edu	37	3	121409831	121409831	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:121409831C>T	uc003eei.3	-	14	8491	c.8365G>A	c.(8365-8367)GCC>ACC	p.A2789T	GOLGB1_uc010hrc.2_Missense_Mutation_p.A2794T|GOLGB1_uc003eej.3_Missense_Mutation_p.A2755T	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	2789	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding	p.A2789T(1)		ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		ATTGAAAAGGCGGTTTCAGAA	0.423												
GOLGB1	2804	broad.mit.edu	37	3	121414358	121414358	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:121414358T>C	uc003eei.3	-	13	5123	c.4997A>G	c.(4996-4998)GAA>GGA	p.E1666G	GOLGB1_uc010hrc.2_Missense_Mutation_p.E1671G|GOLGB1_uc003eej.3_Missense_Mutation_p.E1632G|GOLGB1_uc011bjm.1_Missense_Mutation_p.E1552G|GOLGB1_uc010hrd.1_Missense_Mutation_p.E1630G	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	1666	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TTGCTCAGCTTCCTGCAACTG	0.428												
GOLGB1	2804	broad.mit.edu	37	3	121415161	121415161	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:121415161T>C	uc003eei.3	-	13	4320	c.4194A>G	c.(4192-4194)CAA>CAG	p.Q1398Q	GOLGB1_uc010hrc.2_Silent_p.Q1403Q|GOLGB1_uc003eej.3_Silent_p.Q1364Q|GOLGB1_uc011bjm.1_Silent_p.Q1284Q|GOLGB1_uc010hrd.1_Silent_p.Q1362Q	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	1398	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TTATGAGTTTTTGCAGTTCAT	0.408												
GOLGB1	2804	broad.mit.edu	37	3	121417318	121417318	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:121417318A>G	uc003eei.3	-	13	2163	c.2037T>C	c.(2035-2037)GGT>GGC	p.G679G	GOLGB1_uc010hrc.2_Silent_p.G684G|GOLGB1_uc003eej.3_Silent_p.G645G|GOLGB1_uc011bjm.1_Silent_p.G565G|GOLGB1_uc010hrd.1_Silent_p.G643G	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	679	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		GATGACACTGACCAATATCTG	0.353												
ILDR1	286676	broad.mit.edu	37	3	121712306	121712306	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:121712306T>C	uc003ees.2	-	7	1396	c.1290A>G	c.(1288-1290)GCA>GCG	p.A430A	ILDR1_uc003eeq.2_Silent_p.A398A|ILDR1_uc003eer.2_Silent_p.A386A|ILDR1_uc010hrg.2_Silent_p.A341A	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	430	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		GCCGCCAGCGTGCCTCACTGG	0.652												
CASR	846	broad.mit.edu	37	3	122003712	122003712	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:122003712G>A	uc003eev.3	+	7	3283	c.2911G>A	c.(2911-2913)GGC>AGC	p.G971S	CASR_uc003eew.3_Missense_Mutation_p.G981S	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	971	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CTTTGGCAGCGGCACGGTCAC	0.582												
PARP15	165631	broad.mit.edu	37	3	122335917	122335917	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:122335917T>C	uc003efm.2	+	6	972	c.906T>C	c.(904-906)GGT>GGC	p.G302G	PARP15_uc003efn.2_Intron|PARP15_uc003efo.1_Silent_p.G49G|PARP15_uc003efp.1_Silent_p.G68G|PARP15_uc011bjt.1_Silent_p.G68G	NM_001113523	NP_001106995	Q460N3	PAR15_HUMAN	poly (ADP-ribose) polymerase family, member 15	280	Macro 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	NAD+ ADP-ribosyltransferase activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)	5				GBM - Glioblastoma multiforme(114;0.0531)		TGAAAATCGGTGCAATTACTT	0.403												
ADCY5	111	broad.mit.edu	37	3	123021996	123021996	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:123021996T>C	uc003egh.1	-	14	2630	c.2630A>G	c.(2629-2631)AAC>AGC	p.N877S	ADCY5_uc003egg.1_Missense_Mutation_p.N510S|ADCY5_uc003egi.1_Missense_Mutation_p.N436S	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	877	Extracellular (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		GTGACACGCGTTGACCTGGCT	0.642												
KALRN	8997	broad.mit.edu	37	3	124281903	124281903	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:124281903G>A	uc003ehg.2	+	34	5270	c.5143G>A	c.(5143-5145)GTG>ATG	p.V1715M	KALRN_uc003ehi.2_Missense_Mutation_p.V88M	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1715					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CCGAAGCAGCGTGGAGATGGA	0.637												
ITGB5	3693	broad.mit.edu	37	3	124487942	124487942	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:124487942C>T	uc003eho.2	-	12	2232	c.1935G>A	c.(1933-1935)CTG>CTA	p.L645L	ITGB5_uc010hrx.2_RNA	NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	645	Extracellular (Potential).			L -> P (in Ref. 3; AAA59183).	cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		AGTGGAGCAGCAGGCACTCGA	0.547												
SLC12A8	84561	broad.mit.edu	37	3	124826845	124826845	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:124826845G>A	uc003ehv.3	-	10	1296	c.1185C>T	c.(1183-1185)TAC>TAT	p.Y395Y	SLC12A8_uc003ehw.3_Silent_p.Y424Y|SLC12A8_uc003eht.3_Silent_p.Y196Y|SLC12A8_uc003ehu.3_Silent_p.Y148Y|SLC12A8_uc010hry.2_Silent_p.Y148Y	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	395	Helical; (Potential).				potassium ion transport	integral to membrane	symporter activity				0						CCACTGCAACGTATGTCAGCA	0.572												
SLC12A8	84561	broad.mit.edu	37	3	124906230	124906230	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:124906230C>T	uc003ehv.3	-	4	352	c.241G>A	c.(241-243)GTC>ATC	p.V81I	SLC12A8_uc003ehw.3_Missense_Mutation_p.V110I|SLC12A8_uc010hrz.1_5'UTR	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	81	Helical; (Potential).				potassium ion transport	integral to membrane	symporter activity				0						ACCAGGATGACGAAGGACACC	0.622												
CCDC37	348807	broad.mit.edu	37	3	126154470	126154470	+	Missense_Mutation	SNP	G	G	A	rs142534437	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:126154470G>A	uc003eiu.1	+	16	1796	c.1697G>A	c.(1696-1698)CGC>CAC	p.R566H	CCDC37_uc010hsg.1_Missense_Mutation_p.R567H	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	566	Potential.									ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		GCCCGGGCGCGCGCCCAGGCT	0.602												
UROC1	131669	broad.mit.edu	37	3	126222903	126222903	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:126222903T>C	uc003eiz.1	-	9	869	c.837A>G	c.(835-837)AAA>AAG	p.K279K	UROC1_uc010hsi.1_Silent_p.K279K	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	279					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		GCCTGTGGCGTTTCTCAAGGG	0.572												
PLXNA1	5361	broad.mit.edu	37	3	126733642	126733642	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:126733642C>T	uc003ejg.2	+	13	2780	c.2776C>T	c.(2776-2778)CGC>TGC	p.R926C		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	949	IPT/TIG 1.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		ACCACACTACCGCGCCCTGTC	0.647												
PLXNA1	5361	broad.mit.edu	37	3	126748346	126748346	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:126748346T>C	uc003ejg.2	+	26	4772	c.4768T>C	c.(4768-4770)TCC>CCC	p.S1590P	PLXNA1_uc003ejh.2_Missense_Mutation_p.S258P	NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1613	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CATCTCCAACTCCTCCACCTT	0.677												
ACAD9	28976	broad.mit.edu	37	3	128627052	128627052	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:128627052T>C	uc003ela.3	+	13	1505	c.1303T>C	c.(1303-1305)TAC>CAC	p.Y435H	ACAD9_uc010hsw.1_Missense_Mutation_p.Y312H|ACAD9_uc011bks.1_Missense_Mutation_p.Y312H|ACAD9_uc003elb.2_Missense_Mutation_p.Y312H|ACAD9_uc003eld.1_RNA|ACAD9_uc003ele.2_Missense_Mutation_p.Y87H	NM_014049	NP_054768	Q9H845	ACAD9_HUMAN	acyl-Coenzyme A dehydrogenase family, member 9	435						mitochondrion	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding			ovary(2)|central_nervous_system(1)	3						TCTCCGGATGTACATCGCCCT	0.597												
IFT122	55764	broad.mit.edu	37	3	129202433	129202433	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:129202433C>T	uc003emm.2	+	15	1965	c.1759C>T	c.(1759-1761)CGG>TGG	p.R587W	IFT122_uc003eml.2_Missense_Mutation_p.R638W|IFT122_uc003emn.2_Missense_Mutation_p.R528W|IFT122_uc003emo.2_Missense_Mutation_p.R476W|IFT122_uc003emp.2_Missense_Mutation_p.R437W|IFT122_uc010htc.2_Missense_Mutation_p.R579W|IFT122_uc011bky.1_Missense_Mutation_p.R378W|IFT122_uc003emq.2_Missense_Mutation_p.R427W|IFT122_uc003emr.2_Missense_Mutation_p.R378W|IFT122_uc011bla.1_Missense_Mutation_p.R378W|IFT122_uc011bkx.1_Missense_Mutation_p.R427W|IFT122_uc011bkz.1_RNA|IFT122_uc010htd.1_Missense_Mutation_p.R66W	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	587					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						CCCTGTGCACCGGCAGAAGCT	0.562												
TMCC1	23023	broad.mit.edu	37	3	129370592	129370592	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:129370592T>C	uc003emz.3	-	7	2195	c.1694A>G	c.(1693-1695)CAG>CGG	p.Q565R	TMCC1_uc003emy.3_Missense_Mutation_p.Q241R|TMCC1_uc011blc.1_Missense_Mutation_p.Q386R|TMCC1_uc010htg.2_Missense_Mutation_p.Q451R	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	565	Potential.					integral to membrane				skin(1)	1						CTGCTGCTGCTGCAGCTCCAT	0.572												
COL6A6	131873	broad.mit.edu	37	3	130346189	130346189	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:130346189T>C	uc010htl.2	+	25	4999	c.4968T>C	c.(4966-4968)GGT>GGC	p.G1656G	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1656	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CAGGTTATGGTAGTGTCGGAC	0.433												
COL6A6	131873	broad.mit.edu	37	3	130394222	130394222	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:130394222C>A	uc010htl.2	+	36	6804	c.6773C>A	c.(6772-6774)GCT>GAT	p.A2258D	COL6A6_uc003eni.3_Missense_Mutation_p.A357D	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	2258	Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ATAGAAAGTGCTCCCAAACAA	0.373												
ASTE1	28990	broad.mit.edu	37	3	130743233	130743233	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:130743233T>C	uc003env.1	-	3	1360	c.918A>G	c.(916-918)CTA>CTG	p.L306L	NEK11_uc003enx.2_5'Flank|NEK11_uc003eny.2_5'Flank|NEK11_uc003eoa.2_5'Flank|NEK11_uc003enz.2_5'Flank|NEK11_uc010htn.2_5'Flank|NEK11_uc011blk.1_5'Flank|NEK11_uc011bll.1_5'Flank|NEK11_uc003enw.1_5'Flank|NEK11_uc011blm.1_5'Flank|ASTE1_uc010htm.1_Silent_p.L306L|ASTE1_uc011blj.1_RNA	NM_014065	NP_054784	Q2TB18	ASTE1_HUMAN	asteroid homolog 1	306					DNA repair		nuclease activity				0						AGAAGTCCTGTAGCTTCACCT	0.423												
DNAJC13	23317	broad.mit.edu	37	3	132213065	132213065	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:132213065T>C	uc003eor.2	+	34	3968	c.3903T>C	c.(3901-3903)GAT>GAC	p.D1301D		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	1301	J.						heat shock protein binding			ovary(1)|breast(1)	2						CAATAGATGATGCTTATGAAG	0.378												
TMEM108	66000	broad.mit.edu	37	3	132948153	132948153	+	Translation_Start_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:132948153A>G	uc003eph.2	+	3	272	c.-2A>G	c.(-4-0)ATACC>ATGCC		TMEM108_uc003epi.2_Translation_Start_Site|TMEM108_uc003epj.1_Translation_Start_Site|TMEM108_uc003epk.2_Translation_Start_Site	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor							integral to membrane				ovary(2)|skin(2)	4						ACCAGATGATACCATGAAGAG	0.343												
BFSP2	8419	broad.mit.edu	37	3	133167397	133167397	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:133167397A>G	uc003epn.1	+	3	775	c.637A>G	c.(637-639)ATT>GTT	p.I213V	uc003epo.2_Intron	NM_003571	NP_003562	Q13515	BFSP2_HUMAN	phakinin	213	Rod.|Potential.				response to stimulus|visual perception	cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens				0						GTATAAAGTCATTGATGAGGC	0.378												
TOPBP1	11073	broad.mit.edu	37	3	133356834	133356834	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:133356834G>A	uc003eps.2	-	14	2538	c.2406C>T	c.(2404-2406)GTC>GTT	p.V802V		NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	802					DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						GGGAGGCTGCGACCTGTCTGG	0.493								Other_conserved_DNA_damage_response_genes				
TOPBP1	11073	broad.mit.edu	37	3	133358933	133358933	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:133358933A>G	uc003eps.2	-	13	2235	c.2103T>C	c.(2101-2103)GGT>GGC	p.G701G		NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	701	BRCT 5.				DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						ATTTAGAGCCACCACGTTCTT	0.408								Other_conserved_DNA_damage_response_genes				
TF	7018	broad.mit.edu	37	3	133467417	133467417	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:133467417A>G	uc003epu.1	+	7	1933	c.205A>G	c.(205-207)AGG>GGG	p.R69G	TF_uc011bls.1_Missense_Mutation_p.R69G|TF_uc011blt.1_Intron|TF_uc003epw.1_Intron|TF_uc010htv.1_RNA|TF_uc003epv.1_Missense_Mutation_p.R69G	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	69	Transferrin-like 1.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	TGATTGCATCAGGGCCATTGC	0.473												
MSL2	55167	broad.mit.edu	37	3	135870304	135870304	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:135870304A>G	uc003eqx.1	-	2	2152	c.1419T>C	c.(1417-1419)GTT>GTC	p.V473V	MSL2_uc011bmb.1_Silent_p.V399V	NM_018133	NP_060603	Q9HCI7	MSL2_HUMAN	ring finger protein 184 isoform 1	473					histone H4-K16 acetylation	MSL complex	zinc ion binding			central_nervous_system(1)	1						GGCATGTAAGAACACTTGGAT	0.473												
STAG1	10274	broad.mit.edu	37	3	136057249	136057249	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:136057249T>C	uc003era.1	-	33	4008	c.3716A>G	c.(3715-3717)GAC>GGC	p.D1239G	STAG1_uc003erb.1_Missense_Mutation_p.D1202G	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	1239					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						GTCAAAGAAGTCTGGCCTTAG	0.368												
STAG1	10274	broad.mit.edu	37	3	136062728	136062728	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:136062728T>C	uc003era.1	-	30	3684	c.3392A>G	c.(3391-3393)GAC>GGC	p.D1131G	STAG1_uc003erb.1_Missense_Mutation_p.D1131G	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	1131					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						TTGAATCTGGTCTCCCATGGG	0.458												
DBR1	51163	broad.mit.edu	37	3	137886057	137886057	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:137886057A>G	uc003erv.2	-	5	716	c.580T>C	c.(580-582)TCT>CCT	p.S194P	DBR1_uc003eru.2_Missense_Mutation_p.S143P	NM_016216	NP_057300	Q9UK59	DBR1_HUMAN	debranching enzyme homolog 1	194						nucleus	metal ion binding|RNA lariat debranching enzyme activity				0						CGGAAAAAAGATTTAGTCTTA	0.368												
ESYT3	83850	broad.mit.edu	37	3	138193080	138193080	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:138193080C>T	uc003esk.2	+	20	2580	c.2354C>T	c.(2353-2355)ACC>ATC	p.T785I		NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	785	C2 3.					integral to membrane|plasma membrane					0						ACACCATGTACCAGCAGTGGA	0.448												
COPB2	9276	broad.mit.edu	37	3	139077910	139077910	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:139077910A>G	uc003etf.3	-	19	2544	c.2414T>C	c.(2413-2415)TTT>TCT	p.F805S	COPB2_uc011bmv.1_Missense_Mutation_p.F776S|COPB2_uc010hui.2_Missense_Mutation_p.F776S	NM_004766	NP_004757	P35606	COPB2_HUMAN	coatomer protein complex, subunit beta 2 (beta	805					COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(2)	2						TTCAACAACAAAGGCTTCTTT	0.453												
TRIM42	287015	broad.mit.edu	37	3	140406631	140406631	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:140406631G>T	uc003eto.1	+	3	1298	c.1107G>T	c.(1105-1107)AAG>AAT	p.K369N		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	369						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						AAGCTGACAAGGAGGCAAAGC	0.363												
RASA2	5922	broad.mit.edu	37	3	141292021	141292021	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:141292021T>C	uc003etz.1	+	13	1317	c.1317T>C	c.(1315-1317)GAT>GAC	p.D439D	RASA2_uc010huq.1_Silent_p.D439D|RASA2_uc003eua.1_Silent_p.D439D|RASA2_uc011bnc.1_Silent_p.D31D	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	439	Ras-GAP.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						GTGAAATCGATCCTATTAAAT	0.254												
RASA2	5922	broad.mit.edu	37	3	141300007	141300007	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:141300007A>G	uc003etz.1	+	17	1740	c.1740A>G	c.(1738-1740)ATA>ATG	p.I580M	RASA2_uc010huq.1_Missense_Mutation_p.I580M|RASA2_uc003eua.1_Missense_Mutation_p.I580M|RASA2_uc011bnc.1_Missense_Mutation_p.I172M	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	580					intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						GATATATTATAGCAGTTAAAA	0.249												
XRN1	54464	broad.mit.edu	37	3	142103414	142103414	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:142103414T>G	uc003eus.2	-	21	2520	c.2453A>C	c.(2452-2454)AAA>ACA	p.K818T	XRN1_uc010huu.2_Missense_Mutation_p.K284T|XRN1_uc003eut.2_Missense_Mutation_p.K818T|XRN1_uc003euu.2_Missense_Mutation_p.K818T|XRN1_uc003euv.1_Missense_Mutation_p.K679T	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	818					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						TGACCACTGTTTCTCTAGACG	0.303												
XRN1	54464	broad.mit.edu	37	3	142137699	142137699	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:142137699T>C	uc003eus.2	-	11	1265	c.1198A>G	c.(1198-1200)ACT>GCT	p.T400A	XRN1_uc003eut.2_Missense_Mutation_p.T400A|XRN1_uc003euu.2_Missense_Mutation_p.T400A|XRN1_uc003euv.1_Missense_Mutation_p.T261A|XRN1_uc003euw.2_Missense_Mutation_p.T400A|XRN1_uc011bnh.1_Missense_Mutation_p.T190A	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	400					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						TCTAAAGCAGTCCAACACAGA	0.338												
PLS1	5357	broad.mit.edu	37	3	142423328	142423328	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:142423328A>T	uc010huv.2	+	14	1688	c.1529A>T	c.(1528-1530)GAT>GTT	p.D510V	PLS1_uc003euz.2_Missense_Mutation_p.D510V|PLS1_uc003eva.2_Missense_Mutation_p.D510V	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	510	Actin-binding 2.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						GTGTTATCGGATCTTGGAGAG	0.313												
SLC9A9	285195	broad.mit.edu	37	3	142987779	142987779	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:142987779T>C	uc003evn.2	-	15	1830	c.1648A>G	c.(1648-1650)ACA>GCA	p.T550A		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	550					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						GGTAATGTTGTAGTCAGCGGA	0.473												
PLSCR4	57088	broad.mit.edu	37	3	145914557	145914557	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:145914557A>G	uc010huy.2	-	7	977	c.648T>C	c.(646-648)GGT>GGC	p.G216G	PLSCR4_uc010huz.2_Silent_p.G216G|PLSCR4_uc003evt.3_Silent_p.G216G|PLSCR4_uc010hva.2_Silent_p.G126G|PLSCR4_uc003evu.3_Silent_p.G111G	NM_001128305	NP_001121777	Q9NRQ2	PLS4_HUMAN	phospholipid scramblase 4 isoform a	216	Cytoplasmic (By similarity).				blood coagulation|phospholipid scrambling	integral to membrane	calcium ion binding|phospholipid scramblase activity|SH3 domain binding				0						CAATGGTGACACCAGGAGGAC	0.463												
ZIC4	84107	broad.mit.edu	37	3	147120530	147120530	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:147120530T>C	uc003ewd.1	-	2	328	c.55A>G	c.(55-57)ACT>GCT	p.T19A	ZIC4_uc011bno.1_Missense_Mutation_p.T69A	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	19						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						TCTTTAAGAGTGTTTCGGTAA	0.323												
ZIC1	7545	broad.mit.edu	37	3	147128763	147128763	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:147128763A>G	uc003ewe.2	+	1	1583	c.864A>G	c.(862-864)AAA>AAG	p.K288K		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	288	C2H2-type 2; atypical.				behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CCAAATACAAACTGGTTAACC	0.587												
RNF13	11342	broad.mit.edu	37	3	149589943	149589943	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:149589943T>C	uc003exn.3	+	5	1105	c.321_splice	c.e5+2	p.K107_splice	RNF13_uc003exp.3_Splice_Site_p.K107_splice|RNF13_uc010hvh.2_Splice_Site	NM_007282	NP_009213	O43567	RNF13_HUMAN	ring finger protein 13						protein autoubiquitination	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane|nuclear inner membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		all_neural(597;0.0138)|Myeloproliferative disorder(1037;0.0255)	LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			GATATAAAGGTATGATTATCT	0.294												
P2RY14	9934	broad.mit.edu	37	3	150931733	150931733	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:150931733T>C	uc003eyr.1	-	3	850	c.372A>G	c.(370-372)GTA>GTG	p.V124V	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY14_uc003eys.1_Silent_p.V124V	NM_001081455	NP_001074924	Q15391	P2Y14_HUMAN	P2Y14 receptor	124	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled|UDP-activated nucleotide receptor activity			large_intestine(2)|ovary(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AAAGAGGCTTTACAATTTTAT	0.423												
P2RY13	53829	broad.mit.edu	37	3	151046137	151046137	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:151046137T>C	uc003eyv.2	-	2	728	c.707A>G	c.(706-708)TAT>TGT	p.Y236C	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_176894	NP_795713	Q9BPV8	P2Y13_HUMAN	purinergic receptor P2Y, G-protein coupled, 13	236	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(3)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0189)|Lung(72;0.0278)			ATAAGAATCATATACTTTTTT	0.328												
MED12L	116931	broad.mit.edu	37	3	151085530	151085530	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:151085530G>A	uc003eyp.2	+	22	3357	c.3319G>A	c.(3319-3321)GCA>ACA	p.A1107T	MED12L_uc011bnz.1_Missense_Mutation_p.A967T|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.A270T	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1107					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCAGCATGTCGCACTTCCCTC	0.453												
IGSF10	285313	broad.mit.edu	37	3	151155548	151155548	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:151155548T>C	uc011bod.1	-	6	6801	c.6801A>G	c.(6799-6801)CCA>CCG	p.P2267P	IGSF10_uc011bob.1_Silent_p.P294P|IGSF10_uc011boc.1_Silent_p.P246P	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2267	Ig-like C2-type 9.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CTTCAGGAGATGGTGTCCCTT	0.408												
AADACL2	344752	broad.mit.edu	37	3	151475230	151475230	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:151475230A>G	uc003ezc.2	+	5	1174	c.1054A>G	c.(1054-1056)ACA>GCA	p.T352A	AADACL2_uc010hvn.2_Missense_Mutation_p.T139A	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	352						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			TATGTATGTTACAAGACTTCG	0.358												
SLC33A1	9197	broad.mit.edu	37	3	155560327	155560327	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:155560327A>G	uc003fan.3	-	2	1238	c.857T>C	c.(856-858)GTA>GCA	p.V286A	SLC33A1_uc003fao.1_Missense_Mutation_p.V286A	NM_004733	NP_004724	O00400	ACATN_HUMAN	acetyl-coenzyme A transporter	286	Cytoplasmic (Potential).				cell death|transmembrane transport	endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane|membrane fraction	acetyl-CoA transporter activity			ovary(2)|large_intestine(1)|pancreas(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TTCTTTTACTACTGATACTTC	0.318												
GFM1	85476	broad.mit.edu	37	3	158402330	158402330	+	Silent	SNP	C	C	T	rs141903395		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:158402330C>T	uc003fce.2	+	15	1889	c.1782C>T	c.(1780-1782)TGC>TGT	p.C594C	GFM1_uc003fcf.2_RNA|GFM1_uc003fcg.2_Silent_p.C525C	NM_024996	NP_079272	Q96RP9	EFGM_HUMAN	G elongation factor, mitochondrial 1 precursor	594					mitochondrial translational elongation	mitochondrion	GTP binding|GTPase activity|translation elongation factor activity			ovary(3)|central_nervous_system(1)	4			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)			TAGATGCCTGCGAGAAGGGCC	0.438												
NMD3	51068	broad.mit.edu	37	3	160955951	160955951	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:160955951G>A	uc003feb.1	+	8	747	c.628G>A	c.(628-630)GAA>AAA	p.E210K	NMD3_uc003fec.2_Missense_Mutation_p.E210K|NMD3_uc003fed.1_Missense_Mutation_p.E210K|NMD3_uc010hwh.2_Missense_Mutation_p.E30K	NM_015938	NP_057022	Q96D46	NMD3_HUMAN	NMD3 homolog	210					protein transport	cytoplasm|nucleolus|nucleoplasm				ovary(1)	1			Lung(72;0.00111)|LUSC - Lung squamous cell carcinoma(72;0.00156)			GAAGATGGTCGAATTTCTTCA	0.338												
SI	6476	broad.mit.edu	37	3	164767648	164767648	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:164767648A>G	uc003fei.2	-	14	1590	c.1528T>C	c.(1528-1530)TCC>CCC	p.S510P		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	510	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ATAAAGCTGGAAACTTCATTC	0.294										HNSCC(35;0.089)		
GOLIM4	27333	broad.mit.edu	37	3	167750468	167750468	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:167750468T>C	uc003ffe.2	-	9	1360	c.1016A>G	c.(1015-1017)CAC>CGC	p.H339R	GOLIM4_uc011bpe.1_Missense_Mutation_p.H339R|GOLIM4_uc011bpf.1_Missense_Mutation_p.H311R|GOLIM4_uc011bpg.1_Missense_Mutation_p.H311R	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	339	Glu-rich.|Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						GGCCTTTCTGTGCTCCTCTTC	0.562												
SLC7A14	57709	broad.mit.edu	37	3	170198305	170198305	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:170198305T>C	uc003fgz.2	-	7	2082	c.1766A>G	c.(1765-1767)TAC>TGC	p.Y589C	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	589						integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			CTCTGAGATGTAGTCAGAACC	0.562												
PLD1	5337	broad.mit.edu	37	3	171405313	171405313	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:171405313T>C	uc003fhs.2	-	15	1717	c.1601A>G	c.(1600-1602)AAC>AGC	p.N534S	PLD1_uc003fht.2_Missense_Mutation_p.N534S	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	534	Catalytic.				cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	GATGGGTAGGTTTTGAACAGG	0.373												
PLD1	5337	broad.mit.edu	37	3	171406516	171406516	+	Missense_Mutation	SNP	C	C	T	rs149680370		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:171406516C>T	uc003fhs.2	-	14	1605	c.1489G>A	c.(1489-1491)GTG>ATG	p.V497M	PLD1_uc003fht.2_Missense_Mutation_p.V497M	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	497	Catalytic.				cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	ACACTGCCCACGTCTGTGAGT	0.483												
PLD1	5337	broad.mit.edu	37	3	171406526	171406526	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:171406526T>C	uc003fhs.2	-	14	1595	c.1479A>G	c.(1477-1479)AGA>AGG	p.R493R	PLD1_uc003fht.2_Silent_p.R493R	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	493	Catalytic.				cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	CGTCTGTGAGTCTGTGCTCAT	0.507												
PLD1	5337	broad.mit.edu	37	3	171455811	171455811	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:171455811T>A	uc003fhs.2	-	2	147	c.31A>T	c.(31-33)ACC>TCC	p.T11S	PLD1_uc003fht.2_Missense_Mutation_p.T11S	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	11					cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	AGTGCAGAGGTATTTACCCGT	0.433												
FNDC3B	64778	broad.mit.edu	37	3	172065073	172065073	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:172065073A>G	uc003fhy.2	+	21	2608	c.2436A>G	c.(2434-2436)GAA>GAG	p.E812E	FNDC3B_uc003fhz.3_Silent_p.E812E	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	812	Fibronectin type-III 6.					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		AATCCTTAGAACTCATTTATC	0.428												
NCEH1	57552	broad.mit.edu	37	3	172365860	172365860	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:172365860T>C	uc011bpx.1	-	2	417	c.279A>G	c.(277-279)GCA>GCG	p.A93A	NCEH1_uc003fig.2_Silent_p.A93A|NCEH1_uc011bpw.1_5'UTR|NCEH1_uc011bpy.1_Intron	NM_001146276	NP_001139748	Q6PIU2	NCEH1_HUMAN	arylacetamide deacetylase-like 1 isoform a	61	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum|integral to membrane|microsome	carboxylesterase activity				0						TAAAATTCAGTGCCAGCAGGT	0.507												
NLGN1	22871	broad.mit.edu	37	3	173322505	173322505	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:173322505G>A	uc003fio.1	+	3	540	c.117G>A	c.(115-117)CAG>CAA	p.Q39Q	NLGN1_uc010hww.1_Silent_p.Q39Q|NLGN1_uc003fip.1_Silent_p.Q39Q	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	39					calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			GTTTGCTTCAGGCTGGCCATG	0.468												
NLGN1	22871	broad.mit.edu	37	3	173998423	173998423	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:173998423A>G	uc003fio.1	+	7	2225	c.1802A>G	c.(1801-1803)AAT>AGT	p.N601S	NLGN1_uc003fip.1_Missense_Mutation_p.N601S	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	618	Extracellular (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			TACAGAGCCAATAAGGTGAAC	0.388												
NAALADL2	254827	broad.mit.edu	37	3	174814922	174814922	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:174814922T>C	uc003fit.2	+	2	473	c.386T>C	c.(385-387)CTT>CCT	p.L129P	NAALADL2_uc003fiu.1_Missense_Mutation_p.L122P	NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	129	Helical; Signal-anchor for type II membrane protein; (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		TTAAAAATACTTTGCACAGCC	0.383												
ZMAT3	64393	broad.mit.edu	37	3	178745553	178745553	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:178745553A>G	uc003fjg.2	-	4	697	c.438T>C	c.(436-438)AAT>AAC	p.N146N	ZMAT3_uc010hxa.2_Silent_p.N146N|ZMAT3_uc003fji.2_Silent_p.N146N	NM_022470	NP_071915	Q9HA38	ZMAT3_HUMAN	p53 target zinc finger protein isoform 1	146					apoptosis|protein transport|regulation of growth|response to DNA damage stimulus|transmembrane transport	nucleolus	RNA binding|zinc ion binding			ovary(2)	2	all_cancers(143;3.31e-18)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;6.74e-27)|GBM - Glioblastoma multiforme(14;0.00448)|BRCA - Breast invasive adenocarcinoma(182;0.0527)			TACAGTAATCATTCTCCGTGG	0.493												
PIK3CA	5290	broad.mit.edu	37	3	178916944	178916944	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:178916944A>G	uc003fjk.2	+	2	488	c.331A>G	c.(331-333)AAG>GAG	p.K111E		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	111					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.K111N(10)|p.K111E(7)|p.K111R(1)|p.K111del(1)|p.K111_I112>N(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			CCGTGAAGAAAAGATCCTCAA	0.333		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)		
PIK3CA	5290	broad.mit.edu	37	3	178948070	178948070	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:178948070A>G	uc003fjk.2	+	20	2999	c.2842A>G	c.(2842-2844)AAA>GAA	p.K948E		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	948	PI3K/PI4K.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			ATTTGGTTATAAACGAGAACG	0.323		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)		
B3GNT5	84002	broad.mit.edu	37	3	182987868	182987868	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:182987868A>G	uc003flk.2	+	2	812	c.282A>G	c.(280-282)GTA>GTG	p.V94V	MCF2L2_uc003fli.1_Intron|MCF2L2_uc003flj.1_Intron|MCF2L2_uc011bqr.1_Intron|B3GNT5_uc003fll.2_Silent_p.V94V|B3GNT5_uc003flm.2_Silent_p.V94V	NM_032047	NP_114436	Q9BYG0	B3GN5_HUMAN	UDP-GlcNAc:betaGal	94	Lumenal (Potential).				central nervous system development|glycolipid biosynthetic process|protein glycosylation	Golgi membrane|integral to membrane	beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity|galactosyltransferase activity			ovary(1)	1	all_cancers(143;8.52e-13)|Ovarian(172;0.0355)		all cancers(12;4.52e-44)|Epithelial(37;8.82e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			TACTGTTTGTAAAAACTGCTC	0.453												
KLHL6	89857	broad.mit.edu	37	3	183225901	183225901	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:183225901T>C	uc003flr.2	-	3	913	c.855A>G	c.(853-855)CCA>CCG	p.P285P	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Silent_p.P283P	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	285										haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			GGAAGACCTCTGGGCACTGCC	0.532												
YEATS2	55689	broad.mit.edu	37	3	183508661	183508661	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:183508661T>A	uc003fly.2	+	21	3185	c.2990T>A	c.(2989-2991)GTG>GAG	p.V997E	YEATS2_uc003flz.2_Missense_Mutation_p.V76E	NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	997					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CAAGTGTGTGTGAGCCAGGCC	0.592												
ABCF3	55324	broad.mit.edu	37	3	183906155	183906155	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:183906155C>T	uc003fmz.2	+	7	929	c.796C>T	c.(796-798)CGG>TGG	p.R266W	ABCF3_uc003fna.2_Missense_Mutation_p.R260W|ABCF3_uc003fnb.2_5'Flank	NM_018358	NP_060828	Q9NUQ8	ABCF3_HUMAN	ATP-binding cassette, sub-family F (GCN20),	266	ABC transporter 1.						ATP binding|ATPase activity			ovary(3)|lung(1)	4	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.35e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGATTTGCTACGGAGGGAGCG	0.602												
PSMD2	5708	broad.mit.edu	37	3	184019697	184019697	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:184019697G>A	uc003fnn.1	+	5	575	c.542G>A	c.(541-543)CGG>CAG	p.R181Q	PSMD2_uc011brj.1_Missense_Mutation_p.R22Q|PSMD2_uc011brk.1_Missense_Mutation_p.R51Q	NM_002808	NP_002799	Q13200	PSMD2_HUMAN	proteasome 26S non-ATPase subunit 2	181					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding				0	all_cancers(143;1.54e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Bortezomib(DB00188)	AAGGTCCAGCGGGAGCCTCTG	0.542												
PSMD2	5708	broad.mit.edu	37	3	184020206	184020206	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:184020206T>C	uc003fnn.1	+	6	786	c.753T>C	c.(751-753)TGT>TGC	p.C251C	PSMD2_uc011brj.1_Silent_p.C92C|PSMD2_uc011brk.1_Silent_p.C121C	NM_002808	NP_002799	Q13200	PSMD2_HUMAN	proteasome 26S non-ATPase subunit 2	251					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding				0	all_cancers(143;1.54e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Bortezomib(DB00188)	TACTGCGTTGTGCCCTGGGTG	0.463												
VPS8	23355	broad.mit.edu	37	3	184557512	184557512	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:184557512T>C	uc003fpb.1	+	7	678	c.507T>C	c.(505-507)GGT>GGC	p.G169G	VPS8_uc010hyd.1_Silent_p.G169G|VPS8_uc003fpc.1_3'UTR	NM_015303	NP_056118	Q8N3P4	VPS8_HUMAN	vacuolar protein sorting 8 homolog isoform b	169							zinc ion binding			ovary(1)	1	all_cancers(143;2.51e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.02e-33)|OV - Ovarian serous cystadenocarcinoma(80;4.81e-22)			TAGCAGTGGGTACATCTCATG	0.313												
C3orf70	285382	broad.mit.edu	37	3	184801194	184801194	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:184801194A>G	uc003fpd.2	-	2	545	c.354T>C	c.(352-354)CCT>CCC	p.P118P		NM_001025266	NP_001020437	A6NLC5	CC070_HUMAN	hypothetical protein LOC285382	118											0						TCGGTGAGTCAGGGGGAAGGG	0.473												
TRA2B	6434	broad.mit.edu	37	3	185641624	185641624	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:185641624A>G	uc003fpv.2	-	4	758	c.482T>C	c.(481-483)TTT>TCT	p.F161S	TRA2B_uc003fpt.2_RNA|TRA2B_uc003fpu.2_RNA|TRA2B_uc010hym.2_Missense_Mutation_p.F61S|TRA2B_uc003fpw.2_Missense_Mutation_p.F161S	NM_004593	NP_004584	P62995	TRA2B_HUMAN	splicing factor, arginine/serine-rich 10	161	RRM.				nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)	2						TACAAAGGCAAATCCTCTTGA	0.388												
ETV5	2119	broad.mit.edu	37	3	185769827	185769827	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:185769827T>C	uc003fpz.2	-	12	1550	c.1303A>G	c.(1303-1305)ATG>GTG	p.M435V	ETV5_uc003fpy.2_Missense_Mutation_p.M477V	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)	435	ETS.				cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			ACCTTCTGCATGATGCCCTTT	0.517			T	TMPRSS2|SCL45A3	Prostate 							
CRYGS	1427	broad.mit.edu	37	3	186256602	186256602	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:186256602A>G	uc003fqe.2	-	3	472	c.420T>C	c.(418-420)TAT>TAC	p.Y140Y	CRYGS_uc003fqf.2_Silent_p.Y140Y	NM_017541	NP_060011	P22914	CRBS_HUMAN	crystallin, gamma S	140	Beta/gamma crystallin 'Greek key' 4.						structural constituent of eye lens				0	all_cancers(143;3.75e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.5e-22)	GBM - Glioblastoma multiforme(93;0.0906)		TGGGTAGCTCATAGAAAATCC	0.532												
LEPREL1	55214	broad.mit.edu	37	3	189705372	189705372	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:189705372A>G	uc011bsk.1	-	5	1430	c.1042T>C	c.(1042-1044)TAC>CAC	p.Y348H	LEPREL1_uc003fsg.2_Missense_Mutation_p.Y167H	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	348					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CTCTCATAGTAATCCACATTG	0.413												
CLDN16	10686	broad.mit.edu	37	3	190126276	190126276	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:190126276T>C	uc003fsi.2	+	4	834	c.766T>C	c.(766-768)TGC>CGC	p.C256R	CLDN16_uc010hze.2_Intron	NM_006580	NP_006571	Q9Y5I7	CLD16_HUMAN	claudin 16	256	Helical; (Potential).				calcium-independent cell-cell adhesion|cellular metal ion homeostasis|excretion	integral to membrane|tight junction	identical protein binding|magnesium ion transmembrane transporter activity|structural molecule activity			ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0991)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.018)		TCTCACCTGCTGCTTATATCT	0.378												
C3orf59	151963	broad.mit.edu	37	3	192517221	192517221	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:192517221A>G	uc011bsp.1	-	2	751	c.430T>C	c.(430-432)TGC>CGC	p.C144R		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	144											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		CAAGAGTGGCACAAGGCTGAG	0.512												
ATP13A4	84239	broad.mit.edu	37	3	193183832	193183832	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:193183832A>G	uc003ftd.2	-	11	1362	c.1254T>C	c.(1252-1254)TGT>TGC	p.C418C	ATP13A4_uc003fte.1_Silent_p.C418C|ATP13A4_uc011bsr.1_Intron|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Silent_p.C124C	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	418	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		GCACATAGACACACAGAGTAT	0.438												
LSG1	55341	broad.mit.edu	37	3	194373752	194373752	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:194373752T>C	uc003fui.2	-	8	1194	c.879A>G	c.(877-879)TCA>TCG	p.S293S		NM_018385	NP_060855	Q9H089	LSG1_HUMAN	large subunit GTPase 1	293					nuclear export|protein transport	Cajal body|endoplasmic reticulum	GTP binding|hydrolase activity				0	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;7.55e-06)		TTTCACTAAGTGAAGGAGAAT	0.483												
LSG1	55341	broad.mit.edu	37	3	194387291	194387291	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:194387291A>G	uc003fui.2	-	3	552	c.237T>C	c.(235-237)AAT>AAC	p.N79N		NM_018385	NP_060855	Q9H089	LSG1_HUMAN	large subunit GTPase 1	79					nuclear export|protein transport	Cajal body|endoplasmic reticulum	GTP binding|hydrolase activity				0	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;7.55e-06)		CAAACTTAATATTAAGTTTCT	0.353												
ACAP2	23527	broad.mit.edu	37	3	195022799	195022799	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:195022799A>G	uc003fun.3	-	14	1462	c.1221T>C	c.(1219-1221)TGT>TGC	p.C407C		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	407	Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						TGCCAGGGATACACTGGACCC	0.507												
PCYT1A	5130	broad.mit.edu	37	3	195975110	195975110	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:195975110T>C	uc003fwg.2	-	5	475	c.302A>G	c.(301-303)AAC>AGC	p.N101S	PCYT1A_uc003fwh.2_Missense_Mutation_p.N101S	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	101	Catalytic (Potential).					cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	AGGGAAAAGGTTCTTCGCTTG	0.433												
UBXN7	26043	broad.mit.edu	37	3	196098870	196098870	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:196098870T>A	uc003fwm.3	-	6	587	c.512A>T	c.(511-513)AAC>ATC	p.N171I	UBXN7_uc003fwn.3_Missense_Mutation_p.N23I|UBXN7_uc010iae.2_Missense_Mutation_p.N9I	NM_015562	NP_056377	O94888	UBXN7_HUMAN	UBX domain containing 7	171							protein binding			ovary(2)|pancreas(1)	3						ATTTTGAATGTTTATCATCAG	0.393												
PIGX	54965	broad.mit.edu	37	3	196460765	196460765	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:196460765T>C	uc010iaj.2	+	7	981	c.700T>C	c.(700-702)TCC>CCC	p.S234P	PIGX_uc003fwx.3_Missense_Mutation_p.S216P|PIGX_uc011btx.1_RNA	NM_017861	NP_060331	Q8TBF5	PIGX_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	257	Cytoplasmic (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;1.08e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00322)		TGGCCATTTTTCCCTATAAGT	0.333												
PAK2	5062	broad.mit.edu	37	3	196539109	196539109	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:196539109A>G	uc003fwy.3	+	9	1115	c.793A>G	c.(793-795)ACT>GCT	p.T265A		NM_002577	NP_002568	Q13177	PAK2_HUMAN	p21-activated kinase 2	265	Protein kinase.				axon guidance|cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of apoptosis|regulation of defense response to virus by virus|regulation of growth|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|nucleus|perinuclear region of cytoplasm|plasma membrane	ATP binding|identical protein binding|protein kinase binding|protein serine/threonine kinase activity|protein tyrosine kinase activator activity			ovary(1)|lung(1)	2	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;6.38e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00405)		TACAGTTTTCACTGCTACTGA	0.408												
SENP5	205564	broad.mit.edu	37	3	196613083	196613083	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:196613083T>C	uc003fwz.3	+	2	1280	c.1031T>C	c.(1030-1032)TTC>TCC	p.F344S	SENP5_uc011bty.1_Missense_Mutation_p.F344S	NM_152699	NP_689912	Q96HI0	SENP5_HUMAN	SUMO1/sentrin specific peptidase 5	344					cell cycle|cell division|proteolysis	nucleolus	cysteine-type peptidase activity			breast(2)|lung(1)	3	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;3.14e-24)|all cancers(36;2.1e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.03e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.004)		GACGAAGCATTCCCTGACCAA	0.507												
NCBP2	22916	broad.mit.edu	37	3	196666226	196666226	+	Silent	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:196666226A>C	uc003fxd.1	-	2	246	c.156T>G	c.(154-156)ACT>ACG	p.T52T	NCBP2_uc003fxb.1_5'UTR|NCBP2_uc011btz.1_Silent_p.T34T|NCBP2_uc003fxc.1_RNA|NCBP2_uc003fxe.1_Intron|NCBP2_uc003fxf.2_Silent_p.T52T	NM_007362	NP_031388	P52298	NCBP2_HUMAN	nuclear cap binding protein subunit 2, 20kDa	52	RRM.				gene silencing by RNA|histone mRNA metabolic process|mRNA 3'-end processing|mRNA capping|mRNA export from nucleus|ncRNA metabolic process|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of RNA export from nucleus|positive regulation of viral transcription|regulation of translational initiation|snRNA export from nucleus|spliceosomal snRNP assembly|termination of RNA polymerase II transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	cytosol|mRNA cap binding complex|nucleoplasm	nucleotide binding|protein binding|RNA 7-methylguanosine cap binding				0	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;3.42e-24)|all cancers(36;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(49;4.13e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00551)		TTTGTTCTTCAGTTGTGTAAA	0.318												
MFI2	4241	broad.mit.edu	37	3	196743098	196743098	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:196743098T>C	uc003fxk.3	-	8	1156	c.1043A>G	c.(1042-1044)TAC>TGC	p.Y348C		NM_005929	NP_005920	P08582	TRFM_HUMAN	melanoma-associated antigen p97 isoform 1	348	Transferrin-like 1.				cellular iron ion homeostasis|iron ion transport	anchored to membrane|extracellular region|integral to plasma membrane	ferric iron binding|protein binding				0	all_cancers(143;3.95e-09)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.55e-24)|all cancers(36;2.87e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00536)		GGCGTGCAGGTACTCATGGCC	0.602												
KIAA0226	9711	broad.mit.edu	37	3	197420641	197420641	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:197420641C>T	uc003fyc.2	-	11	1914	c.1731G>A	c.(1729-1731)TCG>TCA	p.S577S	KIAA0226_uc003fyd.3_Silent_p.S532S|KIAA0226_uc003fye.1_Silent_p.S284S|KIAA0226_uc003fyf.2_3'UTR	NM_014687	NP_055502	Q92622	RUBIC_HUMAN	hypothetical protein LOC9711 isoform 2.	577	Ser-rich.				autophagy|endocytosis|negative regulation of autophagy|negative regulation of endocytosis	early endosome|late endosome|lysosome	protein binding				0	all_cancers(143;8.26e-10)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.0446)		AGAGCTGTGCCGAATCACGTG	0.433												
KIAA0226	9711	broad.mit.edu	37	3	197430456	197430456	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:197430456T>C	uc003fyc.2	-	5	716	c.533A>G	c.(532-534)AAC>AGC	p.N178S	KIAA0226_uc003fyd.3_Missense_Mutation_p.N118S|KIAA0226_uc003fye.1_5'Flank|KIAA0226_uc003fyf.2_Missense_Mutation_p.N11S|KIAA0226_uc003fyg.2_Missense_Mutation_p.N171S	NM_014687	NP_055502	Q92622	RUBIC_HUMAN	hypothetical protein LOC9711 isoform 2.	178	RUN.				autophagy|endocytosis|negative regulation of autophagy|negative regulation of endocytosis	early endosome|late endosome|lysosome	protein binding				0	all_cancers(143;8.26e-10)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.0446)		GCGGGGGTTGTTCTGTTCCAC	0.567												
LMLN	89782	broad.mit.edu	37	3	197701945	197701945	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:197701945T>C	uc011buo.1	+	3	370	c.348_splice	c.e3+2	p.K116_splice	LMLN_uc003fyt.2_Splice_Site_p.K64_splice|LMLN_uc010iar.2_Splice_Site_p.K116_splice|LMLN_uc010ias.2_Splice_Site_p.K64_splice|LMLN_uc003fyu.2_Splice_Site	NM_033029	NP_149018	Q96KR4	LMLN_HUMAN	leishmanolysin-like isoform 2						cell adhesion|cell division|mitosis|proteolysis	cytoplasm|membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;9.84e-24)|all cancers(36;3.18e-22)|OV - Ovarian serous cystadenocarcinoma(49;5.35e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.111)		CTTGTAAAGGTATGTAATAAA	0.199												
ZNF595	152687	broad.mit.edu	37	4	86073	86073	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:86073A>G	uc003fzv.1	+	5	834	c.678A>G	c.(676-678)AAA>AAG	p.K226K	ZNF595_uc003fzu.1_Intron|ZNF718_uc003fzt.3_Intron|ZNF595_uc011bus.1_5'UTR|ZNF595_uc011but.1_5'UTR	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	226					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		CTGGAGAGAAACCCTACACAT	0.403												
ZNF721	170960	broad.mit.edu	37	4	436007	436007	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:436007T>A	uc003gag.2	-	3	2940	c.2249A>T	c.(2248-2250)GAT>GTT	p.D750V	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.D782V|ZNF721_uc010ibe.2_Missense_Mutation_p.D738V	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	750						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GTAGAGTTTATCTCCAGTATG	0.378												
GAK	2580	broad.mit.edu	37	4	870373	870373	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:870373T>A	uc003gbm.3	-	18	2198	c.1999A>T	c.(1999-2001)ATT>TTT	p.I667F	GAK_uc003gbn.3_Missense_Mutation_p.I588F|GAK_uc010ibk.1_Missense_Mutation_p.I561F|GAK_uc003gbl.3_Missense_Mutation_p.I531F	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	667	C2 tensin-type.				cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		TGGAACTGAATCTGGAACATC	0.552												
CTBP1	1487	broad.mit.edu	37	4	1207327	1207327	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:1207327G>A	uc003gcv.1	-	7	1125	c.960C>T	c.(958-960)AGC>AGT	p.S320S	uc003gcs.1_Intron|CTBP1_uc003gct.1_Silent_p.S301S|CTBP1_uc003gcu.1_Silent_p.S309S|CTBP1_uc003gcw.2_5'UTR	NM_001328	NP_001319	Q13363	CTBP1_HUMAN	C-terminal binding protein 1 isoform 1	320	Interaction with GLIS2 2 (By similarity).				interspecies interaction between organisms|negative regulation of cell proliferation|negative regulation of histone H4 acetylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone deacetylation|protein phosphorylation|regulation of cell cycle|regulation of transcription by chromatin organization|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|viral genome replication|white fat cell differentiation	cytoplasm|transcriptional repressor complex	NAD binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein C-terminus binding|protein domain specific binding|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.00818)	Colorectal(103;0.2)		ATGCCTGCTCGCTGTACCATG	0.652												
SLBP	7884	broad.mit.edu	37	4	1701386	1701386	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:1701386A>G	uc003gdi.1	-	5	499	c.384T>C	c.(382-384)TTT>TTC	p.F128F	SLBP_uc010ibx.1_Silent_p.F135F|SLBP_uc003gdj.1_Silent_p.F108F|SLBP_uc003gdk.1_Silent_p.F89F|SLBP_uc011bvf.1_Silent_p.F93F|SLBP_uc003gdl.1_Silent_p.F45F	NM_006527	NP_006518	Q14493	SLBP_HUMAN	stem-loop (histone) binding protein	128					DNA replication involved in S phase|histone mRNA 3'-end processing|mRNA export from nucleus|regulation of S phase|termination of RNA polymerase II transcription	cytosol|histone pre-mRNA 3'end processing complex|nucleoplasm	histone pre-mRNA DCP binding|histone pre-mRNA stem-loop binding|protein binding				0		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.0055)			CATCTGTCTCAAAGTCAGCCG	0.393												
HAUS3	79441	broad.mit.edu	37	4	2233811	2233811	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:2233811T>A	uc003ges.1	-	5	1885	c.1655A>T	c.(1654-1656)GAT>GTT	p.D552V	POLN_uc003ger.2_5'Flank|POLN_uc011bvi.1_Intron|HAUS3_uc011bvj.1_Intron|HAUS3_uc003get.1_Missense_Mutation_p.D552V	NM_024511	NP_078787	Q68CZ6	HAUS3_HUMAN	HAUS augmin-like complex, subunit 3	552					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle				large_intestine(2)|breast(2)	4						TGTCTTCACATCAGCAAGAAT	0.264												
HTT	3064	broad.mit.edu	37	4	3109036	3109036	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:3109036G>A	uc011bvq.1	+	7	784	c.639G>A	c.(637-639)CCG>CCA	p.P213P		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	211	HEAT 1.				establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		ACCTTCTGCCGTGCCTGACTC	0.473												
HTT	3064	broad.mit.edu	37	4	3190708	3190708	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:3190708A>C	uc011bvq.1	+	41	5407	c.5262A>C	c.(5260-5262)TTA>TTC	p.L1754F		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1752					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GTATTCTTTTAGAAGACATTG	0.383												
HTT	3064	broad.mit.edu	37	4	3219639	3219639	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:3219639G>A	uc011bvq.1	+	53	7353	c.7208G>A	c.(7207-7209)CGC>CAC	p.R2403H		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2401	Nuclear export signal (By similarity).				establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		AGCCTGGCCCGCCTGCCCCTT	0.582												
RGS12	6002	broad.mit.edu	37	4	3319065	3319065	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:3319065T>C	uc003ggw.2	+	2	2072	c.1168T>C	c.(1168-1170)TAC>CAC	p.Y390H	RGS12_uc003ggu.2_Missense_Mutation_p.Y390H|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Missense_Mutation_p.Y390H|RGS12_uc003ggx.1_Missense_Mutation_p.Y390H	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	390						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CTCTGTCCTGTACCGAGACAT	0.622												
STK32B	55351	broad.mit.edu	37	4	5461855	5461855	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:5461855G>A	uc003gih.1	+	9	873	c.809G>A	c.(808-810)CGC>CAC	p.R270H	STK32B_uc010ida.1_Missense_Mutation_p.R223H	NM_018401	NP_060871	Q9NY57	ST32B_HUMAN	serine/threonine kinase 32B	270	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						CCTGAGAGCCGCGTGTCCAGC	0.562											OREG0016061	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
C4orf6	10141	broad.mit.edu	37	4	5527092	5527092	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:5527092A>G	uc003gii.2	+	1	210	c.35A>G	c.(34-36)AAT>AGT	p.N12S		NM_005750	NP_005741	Q99440	CD006_HUMAN	chromosome 4 open reading frame 6	12					nervous system development						0						aagactcacaattcaaagaac	0.04												
EVC2	132884	broad.mit.edu	37	4	5578085	5578085	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:5578085C>T	uc003gij.2	-	18	3208	c.3154G>A	c.(3154-3156)GCC>ACC	p.A1052T	EVC2_uc011bwb.1_Missense_Mutation_p.A492T|EVC2_uc003gik.2_Missense_Mutation_p.A972T	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	1052	Potential.					integral to membrane				large_intestine(3)|ovary(2)	5						GGCCCATCGGCCACCCACTGC	0.622												
EVC	2121	broad.mit.edu	37	4	5731079	5731079	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:5731079A>G	uc003gil.1	+	3	530	c.346A>G	c.(346-348)AAG>GAG	p.K116E	EVC_uc003gim.1_RNA	NM_153717	NP_714928	P57679	EVC_HUMAN	Ellis van Creveld syndrome protein	116					muscle organ development	integral to membrane				ovary(1)|skin(1)	2		Myeloproliferative disorder(84;0.117)				ATTCGCCCTGAAGGCCAAAGT	0.488												
CRMP1	1400	broad.mit.edu	37	4	5857879	5857879	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:5857879G>A	uc003gip.2	-	5	570	c.469C>T	c.(469-471)CAG>TAG	p.Q157*	CRMP1_uc003gin.1_Nonsense_Mutation_p.Q69*|CRMP1_uc003giq.2_Nonsense_Mutation_p.Q157*|CRMP1_uc003gir.2_Nonsense_Mutation_p.Q152*|CRMP1_uc003gis.2_Nonsense_Mutation_p.Q271*	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	157					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		CCTTTGTCCTGCACCAGCACC	0.527												
MAN2B2	23324	broad.mit.edu	37	4	6610923	6610923	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:6610923A>G	uc003gjf.1	+	12	1940	c.1904A>G	c.(1903-1905)TAC>TGC	p.Y635C	MAN2B2_uc003gje.1_Missense_Mutation_p.Y635C|MAN2B2_uc011bwf.1_Missense_Mutation_p.Y584C	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	635					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						TCCGATAACTACCTGTTCACA	0.577												
CCDC96	257236	broad.mit.edu	37	4	7043037	7043037	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:7043037C>T	uc003gjv.2	-	1	1692	c.1629G>A	c.(1627-1629)AGG>AGA	p.R543R	TADA2B_uc003gjw.3_5'Flank|TADA2B_uc010idi.2_5'Flank	NM_153376	NP_699207	Q2M329	CCD96_HUMAN	coiled-coil domain containing 96	543											0						TGATCTTCTGCCTCACGCCTC	0.537												
GRPEL1	80273	broad.mit.edu	37	4	7062879	7062879	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:7062879T>C	uc003gjy.1	-	4	405	c.364A>G	c.(364-366)ACA>GCA	p.T122A	GRPEL1_uc003gjz.1_3'UTR	NM_025196	NP_079472	Q9HAV7	GRPE1_HUMAN	GrpE-like 1, mitochondrial precursor	122					protein folding|protein import into mitochondrial matrix	mitochondrial matrix	adenyl-nucleotide exchange factor activity|chaperone binding|protein homodimerization activity|unfolded protein binding				0						ACACACTGTGTTGCCTTCTCC	0.468												
AFAP1	60312	broad.mit.edu	37	4	7795427	7795427	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:7795427T>C	uc003gkg.1	-	11	1666	c.1393A>G	c.(1393-1395)ACA>GCA	p.T465A	AFAP1_uc011bwk.1_Missense_Mutation_p.T465A	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	465				T -> A (in Ref. 2; BAF83496).		actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						TGTTTGGCTGTCTGAATGACA	0.468												
SH3TC1	54436	broad.mit.edu	37	4	8229571	8229571	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:8229571A>G	uc003gkv.3	+	12	2251	c.2150A>G	c.(2149-2151)TAC>TGC	p.Y717C	SH3TC1_uc003gkw.3_Missense_Mutation_p.Y641C|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	717							binding			large_intestine(2)|pancreas(1)	3						GCTGACATCTACAGCCGCAAG	0.652												
SLC2A9	56606	broad.mit.edu	37	4	9836555	9836555	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:9836555C>T	uc003gmc.2	-	11	1430	c.1369G>A	c.(1369-1371)GTC>ATC	p.V457I	SLC2A9_uc003gmd.2_Missense_Mutation_p.V428I	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	457	Helical; Name=11; (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						AGCCAGTTGACGGTGCCTGCA	0.532												
ZNF518B	85460	broad.mit.edu	37	4	10445841	10445841	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:10445841A>G	uc003gmn.2	-	3	2599	c.2112T>C	c.(2110-2112)TCT>TCC	p.S704S		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	704					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						GAATACCTTCAGAGGTAGCTT	0.458												
ZNF518B	85460	broad.mit.edu	37	4	10446888	10446888	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:10446888A>G	uc003gmn.2	-	3	1552	c.1065T>C	c.(1063-1065)GGT>GGC	p.G355G		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	355					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						GCTGCTGTGTACCATTGACAA	0.448												
BOD1L	259282	broad.mit.edu	37	4	13571645	13571645	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:13571645G>A	uc003gmz.1	-	26	9263	c.9146C>T	c.(9145-9147)GCG>GTG	p.A3049V		NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	3049							DNA binding			ovary(5)|breast(1)	6						TTATCGCTTCGCTTTTTTCAC	0.552												
BOD1L	259282	broad.mit.edu	37	4	13601895	13601895	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:13601895T>A	uc003gmz.1	-	10	6746	c.6629A>T	c.(6628-6630)AAG>ATG	p.K2210M	BOD1L_uc010idr.1_Missense_Mutation_p.K1547M	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	2210							DNA binding			ovary(5)|breast(1)	6						CTTCTCCTCCTTGCTGGTTGA	0.512												
BOD1L	259282	broad.mit.edu	37	4	13602539	13602539	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:13602539T>C	uc003gmz.1	-	10	6102	c.5985A>G	c.(5983-5985)GAA>GAG	p.E1995E	BOD1L_uc010idr.1_Silent_p.E1332E	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1995							DNA binding			ovary(5)|breast(1)	6						TAGTGGTATCTTCAACTTTTT	0.468												
CC2D2A	57545	broad.mit.edu	37	4	15511838	15511838	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:15511838C>T	uc010idv.2	+	8	760	c.515C>T	c.(514-516)GCA>GTA	p.A172V	CC2D2A_uc003gnx.2_Missense_Mutation_p.A123V|CC2D2A_uc003gnu.2_Missense_Mutation_p.A172V|CC2D2A_uc003gnv.2_Missense_Mutation_p.A172V	NM_001080522	NP_001073991	Q9P2K1	C2D2A_HUMAN	coiled-coil and C2 domain containing 2A isoform	172					cell projection organization	cilium|microtubule basal body				pancreas(2)|ovary(1)	3						CATGATTCTGCACGAAAAATC	0.348												
CD38	952	broad.mit.edu	37	4	15780076	15780076	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:15780076A>G	uc011bxc.1	+	1	146	c.39A>G	c.(37-39)AAA>AAG	p.K13K	CD38_uc003goj.1_Silent_p.K13K|CD38_uc003gol.1_Silent_p.K13K	NM_001775	NP_001766	P28907	CD38_HUMAN	CD38 antigen	13	Cytoplasmic (Potential).				B cell receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of apoptosis|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of transcription, DNA-dependent|response to drug	integral to membrane|plasma membrane	binding|NAD+ nucleosidase activity|receptor activity			ovary(2)	2						CCGGGGACAAACCCTGCTGCC	0.652												
TAPT1	202018	broad.mit.edu	37	4	16215413	16215413	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:16215413C>T	uc010ied.1	-	2	389	c.308G>A	c.(307-309)CGA>CAA	p.R103Q	TAPT1_uc011bxe.1_Intron|TAPT1_uc003gow.3_Intron	NM_153365	NP_699196	Q6NXT6	TAPT1_HUMAN	transmembrane anterior posterior transformation	103						integral to membrane	growth hormone-releasing hormone receptor activity				0						TCTTGGTATTCGCAAACAAGT	0.338												
GPR125	166647	broad.mit.edu	37	4	22425958	22425958	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:22425958A>G	uc003gqm.1	-	11	1726	c.1461T>C	c.(1459-1461)GTT>GTC	p.V487V	GPR125_uc010ieo.1_Silent_p.V361V|GPR125_uc003gqn.1_Silent_p.V261V|GPR125_uc003gqo.2_Silent_p.V487V	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	487	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				TTGCAATGTCAACCATCACGT	0.453												
GPR125	166647	broad.mit.edu	37	4	22449096	22449096	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:22449096C>A	uc003gqm.1	-	5	777	c.512G>T	c.(511-513)GGA>GTA	p.G171V	GPR125_uc010ieo.1_Missense_Mutation_p.G45V|GPR125_uc003gqo.2_Missense_Mutation_p.G171V	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	171	Extracellular (Potential).|LRR 4.				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				ATCAAAAGTTCCTTGAGATAA	0.254												
GBA3	57733	broad.mit.edu	37	4	22750561	22750561	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:22750561A>G	uc003gqp.3	+	4	1276	c.1185A>G	c.(1183-1185)CAA>CAG	p.Q395Q	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Silent_p.Q396Q	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	395					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						ATTTCAGACAAACATTTCAGG	0.373												
CCDC149	91050	broad.mit.edu	37	4	24875302	24875302	+	Splice_Site	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:24875302C>T	uc011bxr.1	-	4	408	c.264_splice	c.e4+1	p.Q88_splice	CCDC149_uc003grc.2_Splice_Site_p.Q88_splice|CCDC149_uc003grb.2_Splice_Site|CCDC149_uc003grd.2_Splice_Site_p.Q88_splice|CCDC149_uc003gre.2_Splice_Site_p.Q33_splice	NM_173463	NP_775734	B4DZG3	B4DZG3_HUMAN	coiled-coil domain containing 149 isoform 1												0		Breast(46;0.173)				ATAAGTCTTACCTGTTTCCTT	0.348												
SLC34A2	10568	broad.mit.edu	37	4	25671295	25671295	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:25671295A>T	uc003grr.2	+	7	743	c.662A>T	c.(661-663)GAC>GTC	p.D221V	SLC34A2_uc003grs.2_Missense_Mutation_p.D220V|SLC34A2_uc010iev.2_Missense_Mutation_p.D220V	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	221	Helical; Name=M3; (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				ACTGTCCATGACTTCTTCAAC	0.537												
SLC34A2	10568	broad.mit.edu	37	4	25677873	25677873	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:25677873T>A	uc003grr.2	+	13	1656	c.1575T>A	c.(1573-1575)TAT>TAA	p.Y525*	SLC34A2_uc003grs.2_Nonsense_Mutation_p.Y524*|SLC34A2_uc010iev.2_Nonsense_Mutation_p.Y524*	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	525	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				CTGCCAAGTATCGCTGGTTCG	0.592												
SEL1L3	23231	broad.mit.edu	37	4	25806334	25806334	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:25806334C>T	uc003gru.3	-	10	1757	c.1605G>A	c.(1603-1605)GGG>GGA	p.G535G	SEL1L3_uc003grv.2_5'UTR	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	535						integral to membrane	binding				0						CAAATATCTTCCCACCGATTT	0.418												
PCDH7	5099	broad.mit.edu	37	4	30725028	30725028	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:30725028A>G	uc003gsk.1	+	1	2992	c.1984A>G	c.(1984-1986)ACC>GCC	p.T662A	PCDH7_uc011bxw.1_Missense_Mutation_p.T615A|PCDH7_uc011bxx.1_Missense_Mutation_p.T662A	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	662	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						GGGGATGGTCACCGTGATGGA	0.448												
TBC1D1	23216	broad.mit.edu	37	4	38023271	38023271	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:38023271A>G	uc003gtb.2	+	6	1485	c.1142A>G	c.(1141-1143)AAG>AGG	p.K381R	TBC1D1_uc011byd.1_Missense_Mutation_p.K381R|TBC1D1_uc010ifd.2_Missense_Mutation_p.K128R|TBC1D1_uc011byf.1_Missense_Mutation_p.K252R	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	381	PID.					nucleus	Rab GTPase activator activity			ovary(1)	1						CAGACAGCTAAGGCGCCAGCC	0.527												
KLB	152831	broad.mit.edu	37	4	39409016	39409016	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:39409016T>C	uc003gua.2	+	1	544	c.447T>C	c.(445-447)TAT>TAC	p.Y149Y	KLB_uc011byj.1_Silent_p.Y149Y	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	149	Extracellular (Potential).|Glycosyl hydrolase-1 1.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						TTTCTTTTTATCAATTTTCAA	0.408												
UBE2K	3093	broad.mit.edu	37	4	39779998	39779998	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:39779998T>G	uc003guu.3	+	7	831	c.547T>G	c.(547-549)TTG>GTG	p.L183V	UBE2K_uc003gus.3_Missense_Mutation_p.L140V|UBE2K_uc003gut.3_Missense_Mutation_p.L132V|UBE2K_uc010ifn.2_RNA|UBE2K_uc011byq.1_Missense_Mutation_p.L122V|UBE2K_uc003guq.3_Missense_Mutation_p.L80V	NM_005339	NP_005330	P61086	UBE2K_HUMAN	ubiquitin-conjugating enzyme E2K isoform 1	183	UBA.				protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|ubiquitin protein ligase binding|ubiquitin-ubiquitin ligase activity			ovary(1)	1						AATAGTGGCCTTGTCTTCAAA	0.393												
N4BP2	55728	broad.mit.edu	37	4	40122482	40122482	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:40122482A>G	uc003guy.3	+	9	3089	c.2751A>G	c.(2749-2751)AAA>AAG	p.K917K	N4BP2_uc010ifq.2_Silent_p.K837K|N4BP2_uc010ifr.2_Silent_p.K837K	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	917						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						CAAATGACAAAATGAATGAAA	0.413												
CHRNA9	55584	broad.mit.edu	37	4	40356386	40356386	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:40356386A>G	uc003gva.1	+	5	1305	c.1289A>G	c.(1288-1290)TAC>TGC	p.Y430C		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	430	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	AATATTGAGTACATCGCCAAG	0.488												
BEND4	389206	broad.mit.edu	37	4	42119623	42119623	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:42119623T>C	uc003gwn.2	-	6	2097	c.1517A>G	c.(1516-1518)AAC>AGC	p.N506S	BEND4_uc003gwm.2_3'UTR	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	506											0						TGAGCCACCGTTGTGCAGGAA	0.537												
GRXCR1	389207	broad.mit.edu	37	4	42895333	42895333	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:42895333G>T	uc003gwt.2	+	1	50	c.50G>T	c.(49-51)CGG>CTG	p.R17L		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	17					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						CGGAAAGTCCGGTTTCGGATC	0.507												
YIPF7	285525	broad.mit.edu	37	4	44638028	44638028	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:44638028C>T	uc010ifx.1	-	3	280	c.263G>A	c.(262-264)GGA>GAA	p.G88E	YIPF7_uc010ify.1_Missense_Mutation_p.G88E	NM_182592	NP_872398	Q8N8F6	YIPF7_HUMAN	Yip1 domain family, member 7	88						endoplasmic reticulum membrane|integral to membrane					0						AAAAAATTGTCCTGCGTAACC	0.408												
NIPAL1	152519	broad.mit.edu	37	4	48036924	48036924	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:48036924A>G	uc003gxw.2	+	5	554	c.488A>G	c.(487-489)AAC>AGC	p.N163S		NM_207330	NP_997213	Q6NVV3	NIPA3_HUMAN	NIPA-like domain containing 1	163	Cytoplasmic (Potential).					integral to membrane					0						TACTTTTTAAACGAGCACTTG	0.383												
TEC	7006	broad.mit.edu	37	4	48173385	48173385	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:48173385C>A	uc003gxz.2	-	4	416	c.325G>T	c.(325-327)GAA>TAA	p.E109*		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	109	PH.				intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						TGAGTTTTACCTTCTTTTAAC	0.303												
SLAIN2	57606	broad.mit.edu	37	4	48384711	48384711	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:48384711A>G	uc003gya.3	+	5	1133	c.989A>G	c.(988-990)AAT>AGT	p.N330S	SLAIN2_uc003gyb.1_5'UTR	NM_020846	NP_065897	Q9P270	SLAI2_HUMAN	SLAIN motif family, member 2	330						centrosome					0						GAAGATGACAATATGCATCAT	0.453												
FRYL	285527	broad.mit.edu	37	4	48530056	48530056	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:48530056T>C	uc003gyh.1	-	52	7677	c.7072A>G	c.(7072-7074)ACA>GCA	p.T2358A	FRYL_uc003gyg.1_Missense_Mutation_p.T1054A|FRYL_uc003gyi.1_Missense_Mutation_p.T1246A|FRYL_uc003gyj.1_Missense_Mutation_p.T653A	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	2358					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						TTTTCTCTTGTTCTTCGCTAA	0.358												
FRYL	285527	broad.mit.edu	37	4	48563635	48563635	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:48563635A>G	uc003gyh.1	-	33	4320	c.3715T>C	c.(3715-3717)TTT>CTT	p.F1239L	FRYL_uc003gyk.2_Missense_Mutation_p.F1239L|FRYL_uc003gyi.1_Missense_Mutation_p.F128L	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	1239					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						GCATAGCGAAACATCTTCGGT	0.348												
CWH43	80157	broad.mit.edu	37	4	48990684	48990684	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:48990684T>C	uc003gyv.2	+	2	416	c.234T>C	c.(232-234)ATT>ATC	p.I78I	CWH43_uc011bzl.1_Silent_p.I51I	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	78					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						TAATCACTATTGGTAAGATTT	0.279												
CWH43	80157	broad.mit.edu	37	4	49046852	49046852	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:49046852G>A	uc003gyv.2	+	14	2035	c.1853G>A	c.(1852-1854)CGA>CAA	p.R618Q	CWH43_uc011bzl.1_Missense_Mutation_p.R591Q	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	618	Required for function in lipid remodeling (By similarity).				GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						ATTATGTATCGAGGGCTGATC	0.368												
USP46	64854	broad.mit.edu	37	4	53468063	53468063	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:53468063G>A	uc003gzn.2	-	7	1065	c.880C>T	c.(880-882)CGC>TGC	p.R294C	USP46_uc003gzm.3_Missense_Mutation_p.R287C|USP46_uc011bzr.1_Missense_Mutation_p.R271C|USP46_uc011bzs.1_Missense_Mutation_p.R178C	NM_022832	NP_073743	P62068	UBP46_HUMAN	ubiquitin specific peptidase 46 isoform 1	294					behavior|protein deubiquitination|regulation of synaptic transmission, GABAergic|ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(32;0.0295)			TCATACATGCGGTCCAGGTTC	0.537												
SCFD2	152579	broad.mit.edu	37	4	54231560	54231560	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:54231560A>G	uc003gzu.2	-	1	683	c.549T>C	c.(547-549)GAT>GAC	p.D183D	SCFD2_uc010igm.2_Silent_p.D183D	NM_152540	NP_689753	Q8WU76	SCFD2_HUMAN	sec1 family domain containing 2	183					protein transport|vesicle docking involved in exocytosis					ovary(2)|pancreas(1)	3			GBM - Glioblastoma multiforme(3;1.07e-26)|LUSC - Lung squamous cell carcinoma(32;0.0134)			GGAGGTGCACATCCTGGGGTA	0.577												
PDGFRA	5156	broad.mit.edu	37	4	54245411	54245411	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:54245411G>A	uc003haa.2	+	3	336	c.150G>A	c.(148-150)AGG>AGA	p.R50R	FIP1L1_uc003gzx.3_Silent_p.R35R|FIP1L1_uc011bzt.1_Silent_p.R50R|FIP1L1_uc003gzy.2_Silent_p.R50R|FIP1L1_uc011bzu.1_Silent_p.R35R|FIP1L1_uc003gzz.2_Silent_p.R35R|FIP1L1_uc003hab.2_Silent_p.R38R	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	Error:Variant_position_missing_in_P16234_after_alignment					cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	AAGTTGAAAGGCCAGAAGAAG	0.269			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)		
SRD5A3	79644	broad.mit.edu	37	4	56236243	56236243	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:56236243A>G	uc003hau.2	+	5	1037	c.942A>G	c.(940-942)CTA>CTG	p.L314L	uc003hav.1_Intron|uc003haw.1_Intron	NM_024592	NP_078868	Q9H8P0	PORED_HUMAN	steroid 5 alpha-reductase 3	314	Cytoplasmic (Potential).				androgen biosynthetic process|dolichol metabolic process|dolichol-linked oligosaccharide biosynthetic process|polyprenol catabolic process	endoplasmic reticulum membrane|integral to membrane	3-oxo-5-alpha-steroid 4-dehydrogenase activity|oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor				0	all_cancers(7;0.0308)|all_lung(4;0.00195)|Lung NSC(11;0.00431)|all_epithelial(27;0.0425)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.0179)			AAGCTTTCCTACCATTTTTGT	0.413												
EXOC1	55763	broad.mit.edu	37	4	56763012	56763012	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:56763012C>T	uc003hbe.1	+	16	2241	c.2083C>T	c.(2083-2085)CGT>TGT	p.R695C	EXOC1_uc003hbf.1_Missense_Mutation_p.R695C|EXOC1_uc003hbg.1_Missense_Mutation_p.R680C	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	695					exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					TGCTGAGCGTCGTGGAGACCT	0.333												
CEP135	9662	broad.mit.edu	37	4	56841097	56841097	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:56841097G>A	uc003hbi.2	+	11	1669	c.1435G>A	c.(1435-1437)GCA>ACA	p.A479T	CEP135_uc003hbj.2_Missense_Mutation_p.A185T	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	479	Potential.				centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					AAGTTATAGCGCACGTGAAAA	0.323												
AASDH	132949	broad.mit.edu	37	4	57220334	57220334	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:57220334T>C	uc003hbn.2	-	8	1407	c.1254A>G	c.(1252-1254)GTA>GTG	p.V418V	AASDH_uc010ihb.2_5'UTR|AASDH_uc011caa.1_Silent_p.V265V|AASDH_uc003hbo.2_Silent_p.V318V|AASDH_uc011cab.1_Intron|AASDH_uc010ihc.2_Silent_p.V418V|AASDH_uc003hbp.2_Silent_p.V418V	NM_181806	NP_861522	Q4L235	ACSF4_HUMAN	aminoadipate-semialdehyde dehydrogenase	418					fatty acid metabolic process		acid-thiol ligase activity|acyl carrier activity|ATP binding|cofactor binding			ovary(4)	4	Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.0017)				TGCCAAGTGGTACTGTCACTT	0.393												
REST	5978	broad.mit.edu	37	4	57777024	57777024	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:57777024G>A	uc003hch.2	+	2	567	c.220G>A	c.(220-222)GCA>ACA	p.A74T	REST_uc003hci.2_Missense_Mutation_p.A74T|REST_uc003hcj.1_Missense_Mutation_p.A74T|REST_uc010ihf.2_5'UTR	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	74	Interaction with SIN3A.				cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding			skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					AAGACAGATGGCAGAACTGAT	0.473												
REST	5978	broad.mit.edu	37	4	57777250	57777250	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:57777250A>G	uc003hch.2	+	2	793	c.446A>G	c.(445-447)GAC>GGC	p.D149G	REST_uc003hci.2_Missense_Mutation_p.D149G|REST_uc003hcj.1_Missense_Mutation_p.D149G|REST_uc010ihf.2_5'UTR	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	149					cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding			skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					GGAGCGGAGGACAAAGGCAAG	0.468												
LPHN3	23284	broad.mit.edu	37	4	62758502	62758502	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:62758502A>G	uc010ihh.2	+	7	1578	c.1405A>G	c.(1405-1407)ACC>GCC	p.T469A	LPHN3_uc003hcq.3_Missense_Mutation_p.T469A|LPHN3_uc003hcs.1_Missense_Mutation_p.T298A	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	469	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						GAGTACTAGTACCCCATCTCC	0.547												
EPHA5	2044	broad.mit.edu	37	4	66197715	66197715	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:66197715T>G	uc003hcy.2	-	17	3177	c.2984A>C	c.(2983-2985)GAC>GCC	p.D995A	EPHA5_uc003hcx.2_Missense_Mutation_p.D927A|EPHA5_uc003hcz.2_Missense_Mutation_p.D973A|EPHA5_uc011cah.1_Missense_Mutation_p.D996A|EPHA5_uc011cai.1_Missense_Mutation_p.D974A|EPHA5_uc003hda.2_Missense_Mutation_p.D996A	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	995	Cytoplasmic (Potential).|SAM.				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						AGCCACAGCGTCCATTGAACT	0.423										TSP Lung(17;0.13)		
YTHDC1	91746	broad.mit.edu	37	4	69202829	69202829	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:69202829G>A	uc003hdx.2	-	4	1152	c.799C>T	c.(799-801)CGA>TGA	p.R267*	YTHDC1_uc003hdy.2_Nonsense_Mutation_p.R267*	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	267										upper_aerodigestive_tract(1)|ovary(1)	2						GCCTCACTTCGAGTGTCATAA	0.333												
UGT2B10	7365	broad.mit.edu	37	4	69682128	69682128	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:69682128T>C	uc003hee.2	+	1	416	c.391T>C	c.(391-393)TCA>CCA	p.S131P	UGT2B10_uc011cam.1_Missense_Mutation_p.S131P	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	131					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						AGATGTAGTTTCAAATAAGAA	0.323												
UGT2B10	7365	broad.mit.edu	37	4	69696589	69696589	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:69696589A>G	uc003hee.2	+	6	1604	c.1579A>G	c.(1579-1581)AGG>GGG	p.R527G	UGT2B10_uc011cam.1_Missense_Mutation_p.R443G	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	527					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GAAGGGAAAAAGGGATTAGTT	0.373												
UGT2A3	79799	broad.mit.edu	37	4	69817054	69817054	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:69817054T>C	uc003hef.2	-	1	456	c.425A>G	c.(424-426)AAC>AGC	p.N142S	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	142	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TACATCGTAGTTGGTTTCCTG	0.378												
C4orf35	85438	broad.mit.edu	37	4	71201539	71201539	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:71201539T>C	uc003hff.2	+	1	869	c.783T>C	c.(781-783)GAT>GAC	p.D261D		NM_033122	NP_149113	Q96KC9	CABS1_HUMAN	testis development protein NYD-SP26	261						flagellum	calcium ion binding				0		all_hematologic(202;0.196)				CTGACTCTGATGAGAAGTTTA	0.403												
MUC7	4589	broad.mit.edu	37	4	71346984	71346984	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:71346984A>G	uc011cat.1	+	4	811	c.523A>G	c.(523-525)ACT>GCT	p.T175A	MUC7_uc011cau.1_Missense_Mutation_p.T175A|MUC7_uc003hfj.2_Missense_Mutation_p.T175A|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	175	1.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ACCTTCTGCAACTACACCAGC	0.532												
ADAMTS3	9508	broad.mit.edu	37	4	73205379	73205379	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:73205379A>G	uc003hgk.1	-	5	730	c.693T>C	c.(691-693)GGT>GGC	p.G231G		NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	231					collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CATAAACAGTACCTAGATCAT	0.463												
ANKRD17	26057	broad.mit.edu	37	4	73981536	73981536	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:73981536A>G	uc003hgp.2	-	23	4401	c.4284_splice	c.e23+1	p.K1428_splice	ANKRD17_uc003hgo.2_Splice_Site_p.K1315_splice|ANKRD17_uc003hgq.2_Splice_Site_p.K1177_splice|ANKRD17_uc003hgr.2_Splice_Site_p.K1427_splice|ANKRD17_uc011cbd.1_Splice_Site_p.K993_splice	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a						interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			ACAACATATTACCTTATCAGT	0.363												
ANKRD17	26057	broad.mit.edu	37	4	74008406	74008406	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:74008406A>G	uc003hgp.2	-	12	2153	c.2036T>C	c.(2035-2037)GTG>GCG	p.V679A	ANKRD17_uc003hgo.2_Missense_Mutation_p.V566A|ANKRD17_uc003hgq.2_Missense_Mutation_p.V679A|ANKRD17_uc003hgr.2_Missense_Mutation_p.V679A|ANKRD17_uc011cbd.1_Missense_Mutation_p.V244A	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	679	ANK 14.				interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TAGTTCCACCACTGCCAGATG	0.433												
ALB	213	broad.mit.edu	37	4	74279175	74279175	+	Silent	SNP	G	G	A	rs143665140		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:74279175G>A	uc003hgs.3	+	8	955	c.882G>A	c.(880-882)TCG>TCA	p.S294S	ALB_uc003hgw.3_Silent_p.S102S|ALB_uc011cbe.1_5'UTR|ALB_uc003hgt.3_Silent_p.S294S|ALB_uc010iii.2_Silent_p.S179S|ALB_uc003hgu.3_Silent_p.S144S|ALB_uc003hgv.3_5'UTR|ALB_uc011cbf.1_Silent_p.S184S|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'UTR	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	294	Albumin 2.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	ATCAAGATTCGATCTCCAGTA	0.418												
CDKL2	8999	broad.mit.edu	37	4	76551133	76551133	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:76551133T>C	uc003hiq.2	-	2	565	c.40A>G	c.(40-42)AGT>GGT	p.S14G	CDKL2_uc011cbp.1_Missense_Mutation_p.S14G|CDKL2_uc010iix.1_RNA	NM_003948	NP_003939	Q92772	CDKL2_HUMAN	cyclin-dependent kinase-like 2	14	ATP (By similarity).|Protein kinase.				sex differentiation|signal transduction	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(2)|stomach(2)|breast(2)|skin(1)	7			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			ATTCCATAACTCCCTTCTCCA	0.328												
G3BP2	9908	broad.mit.edu	37	4	76570767	76570767	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:76570767T>C	uc003hir.2	-	12	1461	c.1296A>G	c.(1294-1296)CGA>CGG	p.R432R	G3BP2_uc003his.2_Silent_p.R432R|G3BP2_uc003hit.2_Silent_p.R399R	NM_012297	NP_036429	Q9UN86	G3BP2_HUMAN	Ras-GTPase activating protein SH3 domain-binding	432	Gly-rich.				cytoplasmic sequestering of NF-kappaB|mRNA transport|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	GTPase activator activity|nucleotide binding|receptor signaling complex scaffold activity|RNA binding			breast(2)|central_nervous_system(1)	3			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			CACCGGGACCTCGATCATTGC	0.512												
SHROOM3	57619	broad.mit.edu	37	4	77661944	77661944	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:77661944A>G	uc011cbx.1	+	5	3571	c.2618A>G	c.(2617-2619)GAC>GGC	p.D873G	SHROOM3_uc011cbz.1_Missense_Mutation_p.D697G|SHROOM3_uc003hkf.1_Missense_Mutation_p.D748G|SHROOM3_uc003hkg.2_Missense_Mutation_p.D651G	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	873					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GGAGCGTCGGACAGCGGCCGT	0.687												
ANKRD56	345079	broad.mit.edu	37	4	77817393	77817393	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:77817393G>A	uc003hki.2	-	1	1610	c.1610C>T	c.(1609-1611)ACG>ATG	p.T537M		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	537											0						GCTGGGTGCCGTTCCTGCCTT	0.577												
FRAS1	80144	broad.mit.edu	37	4	79205664	79205664	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:79205664G>A	uc003hlb.2	+	13	1801	c.1361G>A	c.(1360-1362)TGT>TAT	p.C454Y	FRAS1_uc003hkw.2_Missense_Mutation_p.C454Y|FRAS1_uc003hky.1_Missense_Mutation_p.C158Y|FRAS1_uc003hkz.2_Missense_Mutation_p.C158Y|FRAS1_uc003hla.1_5'Flank	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	454	FU 1.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GTGCACAGCTGTGGACTGGGT	0.502												
NAA11	84779	broad.mit.edu	37	4	80246583	80246583	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:80246583T>A	uc003hlt.3	-	1	589	c.449A>T	c.(448-450)GAT>GTT	p.D150V		NM_032693	NP_116082	Q9BSU3	NAA11_HUMAN	alpha-N-acetyltransferase 1B	150	N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2						CTGCGAGAGATCCCGCTTCAT	0.522												
SEC31A	22872	broad.mit.edu	37	4	83765642	83765642	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:83765642C>T	uc003hnf.2	-	21	2687	c.2523G>A	c.(2521-2523)CCG>CCA	p.P841P	SEC31A_uc003hnd.2_5'UTR|SEC31A_uc003hne.2_Silent_p.P605P|SEC31A_uc011ccl.1_Silent_p.P802P|SEC31A_uc003hnl.2_Silent_p.P802P|SEC31A_uc003hng.2_Silent_p.P841P|SEC31A_uc003hnh.2_Silent_p.P841P|SEC31A_uc003hni.2_Silent_p.P841P|SEC31A_uc003hnj.2_Silent_p.P802P|SEC31A_uc011ccm.1_Silent_p.P836P|SEC31A_uc011ccn.1_Silent_p.P841P|SEC31A_uc003hnk.2_Silent_p.P802P|SEC31A_uc003hnm.2_Silent_p.P841P|SEC31A_uc003hnn.1_Silent_p.P841P	NM_001077207	NP_001070675	O94979	SC31A_HUMAN	SEC31 homolog A isoform 1	841	Interaction with PDCD6.|Pro-rich.				COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|response to calcium ion	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|perinuclear region of cytoplasm	calcium-dependent protein binding		SEC31A/JAK2(4)|SEC31A/ALK(3)	haematopoietic_and_lymphoid_tissue(4)|soft_tissue(3)|breast(1)	8		Hepatocellular(203;0.114)				TTATGAAACCCGGAGGTGGAG	0.453												
CDS1	1040	broad.mit.edu	37	4	85553014	85553014	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:85553014G>A	uc011ccv.1	+	6	1121	c.623G>A	c.(622-624)CGT>CAT	p.R208H	CDS1_uc010ike.1_Missense_Mutation_p.R12H	NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	208					signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		AAACATTATCGTCTGCAGTTT	0.328												
CDS1	1040	broad.mit.edu	37	4	85569713	85569713	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:85569713C>T	uc011ccv.1	+	13	1758	c.1260C>T	c.(1258-1260)GGC>GGT	p.G420G		NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	420					signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		TCATTAGGGGCCCAAATCCCA	0.373												
WDFY3	23001	broad.mit.edu	37	4	85660161	85660161	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:85660161A>G	uc003hpd.2	-	40	6982	c.6574_splice	c.e40+1	p.G2192_splice		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform							cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		CAAGGCAATTACCTTCACTAA	0.413												
WDFY3	23001	broad.mit.edu	37	4	85672710	85672710	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:85672710G>A	uc003hpd.2	-	36	6307	c.5899C>T	c.(5899-5901)CGG>TGG	p.R1967W		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1967						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		ATTAAGACCCGCATGAAGTCA	0.433												
WDFY3	23001	broad.mit.edu	37	4	85694043	85694043	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:85694043C>T	uc003hpd.2	-	30	5202	c.4794G>A	c.(4792-4794)GCG>GCA	p.A1598A		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1598						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		TCTCACAAACCGCAAAGGTTG	0.338												
WDFY3	23001	broad.mit.edu	37	4	85731422	85731422	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:85731422T>C	uc003hpd.2	-	14	2371	c.1963A>G	c.(1963-1965)ACA>GCA	p.T655A	WDFY3_uc003hpf.2_Missense_Mutation_p.T655A	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	655						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AGCAAGGATGTAATGTACACA	0.433												
MAPK10	5602	broad.mit.edu	37	4	86989018	86989018	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:86989018A>G	uc003hpq.2	-	9	960	c.893T>C	c.(892-894)GTG>GCG	p.V298A	MAPK10_uc010ikg.2_Missense_Mutation_p.V260A|MAPK10_uc003hpr.2_Missense_Mutation_p.V260A|MAPK10_uc003hps.2_Missense_Mutation_p.V298A|MAPK10_uc003hpt.2_Missense_Mutation_p.V298A|MAPK10_uc003hpu.2_Missense_Mutation_p.V298A|MAPK10_uc003hpv.2_Missense_Mutation_p.V153A|MAPK10_uc003hpn.2_Missense_Mutation_p.V46A|MAPK10_uc003hpo.2_Missense_Mutation_p.V153A|MAPK10_uc011ccw.1_Missense_Mutation_p.V184A|MAPK10_uc003hpp.2_Missense_Mutation_p.V153A	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2	298	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		CCGATTCTCCACATAGTTTCT	0.458												
PTPN13	5783	broad.mit.edu	37	4	87638237	87638237	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:87638237A>G	uc003hpz.2	+	9	1832	c.1352A>G	c.(1351-1353)GAA>GGA	p.E451G	PTPN13_uc003hpy.2_Missense_Mutation_p.E451G|PTPN13_uc003hqa.2_Missense_Mutation_p.E451G|PTPN13_uc003hqb.2_Missense_Mutation_p.E451G	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	451						cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		GGGGTAGATGAAACCTTAAGT	0.388												
PTPN13	5783	broad.mit.edu	37	4	87672210	87672210	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:87672210T>C	uc003hpz.2	+	19	3579	c.3099T>C	c.(3097-3099)AGT>AGC	p.S1033S	PTPN13_uc003hpy.2_Silent_p.S1033S|PTPN13_uc003hqa.2_Silent_p.S1033S|PTPN13_uc003hqb.2_Intron	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1033						cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		TAAATAGAAGTCCTGAAAGGA	0.388												
PTPN13	5783	broad.mit.edu	37	4	87679930	87679930	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:87679930T>C	uc003hpz.2	+	22	3893	c.3413T>C	c.(3412-3414)TTG>TCG	p.L1138S	PTPN13_uc003hpy.2_Missense_Mutation_p.L1138S|PTPN13_uc003hqa.2_Missense_Mutation_p.L1119S|PTPN13_uc003hqb.2_Missense_Mutation_p.L947S	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1138	PDZ 1.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		GATGGATGCTTGAAGCCAGGT	0.403												
KLHL8	57563	broad.mit.edu	37	4	88099686	88099686	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:88099686A>G	uc011cdb.1	-	5	1424	c.1039T>C	c.(1039-1041)TTC>CTC	p.F347L	KLHL8_uc003hql.1_Missense_Mutation_p.F347L|KLHL8_uc003hqm.1_Missense_Mutation_p.F271L|KLHL8_uc003hqn.1_Missense_Mutation_p.F164L|KLHL8_uc010ikj.1_5'UTR	NM_020803	NP_065854	Q9P2G9	KLHL8_HUMAN	kelch-like 8	347	Kelch 1.										0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		GGTCCAAAGAACCAACTGTTT	0.443												
NUDT9	53343	broad.mit.edu	37	4	88363012	88363012	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:88363012C>T	uc003hqq.2	+	4	798	c.475C>T	c.(475-477)CGG>TGG	p.R159W	NUDT9_uc003hqr.2_Missense_Mutation_p.R109W|NUDT9_uc010ikl.2_Missense_Mutation_p.R127W	NM_024047	NP_076952	Q9BW91	NUDT9_HUMAN	nudix-type motif 9 isoform a	159						mitochondrion	ADP-ribose diphosphatase activity				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000937)		ACTGGTGGGCCGGGGGCTTTT	0.428												
SPARCL1	8404	broad.mit.edu	37	4	88414912	88414912	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:88414912T>C	uc010ikm.2	-	5	1612	c.1040A>G	c.(1039-1041)GAT>GGT	p.D347G	SPARCL1_uc011cdc.1_Missense_Mutation_p.D222G|SPARCL1_uc003hqs.3_Missense_Mutation_p.D347G|SPARCL1_uc011cdd.1_Missense_Mutation_p.D222G|SPARCL1_uc003hqt.2_Missense_Mutation_p.D347G	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	347					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		AGTGCCGCcatcatcgccatc	0.443												
HERC5	51191	broad.mit.edu	37	4	89425424	89425424	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:89425424A>G	uc003hrt.2	+	21	2777	c.2624A>G	c.(2623-2625)GAC>GGC	p.D875G	HERC5_uc011cdm.1_Missense_Mutation_p.D513G	NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	875	HECT.				innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		ATTTTCAACGACTCTGTAAAG	0.343												
HERC3	8916	broad.mit.edu	37	4	89608434	89608434	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:89608434G>A	uc003hrw.1	+	23	2807	c.2641G>A	c.(2641-2643)GTG>ATG	p.V881M	HERC3_uc011cdn.1_Missense_Mutation_p.V763M|HERC3_uc011cdo.1_Missense_Mutation_p.V325M	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	881					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		TAATGTAACTGTGTGCAAGGA	0.353												
GPRIN3	285513	broad.mit.edu	37	4	90169014	90169014	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:90169014G>A	uc003hsm.1	-	2	2767	c.2248C>T	c.(2248-2250)CAC>TAC	p.H750Y		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	750										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		AAAACACTGTGCTGCCTTCCT	0.468												
GPRIN3	285513	broad.mit.edu	37	4	90171194	90171194	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:90171194T>C	uc003hsm.1	-	2	587	c.68A>G	c.(67-69)GAC>GGC	p.D23G		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	23										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		TCCTAGATCGTCTTCTTTTCC	0.537												
MMRN1	22915	broad.mit.edu	37	4	90816310	90816310	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:90816310C>T	uc003hst.2	+	1	259	c.188C>T	c.(187-189)GCG>GTG	p.A63V	MMRN1_uc010iku.2_Missense_Mutation_p.A63V	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	63					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		GTCATGTCGGCGGAGATAGCT	0.473												
MMRN1	22915	broad.mit.edu	37	4	90849013	90849013	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:90849013G>A	uc003hst.2	+	5	1094	c.1023G>A	c.(1021-1023)AAG>AAA	p.K341K	MMRN1_uc010iku.2_Silent_p.K307K|MMRN1_uc011cds.1_Silent_p.K83K	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	341	Potential.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		TGCAGAAGAAGATTGACAATA	0.368												
FAM190A	401145	broad.mit.edu	37	4	91230144	91230144	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:91230144C>T	uc003hsv.3	+	2	1049	c.709C>T	c.(709-711)CGG>TGG	p.R237W	FAM190A_uc003hsu.3_Missense_Mutation_p.R237W|FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Missense_Mutation_p.R237W	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	237										large_intestine(1)|ovary(1)	2						TGTAACAGAACGGGCAGGAAG	0.433												
GRID2	2895	broad.mit.edu	37	4	94436498	94436498	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:94436498G>A	uc011cdt.1	+	13	2387	c.2129G>A	c.(2128-2130)CGG>CAG	p.R710Q	GRID2_uc011cdu.1_Missense_Mutation_p.R615Q	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	710	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CAAATGTGGCGGATGATCAAC	0.473												
ATOH1	474	broad.mit.edu	37	4	94750593	94750593	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:94750593G>A	uc003hta.1	+	1	516	c.516G>A	c.(514-516)ATG>ATA	p.M172I		NM_005172	NP_005163	Q92858	ATOH1_HUMAN	atonal homolog 1	172	Helix-loop-helix motif.				transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.57e-07)		GGCGCAGGATGCATGGGCTGA	0.597												
SMARCAD1	56916	broad.mit.edu	37	4	95158115	95158115	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:95158115A>G	uc003htc.3	+	5	805	c.550A>G	c.(550-552)ACA>GCA	p.T184A	SMARCAD1_uc003htb.3_Missense_Mutation_p.T184A|SMARCAD1_uc003htd.3_Missense_Mutation_p.T184A|SMARCAD1_uc010ila.2_Missense_Mutation_p.T47A	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	184	CUE 1.				chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		GATTGAATCAACAAGCACTAT	0.323												
HPGDS	27306	broad.mit.edu	37	4	95220654	95220654	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:95220654G>A	uc003hte.1	-	6	668	c.577C>T	c.(577-579)CGA>TGA	p.R193*		NM_014485	NP_055300	O60760	HPGDS_HUMAN	prostaglandin D2 synthase, hematopoietic	193	GST C-terminal.				locomotory behavior|prostaglandin biosynthetic process|signal transduction	cytoplasm|nucleus	calcium ion binding|glutathione transferase activity|magnesium ion binding|prostaglandin-D synthase activity|protein homodimerization activity			ovary(1)	1					Glutathione(DB00143)	TGGGGCCTTCGTTTTATCCAG	0.478												
HPGDS	27306	broad.mit.edu	37	4	95220656	95220656	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:95220656T>C	uc003hte.1	-	6	666	c.575A>G	c.(574-576)AAA>AGA	p.K192R		NM_014485	NP_055300	O60760	HPGDS_HUMAN	prostaglandin D2 synthase, hematopoietic	192	GST C-terminal.				locomotory behavior|prostaglandin biosynthetic process|signal transduction	cytoplasm|nucleus	calcium ion binding|glutathione transferase activity|magnesium ion binding|prostaglandin-D synthase activity|protein homodimerization activity			ovary(1)	1					Glutathione(DB00143)	GGGCCTTCGTTTTATCCAGTT	0.473												
PDLIM5	10611	broad.mit.edu	37	4	95561578	95561578	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:95561578C>T	uc003hti.2	+	9	1411	c.1260C>T	c.(1258-1260)TGC>TGT	p.C420C	PDLIM5_uc011cdx.1_Silent_p.C317C|PDLIM5_uc003hth.2_Silent_p.C311C|PDLIM5_uc003htj.2_Silent_p.C95C|PDLIM5_uc003htk.2_Silent_p.C449C|PDLIM5_uc011cdy.1_Silent_p.C298C|PDLIM5_uc003htl.2_Silent_p.C95C	NM_006457	NP_006448	Q96HC4	PDLI5_HUMAN	PDZ and LIM domain 5 isoform a	420	LIM zinc-binding 1.				regulation of dendritic spine morphogenesis|regulation of synaptogenesis	actin cytoskeleton|cell junction|cytosol|postsynaptic density|postsynaptic membrane|synaptosome	actin binding|actinin binding|protein kinase C binding|zinc ion binding			ovary(1)|skin(1)	2		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.84e-09)		CTCCGATGTGCGCCCATTGTA	0.423												
ADH4	127	broad.mit.edu	37	4	100052676	100052676	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:100052676A>G	uc003hun.2	-	6	898	c.822T>C	c.(820-822)TGT>TGC	p.C274C	uc003hum.1_Intron|ADH4_uc011ced.1_Silent_p.C293C	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	274					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding			skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	ATCCACCTGCACAGTCAAGGG	0.403												
ADH6	130	broad.mit.edu	37	4	100128683	100128683	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:100128683A>G	uc003hup.3	-	7	978	c.884T>C	c.(883-885)GTG>GCG	p.V295A	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.V295A|ADH6_uc011cef.1_Missense_Mutation_p.V86A|ADH6_uc010ile.2_Intron	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	295	NAD (By similarity).				ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	GGCAGGCAACACCCCAACAAC	0.428												
ADH6	130	broad.mit.edu	37	4	100131424	100131424	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:100131424T>C	uc003hup.3	-	5	476	c.382A>G	c.(382-384)ACC>GCC	p.T128A	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.T128A|ADH6_uc011cef.1_Intron|ADH6_uc010ile.2_Missense_Mutation_p.T128A	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	128					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	AACCTGCTGGTACCATCAGAC	0.348												
RG9MTD2	93587	broad.mit.edu	37	4	100479326	100479326	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:100479326T>C	uc003huy.2	-	3	541	c.228A>G	c.(226-228)CGA>CGG	p.R76R	RG9MTD2_uc003huz.3_Silent_p.R76R|RG9MTD2_uc003hva.3_Silent_p.R76R	NM_152292	NP_689505	Q8TBZ6	RG9D2_HUMAN	RNA (guanine-9-) methyltransferase domain	76	Potential.						methyltransferase activity			ovary(2)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.7e-08)		TTTGACATTGTCGCTCTAATT	0.333												
DNAJB14	79982	broad.mit.edu	37	4	100844195	100844195	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:100844195A>G	uc003hvl.2	-	3	602	c.451_splice	c.e3+1	p.K151_splice	DNAJB14_uc003hvk.2_Splice_Site_p.K66_splice|DNAJB14_uc010ili.2_Splice_Site_p.K84_splice	NM_001031723	NP_001026893	Q8TBM8	DJB14_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 14						protein folding	integral to membrane	heat shock protein binding|unfolded protein binding				0				OV - Ovarian serous cystadenocarcinoma(123;4.59e-09)		GGTTTACTTTACTTTTAAAAG	0.348												
DDIT4L	115265	broad.mit.edu	37	4	101111136	101111136	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:101111136A>G	uc003hvq.2	-	2	208	c.5T>C	c.(4-6)GTT>GCT	p.V2A		NM_145244	NP_660287	Q96D03	DDT4L_HUMAN	DNA-damage-inducible transcript 4-like	2					negative regulation of signal transduction	cytoplasm				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;5.75e-09)		GCCAGTTGCAACCATGGTCAA	0.557												
CENPE	1062	broad.mit.edu	37	4	104104378	104104378	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:104104378T>C	uc003hxb.1	-	10	903	c.813A>G	c.(811-813)AAA>AAG	p.K271K	CENPE_uc003hxc.1_Silent_p.K271K	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	271	Kinesin-motor.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		CATCACTAAGTTTCTTGATCA	0.343												
TET2	54790	broad.mit.edu	37	4	106156249	106156249	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:106156249A>G	uc003hxk.2	+	3	1536	c.1150A>G	c.(1150-1152)AGC>GGC	p.S384G	TET2_uc011cez.1_Missense_Mutation_p.S405G|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.S384G|TET2_uc003hxi.1_Missense_Mutation_p.S384G	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	384					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		CTTCAAGCAAAGCTCAGTGTT	0.458			Mis N|F		MDS							
NPNT	255743	broad.mit.edu	37	4	106848587	106848587	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:106848587T>C	uc003hya.2	+	3	470	c.265_splice	c.e3+2	p.D89_splice	NPNT_uc011cfc.1_Splice_Site_p.D106_splice|NPNT_uc011cfd.1_Splice_Site_p.D89_splice|NPNT_uc011cfe.1_Splice_Site_p.D89_splice|NPNT_uc010ilt.1_Splice_Site_p.D89_splice|NPNT_uc011cff.1_Splice_Site_p.D89_splice|NPNT_uc010ilu.1_Splice_Site	NM_001033047	NP_001028219	Q6UXI9	NPNT_HUMAN	nephronectin precursor						cell differentiation	membrane	calcium ion binding			skin(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.41e-07)		GTAATCAAGGTAGGAAAACAG	0.398												
PAPSS1	9061	broad.mit.edu	37	4	108622349	108622349	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:108622349A>G	uc003hyk.2	-	2	237	c.153T>C	c.(151-153)CGT>CGC	p.R51R	PAPSS1_uc011cfh.1_RNA	NM_005443	NP_005434	O43252	PAPS1_HUMAN	3'-phosphoadenosine 5'-phosphosulfate synthase	51	Adenylyl-sulfate kinase.				3'-phosphoadenosine 5'-phosphosulfate biosynthetic process|skeletal system development|sulfate assimilation|xenobiotic metabolic process	cytosol	adenylylsulfate kinase activity|ATP binding|sulfate adenylyltransferase (ATP) activity			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.49e-05)		CTGTGCAACCACGAAAGCCAC	0.463												
HADH	3033	broad.mit.edu	37	4	108940769	108940769	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:108940769C>T	uc003hyq.2	+	4	642	c.493C>T	c.(493-495)CGA>TGA	p.R165*	HADH_uc010ilx.2_Nonsense_Mutation_p.R165*|HADH_uc010ily.2_5'UTR|HADH_uc003hyr.2_Nonsense_Mutation_p.R169*	NM_005327	NP_005318	Q16836	HCDH_HUMAN	L-3-hydroxyacyl-Coenzyme A dehydrogenase	165					fatty acid beta-oxidation	mitochondrial matrix	3-hydroxyacyl-CoA dehydrogenase activity|NAD+ binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000168)	NADH(DB00157)	CAGACAAGACCGATTCGCTGG	0.498												
RPL34	6164	broad.mit.edu	37	4	109546411	109546411	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:109546411T>C	uc003hyz.2	+	5	439	c.395_splice	c.e5+2		RPL34_uc003hza.2_Splice_Site	NM_000995	NP_000986	P49207	RL34_HUMAN	ribosomal protein L34						endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000286)		AAAGACGCTGTATGTATGACT	0.308												
AGXT2L1	64850	broad.mit.edu	37	4	109675819	109675819	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:109675819T>G	uc003hzc.2	-	5	639	c.458A>C	c.(457-459)AAG>ACG	p.K153T	AGXT2L1_uc010imc.2_Missense_Mutation_p.K147T|AGXT2L1_uc011cfm.1_Missense_Mutation_p.K113T|AGXT2L1_uc011cfn.1_Missense_Mutation_p.K80T|AGXT2L1_uc011cfo.1_Missense_Mutation_p.K95T	NM_031279	NP_112569	Q8TBG4	AT2L1_HUMAN	alanine-glyoxylate aminotransferase 2-like 1	153					cellular amino acid metabolic process	mitochondrion	alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000281)		TTTCTGAAACTTATATGGGCT	0.249												
GAR1	54433	broad.mit.edu	37	4	110739135	110739135	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:110739135T>C	uc003hzt.2	+	3	565	c.258T>C	c.(256-258)TGT>TGC	p.C86C	GAR1_uc003hzu.2_Silent_p.C86C|GAR1_uc010imh.1_Silent_p.C86C|GAR1_uc010imi.2_Silent_p.C86C	NM_018983	NP_061856	Q9NY12	GAR1_HUMAN	nucleolar protein family A, member 1	86					rRNA processing|snRNA pseudouridine synthesis	box H/ACA snoRNP complex|Cajal body	cation channel activity|pseudouridine synthase activity|snoRNA binding				0						ACATAGTTTGTAAATGTACCA	0.338												
EGF	1950	broad.mit.edu	37	4	110909752	110909752	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:110909752G>A	uc003hzy.3	+	18	3073	c.2621G>A	c.(2620-2622)TGT>TAT	p.C874Y	EGF_uc011cfu.1_Missense_Mutation_p.C832Y|EGF_uc011cfv.1_Missense_Mutation_p.C874Y|EGF_uc010imk.2_Intron	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	874	EGF-like 7; calcium-binding (Potential).|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	ATAGATGAATGTGAGATGGGT	0.453												
ENPEP	2028	broad.mit.edu	37	4	111398135	111398135	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:111398135A>G	uc003iab.3	+	1	907	c.565A>G	c.(565-567)ACC>GCC	p.T189A		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	189	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	GTATCTCCTGACCATGGAGTT	0.517												
ENPEP	2028	broad.mit.edu	37	4	111409702	111409702	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:111409702T>C	uc003iab.3	+	2	992	c.650T>C	c.(649-651)ATA>ACA	p.I217T		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	217	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CTAAGGAGCATAGTGGCCACC	0.383												
ALPK1	80216	broad.mit.edu	37	4	113352170	113352170	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:113352170C>T	uc003iap.3	+	11	1746	c.1467C>T	c.(1465-1467)TGC>TGT	p.C489C	ALPK1_uc003ian.3_Silent_p.C489C|ALPK1_uc011cfx.1_Silent_p.C411C|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Silent_p.C317C	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	489							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		CAGGAGTCTGCATCACTGCTC	0.368												
C4orf21	55345	broad.mit.edu	37	4	113540080	113540080	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:113540080T>C	uc003iau.2	-	6	1329	c.1118A>G	c.(1117-1119)CAG>CGG	p.Q373R	C4orf21_uc003iaw.2_Missense_Mutation_p.Q373R	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		TTCAACGAACTGTATAATTTT	0.348												
LARP7	51574	broad.mit.edu	37	4	113568024	113568024	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:113568024T>C	uc003iay.2	+	5	743	c.465T>C	c.(463-465)AGT>AGC	p.S155S	LARP7_uc003iaz.2_Silent_p.S162S|LARP7_uc003iba.2_Silent_p.S76S|LARP7_uc003ibb.2_Silent_p.S155S	NM_016648	NP_057732	Q4G0J3	LARP7_HUMAN	La ribonucleoprotein domain family, member 7	155	RRM.				RNA processing	nucleoplasm|ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(3)	3		Ovarian(17;0.0443)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		TTTATATAAGTATACCACATT	0.333												
PRSS12	8492	broad.mit.edu	37	4	119203203	119203203	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:119203203A>G	uc003ica.1	-	13	2563	c.2516T>C	c.(2515-2517)GTG>GCG	p.V839A		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	839	Peptidase S1.			VVY -> AAL (in Ref. 3; AAD25919).		membrane	scavenger receptor activity			skin(1)	1						CCCATACACCACCCAGCTCTC	0.537												
PRSS12	8492	broad.mit.edu	37	4	119216958	119216958	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:119216958T>A	uc003ica.1	-	10	1938	c.1891A>T	c.(1891-1893)ATC>TTC	p.I631F		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	631	Peptidase S1.	Reactive bond homolog (Potential).				membrane	scavenger receptor activity			skin(1)	1						CCACCAATGATCCGCTTCTGC	0.368												
PRDM5	11107	broad.mit.edu	37	4	121732558	121732558	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:121732558A>G	uc003idn.2	-	8	1162	c.912T>C	c.(910-912)TGT>TGC	p.C304C	PRDM5_uc003ido.2_Silent_p.C273C|PRDM5_uc010ine.2_Silent_p.C273C	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	304	C2H2-type 5.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						ATGCTGAAGAACACTTTTTAT	0.264												
PRDM5	11107	broad.mit.edu	37	4	121737729	121737729	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:121737729A>G	uc003idn.2	-	7	994	c.744T>C	c.(742-744)AGT>AGC	p.S248S	PRDM5_uc003ido.2_Silent_p.H217H|PRDM5_uc010ine.2_Silent_p.H217H|PRDM5_uc010inf.2_Silent_p.H217H	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	248	C2H2-type 3; atypical.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						GCTGCTCAAAACTACAAGACA	0.478												
KIAA1109	84162	broad.mit.edu	37	4	123109234	123109234	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:123109234A>G	uc003ieh.2	+	7	857	c.812A>G	c.(811-813)CAA>CGA	p.Q271R	KIAA1109_uc003iei.1_Missense_Mutation_p.Q25R	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	271					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GTTGGTCTTCAAAATGATGAG	0.313												
KIAA1109	84162	broad.mit.edu	37	4	123128293	123128293	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:123128293T>C	uc003ieh.2	+	14	1572	c.1527T>C	c.(1525-1527)AGT>AGC	p.S509S	KIAA1109_uc003iei.1_Silent_p.S263S|KIAA1109_uc010ins.1_5'UTR|KIAA1109_uc003iej.1_5'Flank	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	509					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						CTAGTGACAGTCCTCCAGACA	0.318												
KIAA1109	84162	broad.mit.edu	37	4	123141513	123141513	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:123141513G>A	uc003ieh.2	+	20	2546	c.2501G>A	c.(2500-2502)TGC>TAC	p.C834Y	KIAA1109_uc003iei.1_Missense_Mutation_p.C588Y|KIAA1109_uc010ins.1_Missense_Mutation_p.C178Y|KIAA1109_uc003iej.1_Missense_Mutation_p.C219Y	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	834					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GGTCCTGAATGCCCTACAGCT	0.373												
KIAA1109	84162	broad.mit.edu	37	4	123156180	123156180	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:123156180T>C	uc003ieh.2	+	25	3619	c.3574_splice	c.e25+2	p.G1192_splice	KIAA1109_uc003iei.1_Splice_Site_p.G945_splice|KIAA1109_uc010ins.1_Splice_Site_p.G535_splice	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein						regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TTATAGATGGTAATAAAATGT	0.333												
KIAA1109	84162	broad.mit.edu	37	4	123161495	123161495	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:123161495T>C	uc003ieh.2	+	27	4703	c.4658T>C	c.(4657-4659)GTT>GCT	p.V1553A	KIAA1109_uc003iei.1_Missense_Mutation_p.V1306A|KIAA1109_uc010ins.1_Missense_Mutation_p.V896A|KIAA1109_uc003iek.2_Missense_Mutation_p.V172A	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	1553					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						CAGCTTTCTGTTCCAACTTTT	0.333												
KIAA1109	84162	broad.mit.edu	37	4	123170828	123170828	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:123170828A>G	uc003ieh.2	+	34	5746	c.5701A>G	c.(5701-5703)ACC>GCC	p.T1901A	KIAA1109_uc003iek.2_Missense_Mutation_p.T520A	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	1901					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TGAAAATTTAACCATAAAAGG	0.373												
KIAA1109	84162	broad.mit.edu	37	4	123175388	123175388	+	Silent	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:123175388A>T	uc003ieh.2	+	36	6006	c.5961A>T	c.(5959-5961)CTA>CTT	p.L1987L	KIAA1109_uc003iel.1_5'Flank|KIAA1109_uc003iek.2_Silent_p.L606L	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	1987					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AAAAAGATCTACCTCTGATGC	0.378												
KIAA1109	84162	broad.mit.edu	37	4	123255605	123255605	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:123255605A>G	uc003ieh.2	+	67	11798	c.11753A>G	c.(11752-11754)GAT>GGT	p.D3918G	KIAA1109_uc003iem.2_Intron	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3918					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GGTATGAAAGATAGTGCAACA	0.478												
ADAD1	132612	broad.mit.edu	37	4	123342484	123342484	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:123342484A>G	uc003ieo.2	+	12	1788	c.1556A>G	c.(1555-1557)AAC>AGC	p.N519S	ADAD1_uc003iep.2_Missense_Mutation_p.N508S|ADAD1_uc003ieq.2_Missense_Mutation_p.N501S	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	519	A to I editase.				multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						AGTCGGTTTAACCTGCTTGCC	0.338												
SPATA5	166378	broad.mit.edu	37	4	123949496	123949496	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:123949496A>G	uc003iez.3	+	11	2098	c.2025A>G	c.(2023-2025)ACA>ACG	p.T675T	SPATA5_uc003iey.2_Silent_p.T674T	NM_145207	NP_660208	Q8NB90	SPAT5_HUMAN	spermatogenesis associated 5	675	ATP 2 (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	mitochondrion	ATP binding|nucleoside-triphosphatase activity				0						GCTCTAAAACAATGATAGCAA	0.443												
ANKRD50	57182	broad.mit.edu	37	4	125591594	125591594	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:125591594A>G	uc003ifg.3	-	3	3104	c.2838T>C	c.(2836-2838)GGT>GGC	p.G946G	ANKRD50_uc011cgo.1_Silent_p.G767G|ANKRD50_uc010inw.2_Silent_p.G946G	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	946	ANK 15.									central_nervous_system(1)	1						GTGTAGGCCGACCATCAGCAT	0.423												
FAT4	79633	broad.mit.edu	37	4	126240723	126240723	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:126240723T>C	uc003ifj.3	+	1	3157	c.3157T>C	c.(3157-3159)TAT>CAT	p.Y1053H		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1053	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGGTCAATTGTATATAAAAAG	0.408												
FAT4	79633	broad.mit.edu	37	4	126328057	126328057	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:126328057A>G	uc003ifj.3	+	3	5330	c.5330A>G	c.(5329-5331)TAC>TGC	p.Y1777C	FAT4_uc011cgp.1_Missense_Mutation_p.Y75C	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1777	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTCGTCACATACACTATCATT	0.428												
FAT4	79633	broad.mit.edu	37	4	126336235	126336235	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:126336235T>C	uc003ifj.3	+	5	6117	c.6117T>C	c.(6115-6117)ATT>ATC	p.I2039I	FAT4_uc011cgp.1_Silent_p.I337I	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2039	Cadherin 19.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AAGTCTCCATTATTTTGTTGG	0.413												
FAT4	79633	broad.mit.edu	37	4	126389698	126389698	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:126389698T>C	uc003ifj.3	+	11	11931	c.11931T>C	c.(11929-11931)AGT>AGC	p.S3977S	FAT4_uc011cgp.1_Silent_p.S2240S|FAT4_uc003ifi.1_Silent_p.S1455S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3977	Laminin G-like 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGTTGAACAGTTATGGATTTG	0.313												
FAT4	79633	broad.mit.edu	37	4	126398439	126398439	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:126398439A>G	uc003ifj.3	+	13	12423	c.12423A>G	c.(12421-12423)GGA>GGG	p.G4141G	FAT4_uc011cgp.1_Silent_p.G2404G|FAT4_uc003ifi.1_Silent_p.G1619G	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4141	Laminin G-like 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAGTCAATGGAAGGCCTCTGG	0.418												
FAT4	79633	broad.mit.edu	37	4	126400953	126400953	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:126400953T>C	uc003ifj.3	+	14	12531	c.12531T>C	c.(12529-12531)TGT>TGC	p.C4177C	FAT4_uc011cgp.1_Intron|FAT4_uc003ifi.1_Silent_p.C1655C	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4177	EGF-like 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GTGGCACATGTATGGATTACT	0.443												
FAT4	79633	broad.mit.edu	37	4	126411790	126411790	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:126411790A>G	uc003ifj.3	+	17	13813	c.13813A>G	c.(13813-13815)ATC>GTC	p.I4605V	FAT4_uc011cgp.1_Missense_Mutation_p.I2846V|FAT4_uc003ifi.1_Missense_Mutation_p.I2082V	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4605	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTCAGAAACCATCCCCAGCGC	0.488												
INTU	27152	broad.mit.edu	37	4	128554306	128554306	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:128554306T>C	uc003ifk.1	+	1	187	c.117T>C	c.(115-117)GGT>GGC	p.G39G	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	39										ovary(1)	1						GCGACTCGGGTTCATATTCCT	0.498												
INTU	27152	broad.mit.edu	37	4	128627893	128627893	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:128627893A>G	uc003ifk.1	+	12	2110	c.2040A>G	c.(2038-2040)CTA>CTG	p.L680L	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	680										ovary(1)	1						TCAGTAGGCTACAAGGTACTT	0.453												
INTU	27152	broad.mit.edu	37	4	128632194	128632194	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:128632194A>G	uc003ifk.1	+	14	2566	c.2496A>G	c.(2494-2496)ATA>ATG	p.I832M	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	832										ovary(1)	1						CTCAGCTAATAAAGAATTTCC	0.428												
PLK4	10733	broad.mit.edu	37	4	128814700	128814700	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:128814700A>G	uc003ifo.2	+	12	2600	c.2355A>G	c.(2353-2355)ATA>ATG	p.I785M	PLK4_uc011cgs.1_Missense_Mutation_p.I753M|PLK4_uc011cgt.1_Missense_Mutation_p.I744M	NM_014264	NP_055079	O00444	PLK4_HUMAN	polo-like kinase 4	785					G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						TGGAATCCATAATTTCAGAAG	0.328												
PHF17	79960	broad.mit.edu	37	4	129783206	129783206	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:129783206T>C	uc003igk.2	+	9	1609	c.1329T>C	c.(1327-1329)CCT>CCC	p.P443P	PHF17_uc003igj.2_Silent_p.P443P|PHF17_uc003igl.2_Silent_p.P431P|PHF17_uc011cgy.1_Silent_p.P443P|PHF17_uc003igm.2_Silent_p.P443P	NM_199320	NP_955352	Q6IE81	JADE1_HUMAN	PHD finger protein 17 long isoform	443					apoptosis|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell growth|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	histone acetyltransferase complex|mitochondrion	protein binding|zinc ion binding				0						TGCGGCTGCCTGAGGAAGTAG	0.527												
SCLT1	132320	broad.mit.edu	37	4	129878253	129878253	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:129878253T>C	uc003igp.2	-	13	1580	c.1074A>G	c.(1072-1074)GAA>GAG	p.E358E	SCLT1_uc003ign.2_Silent_p.E22E|SCLT1_uc003igo.2_5'UTR|SCLT1_uc003igq.2_Intron|SCLT1_uc010iob.1_Intron	NM_144643	NP_653244	Q96NL6	SCLT1_HUMAN	sodium channel associated protein 1	358	Potential.					centrosome				ovary(3)|lung(1)|central_nervous_system(1)	5						CTATGTCTTCTTCTTTTTGCT	0.289												
PCDH10	57575	broad.mit.edu	37	4	134073171	134073171	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:134073171A>G	uc003iha.2	+	1	2702	c.1876A>G	c.(1876-1878)ATG>GTG	p.M626V	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.M626V	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	626	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		TGGCAACGAAATGAACCTCTT	0.682												
PCDH18	54510	broad.mit.edu	37	4	138451686	138451686	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:138451686G>T	uc003ihe.3	-	1	1944	c.1557C>A	c.(1555-1557)ACC>ACA	p.T519T	PCDH18_uc003ihf.3_Silent_p.T512T|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.T299T|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	519	Extracellular (Potential).|Cadherin 5.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ATGGGTCAATGGTTACATATG	0.423												
MAML3	55534	broad.mit.edu	37	4	140810714	140810714	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:140810714T>C	uc003ihz.1	-	3	2616	c.1864A>G	c.(1864-1866)AAC>GAC	p.N622D	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	622	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					ATCAAGGGGTTTTTGTTGGGG	0.388												
CLGN	1047	broad.mit.edu	37	4	141311858	141311858	+	Missense_Mutation	SNP	T	T	C	rs113979220		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:141311858T>C	uc011chi.1	-	15	1894	c.1676A>G	c.(1675-1677)AAG>AGG	p.K559R	CLGN_uc003iii.2_Missense_Mutation_p.K559R	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	559	Cytoplasmic (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					TTCTTCACTCTTTTCCTCAGG	0.313												
OTUD4	54726	broad.mit.edu	37	4	146059468	146059468	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:146059468C>T	uc003ika.3	-	21	2402	c.2264G>A	c.(2263-2265)GGG>GAG	p.G755E	OTUD4_uc003ijz.3_Missense_Mutation_p.G754E	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	819							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					CAGAAGCTGCCCAGGGGTCTC	0.478												
MMAA	166785	broad.mit.edu	37	4	146560420	146560420	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:146560420G>A	uc003ikh.3	+	2	214	c.129G>A	c.(127-129)CCG>CCA	p.P43P	MMAA_uc003ikg.2_Silent_p.P43P|MMAA_uc003iki.1_RNA|MMAA_uc010iow.2_RNA	NM_172250	NP_758454	Q8IVH4	MMAA_HUMAN	methylmalonic aciduria type A precursor	43						mitochondrion	GTP binding|nucleoside-triphosphatase activity			ovary(1)	1	all_hematologic(180;0.151)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GTGCTCAGCCGTTTAATTCTC	0.418												
POU4F2	5458	broad.mit.edu	37	4	147561397	147561397	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:147561397G>T	uc003ikv.2	+	2	915	c.667G>T	c.(667-669)GCC>TCC	p.A223S		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	223					estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					GCCGCACATGGCCACCATGAA	0.731												
ARHGAP10	79658	broad.mit.edu	37	4	148993227	148993227	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:148993227C>T	uc003ilf.2	+	23	2356	c.2356C>T	c.(2356-2358)CTG>TTG	p.L786L	ARHGAP10_uc003ilg.2_Silent_p.L384L|ARHGAP10_uc003ilh.2_Silent_p.L367L|ARHGAP10_uc003ili.2_Silent_p.L219L	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	786	SH3.				apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		CGTCAAGCTGCTGTAGCTCCT	0.602												
NR3C2	4306	broad.mit.edu	37	4	149002532	149002532	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:149002532G>A	uc003ilj.3	-	9	3252	c.2918C>T	c.(2917-2919)TCG>TTG	p.S973L	NR3C2_uc003ilk.3_Missense_Mutation_p.S856L|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	973	Steroid-binding.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	GGCGTTCCCCGACTCCACCTT	0.567												
NR3C2	4306	broad.mit.edu	37	4	149357029	149357029	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:149357029A>G	uc003ilj.3	-	2	1318	c.984T>C	c.(982-984)AGT>AGC	p.S328S	NR3C2_uc003ilk.3_Silent_p.S328S|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	328	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	ATCCCACAGTACTGGCTGCCG	0.507												
LRBA	987	broad.mit.edu	37	4	151236759	151236759	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:151236759T>C	uc010ipj.2	-	52	8154	c.7680A>G	c.(7678-7680)GTA>GTG	p.V2560V	LRBA_uc010ipi.2_Silent_p.V82V|LRBA_uc003ils.3_Silent_p.V455V|LRBA_uc003ilt.3_Silent_p.V1208V|LRBA_uc003ilu.3_Silent_p.V2549V	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2560						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					GCTGGTCTTGTACAGCACCTT	0.388												
LRBA	987	broad.mit.edu	37	4	151356858	151356858	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:151356858T>C	uc010ipj.2	-	47	7431	c.6957A>G	c.(6955-6957)GAA>GAG	p.E2319E	LRBA_uc010ipi.2_Intron|LRBA_uc003ils.3_Silent_p.E209E|LRBA_uc003ilt.3_Silent_p.E967E|LRBA_uc003ilu.3_Silent_p.E2308E	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2319	BEACH.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TTGTAAAGGGTTCCTAAAAAA	0.328												
MAB21L2	10586	broad.mit.edu	37	4	151504269	151504269	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:151504269A>G	uc003ilw.2	+	1	1193	c.88A>G	c.(88-90)ACC>GCC	p.T30A	LRBA_uc003ils.3_5'Flank|LRBA_uc003ilt.3_Intron|LRBA_uc003ilu.3_Intron|LRBA_uc010ipj.2_Intron	NM_006439	NP_006430	Q9Y586	MB212_HUMAN	mab-21-like protein 2	30					nervous system development	nucleus				ovary(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.159)		CATCGCCAAAACCATCCGAGA	0.587												
LRBA	987	broad.mit.edu	37	4	151604819	151604819	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:151604819A>G	uc010ipj.2	-	37	6279	c.5805T>C	c.(5803-5805)TGT>TGC	p.C1935C	LRBA_uc003ilt.3_Silent_p.C594C|LRBA_uc003ilu.3_Silent_p.C1935C	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	1935						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TCAAATGATCACACATCTTCT	0.373												
PRSS48	345062	broad.mit.edu	37	4	152212379	152212379	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:152212379A>C	uc011cif.1	+	5	761	c.761A>C	c.(760-762)AAT>ACT	p.N254T	PRSS48_uc011cig.1_Missense_Mutation_p.N111T	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	254	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity	p.G254R(1)		large_intestine(1)	1						GTCTACACCAATGTAATCTAC	0.438												
FBXW7	55294	broad.mit.edu	37	4	153247360	153247360	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:153247360G>A	uc003ims.2	-	10	1591	c.1442C>T	c.(1441-1443)GCC>GTC	p.A481V	FBXW7_uc011cii.1_Missense_Mutation_p.A481V|FBXW7_uc003imt.2_Missense_Mutation_p.A481V|FBXW7_uc011cih.1_Missense_Mutation_p.A305V|FBXW7_uc003imq.2_Missense_Mutation_p.A401V|FBXW7_uc003imr.2_Missense_Mutation_p.A363V	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	481	WD 3.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				CCTAAGAGTGGCATCTCGAGA	0.403			Mis|N|D|F		colorectal|endometrial|T-ALL							
RNF175	285533	broad.mit.edu	37	4	154636790	154636790	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:154636790T>C	uc003int.2	-	7	1028	c.655A>G	c.(655-657)ACA>GCA	p.T219A	RNF175_uc003inu.1_Missense_Mutation_p.T91A	NM_173662	NP_775933	Q8N4F7	RN175_HUMAN	ring finger protein 175	219						integral to membrane	zinc ion binding			ovary(1)|pancreas(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				AAGCTCCTTGTAGGCAACCGG	0.493												
PLRG1	5356	broad.mit.edu	37	4	155468901	155468901	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:155468901G>A	uc003iny.2	-	3	284	c.221C>T	c.(220-222)ACG>ATG	p.T74M	PLRG1_uc003inz.2_Missense_Mutation_p.T74M|PLRG1_uc011cil.1_Translation_Start_Site	NM_002669	NP_002660	O43660	PLRG1_HUMAN	pleiotropic regulator 1 (PRL1 homolog,	74						catalytic step 2 spliceosome|nuclear speck	protein binding|signal transducer activity|transcription corepressor activity				0	all_hematologic(180;0.215)	Renal(120;0.0854)				ATATGAATCCGTTGCATTCTG	0.343												
NPY2R	4887	broad.mit.edu	37	4	156135287	156135287	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:156135287A>T	uc003ioq.2	+	2	691	c.196A>T	c.(196-198)ATT>TTT	p.I66F	NPY2R_uc003ior.2_Missense_Mutation_p.I66F	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	66	Helical; Name=1; (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GCTTGGGGTAATTGGCAACTC	0.463												
GUCY1B3	2983	broad.mit.edu	37	4	156721148	156721148	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:156721148C>T	uc003ipc.2	+	9	1264	c.1097C>T	c.(1096-1098)ACC>ATC	p.T366I	GUCY1B3_uc011cio.1_Missense_Mutation_p.T388I|GUCY1B3_uc011cip.1_Missense_Mutation_p.T346I|GUCY1B3_uc003ipd.2_Missense_Mutation_p.T294I|GUCY1B3_uc010iqf.2_Missense_Mutation_p.T366I|GUCY1B3_uc010iqg.2_Missense_Mutation_p.T294I|GUCY1B3_uc011ciq.1_Missense_Mutation_p.T294I	NM_000857	NP_000848	Q02153	GCYB1_HUMAN	guanylate cyclase 1, soluble, beta 3	366					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble|intracellular membrane-bounded organelle	GTP binding|guanylate cyclase activity|receptor activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.148)		TACAAACTCACCCAAGAACTG	0.458												
PDGFC	56034	broad.mit.edu	37	4	157693895	157693895	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:157693895A>G	uc003iph.1	-	4	1137	c.646T>C	c.(646-648)TAT>CAT	p.Y216H	PDGFC_uc003ipi.1_Missense_Mutation_p.Y53H|PDGFC_uc011cis.1_Missense_Mutation_p.Y53H|PDGFC_uc011cir.1_Missense_Mutation_p.Y60H	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	216					central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		GTTGGCCTATATAGATCTTCT	0.388												
RXFP1	59350	broad.mit.edu	37	4	159559213	159559213	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:159559213T>C	uc003ipz.2	+	13	1107	c.1025T>C	c.(1024-1026)CTT>CCT	p.L342P	RXFP1_uc010iqj.1_Missense_Mutation_p.L171P|RXFP1_uc011cja.1_Missense_Mutation_p.L237P|RXFP1_uc010iqo.2_Intron|RXFP1_uc011cjb.1_Intron|RXFP1_uc010iqk.2_Missense_Mutation_p.L210P|RXFP1_uc011cjc.1_Missense_Mutation_p.L261P|RXFP1_uc011cjd.1_Missense_Mutation_p.L261P|RXFP1_uc010iql.2_Missense_Mutation_p.L186P|RXFP1_uc011cje.1_Missense_Mutation_p.L369P|RXFP1_uc010iqm.2_Missense_Mutation_p.L309P|RXFP1_uc011cjf.1_Missense_Mutation_p.L212P|RXFP1_uc010iqn.2_Missense_Mutation_p.L288P	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	342	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		TTTGATTATCTTGTCAAACTC	0.259												
RXFP1	59350	broad.mit.edu	37	4	159569818	159569818	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:159569818A>T	uc003ipz.2	+	17	2006	c.1924A>T	c.(1924-1926)ATA>TTA	p.I642L	RXFP1_uc011cja.1_Missense_Mutation_p.I537L|RXFP1_uc010iqo.2_Missense_Mutation_p.I594L|RXFP1_uc011cjb.1_Missense_Mutation_p.I540L|RXFP1_uc010iqk.2_Missense_Mutation_p.I510L|RXFP1_uc011cjc.1_Missense_Mutation_p.I561L|RXFP1_uc011cjd.1_Missense_Mutation_p.I561L|RXFP1_uc010iql.2_Missense_Mutation_p.I486L|RXFP1_uc011cje.1_Missense_Mutation_p.I669L|RXFP1_uc010iqm.2_Missense_Mutation_p.I609L|RXFP1_uc011cjf.1_Missense_Mutation_p.I511L|RXFP1_uc010iqn.2_Missense_Mutation_p.I587L	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	642	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		ATTATGCTGGATACCCATTTT	0.303												
FNIP2	57600	broad.mit.edu	37	4	159780291	159780291	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:159780291A>G	uc003iqe.3	+	9	1123	c.940A>G	c.(940-942)AGC>GGC	p.S314G		NM_020840	NP_065891	Q9P278	FNIP2_HUMAN	folliculin interacting protein 2	314					DNA damage response, signal transduction resulting in induction of apoptosis|protein phosphorylation|regulation of protein phosphorylation	cytoplasm	protein binding				0	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.00936)		AATTGCCATAAGCATCATCTT	0.408												
FSTL5	56884	broad.mit.edu	37	4	162376252	162376252	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:162376252G>T	uc003iqh.2	-	15	2181	c.1745C>A	c.(1744-1746)CCT>CAT	p.P582H	FSTL5_uc003iqi.2_Missense_Mutation_p.P581H|FSTL5_uc010iqv.2_Missense_Mutation_p.P572H	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	582						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		CGTGTGGTGAGGCACATTCCC	0.418												
FSTL5	56884	broad.mit.edu	37	4	162459394	162459394	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:162459394A>G	uc003iqh.2	-	10	1672	c.1236T>C	c.(1234-1236)ACT>ACC	p.T412T	FSTL5_uc003iqi.2_Silent_p.T411T|FSTL5_uc010iqv.2_Silent_p.T411T	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	412	Ig-like 2.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TTGCGATACAAGTGTATGCTC	0.413												
FSTL5	56884	broad.mit.edu	37	4	162463689	162463689	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:162463689A>G	uc003iqh.2	-	9	1608	c.1172T>C	c.(1171-1173)CTT>CCT	p.L391P	FSTL5_uc003iqi.2_Missense_Mutation_p.L390P|FSTL5_uc010iqv.2_Missense_Mutation_p.L390P	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	391	Ig-like 2.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		AGCACCTTGAAGCGTGAGTTG	0.358												
FSTL5	56884	broad.mit.edu	37	4	162697185	162697185	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:162697185T>C	uc003iqh.2	-	5	887	c.451A>G	c.(451-453)ATG>GTG	p.M151V	FSTL5_uc003iqi.2_Missense_Mutation_p.M150V|FSTL5_uc010iqv.2_Missense_Mutation_p.M150V	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	151						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TCTAATAGCATATTTTTCATC	0.284												
TKTL2	84076	broad.mit.edu	37	4	164393014	164393014	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:164393014T>G	uc003iqp.3	-	1	2034	c.1873A>C	c.(1873-1875)ATG>CTG	p.M625L		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	625						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GTTTACTTCATTAAAGTAAGT	0.383												
TKTL2	84076	broad.mit.edu	37	4	164394169	164394169	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:164394169T>C	uc003iqp.3	-	1	879	c.718A>G	c.(718-720)ACT>GCT	p.T240A		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	240						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ACTATAGCAGTAGGCTTGTTC	0.458												
KLHL2	11275	broad.mit.edu	37	4	166160048	166160048	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:166160048A>G	uc003irb.2	+	4	637	c.378A>G	c.(376-378)GTA>GTG	p.V126V	KLHL2_uc011cjm.1_Silent_p.V130V|KLHL2_uc003irc.2_Silent_p.V38V	NM_007246	NP_009177	O95198	KLHL2_HUMAN	kelch-like 2, Mayven isoform 1	126					intracellular protein transport	actin cytoskeleton|cytoplasm	actin binding|transporter activity				0	all_hematologic(180;0.221)			GBM - Glioblastoma multiforme(119;2.94e-27)|COAD - Colon adenocarcinoma(41;1.4e-05)|Kidney(143;4.95e-05)|KIRC - Kidney renal clear cell carcinoma(143;0.000927)		AAGAAAATGTACAGGTAAGAG	0.348												
SC4MOL	6307	broad.mit.edu	37	4	166254547	166254547	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:166254547A>G	uc003ire.2	+	2	155	c.25A>G	c.(25-27)ATC>GTC	p.I9V	SC4MOL_uc010irb.2_Missense_Mutation_p.I9V|SC4MOL_uc003irf.2_Intron	NM_006745	NP_006736	Q15800	ERG25_HUMAN	sterol-C4-methyl oxidase-like isoform 1	9					cholesterol biosynthetic process|fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	C-4 methylsterol oxidase activity|iron ion binding				0	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0875)	NADH(DB00157)	AAGTGTCAGCATCTTTAGTTC	0.333												
DDX60	55601	broad.mit.edu	37	4	169146804	169146804	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:169146804C>A	uc003irp.2	-	34	4849	c.4557G>T	c.(4555-4557)GAG>GAT	p.E1519D	DDX60_uc003iro.2_Translation_Start_Site	NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1519							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		CACTAAAATCCTCAGGGAGAT	0.353												
DDX60L	91351	broad.mit.edu	37	4	169325220	169325220	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:169325220A>G	uc003irq.3	-	25	3472	c.3251T>C	c.(3250-3252)TTG>TCG	p.L1084S	DDX60L_uc003irr.1_Missense_Mutation_p.L1084S|DDX60L_uc003irs.1_Missense_Mutation_p.L779S	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1084							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		TGAACTAGACAATGAATCCGG	0.289												
PALLD	23022	broad.mit.edu	37	4	169845505	169845505	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:169845505T>C	uc011cjx.1	+	19	3369	c.3158T>C	c.(3157-3159)GTG>GCG	p.V1053A	CBR4_uc011cjy.1_Intron|PALLD_uc003iru.2_Missense_Mutation_p.V1036A|PALLD_uc003irv.2_Missense_Mutation_p.V654A|PALLD_uc003irw.2_Missense_Mutation_p.V538A|PALLD_uc003irx.2_Missense_Mutation_p.V262A	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	1260	Ig-like C2-type 5.|Interaction with EZR.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		GTATTGGGAGTGCCACCACCT	0.468									Pancreatic_Cancer_Familial_Clustering_of			
NEK1	4750	broad.mit.edu	37	4	170498105	170498105	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:170498105T>C	uc003isb.1	-	11	1486	c.994A>G	c.(994-996)AAG>GAG	p.K332E	NEK1_uc003isc.1_Missense_Mutation_p.K332E|NEK1_uc003isd.1_Missense_Mutation_p.K332E|NEK1_uc003ise.1_Missense_Mutation_p.K332E|NEK1_uc003isf.1_Missense_Mutation_p.K332E|NEK1_uc003isg.1_Missense_Mutation_p.K253E	NM_012224	NP_036356	Q96PY6	NEK1_HUMAN	NIMA-related kinase 1	332					cell division|cilium assembly|mitosis	nucleus|pericentriolar material	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(3)|ovary(2)|large_intestine(1)	6		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)|KIRC - Kidney renal clear cell carcinoma(143;0.0325)|Kidney(143;0.0385)|LUSC - Lung squamous cell carcinoma(193;0.14)		AGTGGTTTCTTTTCGTGTAAT	0.323												
CLCN3	1182	broad.mit.edu	37	4	170618838	170618838	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:170618838G>A	uc003isi.2	+	9	2025	c.1516G>A	c.(1516-1518)GCA>ACA	p.A506T	CLCN3_uc003ish.2_Missense_Mutation_p.A506T|CLCN3_uc011cjz.1_Missense_Mutation_p.A489T|CLCN3_uc011cka.1_Missense_Mutation_p.A479T|CLCN3_uc003isj.1_Missense_Mutation_p.A479T	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	506	Helical; (By similarity).				endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		GTTATGCCTGGCACTCATATT	0.373												
MFAP3L	9848	broad.mit.edu	37	4	170913013	170913013	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:170913013T>C	uc003isp.3	-	3	924	c.746A>G	c.(745-747)AAC>AGC	p.N249S	MFAP3L_uc003isn.3_Missense_Mutation_p.N146S	NM_021647	NP_067679	O75121	MFA3L_HUMAN	microfibrillar-associated protein 3-like isoform	249	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0201)|LUSC - Lung squamous cell carcinoma(193;0.116)		AGTCCTGCAGTTCATAATGAG	0.557												
AADAT	51166	broad.mit.edu	37	4	170983111	170983111	+	Missense_Mutation	SNP	C	C	T	rs139598358		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:170983111C>T	uc003isr.2	-	12	1510	c.1168G>A	c.(1168-1170)GAT>AAT	p.D390N	AADAT_uc003iss.2_Missense_Mutation_p.D390N|AADAT_uc003ist.2_Missense_Mutation_p.D394N	NM_016228	NP_057312	Q8N5Z0	AADAT_HUMAN	kynurenine aminotransferase II	390					2-oxoglutarate metabolic process|biosynthetic process|glutamate metabolic process|lysine catabolic process	mitochondrial matrix	2-aminoadipate transaminase activity|kynurenine-oxoglutarate transaminase activity|protein homodimerization activity				0		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0355)|LUSC - Lung squamous cell carcinoma(193;0.118)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	GCTGAGCTATCGACGTAGAAA	0.403												
GALNTL6	442117	broad.mit.edu	37	4	173232782	173232782	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:173232782A>G	uc003isv.2	+	4	1001	c.265A>G	c.(265-267)AAA>GAA	p.K89E		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	89	Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						TGAACATGGGAAACCTTACCC	0.388												
GALNTL6	442117	broad.mit.edu	37	4	173873306	173873306	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:173873306A>C	uc003isv.2	+	10	2004	c.1268A>C	c.(1267-1269)AAG>ACG	p.K423T		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	423	Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						GAGCTGCGCAAGCAGCTCAAG	0.597												
GALNT7	51809	broad.mit.edu	37	4	174219377	174219377	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:174219377T>C	uc003isz.3	+	6	1160	c.1077T>C	c.(1075-1077)AGT>AGC	p.S359S	GALNT7_uc011ckb.1_Intron	NM_017423	NP_059119	Q86SF2	GALT7_HUMAN	polypeptide N-acetylgalactosaminyltransferase 7	359	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(1)	1		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;1.87e-18)|Epithelial(43;3.44e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-09)|STAD - Stomach adenocarcinoma(60;0.0019)|GBM - Glioblastoma multiforme(59;0.0119)|LUSC - Lung squamous cell carcinoma(193;0.0199)		GGGATTGGAGTATGCTCTGGA	0.448												
MORF4	10934	broad.mit.edu	37	4	174537650	174537650	+	Silent	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:174537650T>G	uc011cke.1	-	1	145	c.145A>C	c.(145-147)AGG>CGG	p.R49R		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		ACCTGGGCCCTTTTCTTTCGA	0.403												
ADAM29	11086	broad.mit.edu	37	4	175897057	175897057	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:175897057A>G	uc003iuc.2	+	5	1051	c.381A>G	c.(379-381)TTA>TTG	p.L127L	ADAM29_uc003iud.2_Silent_p.L127L|ADAM29_uc010irr.2_Silent_p.L127L|ADAM29_uc011cki.1_Silent_p.L127L	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	127					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		AAGGAATATTACAGATAAATG	0.403												
ADAM29	11086	broad.mit.edu	37	4	175897485	175897485	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:175897485G>A	uc003iuc.2	+	5	1479	c.809G>A	c.(808-810)TGC>TAC	p.C270Y	ADAM29_uc003iud.2_Missense_Mutation_p.C270Y|ADAM29_uc010irr.2_Missense_Mutation_p.C270Y|ADAM29_uc011cki.1_Missense_Mutation_p.C270Y	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	270	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		CACCTGTATTGCAAGTGGAAG	0.413												
ODZ3	55714	broad.mit.edu	37	4	183603166	183603166	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:183603166C>T	uc003ivd.1	+	10	2071	c.2034C>T	c.(2032-2034)AAC>AAT	p.N678N	ODZ3_uc003ive.1_Silent_p.N84N	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	678	Extracellular (Potential).|EGF-like 6.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ACTGCTCAAACGGTGAGGTTA	0.433												
ODZ3	55714	broad.mit.edu	37	4	183664498	183664498	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:183664498T>A	uc003ivd.1	+	18	3592	c.3555T>A	c.(3553-3555)AGT>AGA	p.S1185R	ODZ3_uc003ive.1_Missense_Mutation_p.S591R	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1185	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TCGATGGCAGTCTGTACGTAG	0.493												
ODZ3	55714	broad.mit.edu	37	4	183675540	183675540	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:183675540A>G	uc003ivd.1	+	21	4057	c.4020A>G	c.(4018-4020)GTA>GTG	p.V1340V	ODZ3_uc003ive.1_Silent_p.V753V	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1340	Extracellular (Potential).|NHL 3.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TTATTAAGGTACGTCTGGAAT	0.378												
ODZ3	55714	broad.mit.edu	37	4	183710405	183710405	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:183710405A>G	uc003ivd.1	+	24	5501	c.5464A>G	c.(5464-5466)ACC>GCC	p.T1822A		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1822	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CGTCAATGTCACCTATTCATC	0.542												
ODZ3	55714	broad.mit.edu	37	4	183721189	183721189	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:183721189C>T	uc003ivd.1	+	27	7822	c.7785C>T	c.(7783-7785)GAC>GAT	p.D2595D		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2595	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GGTTCGCGGACGTGGAGATGC	0.697												
CCDC111	201973	broad.mit.edu	37	4	185593425	185593425	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:185593425T>C	uc003iwk.2	+	7	1088	c.655T>C	c.(655-657)TTT>CTT	p.F219L	CCDC111_uc010isd.1_RNA|CCDC111_uc003iwj.2_Missense_Mutation_p.F219L|CCDC111_uc003iwl.2_Missense_Mutation_p.F219L|CCDC111_uc003iwm.2_Missense_Mutation_p.F90L|CCDC111_uc003iwn.2_Missense_Mutation_p.F44L	NM_152683	NP_689896	Q96LW4	CC111_HUMAN	coiled-coil domain containing 111	219					DNA replication, synthesis of RNA primer		DNA primase activity			central_nervous_system(1)	1		all_lung(41;9.65e-12)|Lung NSC(41;1.64e-11)|Colorectal(36;0.00531)|Hepatocellular(41;0.00932)|Renal(120;0.0246)|Prostate(90;0.0283)|all_hematologic(60;0.0749)|all_neural(102;0.131)		all cancers(43;5.84e-27)|Epithelial(43;2.2e-23)|OV - Ovarian serous cystadenocarcinoma(60;4.28e-11)|STAD - Stomach adenocarcinoma(60;2.66e-05)|GBM - Glioblastoma multiforme(59;3.03e-05)|Colorectal(24;7.57e-05)|BRCA - Breast invasive adenocarcinoma(30;0.000249)|COAD - Colon adenocarcinoma(29;0.000502)|LUSC - Lung squamous cell carcinoma(40;0.00995)|READ - Rectum adenocarcinoma(43;0.173)		ATTTCCCCATTTTTCAGAAGC	0.413												
HELT	391723	broad.mit.edu	37	4	185940960	185940960	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:185940960A>G	uc011ckq.1	+	3	447	c.447A>G	c.(445-447)GCA>GCG	p.A149A	HELT_uc011cko.1_Silent_p.A64A|HELT_uc003ixa.3_Silent_p.A64A|HELT_uc011ckp.1_Silent_p.A8A	NM_001029887	NP_001025058	A6NFD8	HELT_HUMAN	HES/HEY-like transcription factor	149	Helix-loop-helix motif.						DNA binding				0		all_lung(41;9.65e-12)|Lung NSC(41;1.64e-11)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;8.92e-26)|Epithelial(43;3.02e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-11)|Colorectal(24;4.79e-05)|BRCA - Breast invasive adenocarcinoma(30;7.72e-05)|GBM - Glioblastoma multiforme(59;0.000274)|COAD - Colon adenocarcinoma(29;0.000362)|STAD - Stomach adenocarcinoma(60;0.000756)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		ACCTGAGAGCACTGCACTCCG	0.642												
SNX25	83891	broad.mit.edu	37	4	186274723	186274723	+	Missense_Mutation	SNP	A	A	G	rs149097763		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:186274723A>G	uc003ixh.2	+	15	2248	c.2059A>G	c.(2059-2061)ATG>GTG	p.M687V	SNX25_uc010ish.2_Missense_Mutation_p.M403V|SNX25_uc003ixi.2_Missense_Mutation_p.M191V	NM_031953	NP_114159	Q9H3E2	SNX25_HUMAN	sorting nexin 25	687					cell communication|protein transport	endosome membrane	phosphatidylinositol binding|signal transducer activity			ovary(2)|breast(2)|pancreas(1)	5		all_lung(41;1.03e-13)|Lung NSC(41;2.5e-13)|Hepatocellular(41;0.00826)|Colorectal(36;0.00886)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.243)		all cancers(43;2.13e-24)|Epithelial(43;6.15e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.6e-11)|BRCA - Breast invasive adenocarcinoma(30;0.00013)|Colorectal(24;0.000165)|GBM - Glioblastoma multiforme(59;0.000357)|COAD - Colon adenocarcinoma(29;0.000887)|STAD - Stomach adenocarcinoma(60;0.00118)|LUSC - Lung squamous cell carcinoma(40;0.0129)|READ - Rectum adenocarcinoma(43;0.228)		ACCATGTTTCATGTTGATTGG	0.408												
PDLIM3	27295	broad.mit.edu	37	4	186435463	186435463	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:186435463T>C	uc003ixw.3	-	4	483	c.359A>G	c.(358-360)AAT>AGT	p.N120S	PDLIM3_uc003ixx.3_Intron|PDLIM3_uc010isi.2_Intron|PDLIM3_uc003ixy.2_Missense_Mutation_p.I183V|PDLIM3_uc003ixz.2_Missense_Mutation_p.I183V	NM_014476	NP_055291	Q53GG5	PDLI3_HUMAN	PDZ and LIM domain protein 3 isoform a	120						sarcomere	zinc ion binding			ovary(2)	2		all_lung(41;1.03e-13)|Lung NSC(41;2.49e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.00996)|Colorectal(36;0.0161)|all_hematologic(60;0.0592)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.4e-10)|BRCA - Breast invasive adenocarcinoma(30;8.64e-05)|GBM - Glioblastoma multiforme(59;0.000167)|STAD - Stomach adenocarcinoma(60;0.000828)|LUSC - Lung squamous cell carcinoma(40;0.00984)|COAD - Colon adenocarcinoma(29;0.0115)|READ - Rectum adenocarcinoma(43;0.171)		GGGCCGAATATTATGCTTGTG	0.458												
SORBS2	8470	broad.mit.edu	37	4	186533064	186533064	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:186533064C>A	uc003iyl.2	-	18	3812	c.2954G>T	c.(2953-2955)AGA>ATA	p.R985I	SORBS2_uc003iyh.2_Missense_Mutation_p.R709I|SORBS2_uc011ckw.1_Missense_Mutation_p.R546I|SORBS2_uc003iyi.2_Missense_Mutation_p.R616I|SORBS2_uc011ckx.1_Missense_Mutation_p.R551I|SORBS2_uc003iyk.2_Missense_Mutation_p.R529I|SORBS2_uc003iym.2_Missense_Mutation_p.R1085I|SORBS2_uc003iyn.1_Missense_Mutation_p.R576I|SORBS2_uc011cku.1_Missense_Mutation_p.R377I|SORBS2_uc011ckv.1_Missense_Mutation_p.R889I|SORBS2_uc003iyd.2_Missense_Mutation_p.R684I|SORBS2_uc003iye.2_Missense_Mutation_p.R558I|SORBS2_uc003iya.2_Missense_Mutation_p.R505I|SORBS2_uc003iyb.2_Missense_Mutation_p.R458I|SORBS2_uc003iyc.2_Missense_Mutation_p.R438I|SORBS2_uc003iyg.2_Missense_Mutation_p.R1099I|SORBS2_uc003iyf.2_Missense_Mutation_p.R521I|SORBS2_uc003iyo.1_Missense_Mutation_p.R434I	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	985	SH3 2.					actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		GATGCCTTGTCTGTTGGTTCC	0.413												
SORBS2	8470	broad.mit.edu	37	4	186544622	186544622	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:186544622T>C	uc003iyl.2	-	13	2807	c.1949A>G	c.(1948-1950)CAC>CGC	p.H650R	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Missense_Mutation_p.H750R|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Missense_Mutation_p.H554R|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Missense_Mutation_p.H764R|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	650	His-rich.					actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		GAggtggcggtggtggtggtg	0.383												
TLR3	7098	broad.mit.edu	37	4	187000110	187000110	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:187000110A>G	uc003iyq.2	+	3	659	c.558A>G	c.(556-558)CTA>CTG	p.L186L	TLR3_uc011ckz.1_5'Flank	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	186	Lumenal (Potential).|LRR 6.				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		TTCAAGCGCTAAAAAGTGAAG	0.308												
TLR3	7098	broad.mit.edu	37	4	187005313	187005313	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:187005313C>T	uc003iyq.2	+	4	2574	c.2473C>T	c.(2473-2475)CCA>TCA	p.P825S	TLR3_uc011ckz.1_Missense_Mutation_p.P548S|TLR3_uc003iyr.2_Missense_Mutation_p.P548S	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	825	Cytoplasmic (Potential).|TIR.				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		ATTAAAAGACCCATTATGCAA	0.254												
FAT1	2195	broad.mit.edu	37	4	187549306	187549306	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:187549306A>G	uc003izf.2	-	9	4998	c.4810_splice	c.e9+1	p.G1604_splice		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor						actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CTCCAAAAGTACCTGACTCGA	0.423										HNSCC(5;0.00058)		
SDHA	6389	broad.mit.edu	37	5	240561	240561	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:240561A>G	uc003jao.3	+	11	1636	c.1521A>G	c.(1519-1521)AGA>AGG	p.R507R	SDHA_uc011clv.1_Silent_p.R507R|SDHA_uc011clw.1_Silent_p.R459R|SDHA_uc003jap.3_Silent_p.R507R|SDHA_uc003jaq.3_Silent_p.R282R|SDHA_uc003jar.3_Silent_p.R101R	NM_004168	NP_004159	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A,	507					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity				0			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	GAAGCATAAGAACATCGGAAC	0.453									Familial_Paragangliomas			
CEP72	55722	broad.mit.edu	37	5	635582	635582	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:635582T>C	uc003jbf.2	+	6	859	c.787T>C	c.(787-789)TGC>CGC	p.C263R	CEP72_uc011clz.1_RNA	NM_018140	NP_060610	Q9P209	CEP72_HUMAN	centrosomal protein 72 kDa	263					G2/M transition of mitotic cell cycle|gamma-tubulin complex localization|spindle organization	centrosome|cytosol				ovary(1)	1			Epithelial(17;0.000339)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|Lung(60;0.0863)			CTGCAGAGGGTGCTGTCTGGA	0.612												
TPPP	11076	broad.mit.edu	37	5	678016	678016	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:678016C>T	uc003jbg.3	-	1	878	c.160G>A	c.(160-162)GCC>ACC	p.A54T	TPPP_uc003jbh.3_Missense_Mutation_p.A54T	NM_007030	NP_008961	O94811	TPPP_HUMAN	tubulin polymerization promoting protein	54	Mediates interaction with LIMK1.				microtubule bundle formation|microtubule polymerization|positive regulation of protein polymerization	nucleus|perinuclear region of cytoplasm|soluble fraction	calcium ion binding|microtubule binding				0		Ovarian(839;0.0563)	Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)	GBM - Glioblastoma multiforme(108;0.0191)		CGCCGGAAGGCCTCCTCCAGG	0.677												
TRIP13	9319	broad.mit.edu	37	5	908157	908157	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:908157A>G	uc003jbr.2	+	8	837	c.727A>G	c.(727-729)AAA>GAA	p.K243E	TRIP13_uc010ite.1_Missense_Mutation_p.K243E	NM_004237	NP_004228	Q15645	PCH2_HUMAN	thyroid hormone receptor interactor 13	243					double-strand break repair|reciprocal meiotic recombination|synaptonemal complex assembly|transcription from RNA polymerase II promoter		ATP binding|identical protein binding|nucleoside-triphosphatase activity|transcription cofactor activity				0			Epithelial(17;0.00147)|OV - Ovarian serous cystadenocarcinoma(19;0.00271)|all cancers(22;0.00622)|Lung(60;0.165)			GATTGATGATAAAGACGCCCT	0.463												
TRIP13	9319	broad.mit.edu	37	5	916037	916037	+	Silent	SNP	C	C	T	rs147247158		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:916037C>T	uc003jbr.2	+	12	1262	c.1152C>T	c.(1150-1152)AGC>AGT	p.S384S		NM_004237	NP_004228	Q15645	PCH2_HUMAN	thyroid hormone receptor interactor 13	384					double-strand break repair|reciprocal meiotic recombination|synaptonemal complex assembly|transcription from RNA polymerase II promoter		ATP binding|identical protein binding|nucleoside-triphosphatase activity|transcription cofactor activity				0			Epithelial(17;0.00147)|OV - Ovarian serous cystadenocarcinoma(19;0.00271)|all cancers(22;0.00622)|Lung(60;0.165)			AGGGCCTCAGCGGCCGGGTCC	0.537												
NKD2	85409	broad.mit.edu	37	5	1037966	1037966	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:1037966G>A	uc003jbt.1	+	10	839	c.834G>A	c.(832-834)TCG>TCA	p.S278S	NKD2_uc010itf.1_3'UTR	NM_033120	NP_149111	Q969F2	NKD2_HUMAN	naked cuticle homolog 2	278					exocytosis|Wnt receptor signaling pathway	cytoplasmic membrane-bounded vesicle|plasma membrane	calcium ion binding|ubiquitin protein ligase binding				0	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;3.28e-09)		Epithelial(17;0.00093)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00417)|Lung(60;0.165)			GCAGGGCCTCGCACCTCCAGG	0.667												
SLC6A19	340024	broad.mit.edu	37	5	1221330	1221330	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:1221330C>T	uc003jbw.3	+	11	1659	c.1603C>T	c.(1603-1605)CGC>TGC	p.R535C		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	535	Helical; Name=11; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			AGTCACGTGGCGCGTGGTCAG	0.557												
CLPTM1L	81037	broad.mit.edu	37	5	1331946	1331946	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:1331946T>C	uc003jch.2	-	8	990	c.944A>G	c.(943-945)AAG>AGG	p.K315R	CLPTM1L_uc003jcg.2_Missense_Mutation_p.K182R	NM_030782	NP_110409	Q96KA5	CLP1L_HUMAN	CLPTM1-like	315	Cytoplasmic (Potential).				apoptosis	integral to membrane				breast(1)|central_nervous_system(1)	2	Lung NSC(6;5.78e-14)|all_lung(6;4.47e-13)|all_epithelial(6;4.47e-09)		Epithelial(17;0.00931)|OV - Ovarian serous cystadenocarcinoma(19;0.0116)|all cancers(22;0.0181)	KIRC - Kidney renal clear cell carcinoma(5;0.177)|Kidney(13;0.208)		CATGCTCTTCTTCTTCTTCCA	0.527												
IRX1	79192	broad.mit.edu	37	5	3600153	3600153	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:3600153A>G	uc003jde.2	+	2	1143	c.1091A>G	c.(1090-1092)TAC>TGC	p.Y364C		NM_024337	NP_077313	P78414	IRX1_HUMAN	iroquois homeobox protein 1	364						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						CACGGACTGTACACCTGCCAC	0.483												
ADAMTS16	170690	broad.mit.edu	37	5	5235263	5235263	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:5235263C>T	uc003jdl.2	+	13	2125	c.1987C>T	c.(1987-1989)CGG>TGG	p.R663W	ADAMTS16_uc003jdk.1_Missense_Mutation_p.R663W|ADAMTS16_uc010itk.1_RNA	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	663	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						ATTCAGAGGGCGGCACTACAA	0.478												
KIAA0947	23379	broad.mit.edu	37	5	5473675	5473675	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:5473675C>T	uc003jdm.3	+	16	6449	c.6227C>T	c.(6226-6228)GCC>GTC	p.A2076V		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	2076										ovary(1)|central_nervous_system(1)	2						TGCTAGAATGCCCCGGTAGAT	0.333												
FASTKD3	79072	broad.mit.edu	37	5	7867338	7867338	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:7867338T>C	uc003jeb.2	-	2	996	c.859A>G	c.(859-861)ATA>GTA	p.I287V	FASTKD3_uc011cmp.1_5'UTR|FASTKD3_uc003jec.2_Intron|MTRR_uc010itn.1_5'Flank|MTRR_uc003jee.3_5'Flank|MTRR_uc003jed.2_5'Flank|MTRR_uc003jef.3_5'Flank|MTRR_uc003jeg.3_5'Flank|MTRR_uc010ito.2_5'Flank	NM_024091	NP_076996	Q14CZ7	FAKD3_HUMAN	FAST kinase domains 3	287					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(2)|breast(1)|pancreas(1)	4						TTGGAAACTATTGATAGGGAA	0.373												
SEMA5A	9037	broad.mit.edu	37	5	9136697	9136697	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:9136697C>A	uc003jek.2	-	13	2230	c.1518G>T	c.(1516-1518)TGG>TGT	p.W506C		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	506	Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						TTACCACATCCCAGCCACAGT	0.532												
CTNND2	1501	broad.mit.edu	37	5	11023012	11023012	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:11023012C>T	uc003jfa.1	-	17	3013	c.2868G>A	c.(2866-2868)TCG>TCA	p.S956S	CTNND2_uc010itt.2_Silent_p.S865S|CTNND2_uc011cmy.1_Silent_p.S619S|CTNND2_uc011cmz.1_Silent_p.S523S|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.S548S	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	956					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CTGTGTCATCCGACATGGCCT	0.517												
CTNND2	1501	broad.mit.edu	37	5	11199700	11199700	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:11199700G>A	uc003jfa.1	-	11	1980	c.1835C>T	c.(1834-1836)GCC>GTC	p.A612V	CTNND2_uc010itt.2_Missense_Mutation_p.A521V|CTNND2_uc011cmy.1_Missense_Mutation_p.A275V|CTNND2_uc011cmz.1_Missense_Mutation_p.A179V|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.A179V	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	612	ARM 3.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AGCTCCACAGGCACTACGGTG	0.512												
DNAH5	1767	broad.mit.edu	37	5	13721260	13721260	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:13721260G>A	uc003jfd.2	-	71	12170	c.12128C>T	c.(12127-12129)ACG>ATG	p.T4043M	DNAH5_uc003jfc.2_Missense_Mutation_p.T211M	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4043	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GATGAGTGGCGTCCGTGGATC	0.498									Kartagener_syndrome			
DNAH5	1767	broad.mit.edu	37	5	13923452	13923452	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:13923452C>T	uc003jfd.2	-	4	417	c.375G>A	c.(373-375)GGG>GGA	p.G125G	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	125	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACACACATACCCCAGTAAGAG	0.468									Kartagener_syndrome			
FAM105B	90268	broad.mit.edu	37	5	14692970	14692970	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:14692970T>C	uc003jfk.2	+	7	1024	c.872T>C	c.(871-873)ATG>ACG	p.M291T		NM_138348	NP_612357	Q96BN8	F105B_HUMAN	hypothetical protein LOC90268	291										ovary(2)	2	Lung NSC(4;0.00696)					CAGGTTGAAATGTTCCTTCTT	0.507												
FBXL7	23194	broad.mit.edu	37	5	15928130	15928130	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:15928130A>G	uc003jfn.1	+	3	740	c.259A>G	c.(259-261)ATG>GTG	p.M87V		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	87					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GACGGTGGCCATGGTGCACTC	0.667												
FBXL7	23194	broad.mit.edu	37	5	15928377	15928377	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:15928377C>T	uc003jfn.1	+	3	987	c.506C>T	c.(505-507)GCC>GTC	p.A169V		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	169					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GTGGACCGCGCCCTCAAGGTG	0.662												
MYO10	4651	broad.mit.edu	37	5	16670845	16670845	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:16670845C>T	uc003jft.3	-	39	6141	c.5673G>A	c.(5671-5673)CGG>CGA	p.R1891R	MYO10_uc011cnb.1_Silent_p.R520R|MYO10_uc011cnc.1_Silent_p.R770R|MYO10_uc011cnd.1_Silent_p.R1248R|MYO10_uc011cne.1_Silent_p.R1248R|MYO10_uc010itx.2_Silent_p.R1513R	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1891	FERM.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						TCCGGAAGCTCCGCCTCAGGG	0.582												
CDH18	1016	broad.mit.edu	37	5	19520773	19520773	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:19520773G>T	uc003jgc.2	-	9	1882	c.1505C>A	c.(1504-1506)CCT>CAT	p.P502H	CDH18_uc003jgd.2_Missense_Mutation_p.P502H|CDH18_uc011cnm.1_Missense_Mutation_p.P502H	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	502	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TACCTGGCCAGGCTTAGAATT	0.398												
CDH10	1008	broad.mit.edu	37	5	24488256	24488256	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:24488256A>G	uc003jgr.1	-	12	2215	c.1883T>C	c.(1882-1884)GTA>GCA	p.V628A	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	628	Helical; (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AAACAGTACTACTATAACTTG	0.353										HNSCC(23;0.051)		
CDH10	1008	broad.mit.edu	37	5	24593567	24593567	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:24593567T>A	uc003jgr.1	-	2	365	c.33A>T	c.(31-33)CTA>CTT	p.L11L	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	11					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		ATACCCAGAATAGAAACAGTA	0.408										HNSCC(23;0.051)		
CDH9	1007	broad.mit.edu	37	5	26885845	26885845	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:26885845C>T	uc003jgs.1	-	11	1929	c.1760G>A	c.(1759-1761)CGT>CAT	p.R587H	CDH9_uc011cnv.1_Missense_Mutation_p.R180H	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	587	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GGCACACACACGGATAGTGAG	0.483												
CDH6	1004	broad.mit.edu	37	5	31305309	31305309	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:31305309A>T	uc003jhe.1	+	7	1354	c.1028A>T	c.(1027-1029)TAT>TTT	p.Y343F	CDH6_uc003jhd.1_Missense_Mutation_p.Y343F	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	343	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						AAGAAAGTGTATACCCTTAAA	0.453												
PDZD2	23037	broad.mit.edu	37	5	32052721	32052721	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:32052721A>G	uc003jhl.2	+	9	2058	c.1670A>G	c.(1669-1671)TAC>TGC	p.Y557C	PDZD2_uc003jhm.2_Missense_Mutation_p.Y557C|PDZD2_uc011cnx.1_Missense_Mutation_p.Y383C	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	557					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						TTTTAGGAATACCACATTGTG	0.443												
PDZD2	23037	broad.mit.edu	37	5	32061149	32061149	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:32061149G>A	uc003jhl.2	+	14	2748	c.2360G>A	c.(2359-2361)CGC>CAC	p.R787H	PDZD2_uc003jhm.2_Missense_Mutation_p.R787H|PDZD2_uc011cnx.1_Missense_Mutation_p.R613H	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	787	PDZ 4.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GTCAACGTCCGCCATGCTGCT	0.537												
ZFR	51663	broad.mit.edu	37	5	32390499	32390499	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:32390499T>C	uc003jhr.1	-	12	2104	c.2024A>G	c.(2023-2025)CAA>CGA	p.Q675R	ZFR_uc011cny.1_5'Flank	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	675					multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		CCAATGATGTTGTTCTTCCTC	0.478												
NPR3	4883	broad.mit.edu	37	5	32712294	32712294	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:32712294T>C	uc003jhv.2	+	1	630	c.412T>C	c.(412-414)TAT>CAT	p.Y138H	NPR3_uc010iuo.2_Intron|NPR3_uc011cnz.1_Intron|NPR3_uc003jhu.2_Missense_Mutation_p.Y138H	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	138	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	AGTGTGCGAGTATGCAGCAGC	0.672												
NPR3	4883	broad.mit.edu	37	5	32712393	32712393	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:32712393T>C	uc003jhv.2	+	1	729	c.511T>C	c.(511-513)TAC>CAC	p.Y171H	NPR3_uc010iuo.2_Intron|NPR3_uc011cnz.1_Intron|NPR3_uc003jhu.2_Missense_Mutation_p.Y171H	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	171	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	GGACTCTGAGTACTCGCACCT	0.677												
TARS	6897	broad.mit.edu	37	5	33457407	33457407	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:33457407C>T	uc003jhy.2	+	9	1178	c.883C>T	c.(883-885)CAG>TAG	p.Q295*	TARS_uc011cob.1_Nonsense_Mutation_p.Q283*|TARS_uc010iup.1_Nonsense_Mutation_p.Q236*|TARS_uc011coc.1_Nonsense_Mutation_p.Q316*|TARS_uc003jhz.2_Nonsense_Mutation_p.Q191*|TARS_uc011cod.1_Nonsense_Mutation_p.Q174*	NM_152295	NP_689508	P26639	SYTC_HUMAN	threonyl-tRNA synthetase	295					threonyl-tRNA aminoacylation	cytosol	ATP binding|protein homodimerization activity|threonine-tRNA ligase activity			ovary(2)	2					L-Threonine(DB00156)	GGAGACTCTCCAGAGAATTTA	0.388												
ADAMTS12	81792	broad.mit.edu	37	5	33751615	33751615	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:33751615A>G	uc003jia.1	-	3	691	c.528T>C	c.(526-528)ATT>ATC	p.I176I	ADAMTS12_uc010iuq.1_Silent_p.I176I|ADAMTS12_uc003jib.1_Silent_p.I176I	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	176					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TCACGGGTTCAATGAAAAAGT	0.413										HNSCC(64;0.19)		
RAI14	26064	broad.mit.edu	37	5	34824309	34824309	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:34824309T>C	uc003jir.2	+	15	2558	c.2362T>C	c.(2362-2364)TCC>CCC	p.S788P	RAI14_uc010iur.2_Missense_Mutation_p.S759P|RAI14_uc011coj.1_Missense_Mutation_p.S788P|RAI14_uc003jis.2_Missense_Mutation_p.S791P|RAI14_uc003jit.2_Missense_Mutation_p.S788P|RAI14_uc011cok.1_Missense_Mutation_p.S780P	NM_015577	NP_056392	Q9P0K7	RAI14_HUMAN	retinoic acid induced 14 isoform a	788	Potential.					cell cortex|cytoskeleton	protein binding			ovary(1)	1	all_lung(31;0.000191)					ACCTCGGTCTTCCTATGAAAA	0.428												
AGXT2	64902	broad.mit.edu	37	5	35026572	35026572	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:35026572A>G	uc003jjf.2	-	8	892	c.813T>C	c.(811-813)GAT>GAC	p.D271D	AGXT2_uc003jje.1_5'Flank|AGXT2_uc011com.1_Silent_p.D271D	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	271					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	TGCTCAGCGTATCTTTGAATT	0.393												
UGT3A1	133688	broad.mit.edu	37	5	35957483	35957483	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:35957483C>T	uc003jjv.1	-	5	1039	c.882G>A	c.(880-882)GGG>GGA	p.G294G	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Silent_p.G294G|UGT3A1_uc011cor.1_Silent_p.G260G	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	294	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CAAGGACAAACCCTGCATCCC	0.488												
UGT3A2	167127	broad.mit.edu	37	5	36035842	36035842	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:36035842A>G	uc003jjz.1	-	7	1623	c.1530T>C	c.(1528-1530)GCT>GCC	p.A510A	UGT3A2_uc011cos.1_Silent_p.A476A|UGT3A2_uc011cot.1_Silent_p.A208A	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	510	Cytoplasmic (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GCCACCAGACAGCCATGCCCA	0.587												
UGT3A2	167127	broad.mit.edu	37	5	36064364	36064364	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:36064364A>G	uc003jjz.1	-	2	276	c.183T>C	c.(181-183)GGT>GGC	p.G61G	UGT3A2_uc011cos.1_Intron|UGT3A2_uc011cot.1_5'UTR	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	61	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GCATAAAAGGACCTCTTTTGT	0.398												
NIPBL	25836	broad.mit.edu	37	5	36985832	36985832	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:36985832T>C	uc003jkl.3	+	10	3049	c.2550T>C	c.(2548-2550)AGT>AGC	p.S850S	NIPBL_uc003jkk.3_Silent_p.S850S|NIPBL_uc003jkm.1_Silent_p.S729S	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	850					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			GATCCTCTAGTAGAAATGAAC	0.408												
NIPBL	25836	broad.mit.edu	37	5	37024793	37024793	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:37024793G>A	uc003jkl.3	+	30	6180	c.5681G>A	c.(5680-5682)CGC>CAC	p.R1894H	NIPBL_uc003jkk.3_Missense_Mutation_p.R1894H	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	1894					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AAAATGATTCGCAGAGTCAAT	0.299												
WDR70	55100	broad.mit.edu	37	5	37703147	37703147	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:37703147T>C	uc003jkv.2	+	13	1432	c.1374T>C	c.(1372-1374)CGT>CGC	p.R458R		NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	458	WD 6.									ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCTTTGAGCGTAGGACTTTCC	0.423												
EGFLAM	133584	broad.mit.edu	37	5	38407115	38407115	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:38407115A>G	uc003jlc.1	+	8	1338	c.1014A>G	c.(1012-1014)ATA>ATG	p.I338M	EGFLAM_uc003jlb.1_Missense_Mutation_p.I338M|EGFLAM_uc003jle.1_Missense_Mutation_p.I104M|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	338						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GTGTGGCCATAATGTCAAGGC	0.547												
EGFLAM	133584	broad.mit.edu	37	5	38464058	38464058	+	Silent	SNP	G	G	A	rs17855226		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:38464058G>A	uc003jlc.1	+	23	3348	c.3024G>A	c.(3022-3024)GGG>GGA	p.G1008G	EGFLAM_uc003jlb.1_Silent_p.G1000G|EGFLAM_uc003jle.1_Silent_p.G766G|EGFLAM_uc003jlf.1_Silent_p.G366G|EGFLAM_uc003jlg.1_Silent_p.G143G|EGFLAM_uc003jlh.1_Silent_p.G90G	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	1008	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					CCGTGGATGGGAAAAACATCA	0.527												
LIFR	3977	broad.mit.edu	37	5	38506631	38506631	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:38506631A>G	uc010ive.1	-	8	1427	c.1095T>C	c.(1093-1095)CGT>CGC	p.R365R	LIFR_uc003jli.2_Silent_p.R365R	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	365	Fibronectin type-III 2.|Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					AGCTTGTAGCACGTGGGCCCA	0.418			T	PLAG1	salivary adenoma							
OSMR	9180	broad.mit.edu	37	5	38932047	38932047	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:38932047T>C	uc003jln.1	+	16	2642	c.2275T>C	c.(2275-2277)TGC>CGC	p.C759R	OSMR_uc011cpj.1_Intron	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	759	Helical; (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					CATGGTCATGTGCTACTTGAA	0.388												
DAB2	1601	broad.mit.edu	37	5	39376963	39376963	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:39376963T>C	uc003jlx.2	-	12	2457	c.1926A>G	c.(1924-1926)CCA>CCG	p.P642P	DAB2_uc003jlw.2_Silent_p.P621P	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	642					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			TATCCCCAAGTGGGTCTAAGG	0.552											OREG0016586	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
DAB2	1601	broad.mit.edu	37	5	39377133	39377133	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:39377133T>C	uc003jlx.2	-	12	2287	c.1756A>G	c.(1756-1758)ACA>GCA	p.T586A	DAB2_uc003jlw.2_Missense_Mutation_p.T565A	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	586					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			GGGCTTGTTGTTGACCAAGCA	0.552											OREG0016586	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
HEATR7B2	133558	broad.mit.edu	37	5	41015568	41015568	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:41015568T>G	uc003jmj.3	-	29	3387	c.2897A>C	c.(2896-2898)GAA>GCA	p.E966A	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E521A	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	966	HEAT 10.						binding			ovary(6)|central_nervous_system(2)	8						TCTTTCCACTTCCAAGTGAAT	0.388												
FBXO4	26272	broad.mit.edu	37	5	41927177	41927177	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:41927177T>C	uc003jmq.2	+	2	308	c.252T>C	c.(250-252)AGT>AGC	p.S84S	FBXO4_uc003jmp.2_Silent_p.S84S|FBXO4_uc003jmr.2_Silent_p.S84S	NM_012176	NP_036308	Q9UKT5	FBX4_HUMAN	F-box only protein 4 isoform 1	84	F-box.				positive regulation of protein ubiquitination|protein polyubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|telomere maintenance|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	protein binding|protein homodimerization activity|ubiquitin-protein ligase activity			liver(1)	1		Lung NSC(810;4.15e-05)|Breast(839;0.00093)|Ovarian(839;0.00965)|Myeloproliferative disorder(839;0.0255)|all_neural(839;0.0604)				AGTTGGGAAGTACAAATCATT	0.383												
ZNF131	7690	broad.mit.edu	37	5	43161820	43161820	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:43161820A>G	uc011cpw.1	+	5	877	c.841A>G	c.(841-843)AAA>GAA	p.K281E	ZNF131_uc010ivl.1_Missense_Mutation_p.K247E|ZNF131_uc003jnj.3_Missense_Mutation_p.K2E|ZNF131_uc003jnk.2_Missense_Mutation_p.K247E|ZNF131_uc003jnn.3_Missense_Mutation_p.K2E|ZNF131_uc003jnl.1_Intron|ZNF131_uc010ivm.1_Intron	NM_003432	NP_003423	P52739	ZN131_HUMAN	zinc finger protein 131	281	C2H2-type 1.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGAGCACATGAAATCACACTC	0.378												
NNT	23530	broad.mit.edu	37	5	43644365	43644365	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:43644365T>C	uc003joe.2	+	8	1291	c.1036T>C	c.(1036-1038)TTA>CTA	p.L346L	NNT_uc003jof.2_Silent_p.L346L	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	346	Mitochondrial matrix.				tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	TGTTGTGGATTTAGCTGCTGA	0.363												
MRPS30	10884	broad.mit.edu	37	5	44811164	44811164	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:44811164C>T	uc003joh.2	+	2	693	c.655C>T	c.(655-657)CGT>TGT	p.R219C	MRPS30_uc003joi.1_RNA	NM_016640	NP_057724	Q9NP92	RT30_HUMAN	mitochondrial ribosomal protein S30	219					apoptosis|translation	mitochondrion|ribosome	structural constituent of ribosome				0	Lung NSC(6;8.08e-07)					AATTATTCCTCGTGGTCATCG	0.363												
EMB	133418	broad.mit.edu	37	5	49699039	49699039	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:49699039A>G	uc003jom.2	-	6	1099	c.850T>C	c.(850-852)TAC>CAC	p.Y284H	EMB_uc010ivq.2_Missense_Mutation_p.Y78H|EMB_uc003jol.2_Missense_Mutation_p.Y215H|EMB_uc011cpy.1_Missense_Mutation_p.Y234H|EMB_uc010ivr.2_Missense_Mutation_p.Y230H	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	284	Cytoplasmic (Potential).					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				TTTTGTGTGTACTTTTCACAA	0.343												
DHX29	54505	broad.mit.edu	37	5	54569171	54569171	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:54569171T>C	uc003jpx.2	-	17	2845	c.2725A>G	c.(2725-2727)ACC>GCC	p.T909A	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	909	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				TGATCTTGGGTTGAAAGAATA	0.358												
DHX29	54505	broad.mit.edu	37	5	54591220	54591220	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:54591220T>C	uc003jpx.2	-	5	758	c.638A>G	c.(637-639)GAC>GGC	p.D213G	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	213							ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				ACTCTTAGGGTCCTCTTCATA	0.338												
GPBP1	65056	broad.mit.edu	37	5	56509990	56509990	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:56509990T>C	uc003jrh.3	+	3	1307	c.33T>C	c.(31-33)CTT>CTC	p.L11L	GPBP1_uc010iwg.2_Silent_p.L11L|GPBP1_uc003jri.3_Intron|GPBP1_uc003jrj.3_Silent_p.L11L|GPBP1_uc003jrk.3_Silent_p.L11L	NM_022913	NP_075064	Q86WP2	GPBP1_HUMAN	GC-rich promoter binding protein 1 isoform 1	11					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			large_intestine(1)|central_nervous_system(1)	2		Lung NSC(810;0.000861)|Prostate(74;0.0305)|Breast(144;0.222)		OV - Ovarian serous cystadenocarcinoma(10;7.64e-39)		CAGCCTGGCTTAATTTCCCTA	0.428												
KIF2A	3796	broad.mit.edu	37	5	61659541	61659541	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:61659541G>A	uc003jsy.3	+	14	1593	c.1282G>A	c.(1282-1284)GCA>ACA	p.A428T	KIF2A_uc003jsz.3_Missense_Mutation_p.A428T|KIF2A_uc010iwp.2_Missense_Mutation_p.A409T|KIF2A_uc003jsx.3_Missense_Mutation_p.A408T|KIF2A_uc010iwq.2_Missense_Mutation_p.A231T	NM_004520	NP_004511	O00139	KIF2A_HUMAN	kinesin heavy chain member 2 isoform 1	428	Kinesin-motor.				blood coagulation|cell differentiation|cell division|microtubule-based movement|mitotic prometaphase|mitotic spindle organization|nervous system development	centrosome|cytosol|microtubule|spindle pole	ATP binding|microtubule motor activity|protein binding				0		Lung NSC(810;8.94e-06)|Prostate(74;0.0132)|Ovarian(174;0.051)|Breast(144;0.077)		Lung(70;0.14)		TCAAACATCTGCAAATGCACA	0.333												
HTR1A	3350	broad.mit.edu	37	5	63256867	63256867	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:63256867C>T	uc011cqt.1	-	1	680	c.680G>A	c.(679-681)CGC>CAC	p.R227H		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	227	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity	p.R227H(1)		ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GACCGTCTTGCGGATGCGGAA	0.587												
RNF180	285671	broad.mit.edu	37	5	63509837	63509837	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:63509837A>G	uc003jti.2	+	4	794	c.684A>G	c.(682-684)TCA>TCG	p.S228S	RNF180_uc003jth.3_Silent_p.S228S|RNF180_uc010iws.2_Intron	NM_001113561	NP_001107033	Q86T96	RN180_HUMAN	ring finger protein 180 isoform 1	228	Cytoplasmic (Potential).					integral to membrane|nuclear envelope	zinc ion binding				0		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0848)|Colorectal(97;0.234)		Lung(70;0.114)		ATAGAAAATCACATAGTTTGG	0.383												
RGS7BP	401190	broad.mit.edu	37	5	63803674	63803674	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:63803674A>G	uc003jtj.2	+	2	302	c.302A>G	c.(301-303)CAG>CGG	p.Q101R		NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	101					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		ATGGCCCGTCAGGCACACCAA	0.493												
PPWD1	23398	broad.mit.edu	37	5	64879030	64879030	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:64879030A>G	uc003jtv.3	+	8	1523	c.1516A>G	c.(1516-1518)AAA>GAA	p.K506E	PPWD1_uc011cqv.1_Missense_Mutation_p.K476E|PPWD1_uc011cqw.1_Missense_Mutation_p.K350E	NM_015342	NP_056157	Q96BP3	PPWD1_HUMAN	peptidylprolyl isomerase domain and WD repeat	506	PPIase cyclophilin-type.				protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Lung NSC(167;7.21e-05)|Prostate(74;0.0174)|Ovarian(174;0.186)		Lung(70;0.00451)		CATTCACACCAAACTTTTTCC	0.373												
NLN	57486	broad.mit.edu	37	5	65084052	65084052	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:65084052A>G	uc003juf.2	+	8	1182	c.1066A>G	c.(1066-1068)ATC>GTC	p.I356V	NLN_uc003jue.2_Missense_Mutation_p.I356V|NLN_uc003jug.2_Missense_Mutation_p.I185V|NLN_uc010iww.2_Missense_Mutation_p.I51V	NM_020726	NP_065777	Q9BYT8	NEUL_HUMAN	neurolysin precursor	356					proteolysis	mitochondrial intermembrane space	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		Lung NSC(167;7.21e-05)|Prostate(74;0.0174)|Ovarian(174;0.186)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0743)|Lung(70;0.00616)		TGATGGGAAAATCAATGCCTG	0.393												
ERBB2IP	55914	broad.mit.edu	37	5	65324153	65324153	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:65324153G>A	uc003juk.1	+	14	1496	c.1188G>A	c.(1186-1188)ATG>ATA	p.M396I	ERBB2IP_uc003juh.1_Missense_Mutation_p.M396I|ERBB2IP_uc003jui.1_Missense_Mutation_p.M396I|ERBB2IP_uc003juj.1_Missense_Mutation_p.M396I|ERBB2IP_uc011cqx.1_Missense_Mutation_p.M396I|ERBB2IP_uc011cqy.1_Missense_Mutation_p.M396I|ERBB2IP_uc011cqz.1_Missense_Mutation_p.M396I|ERBB2IP_uc010iwx.1_Missense_Mutation_p.M396I|ERBB2IP_uc003jul.1_Missense_Mutation_p.M396I	NM_018695	NP_061165	Q96RT1	LAP2_HUMAN	ERBB2 interacting protein isoform 2	396	LRR 17.				basal protein localization|cell adhesion|cell cycle|cell growth|epidermal growth factor receptor signaling pathway|establishment or maintenance of epithelial cell apical/basal polarity|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization	basement membrane|cytoplasm|hemidesmosome|nucleus	ErbB-2 class receptor binding|integrin binding|structural constituent of cytoskeleton			ovary(3)|lung(2)|central_nervous_system(2)	7		Lung NSC(167;9.45e-06)|Prostate(74;0.0139)|Ovarian(174;0.0547)|Breast(144;0.093)|Colorectal(97;0.234)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0767)|Lung(70;0.00191)		TGACAGCTATGTGGCTCTCAG	0.303												
ERBB2IP	55914	broad.mit.edu	37	5	65350643	65350643	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:65350643G>A	uc003juk.1	+	21	3805	c.3497G>A	c.(3496-3498)CGG>CAG	p.R1166Q	ERBB2IP_uc003jui.1_Missense_Mutation_p.R1166Q|ERBB2IP_uc003juj.1_Missense_Mutation_p.R1166Q|ERBB2IP_uc011cqx.1_Missense_Mutation_p.R1166Q|ERBB2IP_uc011cqy.1_Missense_Mutation_p.R1166Q|ERBB2IP_uc011cqz.1_Intron|ERBB2IP_uc010iwx.1_Missense_Mutation_p.R1162Q|ERBB2IP_uc003jul.1_Missense_Mutation_p.R1162Q	NM_018695	NP_061165	Q96RT1	LAP2_HUMAN	ERBB2 interacting protein isoform 2	1166					basal protein localization|cell adhesion|cell cycle|cell growth|epidermal growth factor receptor signaling pathway|establishment or maintenance of epithelial cell apical/basal polarity|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization	basement membrane|cytoplasm|hemidesmosome|nucleus	ErbB-2 class receptor binding|integrin binding|structural constituent of cytoskeleton			ovary(3)|lung(2)|central_nervous_system(2)	7		Lung NSC(167;9.45e-06)|Prostate(74;0.0139)|Ovarian(174;0.0547)|Breast(144;0.093)|Colorectal(97;0.234)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0767)|Lung(70;0.00191)		AATTATTCACGGACTAGTCCT	0.403												
CD180	4064	broad.mit.edu	37	5	66478818	66478818	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:66478818A>G	uc003juy.2	-	3	2001	c.1853T>C	c.(1852-1854)CTA>CCA	p.L618P		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	618	Extracellular (Potential).|LRRCT.				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		GACATCAGATAGCTTAACTCC	0.393												
CD180	4064	broad.mit.edu	37	5	66479818	66479818	+	Missense_Mutation	SNP	G	G	A	rs140099362		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:66479818G>A	uc003juy.2	-	3	1001	c.853C>T	c.(853-855)CGC>TGC	p.R285C		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	285	Extracellular (Potential).|LRR 8.				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		TCAGAGAAGCGGTGTTCCTGC	0.473												
RAD17	5884	broad.mit.edu	37	5	68687758	68687758	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:68687758A>G	uc003jwo.2	+	10	1202	c.1140A>G	c.(1138-1140)GAA>GAG	p.E380E	RAD17_uc003jwg.2_Silent_p.E369E|RAD17_uc003jwh.2_Silent_p.E369E|RAD17_uc003jwi.2_Silent_p.E369E|RAD17_uc003jwj.2_Silent_p.E369E|RAD17_uc003jwk.2_Silent_p.E369E|RAD17_uc003jwl.2_Silent_p.E369E|RAD17_uc003jwm.2_Silent_p.E204E|RAD17_uc003jwn.2_Silent_p.E283E|RAD17_uc003jwp.2_5'Flank	NM_133339	NP_579917	O75943	RAD17_HUMAN	RAD17 homolog isoform 2	380					cell cycle|DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint|mitotic cell cycle checkpoint|negative regulation of DNA replication|regulation of phosphorylation	nucleoplasm	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Lung NSC(167;5.19e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;9.36e-57)|Epithelial(20;1.21e-52)|all cancers(19;3.34e-48)|Lung(70;0.0183)		GGGTTTTTGAAAATCAAGAGG	0.343								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes				
MARVELD2	153562	broad.mit.edu	37	5	68728430	68728430	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:68728430A>G	uc003jwq.2	+	4	1318	c.1259A>G	c.(1258-1260)AAA>AGA	p.K420R	MARVELD2_uc010ixf.2_Missense_Mutation_p.K408R|MARVELD2_uc003jwr.1_Missense_Mutation_p.K420R|MARVELD2_uc003jws.1_RNA	NM_001038603	NP_001033692	Q8N4S9	MALD2_HUMAN	MARVEL domain containing 2 isoform 1	420	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane|tight junction					0		Lung NSC(167;0.000937)|Prostate(74;0.0187)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;7.31e-57)|Epithelial(20;1.05e-52)|all cancers(19;2.63e-48)|Lung(70;0.0183)		GCAAAAATGAAACCTGAACTA	0.463												
ZNF366	167465	broad.mit.edu	37	5	71756026	71756026	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:71756026G>A	uc003kce.1	-	2	1484	c.1298C>T	c.(1297-1299)CCG>CTG	p.P433L		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	433	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GAGGTGGTGCGGCTGCACAAA	0.622												
TNPO1	3842	broad.mit.edu	37	5	72173153	72173153	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:72173153A>G	uc003kck.3	+	9	1047	c.900A>G	c.(898-900)GTA>GTG	p.V300V	TNPO1_uc011csi.1_RNA|TNPO1_uc011csj.1_Silent_p.V250V|TNPO1_uc003kch.2_Silent_p.V292V|TNPO1_uc003kci.3_Silent_p.V292V|TNPO1_uc003kcg.3_Silent_p.V292V	NM_002270	NP_002261	Q92973	TNPO1_HUMAN	transportin 1 isoform 1	300					interspecies interaction between organisms|mRNA metabolic process|protein import into nucleus, translocation	cytosol|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			skin(3)|urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)	7		Lung NSC(167;0.0053)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;6.14e-54)		GCAAAGATGTACTCGTAAGGC	0.343												
RGNEF	64283	broad.mit.edu	37	5	73048780	73048780	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:73048780G>A	uc011csq.1	+	3	239	c.228G>A	c.(226-228)TCG>TCA	p.S76S	RGNEF_uc003kcx.2_Silent_p.S76S|RGNEF_uc003kcy.1_Silent_p.S76S|RGNEF_uc010izf.2_Silent_p.S76S	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	76					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		GCCTCTGCTCGGAAGGTTACT	0.582												
ARSB	411	broad.mit.edu	37	5	78076471	78076471	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:78076471A>G	uc003kfq.2	-	8	2637	c.1351T>C	c.(1351-1353)TTC>CTC	p.F451L		NM_000046	NP_000037	P15848	ARSB_HUMAN	arylsulfatase B isoform 1 precursor	451					lysosomal transport|lysosome organization	lysosome	arylsulfatase activity|metal ion binding|N-acetylgalactosamine-4-sulfatase activity			upper_aerodigestive_tract(1)	1		all_lung(232;0.000637)|Lung NSC(167;0.00173)|Ovarian(174;0.0105)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;4.24e-44)|Epithelial(54;3.12e-39)|all cancers(79;3.02e-34)		GGTGGAGGGAACCAGTAACCA	0.488												
BHMT	635	broad.mit.edu	37	5	78423758	78423758	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:78423758G>A	uc003kfu.3	+	7	1094	c.989G>A	c.(988-990)AGC>AAC	p.S330N	BHMT_uc011cti.1_Missense_Mutation_p.S177N	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	330					protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	AAACATGGCAGCTGGGGAAGT	0.483												
JMY	133746	broad.mit.edu	37	5	78610597	78610597	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:78610597A>G	uc003kfx.3	+	9	3102	c.2582A>G	c.(2581-2583)CAC>CGC	p.H861R	JMY_uc003kfw.1_Missense_Mutation_p.H507R	NM_152405	NP_689618	Q8N9B5	JMY_HUMAN	junction-mediating and regulatory protein	861					'de novo' actin filament nucleation|actin polymerization-dependent cell motility|Arp2/3 complex-mediated actin nucleation|cell cycle arrest|DNA repair|induction of apoptosis|positive regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter	cell leading edge|cytoplasm|cytoskeleton|nucleus	actin binding|transcription coactivator activity				0		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;4.45e-45)|Epithelial(54;5.85e-40)|all cancers(79;2.89e-35)		CCCTCAGCACACCTCTTTGAC	0.522												
CMYA5	202333	broad.mit.edu	37	5	79031641	79031641	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:79031641C>T	uc003kgc.2	+	2	7125	c.7053C>T	c.(7051-7053)ATC>ATT	p.I2351I		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2351						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGCCAGCAATCGCTCCTCCAT	0.358												
CMYA5	202333	broad.mit.edu	37	5	79034494	79034494	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:79034494T>A	uc003kgc.2	+	2	9978	c.9906T>A	c.(9904-9906)TAT>TAA	p.Y3302*		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3302						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAGGTGTTTATGGGGAAGGAG	0.473												
CMYA5	202333	broad.mit.edu	37	5	79095361	79095361	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:79095361T>C	uc003kgc.2	+	13	12204	c.12132T>C	c.(12130-12132)CCT>CCC	p.P4044P		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	4044	B30.2/SPRY.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GTGTCCACCCTGCCTTTGCCC	0.498												
ZFYVE16	9765	broad.mit.edu	37	5	79770525	79770525	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:79770525C>G	uc003kgr.3	+	18	4639	c.4337C>G	c.(4336-4338)ACT>AGT	p.T1446S	ZFYVE16_uc003kgq.3_Missense_Mutation_p.T1446S|ZFYVE16_uc003kgs.3_Missense_Mutation_p.T1446S|ZFYVE16_uc003kgt.3_Missense_Mutation_p.T534S|ZFYVE16_uc003kgu.3_Missense_Mutation_p.T198S	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	1446					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		ATTTTATCAACTTCTTATCAG	0.338												
MSH3	4437	broad.mit.edu	37	5	80109433	80109433	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:80109433G>A	uc003kgz.2	+	20	2939	c.2686G>A	c.(2686-2688)GGA>AGA	p.G896R		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	896	ATP (Potential).				maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		GATAATTACCGGACCAAACAT	0.373								MMR				
MSH3	4437	broad.mit.edu	37	5	80160751	80160751	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:80160751A>G	uc003kgz.2	+	22	3373	c.3120A>G	c.(3118-3120)AAA>AAG	p.K1040K		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	1040					maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		ATGAAAGCAAACTGGATCCAG	0.378								MMR				
RASGRF2	5924	broad.mit.edu	37	5	80503095	80503095	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:80503095T>A	uc003kha.1	+	21	2998	c.2998T>A	c.(2998-3000)TCC>ACC	p.S1000T	RNU5E_uc011cto.1_Intron|RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	1000					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		ATGCTTTGAGTCCTTGTCGGC	0.557												
ZCCHC9	84240	broad.mit.edu	37	5	80607037	80607037	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:80607037T>A	uc003khj.2	+	5	769	c.636T>A	c.(634-636)GGT>GGA	p.G212G	RNU5E_uc011cto.1_Intron|ZCCHC9_uc003khk.3_Silent_p.G212G|ZCCHC9_uc003khi.2_Silent_p.G212G	NM_001131035	NP_001124507	Q8N567	ZCHC9_HUMAN	zinc finger, CCHC domain containing 9	212	CCHC-type 4.						nucleic acid binding|zinc ion binding			ovary(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;8.18e-45)|Epithelial(54;2.72e-39)|all cancers(79;7.33e-34)		TAGGTGGCGGTTGCAAACTTT	0.294												
VCAN	1462	broad.mit.edu	37	5	82816822	82816822	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:82816822T>C	uc003kii.3	+	7	3053	c.2697T>C	c.(2695-2697)GAT>GAC	p.D899D	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Silent_p.D899D|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	899	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		CTTTGAGAGATTCTACAACTG	0.413												
VCAN	1462	broad.mit.edu	37	5	82817461	82817461	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:82817461C>T	uc003kii.3	+	7	3692	c.3336C>T	c.(3334-3336)CAC>CAT	p.H1112H	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Silent_p.H1112H|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1112	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TAACTGAGCACAAAGTGAAAA	0.413												
VCAN	1462	broad.mit.edu	37	5	82832848	82832848	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:82832848A>G	uc003kii.3	+	8	4382	c.4026A>G	c.(4024-4026)GTA>GTG	p.V1342V	VCAN_uc003kij.3_Silent_p.V355V|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Silent_p.V6V	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1342	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		ATTTGAGTGTAATTGGTCATC	0.348												
VCAN	1462	broad.mit.edu	37	5	82835440	82835440	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:82835440C>T	uc003kii.3	+	8	6974	c.6618C>T	c.(6616-6618)TTC>TTT	p.F2206F	VCAN_uc003kij.3_Silent_p.F1219F|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Silent_p.F870F	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2206	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		CACATTTTTTCTTAGCTACTG	0.373												
EDIL3	10085	broad.mit.edu	37	5	83360623	83360623	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:83360623T>C	uc003kio.1	-	8	1267	c.848A>G	c.(847-849)AAC>AGC	p.N283S	EDIL3_uc003kip.1_Missense_Mutation_p.N273S|EDIL3_uc011ctt.1_Missense_Mutation_p.N60S	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	283	F5/8 type C 1.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		TGTGAAAGAGTTAGCATATGG	0.373												
TMEM161B	153396	broad.mit.edu	37	5	87536644	87536644	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:87536644T>C	uc003kjc.2	-	2	218	c.93A>G	c.(91-93)CTA>CTG	p.L31L	TMEM161B_uc011cty.1_Silent_p.L20L|TMEM161B_uc010jax.2_RNA|TMEM161B_uc011ctz.1_Intron	NM_153354	NP_699185	Q8NDZ6	T161B_HUMAN	transmembrane protein 161B	31						integral to membrane				skin(2)	2		all_cancers(142;0.000275)|Lung NSC(167;0.00901)|all_lung(232;0.0111)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;6.24e-36)|Epithelial(54;6.8e-31)|all cancers(79;1.07e-26)		CATTACAGAGTAGCCATCGAG	0.398												
GPR98	84059	broad.mit.edu	37	5	89949384	89949384	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:89949384C>T	uc003kju.2	+	20	4089	c.3993C>T	c.(3991-3993)ACC>ACT	p.T1331T	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1331	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGTACTTTACCGGACTAGAGG	0.443												
MCTP1	79772	broad.mit.edu	37	5	94288931	94288931	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:94288931A>G	uc003kkx.2	-	3	973	c.973T>C	c.(973-975)TAT>CAT	p.Y325H	MCTP1_uc003kkv.2_Missense_Mutation_p.Y104H|MCTP1_uc003kkw.2_Missense_Mutation_p.Y104H|MCTP1_uc003kkz.2_5'UTR	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	325	C2 1.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		ACCTTTATATACAATGGCTCC	0.353												
TTC37	9652	broad.mit.edu	37	5	94859446	94859446	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:94859446T>C	uc003klb.2	-	17	1815	c.1545A>G	c.(1543-1545)GGA>GGG	p.G515G	TTC37_uc010jbf.1_Silent_p.G467G	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	515	TPR 8.						binding			ovary(3)|pancreas(1)	4						TCCTATAACATCCACGAGCTC	0.393												
ARSK	153642	broad.mit.edu	37	5	94927320	94927320	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:94927320A>G	uc003kld.2	+	6	1245	c.1087A>G	c.(1087-1089)ACC>GCC	p.T363A	ARSK_uc010jbg.2_Missense_Mutation_p.T204A|ARSK_uc011cum.1_RNA	NM_198150	NP_937793	Q6UWY0	ARSK_HUMAN	arylsulfatase K precursor	363						extracellular region	arylsulfatase activity|metal ion binding			pancreas(1)	1		all_cancers(142;3.38e-06)|all_epithelial(76;6.57e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)		all cancers(79;6.5e-16)		TATTTACCCTACCATGCTTGG	0.398												
ELL2	22936	broad.mit.edu	37	5	95249473	95249473	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:95249473A>G	uc003klr.3	-	4	831	c.481_splice	c.e4+1	p.G161_splice		NM_012081	NP_036213	O00472	ELL2_HUMAN	elongation factor, RNA polymerase II, 2						regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter	transcription elongation factor complex				central_nervous_system(1)	1		all_cancers(142;2.04e-06)|all_epithelial(76;3.1e-09)|all_lung(232;0.00309)|Lung NSC(167;0.00454)|Ovarian(225;0.0165)|Colorectal(57;0.0343)|Breast(839;0.198)		all cancers(79;2.16e-15)		ATCTATACAAACCTACATATG	0.398												
LNPEP	4012	broad.mit.edu	37	5	96315402	96315402	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:96315402G>A	uc003kmv.1	+	2	1094	c.580G>A	c.(580-582)GTG>ATG	p.V194M	LNPEP_uc003kmw.1_Missense_Mutation_p.V180M	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	194	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		CAGGGGTTCTGTGACAATTTC	0.463												
LNPEP	4012	broad.mit.edu	37	5	96315595	96315595	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:96315595C>T	uc003kmv.1	+	2	1287	c.773C>T	c.(772-774)ACG>ATG	p.T258M	LNPEP_uc003kmw.1_Missense_Mutation_p.T244M	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	258	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		CACAATTATACGTTGAAGATA	0.418												
CHD1	1105	broad.mit.edu	37	5	98209302	98209302	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:98209302C>T	uc003knf.2	-	25	3714	c.3566G>A	c.(3565-3567)CGA>CAA	p.R1189Q	CHD1_uc010jbn.2_5'UTR	NM_001270	NP_001261	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	1189					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			lung(2)|ovary(1)|breast(1)|pancreas(1)	5		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	GTTACCTGTTCGTTCTGTTCC	0.313												
PPIP5K2	23262	broad.mit.edu	37	5	102494895	102494895	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:102494895A>G	uc003kod.3	+	17	2302	c.1783A>G	c.(1783-1785)ATG>GTG	p.M595V	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Missense_Mutation_p.M595V	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	595					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						TCTTGTTCAAATGGTGAAAAG	0.353												
MAN2A1	4124	broad.mit.edu	37	5	109181585	109181585	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:109181585T>C	uc003kou.1	+	18	3683	c.2720T>C	c.(2719-2721)CTG>CCG	p.L907P		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	907	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		AGAATGACACTGAGCAAATTG	0.368												
SLC25A46	91137	broad.mit.edu	37	5	110096994	110096994	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:110096994C>T	uc003koz.2	+	8	836	c.769C>T	c.(769-771)CGA>TGA	p.R257*	SLC25A46_uc011cvi.1_Nonsense_Mutation_p.R166*	NM_138773	NP_620128	Q96AG3	S2546_HUMAN	solute carrier family 25, member 46	257					transport	integral to membrane|mitochondrial inner membrane					0		all_cancers(142;0.00203)|all_epithelial(76;4.52e-05)|Prostate(80;0.0115)|Colorectal(57;0.0676)|Ovarian(225;0.156)		OV - Ovarian serous cystadenocarcinoma(64;2.58e-09)|Epithelial(69;7.29e-08)|all cancers(49;9.35e-06)|COAD - Colon adenocarcinoma(37;0.211)		TCATAGCAAACGACTTCTTCC	0.398												
SLC25A46	91137	broad.mit.edu	37	5	110097241	110097241	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:110097241A>G	uc003koz.2	+	8	1083	c.1016A>G	c.(1015-1017)CAC>CGC	p.H339R	SLC25A46_uc011cvi.1_Missense_Mutation_p.H248R	NM_138773	NP_620128	Q96AG3	S2546_HUMAN	solute carrier family 25, member 46	339	Solcar 2.				transport	integral to membrane|mitochondrial inner membrane					0		all_cancers(142;0.00203)|all_epithelial(76;4.52e-05)|Prostate(80;0.0115)|Colorectal(57;0.0676)|Ovarian(225;0.156)		OV - Ovarian serous cystadenocarcinoma(64;2.58e-09)|Epithelial(69;7.29e-08)|all cancers(49;9.35e-06)|COAD - Colon adenocarcinoma(37;0.211)		ACAGTTTTGCACCGCCTTCAC	0.398												
WDR36	134430	broad.mit.edu	37	5	110445992	110445992	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:110445992C>T	uc003kpd.2	+	13	1716	c.1599C>T	c.(1597-1599)GGC>GGT	p.G533G	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	533					response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		GAAGTTTTGGCAAGGATCAAG	0.358												
WDR36	134430	broad.mit.edu	37	5	110462497	110462497	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:110462497G>T	uc003kpd.2	+	23	2889	c.2772G>T	c.(2770-2772)CAG>CAT	p.Q924H	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	924					response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		TGTCATCCCAGGTGGAAGAAA	0.323												
APC	324	broad.mit.edu	37	5	112102935	112102935	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:112102935A>G	uc010jby.2	+	4	650	c.270A>G	c.(268-270)AAA>AAG	p.K90K	APC_uc011cvt.1_Silent_p.K100K|APC_uc003kpz.3_Silent_p.K90K|APC_uc003kpy.3_Silent_p.K90K|APC_uc010jbz.2_5'UTR	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	90	Leu-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity			large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		TGCGGTCAAAAATGTCCCTCC	0.403		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)		
APC	324	broad.mit.edu	37	5	112176628	112176628	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:112176628A>G	uc010jby.2	+	16	5717	c.5337A>G	c.(5335-5337)ATA>ATG	p.I1779M	APC_uc011cvt.1_Missense_Mutation_p.I1761M|APC_uc003kpz.3_Missense_Mutation_p.I1779M|APC_uc003kpy.3_Missense_Mutation_p.I1779M|APC_uc010jbz.2_Missense_Mutation_p.I1496M|APC_uc010jca.2_Missense_Mutation_p.I1079M	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1779	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.K1192fs*3(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		TAAAACCTATACCACAAAATA	0.358		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)		
REEP5	7905	broad.mit.edu	37	5	112222733	112222733	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:112222733C>T	uc003kqe.1	-	4	643	c.499G>A	c.(499-501)GCA>ACA	p.A167T	SRP19_uc011cvu.1_Intron|SRP19_uc011cvv.1_Intron|REEP5_uc011cvw.1_Missense_Mutation_p.A140T|REEP5_uc011cvx.1_RNA|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_RNA	NM_005669	NP_005660	Q00765	REEP5_HUMAN	receptor accessory protein 5	167						integral to membrane	protein binding				0		all_cancers(142;4.41e-05)|all_epithelial(76;3.65e-07)|Colorectal(10;0.00115)|Prostate(80;0.00133)|Ovarian(225;0.0443)		Epithelial(69;1.3e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.26e-08)|all cancers(49;3.56e-07)|Colorectal(14;0.00778)|COAD - Colon adenocarcinoma(37;0.013)		ATGGCATCTGCAGTCTCTTTG	0.502												
YTHDC2	64848	broad.mit.edu	37	5	112915375	112915375	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:112915375T>C	uc003kqn.2	+	24	3520	c.3337T>C	c.(3337-3339)TTC>CTC	p.F1113L		NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	1113							ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		GTGGCTCCATTTCACACTGGA	0.358												
TRIM36	55521	broad.mit.edu	37	5	114469592	114469592	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:114469592C>T	uc003kqs.2	-	8	2008	c.1499G>A	c.(1498-1500)AGC>AAC	p.S500N	TRIM36_uc011cwc.1_Missense_Mutation_p.S488N|TRIM36_uc003kqt.2_Missense_Mutation_p.S345N	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	500	Fibronectin type-III.					acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		CAATTCTCTGCTGCAAGGACT	0.373												
PGGT1B	5229	broad.mit.edu	37	5	114572137	114572137	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:114572137A>G	uc003kqw.3	-	5	583	c.562T>C	c.(562-564)TGG>CGG	p.W188R	PGGT1B_uc003kqx.3_Missense_Mutation_p.W65R|PGGT1B_uc010jch.2_Missense_Mutation_p.W188R	NM_005023	NP_005014	P53609	PGTB1_HUMAN	geranylgeranyltransferase type 1 beta	188					protein geranylgeranylation	CAAX-protein geranylgeranyltransferase complex	CAAX-protein geranylgeranyltransferase activity				0		all_cancers(142;0.000523)|all_epithelial(76;6.45e-06)|Prostate(80;0.00955)|Ovarian(225;0.0443)|all_lung(232;0.132)|Breast(839;0.195)		Epithelial(69;2.95e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.98e-08)|all cancers(49;3.1e-06)	Pravastatin(DB00175)	ATGCCTGACCAGTTGTTGAGC	0.363												
TMED7-TICAM2	100302736	broad.mit.edu	37	5	114916287	114916287	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:114916287T>C	uc003krd.2	-	4	1673	c.667A>G	c.(667-669)AAA>GAA	p.K223E	TMED7-TICAM2_uc003kre.2_Missense_Mutation_p.K392E|TICAM2_uc003krc.2_Missense_Mutation_p.K223E	NM_021649	NP_067681	Q86XR7	TCAM2_HUMAN	toll-like receptor adaptor molecule 2	223	TIR.				I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	Golgi apparatus|intrinsic to membrane|plasma membrane	protein binding|transmembrane receptor activity				0						CTTGTCTCTTTCCATATAGTT	0.353												
TMED7-TICAM2	100302736	broad.mit.edu	37	5	114916505	114916505	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:114916505T>C	uc003krd.2	-	4	1455	c.449A>G	c.(448-450)AAT>AGT	p.N150S	TMED7-TICAM2_uc003kre.2_Missense_Mutation_p.N319S|TICAM2_uc003krc.2_Missense_Mutation_p.N150S	NM_021649	NP_067681	Q86XR7	TCAM2_HUMAN	toll-like receptor adaptor molecule 2	150	TIR.				I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	Golgi apparatus|intrinsic to membrane|plasma membrane	protein binding|transmembrane receptor activity				0						GAACTGGAAATTACACCAAGT	0.413												
SEMA6A	57556	broad.mit.edu	37	5	115813736	115813736	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:115813736C>T	uc010jck.2	-	14	2251	c.1542G>A	c.(1540-1542)CGG>CGA	p.R514R	SEMA6A_uc003krx.3_Silent_p.R514R|SEMA6A_uc003krw.3_Silent_p.R46R|SEMA6A_uc010jcj.2_Silent_p.R58R	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	514	Extracellular (Potential).				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		ATCGTTCACACCGGCCAAGGG	0.463												
DMXL1	1657	broad.mit.edu	37	5	118485923	118485923	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:118485923G>A	uc003ksd.2	+	18	4582	c.4401G>A	c.(4399-4401)AAG>AAA	p.K1467K	DMXL1_uc010jcl.1_Silent_p.K1467K	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1467										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		AAAATACAAAGCCTAGAGTTA	0.373												
CEP120	153241	broad.mit.edu	37	5	122717893	122717893	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:122717893A>G	uc003ktk.2	-	15	2097	c.2015T>C	c.(2014-2016)CTG>CCG	p.L672P	CEP120_uc011cwq.1_Missense_Mutation_p.L481P|CEP120_uc010jcz.1_Missense_Mutation_p.L646P	NM_153223	NP_694955	Q8N960	CE120_HUMAN	coiled-coil domain containing 100	672	Potential.					centrosome				ovary(1)	1						TTTCTGCTTCAGCTACAAAAG	0.363												
CEP120	153241	broad.mit.edu	37	5	122726848	122726848	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:122726848C>T	uc003ktk.2	-	8	1076	c.994G>A	c.(994-996)GTG>ATG	p.V332M	CEP120_uc011cwq.1_Missense_Mutation_p.V141M|CEP120_uc010jcz.1_Missense_Mutation_p.V306M	NM_153223	NP_694955	Q8N960	CE120_HUMAN	coiled-coil domain containing 100	332						centrosome				ovary(1)	1						GACACTCCCACAGTTGGGGCT	0.537												
CSNK1G3	1456	broad.mit.edu	37	5	122911547	122911547	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:122911547T>C	uc003ktm.2	+	6	1282	c.563T>C	c.(562-564)TTG>TCG	p.L188S	CSNK1G3_uc003ktl.2_Missense_Mutation_p.L188S|CSNK1G3_uc003ktn.2_Missense_Mutation_p.L188S|CSNK1G3_uc003kto.2_Missense_Mutation_p.L188S|CSNK1G3_uc011cwr.1_Missense_Mutation_p.L113S|CSNK1G3_uc011cws.1_Missense_Mutation_p.L75S|CSNK1G3_uc010jda.2_Missense_Mutation_p.L188S	NM_004384	NP_004375	Q9Y6M4	KC1G3_HUMAN	casein kinase 1, gamma 3 isoform 1	188	Protein kinase.				Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity				0		all_cancers(142;0.0156)|Prostate(80;0.0322)|Lung NSC(810;0.245)	KIRC - Kidney renal clear cell carcinoma(527;0.165)|Kidney(363;0.229)	OV - Ovarian serous cystadenocarcinoma(64;0.000121)|Epithelial(69;0.000227)|all cancers(49;0.00176)		GATTTTGGTTTGGCAAAGGAA	0.363												
LMNB1	4001	broad.mit.edu	37	5	126156662	126156662	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:126156662T>C	uc003kud.1	+	7	1589	c.1221T>C	c.(1219-1221)CGT>CGC	p.R407R	LMNB1_uc010jdb.1_RNA|LMNB1_uc011cxb.1_Silent_p.R197R	NM_005573	NP_005564	P20700	LMNB1_HUMAN	lamin B1	407	Tail.				cellular component disassembly involved in apoptosis	lamin filament|nuclear inner membrane	protein binding|structural molecule activity			kidney(1)|central_nervous_system(1)	2		all_cancers(142;0.103)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.033)|OV - Ovarian serous cystadenocarcinoma(64;0.0398)|all cancers(49;0.0903)		CCTCAAGTCGTAGTGTACGTA	0.448												
FBN2	2201	broad.mit.edu	37	5	127599336	127599336	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:127599336C>T	uc003kuu.2	-	63	8412	c.7973G>A	c.(7972-7974)TGC>TAC	p.C2658Y		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2658	EGF-like 46; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GGGATTGGAGCATTCATTCTC	0.512												
FBN2	2201	broad.mit.edu	37	5	127647035	127647035	+	Silent	SNP	G	G	A	rs147452231	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:127647035G>A	uc003kuu.2	-	39	5470	c.5031C>T	c.(5029-5031)TGC>TGT	p.C1677C		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1677	EGF-like 27; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		AGCCTTGTGGGCACTCACACT	0.483												
ADAMTS19	171019	broad.mit.edu	37	5	128861990	128861990	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:128861990T>A	uc003kvb.1	+	4	909	c.909T>A	c.(907-909)CCT>CCA	p.P303P	ADAMTS19_uc003kvc.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	303					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		AAGGAAGACCTAGGTCTAGAA	0.343												
ADAMTS19	171019	broad.mit.edu	37	5	129015545	129015545	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:129015545T>G	uc003kvb.1	+	17	2577	c.2577T>G	c.(2575-2577)CAT>CAG	p.H859Q	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	859	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		CTACCGTTCATTATGTAAGAC	0.438												
RAD50	10111	broad.mit.edu	37	5	131953957	131953957	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:131953957T>G	uc003kxi.2	+	21	3747	c.3360T>G	c.(3358-3360)GAT>GAG	p.D1120E	RAD50_uc003kxh.2_Missense_Mutation_p.D981E	NM_005732	NP_005723	Q92878	RAD50_HUMAN	RAD50 homolog isoform 1	1120					DNA duplex unwinding|double-strand break repair via homologous recombination|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|telomere maintenance via telomerase	Mre11 complex|nuclear chromosome, telomeric region|nucleoplasm	ATP binding|DNA binding|nuclease activity|protein binding, bridging|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGAACAAGGATCTGGATATTT	0.328								Homologous_recombination				
KIF3A	11127	broad.mit.edu	37	5	132070038	132070038	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:132070038T>C	uc003kxo.2	-	2	293	c.139A>G	c.(139-141)ACT>GCT	p.T47A	KIF3A_uc003kxn.2_Missense_Mutation_p.T6A|KIF3A_uc011cxf.1_Missense_Mutation_p.T47A|KIF3A_uc003kxp.2_Missense_Mutation_p.T47A	NM_007054	NP_008985	Q9Y496	KIF3A_HUMAN	kinesin family member 3A	47	Kinesin-motor.				blood coagulation|organelle organization|plus-end-directed vesicle transport along microtubule	centrosome|cytosol|kinesin II complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|protein binding			pancreas(1)	1		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TTATGTACAGTGATAGTTCCC	0.398												
SHROOM1	134549	broad.mit.edu	37	5	132158969	132158969	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:132158969C>T	uc003kxx.2	-	9	3004	c.2199G>A	c.(2197-2199)GCG>GCA	p.A733A	SHROOM1_uc003kxy.1_Silent_p.A733A	NM_133456	NP_597713	Q2M3G4	SHRM1_HUMAN	shroom family member 1	733	ASD2.				actin filament bundle assembly|cell morphogenesis	cytoplasm|microtubule	actin filament binding			pancreas(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGTCTGAGGCCGCCCGGGCCA	0.682												
AFF4	27125	broad.mit.edu	37	5	132220768	132220768	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:132220768C>A	uc003kyd.2	-	19	3551	c.3143G>T	c.(3142-3144)AGC>ATC	p.S1048I	AFF4_uc011cxk.1_Missense_Mutation_p.S726I	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	1048					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TTTTACCTACCTTCCCAAGCC	0.299												
HSPA4	3308	broad.mit.edu	37	5	132424147	132424147	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:132424147G>A	uc003kyj.2	+	9	1318	c.1037G>A	c.(1036-1038)CGA>CAA	p.R346Q		NM_002154	NP_002145	P34932	HSP74_HUMAN	heat shock 70kDa protein 4	346					cellular chaperone-mediated protein complex assembly|protein import into mitochondrial outer membrane|response to unfolded protein	cytoplasm|nucleus	ATP binding			lung(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GGTGCTACACGAATCCCTGCG	0.348												
HSPA4	3308	broad.mit.edu	37	5	132428415	132428415	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:132428415A>G	uc003kyj.2	+	13	1865	c.1584A>G	c.(1582-1584)GAA>GAG	p.E528E		NM_002154	NP_002145	P34932	HSP74_HUMAN	heat shock 70kDa protein 4	528					cellular chaperone-mediated protein complex assembly|protein import into mitochondrial outer membrane|response to unfolded protein	cytoplasm|nucleus	ATP binding			lung(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ACCAGGAGGAACCACATGTTG	0.388												
FSTL4	23105	broad.mit.edu	37	5	132535212	132535212	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:132535212C>T	uc003kyn.1	-	16	2322	c.2104G>A	c.(2104-2106)GTC>ATC	p.V702I	FSTL4_uc003kym.1_Missense_Mutation_p.V351I	NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	702						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GCAGCACTGACTATGAAGCGC	0.592												
TCF7	6932	broad.mit.edu	37	5	133473800	133473800	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:133473800A>G	uc003kyt.2	+	4	688	c.492A>G	c.(490-492)GAA>GAG	p.E164E	TCF7_uc003kyu.1_Silent_p.E49E|TCF7_uc003kyv.2_Silent_p.E49E|TCF7_uc003kyw.2_Silent_p.E49E|TCF7_uc003kyx.2_5'UTR|TCF7_uc003kyy.2_Silent_p.E49E|TCF7_uc003kyz.2_Silent_p.E49E|TCF7_uc003kza.2_Silent_p.E49E	NM_003202	NP_003193	P36402	TCF7_HUMAN	transcription factor 7 (T-cell specific,	164					cellular response to interleukin-4|immune response|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription regulatory region DNA binding				0		Breast(839;0.058)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTCTCTACGAACATTTCAACA	0.587												
PPP2CA	5515	broad.mit.edu	37	5	133536726	133536726	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:133536726T>C	uc003kze.2	-	4	924	c.526A>G	c.(526-528)ACA>GCA	p.T176A		NM_002715	NP_002706	P67775	PP2AA_HUMAN	protein phosphatase 2, catalytic subunit, alpha	176					ceramide metabolic process|inactivation of MAPK activity|induction of apoptosis|meiosis|negative regulation of cell growth|negative regulation of epithelial to mesenchymal transition|negative regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of protein serine/threonine kinase activity|protein dephosphorylation|regulation of cell adhesion|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction|spindle pole	metal ion binding|phosphoprotein phosphatase activity			ovary(2)|lung(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Vitamin E(DB00163)	TGATCCAGTGTATCTATAGAT	0.353												
PPP2CA	5515	broad.mit.edu	37	5	133561534	133561534	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:133561534T>C	uc003kze.2	-	1	417	c.19A>G	c.(19-21)ACC>GCC	p.T7A	CDKL3_uc011cxm.1_Intron|CDKL3_uc011cxn.1_Intron	NM_002715	NP_002706	P67775	PP2AA_HUMAN	protein phosphatase 2, catalytic subunit, alpha	7					ceramide metabolic process|inactivation of MAPK activity|induction of apoptosis|meiosis|negative regulation of cell growth|negative regulation of epithelial to mesenchymal transition|negative regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of protein serine/threonine kinase activity|protein dephosphorylation|regulation of cell adhesion|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction|spindle pole	metal ion binding|phosphoprotein phosphatase activity			ovary(2)|lung(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Vitamin E(DB00163)	AGCTCCTTGGTGAACACCTTC	0.677												
SEC24A	10802	broad.mit.edu	37	5	133997278	133997278	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:133997278T>C	uc003kzs.2	+	2	853	c.565_splice	c.e2+2	p.G189_splice	SEC24A_uc011cxu.1_Splice_Site	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A						COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TAAAGTCAGGTAGTATTCTTA	0.303												
SEC24A	10802	broad.mit.edu	37	5	134044487	134044487	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:134044487G>A	uc003kzs.2	+	18	2924	c.2636G>A	c.(2635-2637)CGT>CAT	p.R879H	SEC24A_uc011cxu.1_Missense_Mutation_p.R643H	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	879					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCAGCTTACCGTTCTTCAGTC	0.468												
DDX46	9879	broad.mit.edu	37	5	134109545	134109545	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:134109545G>A	uc003kzw.2	+	5	775	c.607G>A	c.(607-609)GAT>AAT	p.D203N	DDX46_uc003kzv.1_RNA	NM_014829	NP_055644	Q7L014	DDX46_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	203	Poly-Asp.				mRNA processing|RNA splicing	Cajal body|nuclear speck	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TTTAGAGGACGATGATGGTAT	0.318												
KLHL3	26249	broad.mit.edu	37	5	137056206	137056206	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:137056206C>T	uc010jek.2	-	2	526	c.82G>A	c.(82-84)GTC>ATC	p.V28I	MYOT_uc011cye.1_Intron|KLHL3_uc010jem.1_Intron	NM_017415	NP_059111	Q9UH77	KLHL3_HUMAN	kelch-like 3	28						cytoplasm|cytoskeleton	actin binding|structural molecule activity				0		all_hematologic(541;3.67e-07)|Breast(839;7.61e-05)|Prostate(281;0.000825)|Ovarian(839;0.0481)|all_lung(232;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	GBM - Glioblastoma multiforme(465;0.0223)		GCAGGGTTGACAGTGATCGTC	0.502												
PKD2L2	27039	broad.mit.edu	37	5	137271556	137271556	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:137271556T>A	uc003lby.2	+	13	1798	c.1742T>A	c.(1741-1743)ATT>AAT	p.I581N	PKD2L2_uc003lbw.1_Missense_Mutation_p.I581N|PKD2L2_uc003lbx.2_Missense_Mutation_p.I480N|PKD2L2_uc011cyi.1_Missense_Mutation_p.I189N	NM_014386	NP_055201	Q9NZM6	PK2L2_HUMAN	polycystic kidney disease 2-like 2	581	Cytoplasmic (Potential).					integral to membrane	calcium ion binding|ion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TCTATGGAAATTCAAGATGAC	0.398												
NME5	8382	broad.mit.edu	37	5	137454576	137454576	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:137454576A>C	uc003lce.2	-	5	564	c.486T>G	c.(484-486)AAT>AAG	p.N162K	BRD8_uc003lcc.1_Intron	NM_003551	NP_003542	P56597	NDK5_HUMAN	non-metastatic cells 5, protein expressed in	162					anti-apoptosis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatid development|UTP biosynthetic process		ATP binding|nucleoside diphosphate kinase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TTATATGTAAATTTAAATAGT	0.328												
CDC23	8697	broad.mit.edu	37	5	137533902	137533902	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:137533902G>A	uc003lcl.2	-	9	1029	c.998C>T	c.(997-999)ACG>ATG	p.T333M		NM_004661	NP_004652	Q9UJX2	CDC23_HUMAN	cell division cycle protein 23	333	TPR 5.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G1 phase of mitotic cell cycle|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase plate congression|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of exit from mitosis	anaphase-promoting complex|cytosol|nucleoplasm	binding|ubiquitin-protein ligase activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TACACAGCACGTTTCTACACG	0.264												
KDM3B	51780	broad.mit.edu	37	5	137727078	137727078	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:137727078G>T	uc003lcy.1	+	8	1957	c.1757G>T	c.(1756-1758)GGC>GTC	p.G586V	KDM3B_uc010jew.1_Missense_Mutation_p.G242V|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	586					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						TCTAAGGCTGGCAGCTCTGTG	0.557												
CTNNA1	1495	broad.mit.edu	37	5	138269585	138269585	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:138269585A>G	uc003ldh.2	+	18	2623	c.2528A>G	c.(2527-2529)TAC>TGC	p.Y843C	CTNNA1_uc011cyx.1_Missense_Mutation_p.Y740C|CTNNA1_uc011cyy.1_Missense_Mutation_p.Y720C|CTNNA1_uc003ldi.2_Missense_Mutation_p.Y541C|CTNNA1_uc003ldj.2_3'UTR|CTNNA1_uc003ldl.2_Missense_Mutation_p.Y473C	NM_001903	NP_001894	P35221	CTNA1_HUMAN	catenin, alpha 1	843					adherens junction organization|apical junction assembly|cell adhesion|cellular response to indole-3-methanol|muscle cell differentiation|positive regulation of muscle cell differentiation	actin cytoskeleton|catenin complex|cytosol	beta-catenin binding|cadherin binding|gamma-catenin binding|structural molecule activity|vinculin binding			breast(6)|ovary(2)|large_intestine(2)|kidney(1)	11			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TCTACCAAATACCAAAAGTCA	0.507												
SLC23A1	9963	broad.mit.edu	37	5	138714371	138714371	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:138714371C>T	uc003leh.2	-	10	1173	c.1076G>A	c.(1075-1077)GGC>GAC	p.G359D	SLC23A1_uc003leg.2_Missense_Mutation_p.G363D	NM_005847	NP_005838	Q9UHI7	S23A1_HUMAN	solute carrier family 23 (nucleobase	359	Helical; (Potential).				brain development|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|response to toxin|transepithelial L-ascorbic acid transport|water-soluble vitamin metabolic process	apical plasma membrane|cytoplasm|integral to plasma membrane|intracellular organelle|membrane fraction	dehydroascorbic acid transporter activity|L-ascorbate:sodium symporter activity|nucleobase transmembrane transporter activity|protein binding|sodium-dependent L-ascorbate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)		Vitamin C(DB00126)	GGTGAAGATGCCCCTGTAAGG	0.607												
PSD2	84249	broad.mit.edu	37	5	139193808	139193808	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:139193808C>T	uc003leu.1	+	4	1080	c.875C>T	c.(874-876)TCG>TTG	p.S292L		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	292	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCAGCAGCTCGGAGGGGTTG	0.632												
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139884751	139884751	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:139884751T>C	uc003lfs.1	+	17	3319	c.3195T>C	c.(3193-3195)GGT>GGC	p.G1065G	ANKHD1_uc003lfq.1_Silent_p.G1084G|ANKHD1_uc003lfr.2_Silent_p.G1065G|ANKHD1_uc003lft.1_Silent_p.G276G|ANKHD1_uc003lfu.1_Silent_p.G545G|ANKHD1_uc003lfv.1_Silent_p.G142G	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1065						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTGTGCAGGTGGTCATGAAG	0.338												
SLC35A4	113829	broad.mit.edu	37	5	139947472	139947472	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:139947472G>A	uc003lgg.1	+	3	1446	c.718G>A	c.(718-720)GGC>AGC	p.G240S	SLC35A4_uc003lgh.1_Missense_Mutation_p.G240S	NM_080670	NP_542401	Q96G79	S35A4_HUMAN	solute carrier family 35, member A4	240	Leu-rich.					Golgi membrane|integral to membrane	sugar:hydrogen symporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCTGGCGGCGGCTCTGGCCC	0.572												
PCDHA4	56144	broad.mit.edu	37	5	140188651	140188651	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140188651T>C	uc003lhi.2	+	1	1980	c.1879T>C	c.(1879-1881)TAC>CAC	p.Y627H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.Y627H|PCDHA4_uc011daa.1_Missense_Mutation_p.Y627H	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	627	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGGGGCTGTACACTGGCGA	0.687												
PCDHA5	56143	broad.mit.edu	37	5	140203141	140203141	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140203141G>A	uc003lhl.2	+	1	1781	c.1781G>A	c.(1780-1782)CGC>CAC	p.R594H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.R594H|PCDHA5_uc003lhj.1_Missense_Mutation_p.R594H	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	594	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGAAGGTGCGCGCAGTGGAC	0.697												
PCDHA5	56143	broad.mit.edu	37	5	140203465	140203465	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140203465C>T	uc003lhl.2	+	1	2105	c.2105C>T	c.(2104-2106)GCC>GTC	p.A702V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.A702V|PCDHA5_uc003lhj.1_Missense_Mutation_p.A702V	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	702	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGATCATCGCCATCTGTGCG	0.692												
PCDHA7	56141	broad.mit.edu	37	5	140214272	140214272	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140214272T>C	uc003lhq.2	+	1	304	c.304T>C	c.(304-306)TGC>CGC	p.C102R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.C102R	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	102	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCGCGGAGTGCAGCATCCA	0.562												
PCDHA9	9752	broad.mit.edu	37	5	140229555	140229555	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140229555A>G	uc003lhu.2	+	1	2199	c.1475A>G	c.(1474-1476)TAC>TGC	p.Y492C	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.Y492C	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	492	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGGTGTCCTACTCGCTGGTG	0.662												
PCDHA9	9752	broad.mit.edu	37	5	140229744	140229744	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140229744T>C	uc003lhu.2	+	1	2388	c.1664T>C	c.(1663-1665)GTG>GCG	p.V555A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.V555A	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	555	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGGTGTTCGTGCTGGACGAG	0.692												
PCDHA9	9752	broad.mit.edu	37	5	140230117	140230117	+	Silent	SNP	G	G	A	rs140380568	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140230117G>A	uc003lhu.2	+	1	2761	c.2037G>A	c.(2035-2037)TCG>TCA	p.S679S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.S679S	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	679	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAAAGTCATCGTCGCGGGCGT	0.657												
PCDHA10	56139	broad.mit.edu	37	5	140236179	140236179	+	Silent	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140236179A>T	uc003lhx.2	+	1	546	c.546A>T	c.(544-546)ATA>ATT	p.I182I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Silent_p.I182I|PCDHA10_uc011dad.1_Silent_p.I182I	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	182	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGATATTATAAACAAAAAAG	0.408												
PCDHA11	56138	broad.mit.edu	37	5	140249416	140249416	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140249416A>T	uc003lia.2	+	1	1586	c.728A>T	c.(727-729)GAT>GTT	p.D243V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.D243V	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	243	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGAGTTTGATAAATCAGAA	0.458												
PCDHA11	56138	broad.mit.edu	37	5	140250295	140250295	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140250295C>T	uc003lia.2	+	1	2465	c.1607C>T	c.(1606-1608)GCG>GTG	p.A536V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.A536V	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	536	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGGTGAGCGCGCGCGATGCG	0.667												
PCDHA13	56136	broad.mit.edu	37	5	140263420	140263420	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140263420T>C	uc003lif.2	+	1	1567	c.1567T>C	c.(1567-1569)TTG>CTG	p.L523L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.L523L|PCDHA13_uc003lid.2_Silent_p.L523L	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	523	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTGCAGCCGTTGGACCACGA	0.682												
PCDHA13	56136	broad.mit.edu	37	5	140263984	140263984	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140263984T>C	uc003lif.2	+	1	2131	c.2131T>C	c.(2131-2133)TTG>CTG	p.L711L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.L711L|PCDHA13_uc003lid.2_Silent_p.L711L	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	711	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCCAGCCTGTTGGTGCTCAC	0.657												
PCDHAC1	56135	broad.mit.edu	37	5	140306707	140306707	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140306707T>C	uc003lih.2	+	1	406	c.230T>C	c.(229-231)GTC>GCC	p.V77A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.V77A	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	77	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATTTGGTGGTCAGAGAGCCG	0.627												
PCDHB5	26167	broad.mit.edu	37	5	140516540	140516540	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140516540C>T	uc003liq.2	+	1	1741	c.1524C>T	c.(1522-1524)GAC>GAT	p.D508D		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	508	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCAACGCGGACAACGGCCACC	0.677												
PCDHB7	56129	broad.mit.edu	37	5	140554005	140554005	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140554005G>A	uc003lit.2	+	1	1763	c.1589G>A	c.(1588-1590)CGC>CAC	p.R530H		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	530	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCGAGTTCCGCGTGGGCGCC	0.692												
PCDHB16	57717	broad.mit.edu	37	5	140562720	140562720	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140562720T>C	uc003liv.2	+	1	1741	c.586T>C	c.(586-588)TTG>CTG	p.L196L	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	196	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGAGCTAGTGTTGGATAAAGA	0.488												
PCDHB9	56127	broad.mit.edu	37	5	140568285	140568285	+	Missense_Mutation	SNP	G	G	A	rs17844522		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140568285G>A	uc003liw.1	+	3	1394	c.1394G>A	c.(1393-1395)AGC>AAC	p.S465N		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	465	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGAACAACAGCCCCGCCCTG	0.627												
PCDHB9	56127	broad.mit.edu	37	5	140568579	140568579	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140568579A>G	uc003liw.1	+	3	1688	c.1688A>G	c.(1687-1689)TAC>TGC	p.Y563C		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	563	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCGTGCTGTACCCGCTGCAG	0.726												
PCDHB10	56126	broad.mit.edu	37	5	140573462	140573462	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140573462A>C	uc003lix.2	+	1	1511	c.1337A>C	c.(1336-1338)GAC>GCC	p.D446A		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	446	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GACGTCAATGACAACGCCCCC	0.587												
PCDHB12	56124	broad.mit.edu	37	5	140590145	140590145	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140590145G>A	uc003liz.2	+	1	1855	c.1666G>A	c.(1666-1668)GAC>AAC	p.D556N	PCDHB12_uc011dak.1_Missense_Mutation_p.D219N	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	556	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGACGCCAACGACAACTCGCC	0.711												
PCDHB12	56124	broad.mit.edu	37	5	140590290	140590290	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140590290A>G	uc003liz.2	+	1	2000	c.1811A>G	c.(1810-1812)TAC>TGC	p.Y604C	PCDHB12_uc011dak.1_Missense_Mutation_p.Y267C	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	604	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGCTGTCGTACCAGCTGCTC	0.716												
PCDHGA4	56111	broad.mit.edu	37	5	140735157	140735157	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140735157A>G	uc003ljq.1	+	1	390	c.390A>G	c.(388-390)CCA>CCG	p.P130P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Silent_p.P130P	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	130	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGATAACCCACCCAGTTTTG	0.418												
PCDHGB3	56102	broad.mit.edu	37	5	140751421	140751421	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140751421T>C	uc003ljw.1	+	1	1460	c.1460T>C	c.(1459-1461)GTC>GCC	p.V487A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Missense_Mutation_p.V487A|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	487	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATGGCCTTGTCTCCTACTAC	0.632												
PCDHGA8	9708	broad.mit.edu	37	5	140772702	140772702	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140772702A>G	uc003lkd.1	+	1	1220	c.322A>G	c.(322-324)ACC>GCC	p.T108A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.T108A	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	108	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAATATTAACACCCTGGTTGA	0.463												
PCDHGA9	56107	broad.mit.edu	37	5	140782733	140782733	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140782733A>G	uc003lkh.1	+	1	214	c.214A>G	c.(214-216)ACG>GCG	p.T72A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Missense_Mutation_p.T72A	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	72	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGAGGTAGGACGCAGCTTTT	0.622												
PCDHGA9	56107	broad.mit.edu	37	5	140782869	140782869	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140782869A>G	uc003lkh.1	+	1	350	c.350A>G	c.(349-351)TAC>TGC	p.Y117C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Missense_Mutation_p.Y117C	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	117	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGAAACTGTACGGAATAGAA	0.493												
PCDHGA10	56106	broad.mit.edu	37	5	140794829	140794829	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140794829A>G	uc003lkl.1	+	1	2087	c.2087A>G	c.(2086-2088)TAC>TGC	p.Y696C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.Y696C|PCDHGB7_uc003lkm.2_5'Flank|PCDHGB7_uc003lkn.1_5'Flank	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	696	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCACTCTGTACCTGGTGGTA	0.652												
PCDHGB7	56099	broad.mit.edu	37	5	140797840	140797840	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140797840A>G	uc003lkn.1	+	1	559	c.414A>G	c.(412-414)ATA>ATG	p.I138M	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkm.2_Missense_Mutation_p.I138M|PCDHGA11_uc003lko.1_5'Flank|PCDHGA11_uc003lkp.1_5'Flank|PCDHGA11_uc003lkq.1_5'Flank	NM_018927	NP_061750	Q9Y5F8	PCDGJ_HUMAN	protocadherin gamma subfamily B, 7 isoform 1	138	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGATGAAATAAACTTAGAAA	0.398												
PCDHGA11	56105	broad.mit.edu	37	5	140801979	140801979	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140801979A>G	uc003lkq.1	+	1	1443	c.1185A>G	c.(1183-1185)TTA>TTG	p.L395L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Silent_p.L395L|PCDHGA11_uc003lkp.1_Silent_p.L395L	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	395	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTTTAAATTAGAAAAGACTT	0.403												
PCDHGA12	26025	broad.mit.edu	37	5	140812322	140812322	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140812322G>A	uc003lkt.1	+	1	2165	c.1996G>A	c.(1996-1998)GAC>AAC	p.D666N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Missense_Mutation_p.D666N	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	666	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCCGTGGCCGACAGCATCCC	0.662												
PCDHGC4	56098	broad.mit.edu	37	5	140865090	140865090	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140865090A>G	uc003lky.1	+	1	350	c.350A>G	c.(349-351)TAC>TGC	p.Y117C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.Y117C	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	117	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGGAAATGTACCGAGCAGAG	0.572												
DIAPH1	1729	broad.mit.edu	37	5	140958698	140958698	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140958698G>A	uc003llb.3	-	9	1031	c.890C>T	c.(889-891)CCG>CTG	p.P297L	DIAPH1_uc003llc.3_Missense_Mutation_p.P288L	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	297	GBD/FH3.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCCAGCAGCGGCTGGAAACG	0.453												
PCDH1	5097	broad.mit.edu	37	5	141243673	141243673	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:141243673G>A	uc003llq.2	-	3	2340	c.2223C>T	c.(2221-2223)GCC>GCT	p.A741A	PCDH1_uc003llp.2_Silent_p.A741A|PCDH1_uc011dbf.1_Silent_p.A719A	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	741	Extracellular (Potential).|Cadherin 7.				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		CAAAGTCCTCGGCTGCCACCT	0.537												
PCDH1	5097	broad.mit.edu	37	5	141248257	141248257	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:141248257G>A	uc003llq.2	-	2	897	c.780C>T	c.(778-780)CGC>CGT	p.R260R	PCDH1_uc003llp.2_Silent_p.R260R|PCDH1_uc011dbf.1_Silent_p.R238R	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	260	Extracellular (Potential).|Cadherin 2.				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		CACTGCTGGCGCGTGGGGGGC	0.602												
YIPF5	81555	broad.mit.edu	37	5	143540084	143540084	+	Silent	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:143540084T>G	uc003lnk.3	-	6	1092	c.651A>C	c.(649-651)GGA>GGC	p.G217G	YIPF5_uc003lnl.3_Silent_p.G217G|YIPF5_uc010jgl.2_Silent_p.G163G	NM_001024947	NP_001020118	Q969M3	YIPF5_HUMAN	Yip1 domain family, member 5	217	Helical; (Potential).				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle|Golgi cisterna membrane|integral to membrane				ovary(1)|skin(1)	2		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			AACTACACCATCCAATAATCC	0.373												
KCTD16	57528	broad.mit.edu	37	5	143587110	143587110	+	Splice_Site	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:143587110G>A	uc003lnm.1	+	3	1461	c.832_splice	c.e3+1	p.R278_splice	KCTD16_uc003lnn.1_Splice_Site_p.R278_splice	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain							cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			GTCTTCTACCGTAAGTACAAA	0.393												
LARS	51520	broad.mit.edu	37	5	145493676	145493676	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:145493676A>G	uc003lnx.1	-	32	3762	c.3524T>C	c.(3523-3525)GTT>GCT	p.V1175A	LARS_uc003lnw.1_Missense_Mutation_p.V333A|LARS_uc011dbq.1_Missense_Mutation_p.V1129A|LARS_uc011dbr.1_Missense_Mutation_p.V1121A|LARS_uc011dbs.1_Missense_Mutation_p.V1148A	NM_020117	NP_064502	Q9P2J5	SYLC_HUMAN	leucyl-tRNA synthetase	1175					leucyl-tRNA aminoacylation	cytosol	ATP binding|leucine-tRNA ligase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Leucine(DB00149)	AGTTTAATGAACCAGATAGAT	0.403												
GPR151	134391	broad.mit.edu	37	5	145895104	145895104	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:145895104T>C	uc003lod.1	-	1	573	c.573A>G	c.(571-573)GTA>GTG	p.V191V		NM_194251	NP_919227	Q8TDV0	GP151_HUMAN	G protein-coupled receptor 151	191	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCACAGCTGGTACATCCACGA	0.493												
DPYSL3	1809	broad.mit.edu	37	5	146792252	146792252	+	Splice_Site	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:146792252C>T	uc003lon.1	-	6	651	c.541_splice	c.e6-1	p.L181_splice	DPYSL3_uc003loo.2_Splice_Site_p.L295_splice	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3						axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTCATAGAGCTGAAATAGAA	0.498												
JAKMIP2	9832	broad.mit.edu	37	5	147019216	147019216	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:147019216G>A	uc003loq.1	-	10	1891	c.1509C>T	c.(1507-1509)ATC>ATT	p.I503I	JAKMIP2_uc011dbx.1_Silent_p.I461I|JAKMIP2_uc003lor.1_Silent_p.I503I|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Silent_p.I503I	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	503	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTCAGCGTCGATGATGCCTC	0.453												
HTR4	3360	broad.mit.edu	37	5	147902878	147902878	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:147902878A>G	uc003lpn.2	-	5	549	c.385T>C	c.(385-387)TAT>CAT	p.Y129H	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_Missense_Mutation_p.Y129H|HTR4_uc003lpj.1_Missense_Mutation_p.Y129H|HTR4_uc003lpk.2_Missense_Mutation_p.Y129H|HTR4_uc011dby.1_Missense_Mutation_p.Y129H|HTR4_uc003lpl.2_Missense_Mutation_p.Y129H|HTR4_uc003lpm.2_Missense_Mutation_p.Y129H|HTR4_uc010jgv.2_RNA|HTR4_uc003lpo.1_Missense_Mutation_p.Y129H	NM_000870	NP_000861	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform b	129	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	TTGTTCCTATAGACCAAAGGC	0.502												
SH3TC2	79628	broad.mit.edu	37	5	148388499	148388499	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:148388499C>T	uc003lpu.2	-	15	3545	c.3393G>A	c.(3391-3393)AAG>AAA	p.K1131K	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_Silent_p.K775K|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_Silent_p.K678K|SH3TC2_uc010jgx.2_Silent_p.K1124K	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	1131	TPR 6.						binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTCTGTCAGCTTATTGAAAA	0.532												
SH3TC2	79628	broad.mit.edu	37	5	148388548	148388548	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:148388548A>G	uc003lpu.2	-	15	3496	c.3344T>C	c.(3343-3345)TTA>TCA	p.L1115S	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_Missense_Mutation_p.L759S|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_Missense_Mutation_p.L662S|SH3TC2_uc010jgx.2_Missense_Mutation_p.L1108S	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	1115	TPR 5.						binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTCCTTGCTAAAGGAACAGC	0.478												
SH3TC2	79628	broad.mit.edu	37	5	148431762	148431762	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:148431762A>G	uc003lpu.2	-	2	246	c.94T>C	c.(94-96)TGT>CGT	p.C32R	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc003lpt.2_5'UTR|SH3TC2_uc010jgx.2_Missense_Mutation_p.C32R|SH3TC2_uc003lpv.1_5'UTR|SH3TC2_uc011dbz.1_5'UTR|SH3TC2_uc003lpw.1_Missense_Mutation_p.C32R	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	32							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGGCTATACACTCACTCGAT	0.383												
ABLIM3	22885	broad.mit.edu	37	5	148617149	148617149	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:148617149A>G	uc003lpy.2	+	11	1278	c.1027A>G	c.(1027-1029)AGA>GGA	p.R343G	ABLIM3_uc003lpz.1_Missense_Mutation_p.R343G|ABLIM3_uc003lqa.1_Intron|ABLIM3_uc003lqb.2_Intron|ABLIM3_uc003lqc.1_Missense_Mutation_p.R343G|ABLIM3_uc003lqd.1_Intron|ABLIM3_uc003lqf.2_Intron|ABLIM3_uc003lqe.1_Intron	NM_014945	NP_055760	O94929	ABLM3_HUMAN	actin binding LIM protein family, member 3	343					axon guidance|cytoskeleton organization	cytoplasm	actin binding|zinc ion binding			ovary(2)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATGCTGGAGAGATGTGGCTA	0.542												
ARHGEF37	389337	broad.mit.edu	37	5	149003693	149003693	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:149003693C>T	uc003lra.1	+	10	1518	c.1454C>T	c.(1453-1455)CCC>CTC	p.P485L		NM_001001669	NP_001001669	A1IGU5	ARH37_HUMAN	hypothetical protein LOC389337	485					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0						CAGCCACCTCCCACCACACAA	0.557												
ARSI	340075	broad.mit.edu	37	5	149677489	149677489	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:149677489A>G	uc003lrv.2	-	2	1587	c.998T>C	c.(997-999)CTG>CCG	p.L333P		NM_001012301	NP_001012301	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I precursor	333						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCGCTTGAGCAGGGGACTGTG	0.632												
TNIP1	10318	broad.mit.edu	37	5	150410293	150410293	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:150410293T>C	uc003ltf.2	-	18	2481	c.1892A>G	c.(1891-1893)GAC>GGC	p.D631G	TNIP1_uc011dcn.1_Missense_Mutation_p.D149G|TNIP1_uc010jhl.2_RNA|TNIP1_uc010jhm.2_Missense_Mutation_p.D567G|TNIP1_uc010jhn.2_Missense_Mutation_p.T535A|TNIP1_uc011dco.1_3'UTR|TNIP1_uc003lth.2_RNA|TNIP1_uc003lti.2_Missense_Mutation_p.D631G|TNIP1_uc003ltg.2_Missense_Mutation_p.D578G|TNIP1_uc003ltj.2_Missense_Mutation_p.D631G|TNIP1_uc010jho.1_Intron|TNIP1_uc010jhq.1_Intron|TNIP1_uc010jhp.1_Intron|TNIP1_uc010jhr.1_Intron|TNIP1_uc003ltk.2_Intron	NM_006058	NP_006049	Q15025	TNIP1_HUMAN	TNFAIP3 interacting protein 1	631	Pro-rich.				defense response|glycoprotein biosynthetic process|negative regulation of viral genome replication|translation	cytoplasm|nucleus	protein binding			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.0911)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCCCTCACGGTCATTTTTTGG	0.438												
ANXA6	309	broad.mit.edu	37	5	150484828	150484828	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:150484828T>C	uc003ltl.1	-	24	1969	c.1817A>G	c.(1816-1818)GAC>GGC	p.D606G	ANXA6_uc011dcp.1_Missense_Mutation_p.D574G|ANXA6_uc003ltm.1_Missense_Mutation_p.D600G|ANXA6_uc003ltn.1_Missense_Mutation_p.D393G|ANXA6_uc003lto.1_Missense_Mutation_p.D193G	NM_001155	NP_001146	P08133	ANXA6_HUMAN	annexin VI isoform 1	606						melanosome	calcium ion binding|calcium-dependent phospholipid binding|protein binding				0		Medulloblastoma(196;0.0912)|all_hematologic(541;0.208)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTAAAGTTTGTCGGCAAAGAA	0.478												
FAT2	2196	broad.mit.edu	37	5	150900933	150900933	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:150900933C>G	uc003lue.3	-	18	11234	c.11221G>C	c.(11221-11223)GTG>CTG	p.V3741L	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.V434L	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3741	Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCCAGATGCACTGTGTTATGG	0.607												
SPARC	6678	broad.mit.edu	37	5	151052748	151052748	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:151052748C>T	uc003luh.2	-	3	174	c.150G>A	c.(148-150)GTG>GTA	p.V50V	GM2A_uc011dcs.1_Intron|SPARC_uc003lug.2_5'UTR|SPARC_uc003lui.2_Silent_p.V50V	NM_003118	NP_003109	P09486	SPRC_HUMAN	secreted protein, acidic, cysteine-rich	50	Asp/Glu-rich (acidic; binds calcium).				ossification|platelet activation|platelet degranulation|signal transduction	basement membrane|extracellular space|platelet alpha granule lumen	calcium ion binding|collagen binding			central_nervous_system(1)	1		Medulloblastoma(196;0.109)|all_hematologic(541;0.122)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)	OV - Ovarian serous cystadenocarcinoma(192;0.00118)	Becaplermin(DB00102)	CTCCTACTTCCACCTGGACAG	0.527												
G3BP1	10146	broad.mit.edu	37	5	151170481	151170481	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:151170481T>C	uc003lun.2	+	4	380	c.209T>C	c.(208-210)TTC>TCC	p.F70S	G3BP1_uc010jhy.1_Missense_Mutation_p.F70S|G3BP1_uc003lum.2_Missense_Mutation_p.F70S|G3BP1_uc011dcu.1_5'UTR|G3BP1_uc010jhz.2_5'UTR	NM_005754	NP_005745	Q13283	G3BP1_HUMAN	Ras-GTPase-activating protein SH3-domain-binding	70	NTF2.				Ras protein signal transduction|transport	cytosol|nucleus|plasma membrane	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|endonuclease activity|protein binding|RNA binding			skin(3)|ovary(1)	4		all_hematologic(541;0.0338)|Medulloblastoma(196;0.091)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)			TCACAAAACTTCACCAACTGC	0.378												
FAM114A2	10827	broad.mit.edu	37	5	153381868	153381868	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:153381868A>G	uc003lvb.2	-	11	1787	c.1199T>C	c.(1198-1200)GTT>GCT	p.V400A	FAM114A2_uc003lvc.2_Missense_Mutation_p.V400A|FAM114A2_uc003lvd.2_Missense_Mutation_p.V400A|FAM114A2_uc003lve.2_Missense_Mutation_p.V216A|FAM114A2_uc011dda.1_Missense_Mutation_p.V330A	NM_018691	NP_061161	Q9NRY5	F1142_HUMAN	hypothetical protein LOC10827	400							purine nucleotide binding				0						GCCATGCAGAACCAATGCAGC	0.443												
GALNT10	55568	broad.mit.edu	37	5	153792536	153792536	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:153792536C>T	uc003lvh.2	+	10	1606	c.1474C>T	c.(1474-1476)CGT>TGT	p.R492C	GALNT10_uc010jic.2_RNA|GALNT10_uc010jid.2_Missense_Mutation_p.R333C|uc003lvi.2_Intron|GALNT10_uc003lvj.2_Missense_Mutation_p.R163C	NM_198321	NP_938080	Q86SR1	GLT10_HUMAN	GalNAc transferase 10 isoform a	492	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)|all_hematologic(541;0.21)	Kidney(363;8.21e-05)|KIRC - Kidney renal clear cell carcinoma(527;0.000577)			CGTCCGAGGCCGTGGGGAGGC	0.627												
LARP1	23367	broad.mit.edu	37	5	154173252	154173252	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:154173252A>G	uc003lvp.2	+	5	1266	c.837A>G	c.(835-837)AGA>AGG	p.R279R	LARP1_uc003lvo.2_Silent_p.R202R|LARP1_uc010jie.1_Silent_p.R74R	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	279							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CGGAGCCTAGACACATACCTG	0.552												
GEMIN5	25929	broad.mit.edu	37	5	154284949	154284949	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:154284949T>C	uc003lvx.3	-	17	2566	c.2483A>G	c.(2482-2484)AAA>AGA	p.K828R	GEMIN5_uc011ddk.1_Missense_Mutation_p.K827R	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	828					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TGGCTCCTTTTTCAGTAAAAT	0.353												
KIF4B	285643	broad.mit.edu	37	5	154394631	154394631	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:154394631T>C	uc010jih.1	+	1	1372	c.1212T>C	c.(1210-1212)CGT>CGC	p.R404R		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	404	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AATTAAGTCGTTGTCTGAGCA	0.453												
KIF4B	285643	broad.mit.edu	37	5	154396976	154396976	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:154396976C>T	uc010jih.1	+	1	3717	c.3557C>T	c.(3556-3558)GCT>GTT	p.A1186V		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	1186	Interaction with PRC1 (By similarity).|Globular (By similarity).				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ACTGCTCCAGCTCCCTCCCCT	0.493												
C5orf40	408263	broad.mit.edu	37	5	156769912	156769912	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:156769912C>A	uc003lwu.2	-	2	821	c.633G>T	c.(631-633)GGG>GGT	p.G211G	CYFIP2_uc003lwq.2_Intron|CYFIP2_uc011ddn.1_Intron|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Intron|CYFIP2_uc003lws.2_Intron|CYFIP2_uc003lwt.2_Intron|CYFIP2_uc011ddp.1_Intron	NM_001001343	NP_001001343	Q8TBE3	FNDC9_HUMAN	hypothetical protein LOC408263	211						integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGTCACCACCCCCCCTCTGTA	0.587											OREG0016977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
SOX30	11063	broad.mit.edu	37	5	157053373	157053373	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:157053373T>A	uc003lxb.1	-	5	2579	c.2237A>T	c.(2236-2238)GAA>GTA	p.E746V	SOX30_uc003lxc.1_3'UTR|SOX30_uc011dds.1_Missense_Mutation_p.E441V	NM_178424	NP_848511	O94993	SOX30_HUMAN	SRY (sex determining region Y)-box 30 isoform a	746					regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|response to corticosteroid stimulus|transcription, DNA-dependent	nucleus|nucleus	sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)|central_nervous_system(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CACTTTTTCTTCTTCCTCCTC	0.378												
EBF1	1879	broad.mit.edu	37	5	158135143	158135143	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:158135143G>T	uc010jip.2	-	15	1890	c.1588C>A	c.(1588-1590)CTC>ATC	p.L530I	EBF1_uc011ddw.1_Missense_Mutation_p.L398I|EBF1_uc011ddx.1_Missense_Mutation_p.L531I|EBF1_uc003lxl.3_Missense_Mutation_p.L499I	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	530	Pro/Ser/Thr-rich.				multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTGGAGGGGAGGCTTGTGGAG	0.557			T	HMGA2	lipoma							
FABP6	2172	broad.mit.edu	37	5	159659203	159659203	+	Missense_Mutation	SNP	G	G	A	rs140576066		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:159659203G>A	uc003lya.1	+	2	294	c.166G>A	c.(166-168)GGG>AGG	p.G56R	FABP6_uc003lxx.1_Missense_Mutation_p.G105R|FABP6_uc003lxz.1_Missense_Mutation_p.G105R	NM_001445	NP_001436	P51161	FABP6_HUMAN	gastrotropin isoform 2	56					bile acid and bile salt transport|bile acid metabolic process|negative regulation of cell proliferation	cytosol	transporter activity				0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCACTACTCCGGGGGCCACAC	0.562												
SLU7	10569	broad.mit.edu	37	5	159835377	159835377	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:159835377T>C	uc003lyg.2	-	8	933	c.778A>G	c.(778-780)ATT>GTT	p.I260V		NM_006425	NP_006416	O95391	SLU7_HUMAN	step II splicing factor SLU7	260					alternative nuclear mRNA splicing, via spliceosome|nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|cytoplasm|nuclear speck|small nuclear ribonucleoprotein complex	pre-mRNA 3'-splice site binding|second spliceosomal transesterification activity|zinc ion binding			ovary(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CGGACAGTAATTCGTCTCTTG	0.348												
GABRA6	2559	broad.mit.edu	37	5	161113279	161113279	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:161113279T>C	uc003lyu.2	+	2	420	c.82T>C	c.(82-84)TAC>CAC	p.Y28H		NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	28	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AGGCAACTTCTACTCAGAAAA	0.483										TCGA Ovarian(5;0.080)		
GABRA1	2554	broad.mit.edu	37	5	161318037	161318037	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:161318037A>G	uc010jiw.2	+	9	1305	c.837A>G	c.(835-837)GTA>GTG	p.V279V	GABRA1_uc010jix.2_Silent_p.V279V|GABRA1_uc010jiy.2_Silent_p.V279V|GABRA1_uc003lyx.3_Silent_p.V279V|GABRA1_uc010jiz.2_Silent_p.V279V|GABRA1_uc010jja.2_Silent_p.V279V|GABRA1_uc010jjb.2_Silent_p.V279V	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	279	Helical; (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	GAGAGTCTGTACCAGCAAGAA	0.408												
NUDCD2	134492	broad.mit.edu	37	5	162886992	162886992	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:162886992T>C	uc003lze.2	-	1	152	c.65A>G	c.(64-66)TAC>TGC	p.Y22C	HMMR_uc003lzh.2_5'Flank|HMMR_uc003lzf.2_5'Flank|HMMR_uc003lzg.2_5'Flank|HMMR_uc011dem.1_5'Flank	NM_145266	NP_660309	Q8WVJ2	NUDC2_HUMAN	NudC domain containing 2	22	CS.					intracellular					0	Renal(175;0.000281)	Medulloblastoma(196;0.0207)|all_neural(177;0.0966)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0981)|OV - Ovarian serous cystadenocarcinoma(192;0.183)|Epithelial(171;0.247)		CAAGGTCTGGTACCACTGGCC	0.687												
ODZ2	57451	broad.mit.edu	37	5	167645692	167645692	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:167645692A>G	uc010jjd.2	+	23	4769	c.4769A>G	c.(4768-4770)GAT>GGT	p.D1590G	ODZ2_uc003lzr.3_Missense_Mutation_p.D1360G|ODZ2_uc003lzt.3_Missense_Mutation_p.D963G|ODZ2_uc010jje.2_Missense_Mutation_p.D854G	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TTCAACGCTGATGGCATCCAC	0.458												
WWC1	23286	broad.mit.edu	37	5	167850759	167850759	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:167850759C>T	uc003lzu.2	+	11	1589	c.1496C>T	c.(1495-1497)ACC>ATC	p.T499I	WWC1_uc003lzv.2_Missense_Mutation_p.T499I|WWC1_uc011den.1_Missense_Mutation_p.T499I|WWC1_uc003lzw.2_Missense_Mutation_p.T298I	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	499					cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		GGCTGCATCACCACCATCCAC	0.632												
SLIT3	6586	broad.mit.edu	37	5	168098380	168098380	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:168098380T>C	uc003mab.2	-	34	4370	c.3950A>G	c.(3949-3951)GAC>GGC	p.D1317G	SLIT3_uc010jjg.2_Missense_Mutation_p.D1324G	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1317	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGCCTTGAAGTCCTGCAGCTC	0.657												
SLIT3	6586	broad.mit.edu	37	5	168176497	168176497	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:168176497A>C	uc003mab.2	-	19	2537	c.2117T>G	c.(2116-2118)ATC>AGC	p.I706S	SLIT3_uc010jjg.2_Missense_Mutation_p.I706S	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	706	LRRCT 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAAGTCCTGGATGGCCACATC	0.552												
DOCK2	1794	broad.mit.edu	37	5	169145773	169145773	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:169145773C>T	uc003maf.2	+	22	2325	c.2245C>T	c.(2245-2247)CGG>TGG	p.R749W	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.R241W	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	749					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTTCATTGTTCGGTCGAGGAC	0.418												
DOCK2	1794	broad.mit.edu	37	5	169454930	169454930	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:169454930T>C	uc003maf.2	+	34	3525	c.3445T>C	c.(3445-3447)TAC>CAC	p.Y1149H	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.Y641H	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1149	DHR-2.|Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CGACGAGCAGTACATGCAGCT	0.522												
FBXW11	23291	broad.mit.edu	37	5	171318497	171318497	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:171318497T>C	uc003mbm.1	-	6	1134	c.763A>G	c.(763-765)AGT>GGT	p.S255G	FBXW11_uc011dey.1_Missense_Mutation_p.S223G|FBXW11_uc003mbl.1_Missense_Mutation_p.S242G|FBXW11_uc003mbn.1_Missense_Mutation_p.S221G	NM_012300	NP_036432	Q9UKB1	FBW1B_HUMAN	F-box and WD repeat domain containing 11 isoform	255	WD 1.				cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of circadian rhythm|positive regulation of proteolysis|positive regulation of transcription, DNA-dependent|protein dephosphorylation|protein destabilization|protein polyubiquitination|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	centrosome|cytosol|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity	p.N260_I262(1)		ovary(1)|breast(1)	2	Renal(175;0.000159)|Lung NSC(126;0.00384)|all_lung(126;0.00659)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CGTAGGCCACTGATAATTTTT	0.368												
UBTD2	92181	broad.mit.edu	37	5	171638962	171638962	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:171638962G>A	uc003mbp.1	-	3	703	c.577C>T	c.(577-579)CGG>TGG	p.R193W		NM_152277	NP_689490	Q8WUN7	UBTD2_HUMAN	dendritic cell-derived ubiquitin-like protein	193	Ubiquitin-like.					cytoplasm					0	Renal(175;0.000159)|Lung NSC(126;0.00976)|all_lung(126;0.0156)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AAAAACCACCGCTGACTACCT	0.488												
SH3PXD2B	285590	broad.mit.edu	37	5	171766816	171766816	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:171766816C>T	uc003mbr.2	-	13	1464	c.1293G>A	c.(1291-1293)GCG>GCA	p.A431A		NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	431					adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TGGGTCTCGACGCGTTGCTCG	0.587												
DUSP1	1843	broad.mit.edu	37	5	172195808	172195808	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:172195808A>G	uc003mbv.1	-	4	1309	c.1061T>C	c.(1060-1062)CTG>CCG	p.L354P	DUSP1_uc011dez.1_Missense_Mutation_p.L212P|DUSP1_uc003mbu.1_Missense_Mutation_p.L242P	NM_004417	NP_004408	P28562	DUS1_HUMAN	dual specificity phosphatase 1	354	Tyrosine-protein phosphatase.				cell cycle|endoderm formation|inactivation of MAPK activity	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|non-membrane spanning protein tyrosine phosphatase activity|protein binding			breast(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00431)|all_lung(126;0.00729)	all_hematologic(541;4.11e-18)|Breast(839;0.00637)|Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|Ovarian(839;0.15)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)	GBM - Glioblastoma multiforme(465;0.0103)		AAGGTAGCTCAGCGCACTGTT	0.617												
RPL26L1	51121	broad.mit.edu	37	5	172386967	172386967	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:172386967T>C	uc003mcc.2	+	2	133	c.91T>C	c.(91-93)TCA>CCA	p.S31P	LOC100268168_uc011dfb.1_5'Flank|LOC100268168_uc011dfc.1_5'Flank	NM_016093	NP_057177	Q9UNX3	RL26L_HUMAN	ribosomal protein L26-like 1	31					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|large ribosomal subunit	structural constituent of ribosome				0	Renal(175;0.000159)|Lung NSC(126;0.00344)|all_lung(126;0.00594)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GAAGATCATGTCATCCCCGCT	0.577												
BNIP1	662	broad.mit.edu	37	5	172590823	172590823	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:172590823C>T	uc003mcj.3	+	6	690	c.586C>T	c.(586-588)CGC>TGC	p.R196C	BNIP1_uc003mci.3_Missense_Mutation_p.R239C|BNIP1_uc003mck.3_Missense_Mutation_p.R205C|BNIP1_uc003mcl.3_Missense_Mutation_p.R162C	NM_001205	NP_001196	Q12981	SEC20_HUMAN	BCL2/adenovirus E1B 19kD interacting protein 1	196	Cytoplasmic (Potential).				anti-apoptosis|apoptosis|endoplasmic reticulum membrane fusion|endoplasmic reticulum organization|induction of apoptosis|vesicle-mediated transport	integral to endoplasmic reticulum membrane|nuclear envelope|SNARE complex	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			AAAATACAATCGCCGGGAGCT	0.478												
C5orf25	375484	broad.mit.edu	37	5	175772238	175772238	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:175772238T>C	uc003mds.3	+	12	2816	c.2409T>C	c.(2407-2409)ATT>ATC	p.I803I	C5orf25_uc003mdt.3_Silent_p.I388I|C5orf25_uc003mdr.3_RNA|C5orf25_uc003mdv.2_Silent_p.I264I			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	803											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		TCAAAAGGATTAAGCCCAAAC	0.488												
CDHR2	54825	broad.mit.edu	37	5	176004743	176004743	+	Missense_Mutation	SNP	G	G	A	rs115283964	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:176004743G>A	uc003mem.1	+	14	1522	c.1456G>A	c.(1456-1458)GTC>ATC	p.V486I	CDHR2_uc003men.1_Missense_Mutation_p.V486I	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	486	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GAGCTTGTACGTCCTCACGGT	0.607												
CDHR2	54825	broad.mit.edu	37	5	176005416	176005416	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:176005416A>G	uc003mem.1	+	16	1691	c.1625A>G	c.(1624-1626)AAC>AGC	p.N542S	CDHR2_uc003men.1_Missense_Mutation_p.N542S	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	542	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						ACGGTGAGGAACGGTGAGCTG	0.522												
CDHR2	54825	broad.mit.edu	37	5	176011443	176011443	+	Missense_Mutation	SNP	G	G	A	rs116786975	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:176011443G>A	uc003mem.1	+	19	2227	c.2161G>A	c.(2161-2163)GCG>ACG	p.A721T	CDHR2_uc003men.1_Missense_Mutation_p.A721T	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	721	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GGCCTGGGACGCGGACCAGAC	0.642												
CDHR2	54825	broad.mit.edu	37	5	176016062	176016062	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:176016062G>A	uc003mem.1	+	22	2953	c.2887G>A	c.(2887-2889)GTC>ATC	p.V963I	CDHR2_uc003men.1_Missense_Mutation_p.V963I	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	963	Extracellular (Potential).|Cadherin 9.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GAACAATGGCGTCATCCTGTT	0.587												
CDHR2	54825	broad.mit.edu	37	5	176017111	176017111	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:176017111A>G	uc003mem.1	+	25	3305	c.3239A>G	c.(3238-3240)TAC>TGC	p.Y1080C	CDHR2_uc003men.1_Missense_Mutation_p.Y1080C	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	1080	Extracellular (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						ACTACAGTATACATTGTGGAC	0.607												
UNC5A	90249	broad.mit.edu	37	5	176304606	176304606	+	Missense_Mutation	SNP	A	A	G	rs143892682		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:176304606A>G	uc003mey.2	+	10	1729	c.1537A>G	c.(1537-1539)ACC>GCC	p.T513A		NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	513	ZU5.|Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CGTCCTGCTCACCCGGCCAGT	0.637												
F12	2161	broad.mit.edu	37	5	176830304	176830304	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:176830304G>T	uc003mgo.3	-	12	1531	c.1482C>A	c.(1480-1482)CCC>CCA	p.P494P	PFN3_uc003mgl.2_5'Flank|F12_uc011dfy.1_Missense_Mutation_p.P25H|F12_uc003mgn.3_Missense_Mutation_p.P25H|F12_uc010jkl.2_RNA	NM_000505	NP_000496	P00748	FA12_HUMAN	coagulation factor XII precursor	494	Peptidase S1.				Factor XII activation|fibrinolysis|innate immune response|positive regulation of blood coagulation|positive regulation of fibrinolysis|positive regulation of plasminogen activation|protein autoprocessing|response to misfolded protein|zymogen activation	extracellular space|plasma membrane	serine-type endopeptidase activity				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGGTCTCGGAGGGTCGCGCGG	0.672									Hereditary_Angioedema			
DDX41	51428	broad.mit.edu	37	5	176939332	176939332	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:176939332T>C	uc003mho.2	-	15	1633	c.1612A>G	c.(1612-1614)AAA>GAA	p.K538E	DOK3_uc003mhi.3_5'Flank|DOK3_uc003mhj.3_5'Flank|DOK3_uc003mhk.2_5'Flank|DOK3_uc003mhl.2_5'Flank|DDX41_uc003mhm.2_Missense_Mutation_p.K318E|DDX41_uc003mhn.2_Missense_Mutation_p.K407E|DDX41_uc003mhp.2_Missense_Mutation_p.K407E	NM_016222	NP_057306	Q9UJV9	DDX41_HUMAN	DEAD-box protein abstrakt	538	Helicase C-terminal.				apoptosis|multicellular organismal development	catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|zinc ion binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			CCACACGCTTTGTTGATGAAG	0.622												
FAM193B	54540	broad.mit.edu	37	5	176958383	176958383	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:176958383C>T	uc003mhs.3	-	7	2665	c.1076G>A	c.(1075-1077)CGA>CAA	p.R359Q	FAM193B_uc003mht.2_Missense_Mutation_p.R18Q|FAM193B_uc003mhu.2_Intron|FAM193B_uc003mhv.2_Missense_Mutation_p.R18Q|FAM193B_uc003mhw.2_RNA	NM_019057	NP_061930	E9PET5	E9PET5_HUMAN	hypothetical protein LOC54540	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0						ATCCACATCTCGGTGGTCCAC	0.657												
N4BP3	23138	broad.mit.edu	37	5	177548744	177548744	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:177548744C>T	uc003mik.1	+	5	1624	c.1377C>T	c.(1375-1377)AGC>AGT	p.S459S	N4BP3_uc003mil.1_Silent_p.S128S	NM_015111	NP_055926	O15049	N4BP3_HUMAN	Nedd4 binding protein 3	459	Potential.					cytoplasmic vesicle membrane					0	all_cancers(89;0.00294)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAGGAGGCAGCGAGGCCAGAG	0.682												
CLK4	57396	broad.mit.edu	37	5	178040801	178040801	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:178040801G>A	uc003mjf.1	-	6	694	c.586C>T	c.(586-588)CGT>TGT	p.R196C	CLK4_uc003mjg.1_Missense_Mutation_p.R160C|CLK4_uc010jku.1_Missense_Mutation_p.R16C|CLK4_uc003mjh.1_Missense_Mutation_p.R16C|CLK4_uc010jkv.1_RNA|CLK4_uc011dgg.1_Missense_Mutation_p.R196C|CLK4_uc011dgh.1_Missense_Mutation_p.R16C	NM_020666	NP_065717	Q9HAZ1	CLK4_HUMAN	CDC-like kinase 4	196	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(1)	1	all_cancers(89;0.000969)|Renal(175;0.000159)|all_epithelial(37;0.000451)|Lung NSC(126;0.00545)|all_lung(126;0.00918)	all_cancers(40;0.0272)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.235)		TCACGGTAACGGCCTACATTT	0.368												
GRM6	2916	broad.mit.edu	37	5	178413444	178413444	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:178413444A>G	uc003mjr.2	-	8	1990	c.1811T>C	c.(1810-1812)GTG>GCG	p.V604A	GRM6_uc003mjq.2_5'Flank|GRM6_uc010jla.1_Missense_Mutation_p.V187A|GRM6_uc003mjs.1_Missense_Mutation_p.V224A	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	604	Helical; Name=1; (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GAAGGTGGCCACCACCGTGGT	0.687												
ADAMTS2	9509	broad.mit.edu	37	5	178552049	178552049	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:178552049G>A	uc003mjw.2	-	19	2883	c.2883C>T	c.(2881-2883)GAC>GAT	p.D961D		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	961	TSP type-1 3.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CGGGCCGGGCGTCATTGCAGT	0.701												
ADAMTS2	9509	broad.mit.edu	37	5	178699958	178699958	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:178699958C>T	uc003mjw.2	-	3	642	c.642G>A	c.(640-642)CGG>CGA	p.R214R	ADAMTS2_uc011dgm.1_Silent_p.R214R	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	214					collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		ACGTGGGTGGCCGGCGATACA	0.662												
RUFY1	80230	broad.mit.edu	37	5	179021905	179021905	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:179021905C>T	uc003mka.1	+	12	1452	c.1452C>T	c.(1450-1452)ATC>ATT	p.I484I	RUFY1_uc003mkb.1_Silent_p.I376I|RUFY1_uc003mkc.1_Silent_p.I376I|RUFY1_uc003mkd.1_Silent_p.I86I	NM_025158	NP_079434	Q96T51	RUFY1_HUMAN	RUN and FYVE domain-containing 1 isoform a	484	Potential.				endocytosis|protein transport	early endosome membrane	lipid binding|zinc ion binding			ovary(4)|breast(1)	5	all_cancers(89;0.00018)|all_epithelial(37;8.37e-05)|Renal(175;0.000159)|Lung NSC(126;0.00108)|all_lung(126;0.00195)	all_cancers(40;0.0322)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ATGAAGCCATCACATCCTTTG	0.463										HNSCC(44;0.11)		
TBC1D9B	23061	broad.mit.edu	37	5	179290695	179290695	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:179290695T>C	uc003mlh.2	-	22	3543	c.3506A>G	c.(3505-3507)GAC>GGC	p.D1169G	TBC1D9B_uc003mli.2_Missense_Mutation_p.D1152G|TBC1D9B_uc003mlj.2_Missense_Mutation_p.D1151G|TBC1D9B_uc003mlf.2_Missense_Mutation_p.D243G|TBC1D9B_uc003mlg.2_Missense_Mutation_p.D328G|TBC1D9B_uc011dgv.1_Missense_Mutation_p.D328G	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	1169						integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GTCTGCAAGGTCTTCACATTG	0.632												
TBC1D9B	23061	broad.mit.edu	37	5	179320379	179320379	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:179320379G>A	uc003mlh.2	-	5	703	c.666C>T	c.(664-666)CGC>CGT	p.R222R	TBC1D9B_uc003mli.2_Silent_p.R222R|TBC1D9B_uc003mlj.2_Silent_p.R222R	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	222						integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCTCCTGGTCGCGGGTGTCCA	0.612												
MAPK9	5601	broad.mit.edu	37	5	179663507	179663507	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:179663507G>A	uc003mls.3	-	12	1423	c.1152C>T	c.(1150-1152)AAC>AAT	p.N384N	MAPK9_uc003mlt.3_3'UTR|MAPK9_uc010jlc.2_Silent_p.N384N|MAPK9_uc003mlv.3_3'UTR	NM_002752	NP_002743	P45984	MK09_HUMAN	mitogen-activated protein kinase 9 isoform JNK2	384					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|protein binding|protein binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)	4	all_cancers(89;6.54e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0236)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AAGGAGTGGCGTTGCTACTTA	0.488												
CNOT6	57472	broad.mit.edu	37	5	179994949	179994949	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:179994949A>G	uc003mlx.2	+	9	1322	c.973A>G	c.(973-975)AAC>GAC	p.N325D	CNOT6_uc010jld.2_Missense_Mutation_p.N325D|CNOT6_uc010jle.2_Missense_Mutation_p.N320D	NM_015455	NP_056270	Q9ULM6	CNOT6_HUMAN	CCR4-NOT transcription complex, subunit 6	325					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	exonuclease activity|metal ion binding|protein binding|RNA binding				0	all_cancers(89;3.3e-05)|all_epithelial(37;7.38e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00543)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.023)		GACAAAAGATAACATTGGGGT	0.428												
BTNL9	153579	broad.mit.edu	37	5	180477189	180477189	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:180477189T>C	uc003mmt.2	+	4	787	c.556T>C	c.(556-558)TGG>CGG	p.W186R	BTNL9_uc011dhi.1_Missense_Mutation_p.W117R	NM_152547	NP_689760	Q6UXG8	BTNL9_HUMAN	butyrophilin-like 9 precursor	186	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(89;2.45e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TAAGGTTCAGTGGAGAGACCA	0.582												
TUBB2A	7280	broad.mit.edu	37	6	3154142	3154142	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:3154142G>A	uc003mvc.2	-	4	1379	c.1293C>T	c.(1291-1293)GAC>GAT	p.D431D	TUBB2A_uc003mvb.2_Silent_p.D424D|TUBB2A_uc003mvd.2_Silent_p.D394D	NM_001069	NP_001060	Q13885	TBB2A_HUMAN	tubulin, beta 2	431					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			skin(1)	1	Ovarian(93;0.0386)	all_hematologic(90;0.0895)				CCCCTTGTTCGTCGGCCGTGG	0.567												
FARS2	10667	broad.mit.edu	37	6	5369143	5369143	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:5369143G>A	uc010jnv.1	+	2	676	c.340G>A	c.(340-342)GAC>AAC	p.D114N	FARS2_uc003mwr.2_Missense_Mutation_p.D114N|FARS2_uc003mws.1_Missense_Mutation_p.D114N	NM_006567	NP_006558	O95363	SYFM_HUMAN	phenylalanyl-tRNA synthetase 2 precursor	114					phenylalanyl-tRNA aminoacylation|tRNA processing	mitochondrial matrix|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding				0	Ovarian(93;0.11)	all_hematologic(90;0.0104)			L-Phenylalanine(DB00120)	CTCGGTCTACGACAACCTTTC	0.552												
F13A1	2162	broad.mit.edu	37	6	6224953	6224953	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:6224953G>A	uc003mwv.2	-	7	1062	c.939C>T	c.(937-939)GGC>GGT	p.G313G	F13A1_uc011dib.1_Silent_p.G250G	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	313					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	CCCAGCATTGGCCATACCGGA	0.428												
DSP	1832	broad.mit.edu	37	6	7580913	7580913	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:7580913G>A	uc003mxp.1	+	23	4769	c.4490G>A	c.(4489-4491)CGG>CAG	p.R1497Q	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1497	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ACAAATGACCGGAAATGCCTG	0.403												
TXNDC5	81567	broad.mit.edu	37	6	7904918	7904918	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:7904918T>C	uc003mxv.2	-	2	334	c.302A>G	c.(301-303)GAC>GGC	p.D101G	TXNDC5_uc003mxw.2_Missense_Mutation_p.D58G|TXNDC5_uc010jnz.2_5'UTR|TXNDC5_uc010joa.1_5'UTR	NM_030810	NP_110437	Q8NBS9	TXND5_HUMAN	thioredoxin domain containing 5 isoform 1	101	Thioredoxin 1.				anti-apoptosis|cell redox homeostasis|cellular membrane organization|glycerol ether metabolic process|post-Golgi vesicle-mediated transport	endoplasmic reticulum lumen|lysosomal lumen	electron carrier activity|isomerase activity|protein disulfide oxidoreductase activity				0	Ovarian(93;0.0398)					GTCTCCCAGGTCATTCCAAGT	0.572												
MAK	4117	broad.mit.edu	37	6	10764770	10764770	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:10764770T>C	uc003mzl.2	-	13	2016	c.1787A>G	c.(1786-1788)AAC>AGC	p.N596S	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Missense_Mutation_p.N596S	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	596					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				AATATTTAGGTTTTTTGCTGT	0.468												
MAK	4117	broad.mit.edu	37	6	10791920	10791920	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:10791920T>A	uc003mzl.2	-	9	1533	c.1304A>T	c.(1303-1305)GAT>GTT	p.D435V	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Missense_Mutation_p.D435V|MAK_uc010jov.1_RNA	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	435					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				AAATGGAGAATCTTTTTTCCT	0.348												
NEDD9	4739	broad.mit.edu	37	6	11190367	11190367	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:11190367A>G	uc003mzv.2	-	5	1902	c.1735T>C	c.(1735-1737)TAC>CAC	p.Y579H	NEDD9_uc010joz.2_Missense_Mutation_p.Y579H|NEDD9_uc003mzw.3_Missense_Mutation_p.Y433H	NM_006403	NP_006394	Q14511	CASL_HUMAN	neural precursor cell expressed, developmentally	579					actin filament bundle assembly|cell adhesion|cell division|integrin-mediated signaling pathway|mitosis|regulation of growth	cell cortex|focal adhesion|Golgi apparatus|lamellipodium|nucleus	protein binding				0	Breast(50;0.0768)|Ovarian(93;0.152)	all_hematologic(90;0.135)	Epithelial(50;0.0647)|all cancers(50;0.179)			CCGTGTGGGTACTCCGTTGAG	0.622												
HIVEP1	3096	broad.mit.edu	37	6	12131031	12131031	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:12131031C>T	uc003nac.2	+	6	6420	c.6241C>T	c.(6241-6243)CGA>TGA	p.R2081*	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2081					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				TGTATATGTCCGAGGCAGGGG	0.343												
GFOD1	54438	broad.mit.edu	37	6	13486930	13486930	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:13486930C>T	uc003nat.1	-	1	858	c.193G>A	c.(193-195)GAC>AAC	p.D65N	GFOD1_uc003nas.1_5'Flank|C6orf114_uc003nav.2_5'Flank	NM_018988	NP_061861	Q9NXC2	GFOD1_HUMAN	glucose-fructose oxidoreductase domain	65						extracellular region	binding|oxidoreductase activity			ovary(2)	2	Breast(50;0.0296)|Ovarian(93;0.0454)	all_hematologic(90;0.135)	Epithelial(50;0.0348)|BRCA - Breast invasive adenocarcinoma(129;0.1)|all cancers(50;0.108)			CACACCAAGTCCACGTCCTGA	0.627												
SIRT5	23408	broad.mit.edu	37	6	13595769	13595769	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:13595769C>A	uc003nay.2	+	6	832	c.536C>A	c.(535-537)CCA>CAA	p.P179Q	SIRT5_uc003naw.2_Missense_Mutation_p.P179Q|SIRT5_uc003nax.2_Missense_Mutation_p.P71Q|SIRT5_uc011dit.1_Missense_Mutation_p.P179Q	NM_012241	NP_036373	Q9NXA8	SIRT5_HUMAN	sirtuin 5 isoform 1	179	Deacetylase sirtuin-type.				chromatin silencing|protein ADP-ribosylation|protein deacetylation	mitochondrial intermembrane space|mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|zinc ion binding			skin(2)|upper_aerodigestive_tract(1)	3	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.176)		Suramin(DB04786)	TACAAGAGTCCAATTTGTCCA	0.338												
MYLIP	29116	broad.mit.edu	37	6	16141988	16141988	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:16141988G>T	uc003nbq.2	+	3	648	c.411G>T	c.(409-411)AAG>AAT	p.K137N	MYLIP_uc003nbr.2_5'UTR	NM_013262	NP_037394	Q8WY64	MYLIP_HUMAN	myosin regulatory light chain interacting	137	FERM.				cellular component movement|nervous system development	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|ubiquitin-protein ligase activity|zinc ion binding			pancreas(1)	1	Breast(50;0.0799)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.241)			ACACTGCCAAGTATAACTATG	0.498												
ATXN1	6310	broad.mit.edu	37	6	16326924	16326924	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:16326924T>C	uc003nbt.2	-	8	2589	c.1618A>G	c.(1618-1620)ACC>GCC	p.T540A	ATXN1_uc010jpi.2_Missense_Mutation_p.T540A|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	540	Self-association.|Interaction with USP7.|RNA-binding.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				GCGGCCTGGGTGACCAGGGCC	0.667												
ATXN1	6310	broad.mit.edu	37	6	16326947	16326947	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:16326947T>C	uc003nbt.2	-	8	2566	c.1595A>G	c.(1594-1596)AAC>AGC	p.N532S	ATXN1_uc010jpi.2_Missense_Mutation_p.N532S|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	532	Self-association.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				AGGGTTGAAGTTCTCGCTCTT	0.672												
NUP153	9972	broad.mit.edu	37	6	17628924	17628924	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:17628924G>A	uc003ncd.1	-	18	3706	c.3506C>T	c.(3505-3507)GCC>GTC	p.A1169V	NUP153_uc011dje.1_Missense_Mutation_p.A1200V|NUP153_uc010jpl.1_Missense_Mutation_p.A1127V	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	1169					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			GGCAAAAGTGGCTTTTGCTGG	0.323												
NUP153	9972	broad.mit.edu	37	6	17637582	17637582	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:17637582G>A	uc003ncd.1	-	16	2466	c.2266C>T	c.(2266-2268)CGA>TGA	p.R756*	NUP153_uc011dje.1_Nonsense_Mutation_p.R787*|NUP153_uc010jpl.1_Nonsense_Mutation_p.R714*	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	756					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			GTAAGGGCTCGCTTCACACAA	0.438												
CDKAL1	54901	broad.mit.edu	37	6	21065338	21065338	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:21065338A>G	uc003ndc.1	+	12	1289	c.1115A>G	c.(1114-1116)CAG>CGG	p.Q372R	CDKAL1_uc003ndd.1_Missense_Mutation_p.Q372R|CDKAL1_uc003nde.1_Missense_Mutation_p.Q302R|CDKAL1_uc003ndf.1_5'UTR	NM_017774	NP_060244	Q5VV42	CDKAL_HUMAN	CDK5 regulatory subunit associated protein	372					RNA modification	integral to membrane	4 iron, 4 sulfur cluster binding|metal ion binding|transferase activity			ovary(2)	2	all_epithelial(95;0.0708)|Breast(50;0.131)|Ovarian(93;0.227)		OV - Ovarian serous cystadenocarcinoma(7;0.0241)|all cancers(50;0.123)|Epithelial(50;0.248)			GAAACAGATCAGGATTTTCAA	0.343												
PRL	5617	broad.mit.edu	37	6	22290499	22290499	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:22290499A>G	uc003ndp.2	-	4	915	c.396T>C	c.(394-396)GGT>GGC	p.G132G	PRL_uc003ndo.2_Silent_p.G133G|PRL_uc003ndq.2_Silent_p.G132G	NM_000948	NP_000939	P01236	PRL_HUMAN	prolactin precursor	132					cell proliferation|cell surface receptor linked signaling pathway|female pregnancy|lactation|positive regulation of JAK-STAT cascade|regulation of multicellular organism growth	cytosol|extracellular region	hormone activity|prolactin receptor binding				0	Ovarian(93;0.163)					CTTCTTGCATACCACGTACTT	0.483												
MRS2	57380	broad.mit.edu	37	6	24403466	24403466	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:24403466T>C	uc003neb.2	+	1	312	c.190_splice	c.e1+2	p.G64_splice	MRS2_uc003nea.2_Splice_Site_p.G64_splice|MRS2_uc011djl.1_Splice_Site_p.G64_splice|MRS2_uc011djm.1_Splice_Site|MRS2_uc011djn.1_Splice_Site_p.G64_splice	NM_020662	NP_065713	Q9HD23	MRS2_HUMAN	MRS2-like, magnesium homeostasis factor						ion transport	integral to membrane|mitochondrial inner membrane					0						GCGTGGCAGGTACTGCCCTTC	0.711												
MRS2	57380	broad.mit.edu	37	6	24423918	24423918	+	Missense_Mutation	SNP	G	G	A	rs114959453	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:24423918G>A	uc003neb.2	+	11	1450	c.1328G>A	c.(1327-1329)CGT>CAT	p.R443H	MRS2_uc011djl.1_Missense_Mutation_p.R446H|MRS2_uc011djm.1_RNA|MRS2_uc011djn.1_Missense_Mutation_p.R393H|MRS2_uc003nec.2_Missense_Mutation_p.R320H	NM_020662	NP_065713	Q9HD23	MRS2_HUMAN	MRS2-like, magnesium homeostasis factor	443	Mitochondrial matrix (Potential).				ion transport	integral to membrane|mitochondrial inner membrane					0						CTAACAAACCGTTAGGAACAG	0.383												
TDP2	51567	broad.mit.edu	37	6	24666997	24666997	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:24666997A>G	uc003nej.2	-	1	119	c.94T>C	c.(94-96)TTT>CTT	p.F32L	TDP2_uc003nei.2_5'Flank|TDP2_uc010jpu.1_Missense_Mutation_p.F32L|ACOT13_uc010jpv.2_5'Flank|ACOT13_uc003nek.2_5'Flank	NM_016614	NP_057698	O95551	TYDP2_HUMAN	TRAF and TNF receptor-associated protein	32					cell surface receptor linked signaling pathway|double-strand break repair	PML body	5'-tyrosyl-DNA phosphodiesterase activity|magnesium ion binding|nuclease activity|protein binding|transcription corepressor activity			ovary(1)|lung(1)	2						ACCGAGGCAAACTCCACACAC	0.627								Direct_reversal_of_damage|Editing_and_processing_nucleases				
SCGN	10590	broad.mit.edu	37	6	25652698	25652698	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:25652698C>T	uc003nfb.2	+	1	270	c.67C>T	c.(67-69)CGC>TGC	p.R23C	SCGN_uc010jpz.2_5'UTR	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	23	EF-hand 1.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						GGTCTGGCAGCGCTTTGATGC	0.612												
HIST1H2BB	3018	broad.mit.edu	37	6	26043727	26043727	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:26043727G>A	uc003nfu.2	-	1	159	c.159C>T	c.(157-159)ACC>ACT	p.T53T	HIST1H3C_uc003nfv.2_5'Flank	NM_021062	NP_066406	P33778	H2B1B_HUMAN	histone cluster 1, H2bb	53					nucleosome assembly	nucleosome|nucleus	DNA binding				0						ATGAGATGCCGGTGTCGGGGT	0.542												
HIST1H1C	3006	broad.mit.edu	37	6	26056487	26056487	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:26056487A>G	uc003nfw.2	-	1	213	c.170T>C	c.(169-171)GTT>GCT	p.V57A		NM_005319	NP_005310	P16403	H12_HUMAN	histone cluster 1, H1c	57	H15.				nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(3)|skin(2)	5						AGCCAGAGAAACTCCGCTACG	0.572												
HIST1H2BD	3017	broad.mit.edu	37	6	26158506	26158506	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:26158506A>T	uc003ngr.2	+	1	158	c.109A>T	c.(109-111)AGC>TGC	p.S37C	HIST1H2BD_uc003ngs.2_Missense_Mutation_p.S37C	NM_021063	NP_066407	P58876	H2B1D_HUMAN	histone cluster 1, H2bd	37					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|pancreas(1)	2						CCGCAAGGAGAGCTATTCAGT	0.542												
HIST1H2BH	8345	broad.mit.edu	37	6	26251978	26251978	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:26251978C>T	uc003nhh.2	+	1	100	c.100C>T	c.(100-102)CGC>TGC	p.R34C	HIST1H3F_uc003nhg.1_5'Flank	NM_003524	NP_003515	Q93079	H2B1H_HUMAN	histone cluster 1, H2bh	34					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(3)	3						TAAACGCAGCCGCAAGGAGAG	0.557												
BTN2A1	11120	broad.mit.edu	37	6	26463655	26463655	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:26463655C>T	uc003nib.1	+	4	826	c.614C>T	c.(613-615)ACG>ATG	p.T205M	BTN2A1_uc003nic.1_Missense_Mutation_p.T205M|BTN2A1_uc003nid.1_Missense_Mutation_p.T53M|BTN2A1_uc011dko.1_Missense_Mutation_p.T144M|BTN2A1_uc010jqk.1_5'Flank	NM_007049	NP_008980	Q7KYR7	BT2A1_HUMAN	butyrophilin, subfamily 2, member A1 isoform 1	205	Extracellular (Potential).				lipid metabolic process	integral to plasma membrane				ovary(1)|skin(1)	2						ATGGTCACCACGGCTGTGATC	0.542												
HIST1H2AH	85235	broad.mit.edu	37	6	27114940	27114940	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:27114940T>C	uc003niz.2	+	1	33	c.33T>C	c.(31-33)GCT>GCC	p.A11A	HIST1H2BK_uc003nix.1_5'Flank|hsa-mir-3143|MI0014167_5'Flank	NM_080596	NP_542163	Q96KK5	H2A1H_HUMAN	histone cluster 1, H2ah	11					nucleosome assembly	nucleosome|nucleus	DNA binding				0						GCGGTAAAGCTCGCGCCAAGG	0.582												
HIST1H4L	8368	broad.mit.edu	37	6	27841075	27841075	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:27841075T>C	uc003njz.2	-	1	215	c.214A>G	c.(214-216)ACC>GCC	p.T72A	HIST1H3I_uc003njy.2_5'Flank	NM_003546	NP_003537	P62805	H4_HUMAN	histone cluster 1, H4l	72					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)|breast(1)	2						TCCGTGTAGGTAACTGCATCG	0.562												
ZNF165	7718	broad.mit.edu	37	6	28056918	28056918	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:28056918A>T	uc003nkg.2	+	5	2212	c.1128A>T	c.(1126-1128)GAA>GAT	p.E376D	ZNF165_uc003nkh.2_Missense_Mutation_p.E376D|ZNF165_uc003nki.3_Missense_Mutation_p.E376D|ZSCAN12P1_uc003nkj.3_5'Flank	NM_003447	NP_003438	P49910	ZN165_HUMAN	zinc finger protein 165	376	C2H2-type 3.				viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AATGTAATGAATGTGGGAAAA	0.448												
ZSCAN16	80345	broad.mit.edu	37	6	28093556	28093556	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:28093556C>T	uc003nkm.2	+	2	435	c.335C>T	c.(334-336)GCA>GTA	p.A112V	uc010jqw.1_Intron|uc003nkk.1_RNA|uc003nkl.1_Intron|ZSCAN16_uc011dky.1_Missense_Mutation_p.A112V	NM_025231	NP_079507	Q9H4T2	ZSC16_HUMAN	zinc finger and SCAN domain containing 16	112	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)	1						GGAGAGGAGGCAGTGACGGTA	0.328												
ZNF193	7746	broad.mit.edu	37	6	28200920	28200920	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:28200920C>T	uc003nkq.1	+	4	1264	c.1149C>T	c.(1147-1149)CGC>CGT	p.R383R	ZNF193_uc003nkr.1_Silent_p.R383R|ZNF193_uc010jqz.1_Silent_p.R434R	NM_006299	NP_006290	O15535	ZN193_HUMAN	zinc finger protein 193	383	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACCTCATTCGCCATCAGAAGA	0.498												
NKAPL	222698	broad.mit.edu	37	6	28227368	28227368	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:28227368G>A	uc003nkt.2	+	1	271	c.219G>A	c.(217-219)GGG>GGA	p.G73G	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532	Q5M9Q1	NKAPL_HUMAN	NFKB activating protein-like	73										upper_aerodigestive_tract(1)|ovary(1)	2						GGTCGCGAGGGCGGCTCCCAA	0.612												
ZNF323	64288	broad.mit.edu	37	6	28294405	28294405	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:28294405T>C	uc003nla.2	-	4	1159	c.759A>G	c.(757-759)GTA>GTG	p.V253V	ZNF323_uc003nld.2_Silent_p.V253V|ZNF323_uc010jra.2_Silent_p.V253V|ZNF323_uc003nlb.2_Silent_p.V94V|ZNF323_uc010jrb.2_Silent_p.V94V|ZNF323_uc003nlc.2_Silent_p.V253V	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323	253	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GCTCAATGAGTACTGAACTCT	0.502												
ZNF311	282890	broad.mit.edu	37	6	28963503	28963503	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:28963503G>A	uc003nlu.2	-	7	1789	c.1276C>T	c.(1276-1278)CGG>TGG	p.R426W	ZNF311_uc011dlk.1_Missense_Mutation_p.R334W|ZNF311_uc003nlv.2_Missense_Mutation_p.R334W	NM_001010877	NP_001010877	Q5JNZ3	ZN311_HUMAN	zinc finger protein 311	426	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						TCTGAGCTCCGACTGAAGGCC	0.512												
OR2B3	442184	broad.mit.edu	37	6	29054534	29054534	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:29054534A>G	uc003nlx.2	-	1	557	c.492T>C	c.(490-492)CTT>CTC	p.L164L		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						GTGGCATGTTAAGAGTCAAGG	0.483												
OR2J2	26707	broad.mit.edu	37	6	29141711	29141711	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:29141711T>C	uc011dlm.1	+	1	401	c.299T>C	c.(298-300)GTT>GCT	p.V100A		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	100	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGTTGCATGGTTCAACTTTAC	0.478												
OR2J2	26707	broad.mit.edu	37	6	29142197	29142197	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:29142197A>G	uc011dlm.1	+	1	887	c.785A>G	c.(784-786)CAG>CGG	p.Q262R		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATGTATCTCCAGCCACCATCA	0.428												
OR14J1	442191	broad.mit.edu	37	6	29275052	29275052	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:29275052G>A	uc011dln.1	+	1	586	c.586G>A	c.(586-588)GCA>ACA	p.A196T		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	196	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TAATGAGATTGCACTGGCTGC	0.438												
OR11A1	26531	broad.mit.edu	37	6	29394640	29394640	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:29394640T>C	uc003nmg.2	-	1	870	c.779A>G	c.(778-780)TAT>TGT	p.Y260C		NM_013937	NP_039225	Q9GZK7	O11A1_HUMAN	olfactory receptor, family 11, subfamily A,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGGTGCAACATAAAAGATCAT	0.522												
HLA-F	3134	broad.mit.edu	37	6	29694737	29694737	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:29694737T>A	uc003nno.3	+	7	1238	c.1114T>A	c.(1114-1116)TAT>AAT	p.Y372N	HLA-F_uc011dlx.1_Missense_Mutation_p.Y372N|HLA-F_uc011dly.1_RNA|LOC285830_uc003nnp.2_RNA|LOC285830_uc011dlz.1_RNA	NM_001098479	NP_001091949	P30511	HLAF_HUMAN	major histocompatibility complex, class I, F	Error:Variant_position_missing_in_P30511_after_alignment					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity				0						CTTCCAAGGATATTTGGGCTG	0.493												
HLA-G	3135	broad.mit.edu	37	6	29796520	29796520	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:29796520G>A	uc003nnw.2	+	4	722	c.544G>A	c.(544-546)GCC>ACC	p.A182T	HLA-G_uc011dmb.1_Missense_Mutation_p.A154T|HLA-G_uc003raj.3_Missense_Mutation_p.A187T|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118	P17693	HLAG_HUMAN	major histocompatibility complex, class I, G	182	Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide antigen via MHC class I|cellular defense response|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity			ovary(3)|central_nervous_system(1)	4						ACAAAGGAGAGCCTACCTGGA	0.657												
TRIM31	11074	broad.mit.edu	37	6	30078246	30078246	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:30078246C>T	uc003npg.1	-	4	833	c.723G>A	c.(721-723)ATG>ATA	p.M241I	TRIM31_uc003npi.3_RNA	NM_007028	NP_008959	Q9BZY9	TRI31_HUMAN	tripartite motif protein 31	241						mitochondrion	ligase activity|zinc ion binding			lung(1)	1						GCCTGGGTGGCATGTTCTGCT	0.557												
PPP1R10	5514	broad.mit.edu	37	6	30571371	30571371	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:30571371C>T	uc003nqn.1	-	16	2197	c.1645G>A	c.(1645-1647)GCA>ACA	p.A549T	PPP1R10_uc010jsc.1_Missense_Mutation_p.A203T	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	549	Gly-rich.|Interaction with WDR82 (By similarity).				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						GAGCCTCCTGCCCCATCAGGT	0.537												
MDC1	9656	broad.mit.edu	37	6	30673546	30673546	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:30673546A>G	uc003nrg.3	-	10	3854	c.3414T>C	c.(3412-3414)ACT>ACC	p.T1138T	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Silent_p.T745T	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1138	Pro-rich.			Missing (in Ref. 2; CAH18685).	cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						TGGGCTTGGGAGTGACTGGCT	0.577								Other_conserved_DNA_damage_response_genes				
IER3	8870	broad.mit.edu	37	6	30712102	30712102	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:30712102A>G	uc003nrn.2	-	1	226	c.194T>C	c.(193-195)GTT>GCT	p.V65A	FLOT1_uc003nrm.2_5'Flank|FLOT1_uc011dmr.1_5'Flank	NM_003897	NP_003888	P46695	IEX1_HUMAN	immediate early response 3	65	Cytoplasmic (Potential).				anatomical structure morphogenesis|anti-apoptosis|apoptosis	integral to membrane	protein binding				0						AGGGTAGAGAACCCTGCGGCT	0.697												
DDR1	780	broad.mit.edu	37	6	30866961	30866961	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:30866961C>T	uc003nrr.2	+	19	2889	c.2630C>T	c.(2629-2631)CCG>CTG	p.P877L	DDR1_uc010jse.2_Missense_Mutation_p.P840L|DDR1_uc003nrq.2_Missense_Mutation_p.P840L|DDR1_uc003nrs.2_Missense_Mutation_p.P877L|DDR1_uc003nrt.2_Missense_Mutation_p.P840L|DDR1_uc011dms.1_Missense_Mutation_p.P858L|DDR1_uc003nru.2_Missense_Mutation_p.P840L|DDR1_uc003nrv.2_Missense_Mutation_p.P883L|DDR1_uc003nrz.1_Silent_p.P241P	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	877	Cytoplasmic (Potential).|Protein kinase.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CCTGCCTGCCCGCAGGGCCTA	0.582												
VARS2	57176	broad.mit.edu	37	6	30887979	30887979	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:30887979G>A	uc003nsc.1	+	12	1911	c.1279G>A	c.(1279-1281)GGG>AGG	p.G427R	VARS2_uc011dmx.1_Missense_Mutation_p.G427R|VARS2_uc011dmy.1_Missense_Mutation_p.G287R|VARS2_uc011dmz.1_Missense_Mutation_p.G457R|VARS2_uc011dna.1_Missense_Mutation_p.G425R|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_5'UTR|VARS2_uc010jsg.1_5'UTR|VARS2_uc010jsh.1_5'Flank	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	427					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						CTCCCTCTGCGGGGACTGGCT	0.577												
CCHCR1	54535	broad.mit.edu	37	6	31113487	31113487	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:31113487A>G	uc003nsr.3	-	11	1535	c.1412T>C	c.(1411-1413)GTC>GCC	p.V471A	CCHCR1_uc011dne.1_Missense_Mutation_p.V471A|CCHCR1_uc003nsq.3_Missense_Mutation_p.V524A|CCHCR1_uc003nsp.3_Missense_Mutation_p.V560A|CCHCR1_uc010jsk.1_Missense_Mutation_p.V471A	NM_019052	NP_061925	Q8TD31	CCHCR_HUMAN	coiled-coil alpha-helical rod protein 1 isoform	471					cell differentiation|multicellular organismal development	cytoplasm|nucleus	protein binding			skin(1)	1						AATGGTGTGGACCTTGCGGAC	0.612												
HSPA1L	3305	broad.mit.edu	37	6	31779558	31779558	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:31779558A>G	uc003nxh.2	-	2	375	c.192T>C	c.(190-192)AAT>AAC	p.N64N	HSPA1L_uc010jte.2_Silent_p.N64N	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	64					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGTTCTGGGGATTCATTGCTA	0.502												
EHMT2	10919	broad.mit.edu	37	6	31851644	31851644	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:31851644T>C	uc003nxz.1	-	22	2865	c.2855A>G	c.(2854-2856)TAC>TGC	p.Y952C	EHMT2_uc003nxv.1_5'UTR|EHMT2_uc003nxw.1_5'UTR|EHMT2_uc003nxx.1_Missense_Mutation_p.Y150C|EHMT2_uc003nxy.1_Missense_Mutation_p.Y750C|EHMT2_uc011don.1_Missense_Mutation_p.Y975C|EHMT2_uc003nya.1_Missense_Mutation_p.Y918C	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	952					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						CTCTGAGATGTACTTGTAATC	0.597												
SKIV2L	6499	broad.mit.edu	37	6	31931254	31931254	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:31931254T>C	uc003nyn.1	+	14	1857	c.1468T>C	c.(1468-1470)TAT>CAT	p.Y490H	SKIV2L_uc011dou.1_Missense_Mutation_p.Y332H|SKIV2L_uc011dov.1_Missense_Mutation_p.Y297H	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	490						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						CCTGGAGCACTATCTTTTCAC	0.567												
TNXB	7148	broad.mit.edu	37	6	32017065	32017065	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:32017065A>G	uc003nzl.2	-	28	9935	c.9733T>C	c.(9733-9735)TCC>CCC	p.S3245P	TNXB_uc003nzh.1_5'Flank	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3292	Fibronectin type-III 24.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCCACGGTGGACACTGGGCCC	0.652												
HLA-DQB1	3119	broad.mit.edu	37	6	32632719	32632719	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:32632719A>G	uc003obw.2	-	2	317	c.235T>C	c.(235-237)TAC>CAC	p.Y79H	HLA-DQB1_uc010juc.1_Missense_Mutation_p.Y34H|HLA-DQB1_uc003obv.2_Missense_Mutation_p.Y79H|HLA-DQB1_uc011dqd.1_Missense_Mutation_p.Y79H|HLA-DQB1_uc011dqe.1_Missense_Mutation_p.Y79H	NM_002123	NP_002114	P01920	DQB1_HUMAN	major histocompatibility complex, class II, DQ	79	Extracellular (Potential).|Beta-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACCGCGCGGTACACCCCCACG	0.637									Melanoma_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia|T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Sj_gren_syndrome			
BRD2	6046	broad.mit.edu	37	6	32944141	32944141	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:32944141A>G	uc003ocn.3	+	6	2426	c.725A>G	c.(724-726)CAC>CGC	p.H242R	BRD2_uc003oco.2_RNA|BRD2_uc003ocq.3_Missense_Mutation_p.H242R|BRD2_uc003ocp.3_Missense_Mutation_p.H122R|BRD2_uc010juh.2_Missense_Mutation_p.H242R	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	242					spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						AACATTCCCCACCCATCAGTC	0.567												
RING1	6015	broad.mit.edu	37	6	33177562	33177562	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:33177562G>A	uc003odk.2	+	3	432	c.238G>A	c.(238-240)GGG>AGG	p.G80R	RING1_uc011dqx.1_Missense_Mutation_p.G80R|RING1_uc003odl.2_Missense_Mutation_p.G51R	NM_002931	NP_002922	Q06587	RING1_HUMAN	ring finger protein 1	80	Necessary for transcriptional repression (By similarity).|RING-type.				histone H2A monoubiquitination|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear speck|PcG protein complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CCTACGGAGCGGGTAATAGGA	0.517												
TAPBP	6892	broad.mit.edu	37	6	33281604	33281604	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:33281604G>A	uc003odx.1	-	2	246	c.75C>T	c.(73-75)ATC>ATT	p.I25I	TAPBP_uc010jus.1_Silent_p.I25I|TAPBP_uc003ody.2_Silent_p.I25I|TAPBP_uc003odz.2_Silent_p.I25I|TAPBP_uc010jut.1_Silent_p.I25I|TAPBP_uc011drc.1_Silent_p.I25I	NM_003190	NP_003181	O15533	TPSN_HUMAN	tapasin isoform 1 precursor	25	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|immune response|peptide antigen stabilization|protein complex assembly|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|MHC class I peptide loading complex|microsome	MHC class I protein binding|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|unfolded protein binding			ovary(1)	1						ACCAACACTCGATCACCGCGG	0.687												
SYNGAP1	8831	broad.mit.edu	37	6	33411288	33411288	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:33411288G>A	uc011dri.1	+	15	3154	c.2959G>A	c.(2959-2961)GAC>AAC	p.D987N	SYNGAP1_uc010juy.2_Missense_Mutation_p.D958N|SYNGAP1_uc010juz.2_Missense_Mutation_p.D699N	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	987					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						CAAGAGTGAGGACCTCTCTTC	0.502												
ANKS1A	23294	broad.mit.edu	37	6	34937796	34937796	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:34937796C>T	uc003ojx.3	+	3	430	c.288C>T	c.(286-288)GTC>GTT	p.V96V	ANKS1A_uc011dss.1_Silent_p.V96V|ANKS1A_uc011dst.1_5'UTR|ANKS1A_uc010jvp.1_5'UTR|ANKS1A_uc010jvq.1_RNA|ANKS1A_uc010jvr.1_5'Flank	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	96	ANK 1.					cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						GGGATGTGGTCGAGGTTCTTC	0.488												
SRPK1	6732	broad.mit.edu	37	6	35854499	35854499	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:35854499A>G	uc003olj.2	-	6	601	c.478_splice	c.e6+1	p.H160_splice	SRPK1_uc011dtg.1_Splice_Site_p.H144_splice|SRPK1_uc003olh.2_Splice_Site_p.H53_splice|SRPK1_uc003oli.2_Splice_Site_p.H53_splice	NM_003137	NP_003128	Q96SB4	SRPK1_HUMAN	SFRS protein kinase 1						cell differentiation|chromosome segregation|interspecies interaction between organisms|intracellular protein kinase cascade|mRNA processing|negative regulation of viral genome replication|positive regulation of viral genome replication|regulation of mRNA processing|RNA splicing	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						TTAAAAGGATACGTGTTCCAT	0.368												
SLC26A8	116369	broad.mit.edu	37	6	35919034	35919034	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:35919034A>T	uc003olm.2	-	19	2489	c.2378T>A	c.(2377-2379)CTG>CAG	p.L793Q	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.L375Q|SLC26A8_uc003oln.2_Missense_Mutation_p.L793Q|SLC26A8_uc003oll.2_Missense_Mutation_p.L688Q	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	793	Interaction with RACGAP1.|STAS.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						CAAGGCAAACAGCACGGCGTC	0.488												
SLC26A8	116369	broad.mit.edu	37	6	35930388	35930388	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:35930388G>A	uc003olm.2	-	12	1487	c.1376C>T	c.(1375-1377)GCT>GTT	p.A459V	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.A41V|SLC26A8_uc003oln.2_Missense_Mutation_p.A459V|SLC26A8_uc003oll.2_Missense_Mutation_p.A354V	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	459	Helical; (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						AATAATACCAGCCAGCACAGC	0.458												
PNPLA1	285848	broad.mit.edu	37	6	36274133	36274133	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:36274133C>T	uc010jwf.2	+	7	1449	c.1449C>T	c.(1447-1449)ACC>ACT	p.T483T	PNPLA1_uc003olw.1_Silent_p.T388T|PNPLA1_uc010jwe.1_Silent_p.T397T	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	483					lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						TGAAGGAAACCGTCAGCAAGC	0.483												
FGD2	221472	broad.mit.edu	37	6	36993651	36993651	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:36993651C>T	uc010jwp.1	+	14	1713	c.1542C>T	c.(1540-1542)TAC>TAT	p.Y514Y	FGD2_uc003ong.2_Silent_p.Y236Y|FGD2_uc011dtv.1_Silent_p.Y142Y|FGD2_uc003onj.1_Silent_p.Y91Y	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	514	FYVE-type.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						TCCACTGCTACGCATTCCTCA	0.612												
TBC1D22B	55633	broad.mit.edu	37	6	37298880	37298880	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:37298880C>T	uc003onn.2	+	13	1596	c.1450C>T	c.(1450-1452)CTG>TTG	p.L484L	TBC1D22B_uc010jwt.2_RNA|TBC1D22B_uc003onp.2_Silent_p.L142L	NM_017772	NP_060242	Q9NU19	TB22B_HUMAN	TBC1 domain family, member 22B	484						intracellular	Rab GTPase activator activity				0			OV - Ovarian serous cystadenocarcinoma(102;0.241)			AGAAATTGGGCTGCTTCTCGC	0.517												
DNAH8	1769	broad.mit.edu	37	6	38723785	38723785	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:38723785C>T	uc003ooe.1	+	8	1394	c.794C>T	c.(793-795)GCC>GTC	p.A265V		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTGATTAATGCCATCAGAATG	0.328												
DNAH8	1769	broad.mit.edu	37	6	38843564	38843564	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:38843564C>A	uc003ooe.1	+	51	7767	c.7167C>A	c.(7165-7167)GGC>GGA	p.G2389G		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TACCTAAAGGCTCAAATCAAA	0.368												
DNAH8	1769	broad.mit.edu	37	6	38919215	38919215	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:38919215C>T	uc003ooe.1	+	80	12319	c.11719C>T	c.(11719-11721)CGG>TGG	p.R3907W	DNAH8_uc003oog.1_Missense_Mutation_p.R356W|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAGTGATACCCGGACACCTCT	0.413												
DNAH8	1769	broad.mit.edu	37	6	38998045	38998045	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:38998045T>C	uc003ooe.1	+	91	13950	c.13350T>C	c.(13348-13350)TGT>TGC	p.C4450C		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGTATGTGTGTCCTATTTACA	0.502												
KCNK17	89822	broad.mit.edu	37	6	39267322	39267322	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:39267322G>A	uc003ooo.2	-	5	1020	c.880C>T	c.(880-882)CCT>TCT	p.P294S	KCNK17_uc003oop.2_3'UTR	NM_031460	NP_113648	Q96T54	KCNKH_HUMAN	potassium channel, subfamily K, member 17	294	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2						TCCCGGTCAGGTCCCTGTCTC	0.577												
MED20	9477	broad.mit.edu	37	6	41875024	41875024	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:41875024A>G	uc003ork.2	-	4	546	c.425T>C	c.(424-426)GTG>GCG	p.V142A	MED20_uc003orj.2_Missense_Mutation_p.V77A|MED20_uc011duh.1_Missense_Mutation_p.W117R|MED20_uc011dui.1_RNA|MED20_uc011duj.1_Missense_Mutation_p.V77A	NM_004275	NP_004266	Q9H944	MED20_HUMAN	Trf (TATA binding protein-related	142					regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	mediator complex	DNA-directed RNA polymerase activity|protein binding				0	Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000367)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GCCATACTCCACCTGGGAACC	0.562												
UBR2	23304	broad.mit.edu	37	6	42620271	42620271	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:42620271C>G	uc011dur.1	+	25	2657	c.2657C>G	c.(2656-2658)GCA>GGA	p.A886G	UBR2_uc011dus.1_Missense_Mutation_p.A531G|UBR2_uc003osh.2_RNA	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	886					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			CCTCTGTTTGCAAGCCTGGTT	0.433												
UBR2	23304	broad.mit.edu	37	6	42650804	42650804	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:42650804A>G	uc011dur.1	+	43	4730	c.4730A>G	c.(4729-4731)AAC>AGC	p.N1577S	UBR2_uc011dus.1_Missense_Mutation_p.N1222S|UBR2_uc003osh.2_RNA|UBR2_uc011dut.1_Missense_Mutation_p.N165S	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	1577					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			TGGTGCCGTAACAGTGAAGTT	0.373												
MRPL2	51069	broad.mit.edu	37	6	43023745	43023745	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:43023745A>G	uc003ots.1	-	5	644	c.521T>C	c.(520-522)GTT>GCT	p.V174A	CUL7_uc011dvb.1_5'Flank|CUL7_uc003otq.2_5'Flank|CUL7_uc010jyh.2_5'Flank|KLC4_uc003otr.1_Intron|MRPL2_uc011dvc.1_Silent_p.S198S	NM_015950	NP_057034	Q5T653	RM02_HUMAN	mitochondrial ribosomal protein L2 precursor	174					translation	mitochondrion|ribosome	structural constituent of ribosome				0		Ovarian(999;0.0014)	Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00708)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)	BRCA - Breast invasive adenocarcinoma(397;0.0026)		CCGAGCAGCAACTAAAAGACA	0.542												
MRPL2	51069	broad.mit.edu	37	6	43025842	43025842	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:43025842G>A	uc003ots.1	-	2	349	c.226C>T	c.(226-228)CCA>TCA	p.P76S	KLC4_uc003otr.1_Intron|MRPL2_uc011dvc.1_Missense_Mutation_p.P76S|MRPL2_uc010jyi.2_3'UTR|MRPL2_uc003ott.3_Missense_Mutation_p.P76S|KLC4_uc011dvd.1_5'Flank|KLC4_uc003otu.2_5'Flank|KLC4_uc003otv.1_5'Flank|KLC4_uc003otw.1_5'Flank|KLC4_uc003otx.1_5'Flank|KLC4_uc003oty.1_5'Flank|KLC4_uc003otz.1_5'Flank	NM_015950	NP_057034	Q5T653	RM02_HUMAN	mitochondrial ribosomal protein L2 precursor	76					translation	mitochondrion|ribosome	structural constituent of ribosome				0		Ovarian(999;0.0014)	Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00708)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)	BRCA - Breast invasive adenocarcinoma(397;0.0026)		ATCTTCACTGGTGTAATGGTG	0.507												
TTBK1	84630	broad.mit.edu	37	6	43226884	43226884	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:43226884C>T	uc003ouq.1	+	11	1404	c.1125C>T	c.(1123-1125)CCC>CCT	p.P375P		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	375						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			CAATTCTGCCCGGGAGGCCCT	0.647												
ZNF318	24149	broad.mit.edu	37	6	43306959	43306959	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:43306959C>T	uc003oux.2	-	10	4855	c.4777G>A	c.(4777-4779)GGT>AGT	p.G1593S	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1593					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			AATGGACCACCACTTAGCTTA	0.493												
ZNF318	24149	broad.mit.edu	37	6	43308192	43308192	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:43308192G>A	uc003oux.2	-	10	3622	c.3544C>T	c.(3544-3546)CGC>TGC	p.R1182C	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1182					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CCAGCTTGGCGGTCCAGATTC	0.443												
TMEM63B	55362	broad.mit.edu	37	6	44116270	44116270	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:44116270T>C	uc003owr.2	+	14	1206	c.1142T>C	c.(1141-1143)GTG>GCG	p.V381A	TMEM63B_uc003owq.1_Missense_Mutation_p.V381A|TMEM63B_uc003ows.2_Missense_Mutation_p.V284A|TMEM63B_uc010jyz.2_RNA	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	381						integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			GACTTCAACGTGTGTAAATGC	0.612												
TCTE1	202500	broad.mit.edu	37	6	44250298	44250298	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:44250298T>C	uc003oxi.2	-	4	1003	c.847_splice	c.e4-1	p.I283_splice	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1											ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CTTGAAGATCTGTGGGCAGGC	0.552												
TCTE1	202500	broad.mit.edu	37	6	44253990	44253990	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:44253990T>A	uc003oxi.2	-	3	713	c.557A>T	c.(556-558)AAT>ATT	p.N186I	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	186										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GCGCACGTAATTCCGGCAGAG	0.652												
GPR116	221395	broad.mit.edu	37	6	46826170	46826170	+	Missense_Mutation	SNP	G	G	A	rs141322343	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:46826170G>A	uc003oyo.3	-	17	3759	c.3470C>T	c.(3469-3471)ACG>ATG	p.T1157M	GPR116_uc011dwj.1_Missense_Mutation_p.T712M|GPR116_uc011dwk.1_Missense_Mutation_p.T586M|GPR116_uc003oyp.3_Missense_Mutation_p.T1015M|GPR116_uc003oyq.3_Missense_Mutation_p.T1157M|GPR116_uc010jzi.1_Missense_Mutation_p.T829M	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1157	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			ATTCTTCCTCGTATAGACTTC	0.557												
GPR115	221393	broad.mit.edu	37	6	47682298	47682298	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:47682298T>C	uc003oza.1	+	6	1575	c.1317T>C	c.(1315-1317)CGT>CGC	p.R439R	GPR115_uc003oyz.1_Silent_p.R496R|GPR115_uc003ozb.1_Silent_p.R437R	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	439	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						CATACATGCGTCACGTGTGCA	0.483												
RHAG	6005	broad.mit.edu	37	6	49574880	49574880	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:49574880A>G	uc003ozk.3	-	8	1183	c.1121T>C	c.(1120-1122)GTT>GCT	p.V374A	RHAG_uc010jzl.2_Missense_Mutation_p.V374A|RHAG_uc010jzm.2_Silent_p.C333C	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	374	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					CAGACCTCCAACAACTGCTGT	0.423												
PGK2	5232	broad.mit.edu	37	6	49753787	49753787	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:49753787C>T	uc003ozu.2	-	1	1221	c.1114G>A	c.(1114-1116)GGG>AGG	p.G372R		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	372					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					TCTCCACCCCCTATAACAGTG	0.502												
TFAP2D	83741	broad.mit.edu	37	6	50681777	50681777	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:50681777T>C	uc003paf.2	+	1	521	c.9T>C	c.(7-9)ACT>ACC	p.T3T	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	3							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					ACATGTCAACTACCTTTCCGG	0.333												
C6orf142	90523	broad.mit.edu	37	6	54025582	54025582	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:54025582T>C	uc003pcg.3	+	7	992	c.879T>C	c.(877-879)GGT>GGC	p.G293G	C6orf142_uc003pcf.2_Silent_p.G817G|C6orf142_uc003pch.3_Intron|C6orf142_uc011dxa.1_Silent_p.G828G	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	293						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					CATTGTTGGGTTCTGACACAG	0.199												
FAM83B	222584	broad.mit.edu	37	6	54805207	54805207	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:54805207C>T	uc003pck.2	+	5	1554	c.1438C>T	c.(1438-1440)CGA>TGA	p.R480*		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	480										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TTTGCAACAACGAATGCCAAC	0.413												
FAM83B	222584	broad.mit.edu	37	6	54806569	54806569	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:54806569T>C	uc003pck.2	+	5	2916	c.2800T>C	c.(2800-2802)TAC>CAC	p.Y934H		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	934										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TCGGCGTGTTTACAGTCGTTT	0.438												
GFRAL	389400	broad.mit.edu	37	6	55264054	55264054	+	Silent	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:55264054A>T	uc003pcm.1	+	7	1115	c.1029A>T	c.(1027-1029)GGA>GGT	p.G343G		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	343	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CTTTAACTGGATTTCATTCCC	0.289												
HMGCLL1	54511	broad.mit.edu	37	6	55441964	55441964	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:55441964G>A	uc003pcn.2	-	2	269	c.110C>T	c.(109-111)ACT>ATT	p.T37I	HMGCLL1_uc003pco.2_Intron|HMGCLL1_uc010jzx.2_Intron|HMGCLL1_uc011dxc.1_Intron|HMGCLL1_uc011dxd.1_Intron|HMGCLL1_uc011dxe.1_Intron|HMGCLL1_uc003pcp.2_Intron	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	37							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			tagaagagaagtctaggaaga	0.04												
BMP5	653	broad.mit.edu	37	6	55684535	55684535	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:55684535A>G	uc003pcq.2	-	2	1313	c.601T>C	c.(601-603)TAC>CAC	p.Y201H	BMP5_uc011dxf.1_Missense_Mutation_p.Y201H	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	201					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			CGGTCCTTGTATATCCGGAAT	0.358												
DST	667	broad.mit.edu	37	6	56510686	56510686	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:56510686C>T	uc003pdf.2	-	14	1685	c.1657G>A	c.(1657-1659)GCC>ACC	p.A553T	DST_uc003pcz.3_Missense_Mutation_p.A375T|DST_uc011dxj.1_Missense_Mutation_p.A404T|DST_uc011dxk.1_Missense_Mutation_p.A415T|DST_uc011dxl.1_Missense_Mutation_p.A404T|DST_uc003pcy.3_5'Flank|DST_uc003pdb.2_5'Flank|DST_uc003pdc.3_5'Flank|DST_uc003pdd.3_5'Flank|DST_uc003pde.2_Missense_Mutation_p.A491T	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	375					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			GGACGAAGGGCCTTCTCTCTC	0.438												
PRIM2	5558	broad.mit.edu	37	6	57512649	57512649	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:57512649T>C	uc003pdx.2	+	15	1564	c.1477T>C	c.(1477-1479)TCT>CCT	p.S493P		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	493					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		TTTAAATTCCTCTCTGGAAAT	0.398												
KHDRBS2	202559	broad.mit.edu	37	6	62688109	62688109	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:62688109T>C	uc003peg.2	-	4	592	c.345A>G	c.(343-345)GAA>GAG	p.E115E		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	115	KH.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		TCTTCCTTAGTTCTTCTTCCT	0.348												
PHF3	23469	broad.mit.edu	37	6	64408425	64408425	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:64408425G>A	uc003pep.1	+	7	2938	c.2912G>A	c.(2911-2913)CGG>CAG	p.R971Q	PHF3_uc010kah.1_Missense_Mutation_p.R785Q|PHF3_uc003pen.2_Missense_Mutation_p.R883Q|PHF3_uc011dxs.1_Missense_Mutation_p.R240Q	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	971	TFIIS central.				multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			TCTTTTTTTCGGGACACAGAT	0.308												
LMBRD1	55788	broad.mit.edu	37	6	70490403	70490403	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:70490403A>G	uc003pfa.2	-	3	405	c.290T>C	c.(289-291)GTA>GCA	p.V97A	LMBRD1_uc003pez.2_Missense_Mutation_p.V24A|LMBRD1_uc010kal.2_Missense_Mutation_p.V24A|LMBRD1_uc003pfb.2_RNA	NM_018368	NP_060838	Q9NUN5	LMBD1_HUMAN	liver regeneration p-53 related protein	97	Extracellular (Potential).				interspecies interaction between organisms|transport	integral to membrane|lysosomal membrane	cobalamin binding			ovary(1)	1						ACCGTATAATACAGTGTCCTC	0.289												
COL19A1	1310	broad.mit.edu	37	6	70831829	70831829	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:70831829A>G	uc003pfc.1	+	17	1453	c.1336A>G	c.(1336-1338)AAC>GAC	p.N446D	COL19A1_uc010kam.1_Missense_Mutation_p.N342D	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	446					cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						TAACAAGGATAACAAGGTATG	0.279												
COL19A1	1310	broad.mit.edu	37	6	70909413	70909413	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:70909413G>A	uc003pfc.1	+	49	3313	c.3196G>A	c.(3196-3198)GGG>AGG	p.G1066R		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	1066	Triple-helical region 6 (COL6).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						TGGGTTGCCTGGGCCACCAGG	0.488												
COL9A1	1297	broad.mit.edu	37	6	70984464	70984464	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:70984464T>C	uc003pfg.3	-	11	1146	c.987A>G	c.(985-987)GGA>GGG	p.G329G	COL9A1_uc003pfe.3_5'UTR|COL9A1_uc003pff.3_Silent_p.G86G	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	329	Triple-helical region (COL3).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						ATCCATCAGGTCCTGTTAATC	0.348												
RIMS1	22999	broad.mit.edu	37	6	72806716	72806716	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:72806716C>T	uc003pga.2	+	3	387	c.310C>T	c.(310-312)CGT>TGT	p.R104C		NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	104	RabBD.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				AGAAGCGCGGCGTTACCAGGG	0.448												
EEF1A1	1915	broad.mit.edu	37	6	74227952	74227952	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:74227952G>A	uc003phi.2	-	6	1102	c.1065C>T	c.(1063-1065)GCC>GCT	p.A355A	EEF1A1_uc003phd.2_Silent_p.A80A|EEF1A1_uc003phe.2_Silent_p.A345A|EEF1A1_uc003phf.2_Silent_p.A348A|EEF1A1_uc003phg.2_Intron|EEF1A1_uc003phh.2_Silent_p.A201A|EEF1A1_uc003phj.2_Silent_p.A355A|EEF1A1_uc003phk.2_Silent_p.A355A|EEF1A1_uc003phl.2_Intron|EEF1A1_uc003phm.1_Intron	NM_001402	NP_001393	P68104	EF1A1_HUMAN	eukaryotic translation elongation factor 1 alpha	355						cytosol|eukaryotic translation elongation factor 1 complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0						GGGCATAGCCGGCGCTTATTT	0.448												
SLC17A5	26503	broad.mit.edu	37	6	74348179	74348179	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:74348179G>A	uc003phn.3	-	4	697	c.569C>T	c.(568-570)GCT>GTT	p.A190V	SLC17A5_uc010kax.2_5'Flank|SLC17A5_uc010kay.2_RNA|SLC17A5_uc011dyo.1_Intron	NM_012434	NP_036566	Q9NRA2	S17A5_HUMAN	sialin	190					anion transport	integral to plasma membrane|lysosomal membrane|membrane fraction	sialic acid:hydrogen symporter activity			skin(5)|central_nervous_system(1)	6						AAGAGGGGGAGCCCAAGAAGA	0.373												
CD109	135228	broad.mit.edu	37	6	74512960	74512960	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:74512960C>T	uc003php.2	+	24	3321	c.2896C>T	c.(2896-2898)CTC>TTC	p.L966F	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Missense_Mutation_p.L966F|CD109_uc010kba.2_Missense_Mutation_p.L889F	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	966						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						GAGAGAACTTCTCTATCAGAG	0.383												
CD109	135228	broad.mit.edu	37	6	74516797	74516797	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:74516797T>C	uc003php.2	+	25	3614	c.3189_splice	c.e25+2	p.Q1063_splice	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Splice_Site_p.Q1063_splice|CD109_uc010kba.2_Splice_Site_p.Q986_splice	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor							anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						AAGTATCAGGTATTTCGTATT	0.353												
COL12A1	1303	broad.mit.edu	37	6	75848672	75848672	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:75848672C>T	uc003phs.2	-	28	5129	c.4963G>A	c.(4963-4965)GTG>ATG	p.V1655M	COL12A1_uc003pht.2_Missense_Mutation_p.V491M	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1655	Fibronectin type-III 12.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						GGGGCTGGCACGGGTCCTATC	0.388												
COL12A1	1303	broad.mit.edu	37	6	75875301	75875301	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:75875301T>C	uc003phs.2	-	14	3071	c.2905A>G	c.(2905-2907)ACC>GCC	p.T969A	COL12A1_uc003pht.2_Intron	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	969	Fibronectin type-III 6.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CTGTATTTGGTCTCTGGCTGC	0.413												
IRAK1BP1	134728	broad.mit.edu	37	6	79577355	79577355	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:79577355G>A	uc003pim.2	+	1	167	c.62G>A	c.(61-63)CGG>CAG	p.R21Q	IRAK1BP1_uc010kbg.1_RNA	NM_001010844	NP_001010844	Q5VVH5	IKBP1_HUMAN	interleukin-1 receptor-associated kinase 1	21	Intrinsically disordered.				I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus					0		all_cancers(76;0.0398)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)		BRCA - Breast invasive adenocarcinoma(397;0.21)		TGGGCTGACCGGAGCCGGGAG	0.607												
PHIP	55023	broad.mit.edu	37	6	79724917	79724917	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:79724917A>G	uc003pir.2	-	15	1632	c.1406T>C	c.(1405-1407)GTA>GCA	p.V469A	PHIP_uc011dyp.1_Missense_Mutation_p.V469A	NM_017934	NP_060404	Q8WWQ0	PHIP_HUMAN	pleckstrin homology domain interacting protein	469	WD 7.		V -> I (in a colorectal cancer sample; somatic mutation).		insulin receptor signaling pathway|negative regulation of apoptosis|positive regulation of cell proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis	nucleus	insulin receptor binding	p.V469I(1)		large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	6		all_cancers(76;0.00125)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.219)		BRCA - Breast invasive adenocarcinoma(397;0.231)		AAGAACAAATACCTCATCTTC	0.358												
TTK	7272	broad.mit.edu	37	6	80749999	80749999	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:80749999T>C	uc003pjc.2	+	20	2466	c.2392_splice	c.e20+2	p.V798_splice	TTK_uc003pjb.3_Splice_Site_p.V797_splice	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase						mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		CTCATCCAGGTACTACTTCTT	0.328												
DOPEY1	23033	broad.mit.edu	37	6	83819867	83819867	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:83819867T>C	uc003pjs.1	+	6	775	c.515T>C	c.(514-516)GTT>GCT	p.V172A	DOPEY1_uc011dyy.1_Missense_Mutation_p.V172A|DOPEY1_uc010kbl.1_Missense_Mutation_p.V172A	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	172					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		TTGGAAAAGGTTGCTGCTGCT	0.393												
PGM3	5238	broad.mit.edu	37	6	83891476	83891476	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:83891476T>C	uc003pjv.2	-	6	806	c.766A>G	c.(766-768)AGT>GGT	p.S256G	PGM3_uc003pjw.2_Missense_Mutation_p.S175G|PGM3_uc011dyz.1_Missense_Mutation_p.S284G	NM_015599	NP_056414	O95394	AGM1_HUMAN	phosphoglucomutase 3	256					dolichol-linked oligosaccharide biosynthetic process|embryo development ending in birth or egg hatching|glucose 1-phosphate metabolic process|hemopoiesis|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	magnesium ion binding|phosphoacetylglucosamine mutase activity|phosphoglucomutase activity				0		all_cancers(76;0.000504)|Acute lymphoblastic leukemia(125;3.85e-06)|all_hematologic(105;0.0017)|all_epithelial(107;0.068)		BRCA - Breast invasive adenocarcinoma(397;0.0478)		TTCTGATGACTTTTCACAAAG	0.408												
ME1	4199	broad.mit.edu	37	6	83933648	83933648	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:83933648C>T	uc003pjy.2	-	12	1386	c.1280G>A	c.(1279-1281)CGT>CAT	p.R427H	ME1_uc011dzb.1_Missense_Mutation_p.R352H|ME1_uc011dzc.1_Missense_Mutation_p.R261H	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	427					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	AAAAATTGCACGTCCCTACAA	0.398												
PRSS35	167681	broad.mit.edu	37	6	84234379	84234379	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:84234379G>A	uc003pjz.2	+	2	1382	c.1219G>A	c.(1219-1221)GAT>AAT	p.D407N	PRSS35_uc010kbm.2_Missense_Mutation_p.D407N	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	407	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		TCACGGGAACGATGCCAATTG	0.502												
SNX14	57231	broad.mit.edu	37	6	86281916	86281916	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:86281916T>C	uc003pkr.2	-	4	549	c.356A>G	c.(355-357)GAA>GGA	p.E119G	SNX14_uc003pkq.2_5'UTR|SNX14_uc011dzg.1_Missense_Mutation_p.E67G|SNX14_uc003pks.2_Missense_Mutation_p.E119G|SNX14_uc003pkt.2_Missense_Mutation_p.E119G	NM_153816	NP_722523	Q9Y5W7	SNX14_HUMAN	sorting nexin 14 isoform a	119					cell communication|protein transport	integral to membrane	phosphatidylinositol binding|signal transducer activity				0		all_cancers(76;4.83e-07)|Acute lymphoblastic leukemia(125;3.3e-08)|Prostate(29;2.55e-07)|all_hematologic(105;3.66e-05)|all_epithelial(107;0.000695)|Lung NSC(302;0.197)|all_lung(197;0.24)		BRCA - Breast invasive adenocarcinoma(108;0.0423)		CTGGTAGTTTTCAAGTAGCAA	0.294												
ZNF292	23036	broad.mit.edu	37	6	87969203	87969203	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:87969203T>A	uc003plm.3	+	8	5897	c.5856T>A	c.(5854-5856)CCT>CCA	p.P1952P		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	1952	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		GTGTAGTACCTACATGTACAA	0.303												
SLC35A1	10559	broad.mit.edu	37	6	88210879	88210879	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:88210879A>G	uc011dzj.1	+	4	437	c.358A>G	c.(358-360)ACC>GCC	p.T120A	SLC35A1_uc003plx.2_RNA|SLC35A1_uc010kbw.2_5'UTR|SLC35A1_uc003plz.2_RNA|SLC35A1_uc011dzi.1_5'UTR|SLC35A1_uc003ply.2_RNA|SLC35A1_uc010kbx.2_Missense_Mutation_p.T120A|SLC35A1_uc010kby.2_RNA	NM_006416	NP_006407	P78382	S35A1_HUMAN	solute carrier family 35 (CMP-sialic acid	120	Helical; (Potential).				carbohydrate metabolic process|protein modification process	Golgi membrane|integral to plasma membrane	CMP-N-acetylneuraminate transmembrane transporter activity|sugar:hydrogen symporter activity				0		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		TTTTTAGGTGACCTACCAGTT	0.303												
CNR1	1268	broad.mit.edu	37	6	88853864	88853864	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:88853864G>A	uc011dzq.1	-	2	4693	c.1130C>T	c.(1129-1131)ACG>ATG	p.T377M	CNR1_uc010kbz.2_Missense_Mutation_p.T377M|CNR1_uc011dzr.1_Missense_Mutation_p.T377M|CNR1_uc011dzs.1_Missense_Mutation_p.T377M|CNR1_uc003pmq.3_Missense_Mutation_p.T377M|CNR1_uc011dzt.1_Missense_Mutation_p.T377M|CNR1_uc010kca.2_Missense_Mutation_p.T344M	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	377	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	TGCAAACACCGTCTTAATGAG	0.522												
PNRC1	10957	broad.mit.edu	37	6	89790771	89790771	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:89790771C>A	uc003pmv.2	+	1	343	c.158C>A	c.(157-159)CCG>CAG	p.P53Q	PNRC1_uc003pmu.2_Missense_Mutation_p.P53Q|PNRC1_uc003pmx.2_5'Flank	NM_006813	NP_006804	Q12796	PNRC1_HUMAN	proline-rich nuclear receptor coactivator 1	53					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding				0		all_cancers(76;3.64e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.102)		GCACTGCCCCCGACCCTCTTC	0.692										Multiple Myeloma(7;0.094)		
BACH2	60468	broad.mit.edu	37	6	90661192	90661192	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:90661192G>A	uc011eab.1	-	7	1442	c.633C>T	c.(631-633)GAC>GAT	p.D211D	BACH2_uc003pnw.2_Silent_p.D211D|BACH2_uc010kch.2_Silent_p.D211D	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	211						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		CTGTGGGCACGTCAGGCTCGG	0.557												
BACH2	60468	broad.mit.edu	37	6	90661316	90661316	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:90661316G>A	uc011eab.1	-	7	1318	c.509C>T	c.(508-510)ACG>ATG	p.T170M	BACH2_uc003pnw.2_Missense_Mutation_p.T170M|BACH2_uc010kch.2_Missense_Mutation_p.T170M	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	170						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		TGAATCCATCGTCTCCTCCTC	0.607												
KIAA0776	23376	broad.mit.edu	37	6	96974251	96974251	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:96974251T>C	uc003por.2	+	5	453	c.405T>C	c.(403-405)GGT>GGC	p.G135G	KIAA0776_uc010kck.2_RNA	NM_015323	NP_056138	O94874	UFL1_HUMAN	hypothetical protein LOC23376	135	Required for E3 UFM1-protein ligase activity.|Involved in CDK5RAP3-binding.				negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|protein ufmylation	endoplasmic reticulum|nucleus	protein binding|UFM1 conjugating enzyme activity			ovary(1)	1		all_cancers(76;5.83e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0604)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0934)		AAGAAAGTGGTCAGGTCACCA	0.323												
KLHL32	114792	broad.mit.edu	37	6	97562108	97562108	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:97562108T>C	uc010kcm.1	+	7	1549	c.1077T>C	c.(1075-1077)AGT>AGC	p.S359S	KLHL32_uc003poy.2_Silent_p.S359S|KLHL32_uc011ead.1_Silent_p.S323S|KLHL32_uc003poz.2_Intron|KLHL32_uc011eae.1_Silent_p.S290S|KLHL32_uc003ppa.2_Intron	NM_052904	NP_443136	Q96NJ5	KLH32_HUMAN	kelch-like 32	359	Kelch 2.									ovary(3)|skin(1)	4		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		AGCATGCCAGTGGCCGGACGT	0.587												
C6orf167	253714	broad.mit.edu	37	6	97679388	97679388	+	Nonsense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:97679388A>T	uc003ppb.2	-	13	1709	c.1443T>A	c.(1441-1443)TAT>TAA	p.Y481*	C6orf167_uc011eaf.1_Nonsense_Mutation_p.Y441*|C6orf167_uc010kcn.1_Nonsense_Mutation_p.Y255*	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	481					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		GAAAAATAGTATAACTACTGC	0.368												
C6orf167	253714	broad.mit.edu	37	6	97715821	97715821	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:97715821A>T	uc003ppb.2	-	8	1021	c.755T>A	c.(754-756)ATC>AAC	p.I252N	C6orf167_uc011eaf.1_Missense_Mutation_p.I252N|C6orf167_uc010kcn.1_Missense_Mutation_p.I26N|C6orf167_uc010kco.1_Missense_Mutation_p.I26N|C6orf167_uc003ppc.2_Missense_Mutation_p.I252N	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	252					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		AAATAGGCTGATGTTGGTTAA	0.308												
FBXL4	26235	broad.mit.edu	37	6	99328484	99328484	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:99328484C>T	uc003ppf.1	-	7	1692	c.1334G>A	c.(1333-1335)AGC>AAC	p.S445N	FBXL4_uc003ppg.1_Missense_Mutation_p.S445N|FBXL4_uc003pph.1_Missense_Mutation_p.S47N|FBXL4_uc010kcp.2_Intron	NM_012160	NP_036292	Q9UKA2	FBXL4_HUMAN	F-box and leucine-rich repeat protein 4	445	LRR 3.				ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex				skin(2)	2		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0413)		GTTCAAAATGCTGAGCAGTGC	0.393												
COQ3	51805	broad.mit.edu	37	6	99828203	99828203	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:99828203C>T	uc003ppk.2	-	3	275	c.248G>A	c.(247-249)AGA>AAA	p.R83K		NM_017421	NP_059117	Q9NZJ6	COQ3_HUMAN	hexaprenyldihydroxybenzoate methyltransferase	83					glycerol metabolic process|ubiquinone biosynthetic process	mitochondrial matrix	2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity|3-demethylubiquinone-9 3-O-methyltransferase activity|hexaprenyldihydroxybenzoate methyltransferase activity			upper_aerodigestive_tract(1)	1		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0625)		ACTGTACAGTCTCGCCCAAGG	0.423												
SFRS18	25957	broad.mit.edu	37	6	99860536	99860536	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:99860536T>C	uc003ppo.3	-	4	396	c.168A>G	c.(166-168)CAA>CAG	p.Q56Q	SFRS18_uc003ppp.3_Silent_p.Q56Q|SFRS18_uc011eag.1_Silent_p.Q56Q|SFRS18_uc003ppr.2_Silent_p.Q56Q|SFRS18_uc003ppt.2_Silent_p.Q56Q|SFRS18_uc003pps.2_Silent_p.Q56Q	NM_032870	NP_116259	Q8TF01	PNISR_HUMAN	splicing factor, arginine/serine-rich 130	56	Gln-rich.					nuclear speck					0		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0631)		TTCCTGGTGGTTGTTCTACCA	0.438												
PRDM13	59336	broad.mit.edu	37	6	100062346	100062346	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:100062346A>G	uc003pqg.1	+	4	2096	c.1835A>G	c.(1834-1836)GAC>GGC	p.D612G		NM_021620	NP_067633	Q9H4Q3	PRD13_HUMAN	PR domain containing 13	612	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(76;1.64e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0128)|Colorectal(196;0.069)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0598)		CCCTTCGGCGACCCCAGCAAT	0.622												
ASCC3	10973	broad.mit.edu	37	6	101054919	101054919	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:101054919T>C	uc003pqk.2	-	31	5160	c.4831A>G	c.(4831-4833)ACC>GCC	p.T1611A		NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	1611	Helicase C-terminal 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		AAAGCAAGGGTCAGCTTGAGG	0.368												
ASCC3	10973	broad.mit.edu	37	6	101296426	101296426	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:101296426A>G	uc003pqk.2	-	4	728	c.399T>C	c.(397-399)GCT>GCC	p.A133A	ASCC3_uc011eai.1_Silent_p.A35A|ASCC3_uc003pql.2_Silent_p.A133A|ASCC3_uc010kcv.2_Silent_p.A133A	NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	133					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		TTCGATTAGTAGCATTACAAG	0.383												
PREP	5550	broad.mit.edu	37	6	105781311	105781311	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:105781311G>A	uc003prc.2	-	8	1096	c.893C>T	c.(892-894)ACG>ATG	p.T298M		NM_002726	NP_002717	P48147	PPCE_HUMAN	prolyl endopeptidase	298				T -> A (in Ref. 2; BAA04661).	proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	TGTGAACACCGTCCCCTCATT	0.458												
RTN4IP1	84816	broad.mit.edu	37	6	107050772	107050772	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:107050772C>T	uc003prj.2	-	5	1123	c.646G>A	c.(646-648)GGA>AGA	p.G216R	RTN4IP1_uc010kdd.2_Intron|RTN4IP1_uc003prk.2_Missense_Mutation_p.G116R	NM_032730	NP_116119	Q8WWV3	RT4I1_HUMAN	reticulon 4 interacting protein 1 precursor	216						mitochondrion	oxidoreductase activity|zinc ion binding				0	Breast(9;0.0107)|all_epithelial(6;0.14)	all_cancers(87;9.45e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.0144)	Epithelial(6;0.000873)|all cancers(7;0.00363)|BRCA - Breast invasive adenocarcinoma(8;0.00721)|OV - Ovarian serous cystadenocarcinoma(5;0.0394)	all cancers(137;0.113)|BRCA - Breast invasive adenocarcinoma(108;0.127)|Epithelial(106;0.144)		GTACCAACTCCGCCTGAAGCG	0.294												
BEND3	57673	broad.mit.edu	37	6	107391162	107391162	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:107391162G>A	uc003prs.2	-	5	1883	c.1233C>T	c.(1231-1233)GCC>GCT	p.A411A		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	411	BEN 2.									ovary(3)	3						GGAGGAAGACGGCAAACTCGC	0.622												
BEND3	57673	broad.mit.edu	37	6	107420485	107420485	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:107420485T>C	uc003prs.2	-	3	655	c.5A>G	c.(4-6)AAC>AGC	p.N2S		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	2										ovary(3)	3						TTCAGTTGAGTTCATCTTCTA	0.313												
PDSS2	57107	broad.mit.edu	37	6	107780386	107780386	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:107780386A>G	uc003prt.2	-	1	394	c.104T>C	c.(103-105)GTG>GCG	p.V35A	PDSS2_uc011eak.1_Intron|PDSS2_uc011eal.1_Missense_Mutation_p.V35A|PDSS2_uc003pru.2_Missense_Mutation_p.V35A|PDSS2_uc003prv.2_Missense_Mutation_p.V35A	NM_020381	NP_065114	Q86YH6	DLP1_HUMAN	prenyl diphosphate synthase, subunit 2	35					isoprenoid biosynthetic process|ubiquinone biosynthetic process	mitochondrion	protein heterodimerization activity			ovary(2)	2	Breast(9;0.0127)	all_cancers(87;3.63e-05)|Acute lymphoblastic leukemia(125;2.86e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.0108)|Colorectal(196;0.156)|Lung NSC(302;0.211)	BRCA - Breast invasive adenocarcinoma(8;0.0101)|all cancers(7;0.243)	BRCA - Breast invasive adenocarcinoma(108;0.112)|OV - Ovarian serous cystadenocarcinoma(136;0.173)|all cancers(137;0.191)		CCAAGAGCCCACCGAGGAGAT	0.627											OREG0017595	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
OSTM1	28962	broad.mit.edu	37	6	108385478	108385478	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:108385478G>A	uc003psd.2	-	2	514	c.428C>T	c.(427-429)GCC>GTC	p.A143V		NM_014028	NP_054747	Q86WC4	OSTM1_HUMAN	osteopetrosis associated transmembrane protein 1	143	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1		all_cancers(87;3.82e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000195)|Colorectal(196;0.0293)|all_lung(197;0.0938)		BRCA - Breast invasive adenocarcinoma(108;0.0131)|Epithelial(106;0.0438)|OV - Ovarian serous cystadenocarcinoma(136;0.0571)|all cancers(137;0.0581)		GAGACTTCTGGCACAACTCTG	0.353											OREG0003974	type=REGULATORY REGION|Gene=OSTM1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay
SESN1	27244	broad.mit.edu	37	6	109323528	109323528	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:109323528G>A	uc003pst.3	-	2	213	c.121C>T	c.(121-123)CCT>TCT	p.P41S	SESN1_uc003psu.2_Missense_Mutation_p.P100S	NM_014454	NP_055269	Q9Y6P5	SESN1_HUMAN	sestrin 1	41					cell cycle arrest|negative regulation of cell proliferation|response to DNA damage stimulus	nucleus				ovary(1)	1		all_cancers(87;6.45e-05)|Acute lymphoblastic leukemia(125;3.55e-10)|all_hematologic(75;1.68e-07)|all_epithelial(87;0.0106)|Colorectal(196;0.0637)		Epithelial(106;0.0014)|BRCA - Breast invasive adenocarcinoma(108;0.00146)|all cancers(137;0.0031)|OV - Ovarian serous cystadenocarcinoma(136;0.0117)		AGTGGTCGAGGAATTCTAATG	0.413												
MICAL1	64780	broad.mit.edu	37	6	109774467	109774467	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:109774467C>A	uc003ptj.2	-	3	824	c.570G>T	c.(568-570)AAG>AAT	p.K190N	MICAL1_uc003ptk.2_Missense_Mutation_p.K190N|MICAL1_uc010kdr.2_Missense_Mutation_p.K190N|MICAL1_uc011eaq.1_Missense_Mutation_p.K209N	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	190					cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		AATACTTACCCTTCCTAGGAG	0.522												
ZBTB24	9841	broad.mit.edu	37	6	109787303	109787303	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:109787303T>C	uc003ptl.1	-	7	2013	c.1845A>G	c.(1843-1845)GAA>GAG	p.E615E	MICAL1_uc011eaq.1_5'Flank|ZBTB24_uc011ear.1_RNA|ZBTB24_uc010kds.1_Silent_p.E559E|ZBTB24_uc010kdt.1_RNA	NM_014797	NP_055612	O43167	ZBT24_HUMAN	zinc finger and BTB domain containing 24 isoform	615					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0154)|all cancers(137;0.0216)|OV - Ovarian serous cystadenocarcinoma(136;0.0242)|BRCA - Breast invasive adenocarcinoma(108;0.059)		TCTGAATGTGTTCTGTTTGCT	0.478												
AKD1	221264	broad.mit.edu	37	6	109962765	109962765	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:109962765T>C	uc003ptn.2	-	10	966	c.889A>G	c.(889-891)AAA>GAA	p.K297E	AKD1_uc003ptr.3_Missense_Mutation_p.K297E	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	297					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						CCCTGAAGTTTGGTTAGAATA	0.303												
GPR6	2830	broad.mit.edu	37	6	110300895	110300895	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:110300895A>T	uc011eaw.1	+	2	760	c.580A>T	c.(580-582)ACC>TCC	p.T194S	GPR6_uc011eav.1_Missense_Mutation_p.T209S|GPR6_uc003ptu.2_Missense_Mutation_p.T194S	NM_005284	NP_005275	P46095	GPR6_HUMAN	G protein-coupled receptor 6	194	Helical; Name=4; (Potential).					integral to plasma membrane					0		all_cancers(87;1.64e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;2.83e-05)|all_lung(197;0.00016)|Lung NSC(302;0.000318)|Colorectal(196;0.0488)		BRCA - Breast invasive adenocarcinoma(108;8.01e-05)|Epithelial(106;8.76e-05)|all cancers(137;0.000197)|OV - Ovarian serous cystadenocarcinoma(136;0.0307)		CGCCACTTGGACCGTGTCCCT	0.692												
WASF1	8936	broad.mit.edu	37	6	110434550	110434550	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:110434550G>A	uc003ptv.1	-	5	1084	c.247C>T	c.(247-249)CTT>TTT	p.L83F	WASF1_uc003ptw.1_Missense_Mutation_p.L83F|WASF1_uc003ptx.1_Missense_Mutation_p.L83F|WASF1_uc003pty.1_Missense_Mutation_p.L83F|WASF1_uc003ptz.1_Missense_Mutation_p.L83F	NM_003931	NP_003922	Q92558	WASF1_HUMAN	Wiskott-Aldrich syndrome protein family member	83					actin filament polymerization|cellular component movement	actin cytoskeleton	actin binding				0		all_cancers(87;1.18e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		OV - Ovarian serous cystadenocarcinoma(136;0.0364)|Epithelial(106;0.051)|all cancers(137;0.0687)		TTTGGATCAAGCTGTGTAACA	0.303												
DDO	8528	broad.mit.edu	37	6	110714482	110714482	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:110714482C>T	uc003puc.2	-	5	610	c.606G>A	c.(604-606)CCG>CCA	p.P202P	C6orf186_uc003pub.2_Intron|DDO_uc003pud.2_Silent_p.P143P	NM_003649	NP_003640	Q99489	OXDD_HUMAN	D-aspartate oxidase isoform a	174					aspartate catabolic process	peroxisome	binding|D-amino-acid oxidase activity|D-aspartate oxidase activity			ovary(2)|breast(1)	3		all_cancers(87;3.47e-21)|all_epithelial(87;9.03e-20)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_lung(197;2.98e-05)|Lung NSC(302;3.25e-05)|Colorectal(196;3.46e-05)|Ovarian(999;0.00327)		all cancers(137;2.54e-48)|Epithelial(106;3.11e-44)|OV - Ovarian serous cystadenocarcinoma(136;2.08e-24)|BRCA - Breast invasive adenocarcinoma(108;0.000141)|GBM - Glioblastoma multiforme(226;0.00046)		TGTCAAAGGACGGATGAAGTT	0.502												
CDK19	23097	broad.mit.edu	37	6	110943323	110943323	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:110943323T>C	uc003puh.1	-	11	1151	c.1078A>G	c.(1078-1080)AAT>GAT	p.N360D	CDK19_uc003pui.1_Missense_Mutation_p.N300D|CDK19_uc011eax.1_Missense_Mutation_p.N236D	NM_015076	NP_055891	Q9BWU1	CDK19_HUMAN	cell division cycle 2-like 6 (CDK8-like)	360							ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						TCATCTTCATTAAGGAATTCT	0.353												
REV3L	5980	broad.mit.edu	37	6	111628643	111628643	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:111628643C>T	uc003puy.3	-	31	9496	c.9173G>A	c.(9172-9174)CGG>CAG	p.R3058Q	REV3L_uc003pux.3_Missense_Mutation_p.R2980Q|REV3L_uc003puz.3_Missense_Mutation_p.R2980Q|REV3L_uc003puw.3_Missense_Mutation_p.R125Q	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	3058					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		AGGTTGGCTCCGACATTTACT	0.463								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage				
REV3L	5980	broad.mit.edu	37	6	111650832	111650832	+	Missense_Mutation	SNP	C	C	T	rs141338934		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:111650832C>T	uc003puy.3	-	25	8467	c.8144G>A	c.(8143-8145)CGA>CAA	p.R2715Q	REV3L_uc003pux.3_Missense_Mutation_p.R2637Q|REV3L_uc003puz.3_Missense_Mutation_p.R2637Q|REV3L_uc003pva.1_RNA	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	2715					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		ATCAAGCATTCGTGACAGGGC	0.413								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage				
REV3L	5980	broad.mit.edu	37	6	111695836	111695836	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:111695836A>G	uc003puy.3	-	13	4045	c.3722T>C	c.(3721-3723)TTT>TCT	p.F1241S	REV3L_uc003pux.3_Missense_Mutation_p.F1163S|REV3L_uc003puz.3_Missense_Mutation_p.F1163S	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	1241					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		TTTCAGTACAAACTTAACCTC	0.373								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage				
FYN	2534	broad.mit.edu	37	6	112015676	112015676	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:112015676C>T	uc003pvj.2	-	11	1515	c.1175G>A	c.(1174-1176)CGA>CAA	p.R392Q	FYN_uc003pvi.2_Missense_Mutation_p.R337Q|FYN_uc003pvk.2_Missense_Mutation_p.R392Q|FYN_uc003pvh.2_Missense_Mutation_p.R389Q|FYN_uc010kdy.1_Missense_Mutation_p.R83Q	NM_002037	NP_002028	P06241	FYN_HUMAN	protein-tyrosine kinase fyn isoform a	392	Protein kinase.				axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|central_nervous_system(1)|skin(1)	7		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	GTTTGCTGATCGCAGATCTCT	0.473												
ROS1	6098	broad.mit.edu	37	6	117681045	117681045	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:117681045T>A	uc003pxp.1	-	23	3774	c.3575A>T	c.(3574-3576)GAT>GTT	p.D1192V	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1192	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CATCTCATTATCAGCTGTGTA	0.393			T	GOPC|ROS1	glioblastoma|NSCLC							
ROS1	6098	broad.mit.edu	37	6	117709040	117709040	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:117709040C>T	uc003pxp.1	-	13	2116	c.1917G>A	c.(1915-1917)CTG>CTA	p.L639L	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	639	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TAGCACTCTGCAGCTCAGGTA	0.498			T	GOPC|ROS1	glioblastoma|NSCLC							
SLC35F1	222553	broad.mit.edu	37	6	118588225	118588225	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:118588225A>G	uc003pxx.3	+	4	746	c.545A>G	c.(544-546)AAG>AGG	p.K182R	SLC35F1_uc003pxy.1_5'UTR	NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1	182					transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		ATCCGGTACAAGGCTGTGCAT	0.522												
C6orf204	387119	broad.mit.edu	37	6	118845081	118845081	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:118845081A>G	uc003pxz.1	-	4	1611	c.1023T>C	c.(1021-1023)GTT>GTC	p.V341V	C6orf204_uc003pya.1_Silent_p.V344V|C6orf204_uc003pyb.2_Silent_p.V341V|C6orf204_uc011ebj.1_Silent_p.V239V|C6orf204_uc003pyc.2_Silent_p.V344V	NM_001042475	NP_001035940	Q5SZL2	CF204_HUMAN	chromosome 6 open reading frame 204 isoform a	341						centrosome				breast(1)	1		all_cancers(87;0.0814)|all_epithelial(87;0.115)		GBM - Glioblastoma multiforme(226;0.0114)|all cancers(137;0.035)|OV - Ovarian serous cystadenocarcinoma(136;0.0618)		ATCCAGTCAAAACCTGCAGAA	0.269												
MCM9	254394	broad.mit.edu	37	6	119252713	119252713	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:119252713T>C	uc003pyh.2	-	2	439	c.176A>G	c.(175-177)AAC>AGC	p.N59S		NM_153255	NP_694987	Q9NXL9	MCM9_HUMAN	minichromosome maintenance complex component 9	59					DNA replication		ATP binding|DNA binding|nucleoside-triphosphatase activity			ovary(1)	1		all_cancers(87;0.122)|all_epithelial(87;0.179)		GBM - Glioblastoma multiforme(226;0.0676)|OV - Ovarian serous cystadenocarcinoma(136;0.194)		GGGGAACATGTTGAAATATTC	0.443												
FAM184A	79632	broad.mit.edu	37	6	119345686	119345686	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:119345686A>G	uc003pyj.2	-	2	800	c.452T>C	c.(451-453)ATA>ACA	p.I151T	FAM184A_uc003pyk.3_Missense_Mutation_p.I31T|FAM184A_uc003pyl.3_Missense_Mutation_p.I31T	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	151	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						CATGGTCACTATGCGTTGGAC	0.398												
PKIB	5570	broad.mit.edu	37	6	123039072	123039072	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:123039072T>C	uc003pyz.2	+	6	594	c.133T>C	c.(133-135)TTG>CTG	p.L45L	PKIB_uc003pza.2_Silent_p.L45L|PKIB_uc003pzb.2_Silent_p.L45L|PKIB_uc003pzc.2_Silent_p.L52L|PKIB_uc011ebq.1_Silent_p.L45L	NM_181794	NP_861459	Q9C010	IPKB_HUMAN	cAMP-dependent protein kinase inhibitor beta	45							cAMP-dependent protein kinase inhibitor activity				0				GBM - Glioblastoma multiforme(226;0.164)		AACCTCAGATTTGCCCCTCAA	0.507												
LAMA2	3908	broad.mit.edu	37	6	129511376	129511376	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:129511376T>C	uc003qbn.2	+	11	1599	c.1494T>C	c.(1492-1494)AGT>AGC	p.S498S	LAMA2_uc003qbo.2_Silent_p.S498S	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	498	Laminin EGF-like 4.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GAGACTGTAGTCGTTGCAAAT	0.423												
LAMA2	3908	broad.mit.edu	37	6	129649468	129649468	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:129649468C>T	uc003qbn.2	+	29	4327	c.4222C>T	c.(4222-4224)CGC>TGC	p.R1408C	LAMA2_uc003qbo.2_Missense_Mutation_p.R1408C	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1408	Laminin EGF-like 14; second part.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		ACCAGGTGGCCGCACCCCTGG	0.502												
LAMA2	3908	broad.mit.edu	37	6	129802514	129802514	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:129802514C>T	uc003qbn.2	+	54	7784	c.7679C>T	c.(7678-7680)TCC>TTC	p.S2560F	LAMA2_uc003qbo.2_Missense_Mutation_p.S2556F|uc003qbq.2_RNA	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	2560	Laminin G-like 3.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AAGAATGAGTCCGGCATCATT	0.483												
MED23	9439	broad.mit.edu	37	6	131911475	131911475	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:131911475C>T	uc003qcs.1	-	27	3968	c.3794G>A	c.(3793-3795)CGT>CAT	p.R1265H	MED23_uc003qcq.2_Missense_Mutation_p.R1271H|MED23_uc003qcr.1_Missense_Mutation_p.R120H	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	1265					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		TATCATACAACGAGTTCTCTC	0.299												
MED23	9439	broad.mit.edu	37	6	131944545	131944545	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:131944545A>G	uc003qcs.1	-	5	516	c.342T>C	c.(340-342)CTT>CTC	p.L114L	MED23_uc003qcq.2_Silent_p.L114L|MED23_uc003qct.1_Silent_p.L114L|MED23_uc011ecb.1_RNA	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	114					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		TTAAGGCCCAAAGCTGTGTTC	0.348												
ENPP3	5169	broad.mit.edu	37	6	132006573	132006573	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:132006573A>G	uc003qcu.3	+	14	1537	c.1190A>G	c.(1189-1191)TAC>TGC	p.Y397C	ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Missense_Mutation_p.Y397C	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	397	Extracellular (Potential).|Phosphodiesterase.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		AACTTCTTCTACATGTACGAA	0.358												
TAAR6	319100	broad.mit.edu	37	6	132892197	132892197	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:132892197A>G	uc011eck.1	+	1	737	c.737A>G	c.(736-738)AAA>AGA	p.K246R		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	246	Cytoplasmic (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		GAGAGTTACAAAGCCAGAGTG	0.403												
VNN2	8875	broad.mit.edu	37	6	133079002	133079002	+	Silent	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:133079002T>G	uc003qdt.2	-	1	32	c.21A>C	c.(19-21)CCA>CCC	p.P7P	VNN2_uc003qds.2_5'Flank|VNN2_uc010kgb.2_Silent_p.P7P|VNN2_uc003qdv.2_Intron	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	7					cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		CCACAGAGATTGGAAAAGAGG	0.388												
ALDH8A1	64577	broad.mit.edu	37	6	135239850	135239850	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:135239850C>T	uc003qew.2	-	7	1220	c.1167G>A	c.(1165-1167)ACG>ACA	p.T389T	ALDH8A1_uc003qex.2_Silent_p.T335T|ALDH8A1_uc010kgh.2_Silent_p.T167T|ALDH8A1_uc011ecx.1_Silent_p.T339T	NM_022568	NP_072090	Q9H2A2	AL8A1_HUMAN	aldehyde dehydrogenase 8A1 isoform 1	389					retinal metabolic process	cytoplasm	retinal dehydrogenase activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00401)|GBM - Glioblastoma multiforme(68;0.0058)		ATATCTCTTCCGTCATGCAGC	0.507												
BCLAF1	9774	broad.mit.edu	37	6	136600996	136600996	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:136600996G>A	uc003qgx.1	-	3	262	c.9C>T	c.(7-9)CGC>CGT	p.R3R	BCLAF1_uc003qgw.1_Silent_p.R3R|BCLAF1_uc003qgy.1_Silent_p.R3R|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Silent_p.R3R	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	3					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TAGAATTGGAGCGACCCATTT	0.308												
MAP7	9053	broad.mit.edu	37	6	136682268	136682268	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:136682268G>A	uc003qgz.2	-	12	1822	c.1576C>T	c.(1576-1578)CGC>TGC	p.R526C	MAP7_uc011edf.1_Missense_Mutation_p.R511C|MAP7_uc011edg.1_Missense_Mutation_p.R556C|MAP7_uc010kgu.2_Missense_Mutation_p.R548C|MAP7_uc011edh.1_Missense_Mutation_p.R511C|MAP7_uc010kgv.2_Missense_Mutation_p.R548C|MAP7_uc010kgs.2_Missense_Mutation_p.R380C|MAP7_uc011edi.1_Missense_Mutation_p.R380C|MAP7_uc010kgq.1_Missense_Mutation_p.R432C|MAP7_uc003qha.1_Missense_Mutation_p.R489C	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	526	Potential.				establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		TCCTCACGGCGAGTCGTCCTC	0.597												
MAP7	9053	broad.mit.edu	37	6	136732783	136732783	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:136732783T>C	uc003qgz.2	-	3	465	c.219A>G	c.(217-219)CGA>CGG	p.R73R	MAP7_uc011edf.1_Silent_p.R58R|MAP7_uc011edg.1_Silent_p.R95R|MAP7_uc010kgu.2_Silent_p.R95R|MAP7_uc011edh.1_Silent_p.R95R|MAP7_uc010kgv.2_Silent_p.R95R|MAP7_uc010kgs.2_5'UTR|MAP7_uc011edi.1_5'UTR|MAP7_uc010kgq.1_Silent_p.R73R|MAP7_uc003qha.1_Silent_p.R73R|MAP7_uc010kgr.2_Intron|MAP7_uc010kgt.2_Silent_p.R95R	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	73					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		GTTCCTCACGTCGCTCCCGGG	0.502												
IL20RA	53832	broad.mit.edu	37	6	137329777	137329777	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:137329777C>T	uc003qhj.2	-	5	1116	c.683G>A	c.(682-684)CGT>CAT	p.R228H	IL20RA_uc011edl.1_Missense_Mutation_p.R179H|IL20RA_uc003qhk.2_Missense_Mutation_p.R117H|IL20RA_uc003qhi.2_Translation_Start_Site	NM_014432	NP_055247	Q9UHF4	I20RA_HUMAN	interleukin 20 receptor, alpha precursor	228	Extracellular (Potential).|Fibronectin type-III 2.					integral to membrane	receptor activity			ovary(2)|skin(2)	4	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000351)|OV - Ovarian serous cystadenocarcinoma(155;0.00459)		AGGCTGAGCACGGCGAGGGGG	0.537												
KIAA1244	57221	broad.mit.edu	37	6	138584111	138584111	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:138584111C>T	uc003qhu.2	+	12	1491	c.1491C>T	c.(1489-1491)AAC>AAT	p.N497N		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	497					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		AGTCAGGGAACGAGAGGAGCC	0.592												
REPS1	85021	broad.mit.edu	37	6	139262580	139262580	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:139262580A>G	uc003qii.2	-	8	1606	c.1027T>C	c.(1027-1029)TTT>CTT	p.F343L	REPS1_uc003qig.3_Missense_Mutation_p.F343L|REPS1_uc011edr.1_Missense_Mutation_p.F343L|REPS1_uc003qij.2_Missense_Mutation_p.F343L|REPS1_uc003qik.2_5'UTR	NM_031922	NP_114128	Q96D71	REPS1_HUMAN	RALBP1 associated Eps domain containing 1	343	EF-hand.|EH 2.					coated pit|plasma membrane	calcium ion binding|SH3 domain binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(68;0.000434)|OV - Ovarian serous cystadenocarcinoma(155;0.000548)		GCAGCACAAAACTCATCCAGT	0.373												
HECA	51696	broad.mit.edu	37	6	139488248	139488248	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:139488248C>T	uc003qin.2	+	2	1384	c.1099C>T	c.(1099-1101)CGC>TGC	p.R367C		NM_016217	NP_057301	Q9UBI9	HDC_HUMAN	headcase	367					respiratory tube development						0				GBM - Glioblastoma multiforme(68;0.000252)|OV - Ovarian serous cystadenocarcinoma(155;0.000387)		TTTCCACGTGCGCATGGAAGA	0.602												
TXLNB	167838	broad.mit.edu	37	6	139563930	139563930	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:139563930T>A	uc011eds.1	-	10	1953	c.1788A>T	c.(1786-1788)GGA>GGT	p.G596G		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	596						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		CAGCCTGTGCTCCAACAGGGA	0.612												
HIVEP2	3097	broad.mit.edu	37	6	143091213	143091213	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:143091213T>A	uc003qjd.2	-	5	5406	c.4663A>T	c.(4663-4665)AAG>TAG	p.K1555*		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1555	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		CCACTGGACTTCTGCCCCGGA	0.522												
HIVEP2	3097	broad.mit.edu	37	6	143093607	143093607	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:143093607G>A	uc003qjd.2	-	5	3012	c.2269C>T	c.(2269-2271)CGC>TGC	p.R757C		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	757					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		GGGTCAAAGCGTTCCGTGTGA	0.522												
UTRN	7402	broad.mit.edu	37	6	145095484	145095484	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:145095484A>G	uc003qkt.2	+	59	8708	c.8616A>G	c.(8614-8616)CTA>CTG	p.L2872L		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	2872	Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		TCCGAAGACTACAAAAAGCAC	0.323												
EPM2A	7957	broad.mit.edu	37	6	145956616	145956616	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:145956616T>C	uc003qkw.2	-	3	840	c.483A>G	c.(481-483)CTA>CTG	p.L161L	EPM2A_uc003qkv.2_Silent_p.L161L|EPM2A_uc010khr.2_Intron|EPM2A_uc003qkx.2_Silent_p.L23L|EPM2A_uc003qku.2_Silent_p.L7L	NM_005670	NP_005661	O95278	EPM2A_HUMAN	laforin isoform a	161					glycogen metabolic process	cytosol|endoplasmic reticulum|nucleus|plasma membrane|polysome	carbohydrate binding|identical protein binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1		Ovarian(120;0.162)		OV - Ovarian serous cystadenocarcinoma(155;3.38e-07)|GBM - Glioblastoma multiforme(68;0.0203)		AGATATTTGGTAGAATTCTAA	0.378												
FBXO30	84085	broad.mit.edu	37	6	146127309	146127309	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:146127309T>C	uc003qla.2	-	2	432	c.233A>G	c.(232-234)GAA>GGA	p.E78G	uc003qky.1_Intron	NM_032145	NP_115521	Q8TB52	FBX30_HUMAN	F-box only protein 30	78	TRAF-type.						ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Ovarian(120;0.0776)		OV - Ovarian serous cystadenocarcinoma(155;1.95e-07)|GBM - Glioblastoma multiforme(68;0.0149)		TTCTAGATGTTCAGCAACTTT	0.413												
SHPRH	257218	broad.mit.edu	37	6	146267451	146267451	+	Silent	SNP	C	C	T	rs140562619	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:146267451C>T	uc003qlf.2	-	7	1638	c.1239G>A	c.(1237-1239)CCG>CCA	p.P413P	SHPRH_uc003qld.2_Silent_p.P413P|SHPRH_uc003qle.2_Silent_p.P413P|SHPRH_uc003qlg.1_5'UTR|SHPRH_uc003qlj.1_Silent_p.P302P	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	413					DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		AATAATGTGACGGAATAAAAT	0.323												
SASH1	23328	broad.mit.edu	37	6	148865705	148865705	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:148865705C>T	uc003qme.1	+	18	3574	c.3099C>T	c.(3097-3099)AGC>AGT	p.S1033S	SASH1_uc011eeb.1_Silent_p.S794S|SASH1_uc003qmf.1_Silent_p.S443S	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	1033	Pro-rich.						protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		CCAGCCCTAGCGACTGTCCCC	0.711												
C6orf72	116254	broad.mit.edu	37	6	149911891	149911891	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:149911891G>A	uc003qmq.1	+	8	937	c.910G>A	c.(910-912)GTC>ATC	p.V304I		NM_138785	NP_620140	Q9NU53	CF072_HUMAN	hypothetical protein LOC116254 precursor	304	Cytoplasmic (Potential).					integral to membrane					0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;9.66e-12)|GBM - Glioblastoma multiforme(68;0.171)		TAAAGTGGACGTCATACCTGT	0.343												
LATS1	9113	broad.mit.edu	37	6	150004383	150004383	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:150004383A>G	uc003qmu.1	-	4	2390	c.1842T>C	c.(1840-1842)CCT>CCC	p.P614P	LATS1_uc010kif.1_Silent_p.P509P|LATS1_uc003qmv.1_Silent_p.P614P|LATS1_uc003qmw.2_Silent_p.P614P|LATS1_uc010kig.1_Silent_p.P509P	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	614	Interaction with YAP1.				cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		TAACAGTAATAGGTGAAGTTG	0.363												
LATS1	9113	broad.mit.edu	37	6	150004895	150004895	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:150004895A>G	uc003qmu.1	-	4	1878	c.1330T>C	c.(1330-1332)TCC>CCC	p.S444P	LATS1_uc010kif.1_Missense_Mutation_p.S339P|LATS1_uc003qmv.1_Missense_Mutation_p.S444P|LATS1_uc003qmw.2_Missense_Mutation_p.S444P|LATS1_uc010kig.1_Missense_Mutation_p.S339P	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	444					cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		CTGCTCGGGGATGACTGGGCT	0.438												
PLEKHG1	57480	broad.mit.edu	37	6	151130245	151130245	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:151130245T>C	uc003qny.1	+	9	1229	c.917T>C	c.(916-918)ATA>ACA	p.I306T	PLEKHG1_uc011eel.1_Missense_Mutation_p.I346T|PLEKHG1_uc011eem.1_Missense_Mutation_p.I365T|PLEKHG1_uc003qnz.2_Missense_Mutation_p.I306T	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	306					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		TCTCAGGAGATACAGAGTTTG	0.562												
AKAP12	9590	broad.mit.edu	37	6	151671447	151671447	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:151671447G>A	uc011eep.1	+	4	2161	c.1921G>A	c.(1921-1923)GCT>ACT	p.A641T	AKAP12_uc003qoe.2_Missense_Mutation_p.A641T|AKAP12_uc003qof.2_Missense_Mutation_p.A543T|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Missense_Mutation_p.A536T	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	641					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		GGTCAAGAGCGCTACCTTGTC	0.512												
AKAP12	9590	broad.mit.edu	37	6	151674211	151674211	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:151674211T>C	uc011eep.1	+	4	4925	c.4685T>C	c.(4684-4686)GTA>GCA	p.V1562A	AKAP12_uc003qoe.2_Missense_Mutation_p.V1562A|AKAP12_uc003qof.2_Missense_Mutation_p.V1464A|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Missense_Mutation_p.V1457A	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	1562					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		GACCAGTTTGTACGTACAGAA	0.458												
C6orf97	80129	broad.mit.edu	37	6	151917602	151917602	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:151917602A>C	uc003qol.2	+	9	1689	c.1600A>C	c.(1600-1602)ACC>CCC	p.T534P		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	534	Potential.										0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		CGCGCATCTTACCATCAGGAA	0.552												
SYNE1	23345	broad.mit.edu	37	6	152539517	152539517	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:152539517T>C	uc010kiw.2	-	121	22668	c.22066A>G	c.(22066-22068)ACC>GCC	p.T7356A	SYNE1_uc010kiv.2_Missense_Mutation_p.T1880A|SYNE1_uc003qos.3_Missense_Mutation_p.T1880A|SYNE1_uc003qot.3_Missense_Mutation_p.T7285A|SYNE1_uc003qou.3_Missense_Mutation_p.T7356A|SYNE1_uc003qor.3_Missense_Mutation_p.T256A	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7356	Spectrin 24.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTGGCAAAGGTTTCATAATCA	0.378										HNSCC(10;0.0054)		
SYNE1	23345	broad.mit.edu	37	6	152643022	152643022	+	Splice_Site	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:152643022C>T	uc010kiw.2	-	83	16520	c.15918_splice	c.e83-1	p.N5306_splice	SYNE1_uc003qot.3_Splice_Site_p.N5235_splice|SYNE1_uc003qou.3_Splice_Site_p.N5306_splice|SYNE1_uc010kiz.2_Splice_Site_p.N1061_splice	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1						cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTCCTGCATGCTTCAGAAACA	0.398										HNSCC(10;0.0054)		
SYNE1	23345	broad.mit.edu	37	6	152786491	152786491	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:152786491T>C	uc010kiw.2	-	18	2436	c.1834A>G	c.(1834-1836)ATC>GTC	p.I612V	SYNE1_uc003qot.3_Missense_Mutation_p.I619V|SYNE1_uc003qou.3_Missense_Mutation_p.I612V|SYNE1_uc010kjb.1_Missense_Mutation_p.I595V|SYNE1_uc003qpa.1_Missense_Mutation_p.I612V|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Missense_Mutation_p.I128V|SYNE1_uc003qoz.2_Missense_Mutation_p.I44V|SYNE1_uc003qoy.2_Missense_Mutation_p.I179V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	612	Cytoplasmic (Potential).|HAT 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CAGTTAGAGATCACTTCTTCC	0.448										HNSCC(10;0.0054)		
SYNE1	23345	broad.mit.edu	37	6	152831446	152831446	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:152831446C>T	uc010kiw.2	-	8	1065	c.463G>A	c.(463-465)GTG>ATG	p.V155M	SYNE1_uc003qot.3_Missense_Mutation_p.V162M|SYNE1_uc003qou.3_Missense_Mutation_p.V155M|SYNE1_uc010kjb.1_Missense_Mutation_p.V155M|SYNE1_uc003qpa.1_Missense_Mutation_p.V155M	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	155	Actin-binding.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATGCTGTCCACGGAGGATGCG	0.473										HNSCC(10;0.0054)		
MTRF1L	54516	broad.mit.edu	37	6	153315653	153315653	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:153315653T>C	uc003qpi.3	-	4	787	c.682A>G	c.(682-684)ACT>GCT	p.T228A	MTRF1L_uc003qpl.3_Missense_Mutation_p.T228A|MTRF1L_uc011efa.1_Missense_Mutation_p.T192A|MTRF1L_uc003qpj.3_Missense_Mutation_p.T86A|MTRF1L_uc003qpk.3_Missense_Mutation_p.T192A	NM_019041	NP_061914	Q9UGC7	RF1ML_HUMAN	mitochondrial translational release factor	228						mitochondrion	translation release factor activity, codon specific				0		Ovarian(120;0.125)		OV - Ovarian serous cystadenocarcinoma(155;4.24e-10)|BRCA - Breast invasive adenocarcinoma(81;0.0888)		CTTACCTCAGTAGGCTGGGGT	0.473												
RBM16	22828	broad.mit.edu	37	6	155114029	155114029	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:155114029T>C	uc003qqa.2	+	6	626	c.394T>C	c.(394-396)TTG>CTG	p.L132L	RBM16_uc011efj.1_Silent_p.L198L|RBM16_uc011efk.1_Silent_p.L177L|RBM16_uc003qpz.2_Silent_p.L132L|RBM16_uc010kji.2_Silent_p.L153L	NM_014892	NP_055707	Q9UPN6	SCAF8_HUMAN	RNA-binding motif protein 16	132	CID.				mRNA processing|RNA splicing	nuclear matrix|spliceosomal complex	nucleotide binding|RNA binding|RNA polymerase core enzyme binding				0		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;2.33e-15)|BRCA - Breast invasive adenocarcinoma(81;0.00524)		TCAGCCCCTTTTGGATATGGC	0.393												
ARID1B	57492	broad.mit.edu	37	6	157522190	157522190	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:157522190C>G	uc003qqn.2	+	18	4560	c.4408C>G	c.(4408-4410)CCC>GCC	p.P1470A	ARID1B_uc003qqo.2_Missense_Mutation_p.P1430A|ARID1B_uc003qqp.2_Missense_Mutation_p.P1417A	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1475	Pro-rich.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		TACACAGGCGCCCCCTTACCC	0.587												
ARID1B	57492	broad.mit.edu	37	6	157527749	157527749	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:157527749A>G	uc003qqn.2	+	20	5572	c.5420A>G	c.(5419-5421)GAC>GGC	p.D1807G	ARID1B_uc003qqo.2_Missense_Mutation_p.D1767G|ARID1B_uc003qqp.2_Missense_Mutation_p.D1754G	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1812					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		GGCGGGGGTGACACCACCGAG	0.542												
C6orf35	729515	broad.mit.edu	37	6	157739925	157739925	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:157739925C>T	uc003sih.3	-	3	479	c.216G>A	c.(214-216)CCG>CCA	p.P72P		NM_018452	NP_060922	Q9NWH2	CF035_HUMAN	hypothetical protein LOC729515	72						integral to membrane					0						ACCCGCTTTCCGGTAATGCAG	0.498												
SYNJ2	8871	broad.mit.edu	37	6	158483115	158483115	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:158483115T>C	uc003qqx.1	+	8	1121	c.1046T>C	c.(1045-1047)TTG>TCG	p.L349S	SYNJ2_uc011efm.1_RNA|SYNJ2_uc003qqw.1_Missense_Mutation_p.L349S|SYNJ2_uc003qqy.1_Missense_Mutation_p.L62S|SYNJ2_uc011efn.1_Missense_Mutation_p.L277S|SYNJ2_uc010kjo.1_Missense_Mutation_p.L298S|SYNJ2_uc003qqz.1_5'UTR	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	349	SAC.						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		CTAGAGAAATTGGAGACCCTC	0.522												
FNDC1	84624	broad.mit.edu	37	6	159642717	159642717	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:159642717G>A	uc010kjv.2	+	6	955	c.755G>A	c.(754-756)CGA>CAA	p.R252Q	FNDC1_uc010kjw.1_Missense_Mutation_p.R200Q	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	252						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CTAACAAAGCGAAAGATTTCA	0.483												
ACAT2	39	broad.mit.edu	37	6	160197274	160197274	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:160197274A>G	uc010kjy.2	+	6	858	c.727A>G	c.(727-729)ACG>GCG	p.T243A	ACAT2_uc011efw.1_Missense_Mutation_p.T272A	NM_005891	NP_005882	Q9BWD1	THIC_HUMAN	acetyl-Coenzyme A acetyltransferase 2	243						mitochondrion|nucleolus	acetyl-CoA C-acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.51e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		TACTGATGGAACGGGAACAGT	0.418												
IGF2R	3482	broad.mit.edu	37	6	160466820	160466820	+	Silent	SNP	C	C	T	rs139665293		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:160466820C>T	uc003qta.2	+	14	1957	c.1809C>T	c.(1807-1809)GGC>GGT	p.G603G		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	603	4.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		CTGGGGAAGGCGGTTGCTTTT	0.493												
IGF2R	3482	broad.mit.edu	37	6	160494304	160494304	+	Missense_Mutation	SNP	G	G	A	rs140858283		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:160494304G>A	uc003qta.2	+	34	4898	c.4750G>A	c.(4750-4752)GTG>ATG	p.V1584M		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	1584	11.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		GCTGAGATACGTGGACCAGGT	0.557												
SLC22A1	6580	broad.mit.edu	37	6	160560826	160560826	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:160560826C>T	uc003qtc.2	+	7	1308	c.1203C>T	c.(1201-1203)GGC>GGT	p.G401G	SLC22A1_uc003qtd.2_Silent_p.G401G	NM_003057	NP_003048	O15245	S22A1_HUMAN	solute carrier family 22 member 1 isoform a	401	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	organic cation transmembrane transporter activity|protein binding				0		Breast(66;0.000776)|Ovarian(120;0.00556)		OV - Ovarian serous cystadenocarcinoma(65;2.73e-17)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)		ACCGCGTGGGCCGCATCTACC	0.552												
SLC22A3	6581	broad.mit.edu	37	6	160819102	160819102	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:160819102A>G	uc003qti.2	+	2	548	c.521A>G	c.(520-522)TAT>TGT	p.Y174C	SLC22A3_uc011efx.1_RNA	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	174						integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		ACCTTAGGCTATGCAGCAGAC	0.433												
SLC22A3	6581	broad.mit.edu	37	6	160858109	160858109	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:160858109T>G	uc003qti.2	+	7	1181	c.1154T>G	c.(1153-1155)ATC>AGC	p.I385S	SLC22A3_uc011efx.1_RNA	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	385	Helical; (Potential).					integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		GACTTTTTCATCTCGGGCGTG	0.512												
LPA	4018	broad.mit.edu	37	6	161007564	161007564	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:161007564G>A	uc003qtl.2	-	26	4166	c.4046C>T	c.(4045-4047)ACG>ATG	p.T1349M		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3857	Kringle 34.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TGGACATTGCGTCAGGTTGCA	0.522												
PLG	5340	broad.mit.edu	37	6	161162399	161162399	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:161162399T>C	uc003qtm.3	+	17	2138	c.2075T>C	c.(2074-2076)GTG>GCG	p.V692A		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	692	Peptidase S1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	CCAAATTATGTGGTCGCTGAC	0.478												
MAP3K4	4216	broad.mit.edu	37	6	161523764	161523764	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:161523764C>T	uc003qtn.2	+	19	3951	c.3809C>T	c.(3808-3810)TCC>TTC	p.S1270F	MAP3K4_uc010kkc.1_Missense_Mutation_p.S1266F|MAP3K4_uc003qto.2_Missense_Mutation_p.S1220F|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Missense_Mutation_p.S723F|MAP3K4_uc003qtp.2_Missense_Mutation_p.S206F|MAP3K4_uc003qtq.2_5'UTR	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1270					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		TCAAGTGGGTCCACAAGAAGA	0.323												
AGPAT4	56895	broad.mit.edu	37	6	161653160	161653160	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:161653160T>C	uc003qtr.1	-	2	313	c.86A>G	c.(85-87)AAC>AGC	p.N29S	AGPAT4_uc003qts.1_5'UTR|AGPAT4_uc011egb.1_Missense_Mutation_p.N29S|AGPAT4_uc003qtt.1_RNA|AGPAT4_uc011egc.1_Missense_Mutation_p.N29S|AGPAT4_uc011egd.1_Intron|AGPAT4_uc011ege.1_Missense_Mutation_p.N29S	NM_020133	NP_064518	Q9NRZ5	PLCD_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 4	29	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity|protein binding				0		Breast(66;0.000289)|Ovarian(120;0.0266)|Prostate(117;0.0285)		OV - Ovarian serous cystadenocarcinoma(65;2.23e-17)|BRCA - Breast invasive adenocarcinoma(81;3.58e-05)		CTGAATGGTGTTGATGATTAG	0.517												
PACRG	135138	broad.mit.edu	37	6	163149299	163149299	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:163149299A>G	uc003qua.2	+	2	256	c.32A>G	c.(31-33)AAC>AGC	p.N11S	PARK2_uc003qtx.3_5'Flank|PARK2_uc003qty.3_5'Flank|PARK2_uc003qtz.3_5'Flank|PARK2_uc010kke.1_5'Flank|PACRG_uc003qub.2_Missense_Mutation_p.N11S|PACRG_uc003quc.2_Missense_Mutation_p.N11S	NM_152410	NP_689623	Q96M98	PACRG_HUMAN	parkin co-regulated gene protein isoform 1	11											0		Breast(66;2.41e-05)|Ovarian(120;0.0245)|Prostate(117;0.0273)|all_neural(5;0.0416)|Glioma(2;0.203)		OV - Ovarian serous cystadenocarcinoma(33;4.31e-19)|GBM - Glioblastoma multiforme(2;7.42e-11)|BRCA - Breast invasive adenocarcinoma(81;3.19e-05)|KIRC - Kidney renal clear cell carcinoma(3;0.205)|Kidney(3;0.242)		CTGAGCTTAAACAAATGCCCA	0.488												
SMOC2	64094	broad.mit.edu	37	6	168947819	168947819	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:168947819T>C	uc003qws.1	+	6	552	c.532T>C	c.(532-534)TTG>CTG	p.L178L	SMOC2_uc003qwr.1_Silent_p.L189L	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2	178					signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		AGCTCCAGCGTTGGAGACTCA	0.522												
SMOC2	64094	broad.mit.edu	37	6	169064767	169064767	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:169064767T>C	uc003qws.1	+	12	1319	c.1299T>C	c.(1297-1299)CAT>CAC	p.H433H	SMOC2_uc003qwr.1_Silent_p.H444H|SMOC2_uc011egu.1_Silent_p.H110H	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2	433					signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		CCAGAGGTCATGCTGAAAGTA	0.299												
THBS2	7058	broad.mit.edu	37	6	169621532	169621532	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:169621532A>G	uc003qwt.2	-	21	3612	c.3364T>C	c.(3364-3366)TAC>CAC	p.Y1122H		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	1122	TSP C-terminal.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CACCTGATGTAGCCAGTCTTG	0.522												
THBS2	7058	broad.mit.edu	37	6	169625316	169625316	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:169625316A>G	uc003qwt.2	-	18	2945	c.2697T>C	c.(2695-2697)GAT>GAC	p.D899D		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	899	TSP type-3 7.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		cgttgtcatcatcagggtcac	0.194												
THBS2	7058	broad.mit.edu	37	6	169625355	169625355	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:169625355G>A	uc003qwt.2	-	18	2906	c.2658C>T	c.(2656-2658)GAC>GAT	p.D886D		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	886	TSP type-3 7.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		ctctgtcatggtcagcctggt	0.119												
THBS2	7058	broad.mit.edu	37	6	169648841	169648841	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:169648841C>T	uc003qwt.2	-	4	528	c.280G>A	c.(280-282)GGC>AGC	p.G94S		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	94	TSP N-terminal.|Heparin-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CTGGACTTGCCGTCCTGCTTG	0.622												
DLL1	28514	broad.mit.edu	37	6	170597560	170597560	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:170597560C>T	uc003qxm.2	-	4	907	c.437G>A	c.(436-438)CGC>CAC	p.R146H	DLL1_uc011ehc.1_Missense_Mutation_p.R146H|DLL1_uc003qxn.3_3'UTR	NM_005618	NP_005609	O00548	DLL1_HUMAN	delta-like 1 precursor	146	Extracellular (Potential).				cell communication|cell fate determination|hemopoiesis|Notch receptor processing|Notch signaling pathway|regulation of cell adhesion	extracellular region|integral to plasma membrane	calcium ion binding|Notch binding			lung(4)|ovary(1)	5		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;6.71e-23)|BRCA - Breast invasive adenocarcinoma(81;4.81e-06)|GBM - Glioblastoma multiforme(31;0.0584)		GGTGGCCAGGCGGCTGATGAG	0.627												
FAM120B	84498	broad.mit.edu	37	6	170632185	170632185	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:170632185G>A	uc003qxp.2	+	3	1861	c.1753G>A	c.(1753-1755)GTC>ATC	p.V585I	FAM120B_uc003qxo.1_Missense_Mutation_p.V585I|FAM120B_uc011ehd.1_Intron	NM_032448	NP_115824	Q96EK7	F120B_HUMAN	family with sequence similarity 120B	585					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1		Breast(66;0.000338)|Esophageal squamous(34;0.241)		OV - Ovarian serous cystadenocarcinoma(33;3.94e-22)|BRCA - Breast invasive adenocarcinoma(81;6.47e-06)|GBM - Glioblastoma multiforme(31;0.0899)		AACACATCACGTCCAAGCAGA	0.408												
GET4	51608	broad.mit.edu	37	7	930607	930607	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:930607C>T	uc003sjl.1	+	5	601	c.509C>T	c.(508-510)GCG>GTG	p.A170V	GET4_uc003sjj.1_RNA	NM_015949	NP_057033	Q7L5D6	GET4_HUMAN	hypothetical protein LOC51608	170					tail-anchored membrane protein insertion into ER membrane|transport	BAT3 complex	protein binding				0						CTGCACTCAGCGGACGGGGAG	0.498												
GPER	2852	broad.mit.edu	37	7	1131459	1131459	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:1131459A>G	uc010ksd.1	+	2	484	c.95A>G	c.(94-96)AAC>AGC	p.N32S	C7orf50_uc003sju.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron|GPER_uc003sjz.1_Missense_Mutation_p.N32S|GPER_uc003ska.1_Missense_Mutation_p.N32S|GPER_uc003skb.2_Missense_Mutation_p.N32S	NM_001098201	NP_001091671	Q99527	GPER_HUMAN	G protein-coupled receptor 30	32	Extracellular (Potential).			Missing (in Ref. 7; AAB02736).		endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;2.32e-16)		CCCGAGCTCAACCTGTCCCAC	0.667												
CHST12	55501	broad.mit.edu	37	7	2472497	2472497	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:2472497A>G	uc003smc.2	+	2	358	c.223A>G	c.(223-225)AGT>GGT	p.S75G	CHST12_uc003smd.2_Missense_Mutation_p.S75G	NM_018641	NP_061111	Q9NRB3	CHSTC_HUMAN	carbohydrate sulfotransferase 12	75	Lumenal (Potential).				dermatan sulfate biosynthetic process	integral to Golgi membrane	3'-phosphoadenosine 5'-phosphosulfate binding|chondroitin 4-sulfotransferase activity|protein binding			kidney(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0847)|OV - Ovarian serous cystadenocarcinoma(56;2.25e-13)		CAAGTTTCTCAGTGCTGGCGT	0.677												
TTYH3	80727	broad.mit.edu	37	7	2698073	2698073	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:2698073C>T	uc003smp.2	+	12	1591	c.1404C>T	c.(1402-1404)AAC>AAT	p.N468N	TTYH3_uc010ksn.2_Silent_p.N188N|TTYH3_uc003smq.2_Silent_p.N297N	NM_025250	NP_079526	Q9C0H2	TTYH3_HUMAN	tweety 3	468	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;2.04e-14)		CCGTCAGCAACGCCCCGGTCA	0.667												
CARD11	84433	broad.mit.edu	37	7	2953031	2953031	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:2953031T>C	uc003smv.2	-	22	3313	c.2909A>G	c.(2908-2910)TAC>TGC	p.Y970C		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	970					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GCGCTCGCAGTAGAAGGCGCG	0.657			Mis		DLBCL							
CARD11	84433	broad.mit.edu	37	7	2979388	2979388	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:2979388T>C	uc003smv.2	-	6	1263	c.859A>G	c.(859-861)ATC>GTC	p.I287V		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	287	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CTCACCTGGATGATGGACTGC	0.592			Mis		DLBCL							
CARD11	84433	broad.mit.edu	37	7	2987388	2987388	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:2987388G>A	uc003smv.2	-	3	445	c.41C>T	c.(40-42)ACG>ATG	p.T14M		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	14					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		ATCCTTCAGCGTCTCCATGTA	0.458			Mis		DLBCL							
SDK1	221935	broad.mit.edu	37	7	4007008	4007008	+	Silent	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:4007008A>T	uc003smx.2	+	10	1627	c.1488A>T	c.(1486-1488)ACA>ACT	p.T496T		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	496	Ig-like C2-type 5.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		ACGGGATGACAGCCATTCTAA	0.547												
SDK1	221935	broad.mit.edu	37	7	4198165	4198165	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:4198165G>A	uc003smx.2	+	31	4850	c.4711G>A	c.(4711-4713)GTG>ATG	p.V1571M	SDK1_uc010kso.2_Missense_Mutation_p.V847M|SDK1_uc003smy.2_Missense_Mutation_p.V58M	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1571	Fibronectin type-III 9.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GACAGAGGCGGTGACCACGCT	0.602												
SDK1	221935	broad.mit.edu	37	7	4304866	4304866	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:4304866A>G	uc003smx.2	+	45	6631	c.6492A>G	c.(6490-6492)GCA>GCG	p.A2164A	SDK1_uc010kso.2_Silent_p.A1420A|SDK1_uc003smy.2_Silent_p.A651A|SDK1_uc003smz.2_Silent_p.A224A	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	2164	Extracellular (Potential).|Cytoplasmic (Potential).				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		AGGGCCGCGCACCTGCGCCGC	0.697												
KIAA0415	9907	broad.mit.edu	37	7	4830774	4830774	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:4830774A>G	uc003sne.2	+	17	2265	c.2182A>G	c.(2182-2184)ACC>GCC	p.T728A	KIAA0415_uc010ksp.2_RNA|KIAA0415_uc003snf.2_Missense_Mutation_p.T205A	NM_014855	NP_055670	O43299	K0415_HUMAN	hypothetical protein LOC9907	728					cell death|double-strand break repair via homologous recombination	cytoplasm|nucleus	protein binding			central_nervous_system(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.091)|OV - Ovarian serous cystadenocarcinoma(56;8.35e-15)		AAAGATGAGGACCCTGGCTCA	0.637												
RADIL	55698	broad.mit.edu	37	7	4856879	4856879	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:4856879A>G	uc003snj.1	-	7	1892	c.1719T>C	c.(1717-1719)TAT>TAC	p.Y573Y	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_Silent_p.Y78Y|RADIL_uc011jwc.1_Silent_p.Y333Y|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	573	Dilute.				cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		CCTTGGAGACATAGTAGACGC	0.617												
RBAK	57786	broad.mit.edu	37	7	5104755	5104755	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:5104755A>G	uc010kss.1	+	6	1992	c.1668A>G	c.(1666-1668)GAA>GAG	p.E556E	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Silent_p.E556E	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	556	Interaction with AR.|C2H2-type 11.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		ACTATACTGAACATTATAGAA	0.388												
WIPI2	26100	broad.mit.edu	37	7	5269339	5269339	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:5269339A>G	uc003snv.2	+	12	1438	c.1222A>G	c.(1222-1224)ACT>GCT	p.T408A	WIPI2_uc003snw.2_Intron|WIPI2_uc003snx.2_Missense_Mutation_p.T390A|WIPI2_uc003sny.2_Intron|WIPI2_uc010ksv.2_Missense_Mutation_p.T264A|WIPI2_uc003soa.2_Intron|WIPI2_uc003sob.2_Missense_Mutation_p.T151A	NM_015610	NP_056425	Q9Y4P8	WIPI2_HUMAN	WD repeat domain, phosphoinositide interacting 2	408					autophagic vacuole assembly	cytosol|PAS complex|pre-autophagosomal structure membrane	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding			ovary(2)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0925)|OV - Ovarian serous cystadenocarcinoma(56;2.59e-14)		AGGAAAAGGTACTTACGTGCC	0.567												
SLC29A4	222962	broad.mit.edu	37	7	5338952	5338952	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:5338952T>C	uc003sod.2	+	9	1264	c.1103T>C	c.(1102-1104)CTG>CCG	p.L368P	SLC29A4_uc003soc.2_Missense_Mutation_p.L368P|SLC29A4_uc003soe.2_Missense_Mutation_p.L354P|SLC29A4_uc010ksw.2_RNA	NM_153247	NP_694979	Q7RTT9	S29A4_HUMAN	solute carrier family 29 (nucleoside	368	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|integral to membrane	nucleoside transmembrane transporter activity			liver(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0903)|OV - Ovarian serous cystadenocarcinoma(56;2.65e-15)		TTCATCACGCTGTGCCTGTTC	0.637												
TNRC18	84629	broad.mit.edu	37	7	5401582	5401582	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:5401582T>C	uc003soi.3	-	13	4827	c.4478A>G	c.(4477-4479)CAG>CGG	p.Q1493R		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	1493	Potential.						DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		CTCCTTGTACTGGCGCTGCAC	0.522												
FSCN1	6624	broad.mit.edu	37	7	5643159	5643159	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:5643159G>A	uc003sou.2	+	3	1136	c.1022G>A	c.(1021-1023)CGT>CAT	p.R341H	FSCN1_uc003sov.2_Missense_Mutation_p.R63H|FSCN1_uc003sow.2_Missense_Mutation_p.R63H	NM_003088	NP_003079	Q16658	FSCN1_HUMAN	fascin 1	341					actin filament bundle assembly|cell migration|cell proliferation	cell junction|cytoplasm|filopodium|invadopodium|stress fiber	actin filament binding|drug binding|protein binding, bridging			ovary(1)	1		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;1.21e-13)		ATCGAGTGGCGTGACCGGCGC	0.622												
ZDHHC4	55146	broad.mit.edu	37	7	6624663	6624663	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:6624663T>C	uc003sqi.2	+	8	871	c.513T>C	c.(511-513)TGT>TGC	p.C171C	ZDHHC4_uc003sql.2_Silent_p.C171C|ZDHHC4_uc003sqh.2_Silent_p.C171C|ZDHHC4_uc003sqj.2_Silent_p.C171C|ZDHHC4_uc003sqk.2_Silent_p.C171C|ZDHHC4_uc003sqm.2_Silent_p.C171C	NM_001134388	NP_001127860	Q9NPG8	ZDHC4_HUMAN	zinc finger, DHHC-type containing 4	171	DHHC-type.					integral to membrane	acyltransferase activity|zinc ion binding			breast(1)|pancreas(1)	2		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.1)		GTAACTGGTGTGTGCACCGTT	0.537												
ZDHHC4	55146	broad.mit.edu	37	7	6628294	6628294	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:6628294T>C	uc003sqi.2	+	9	1146	c.788T>C	c.(787-789)GTC>GCC	p.V263A	ZDHHC4_uc003sql.2_Missense_Mutation_p.V263A|ZDHHC4_uc003sqh.2_Missense_Mutation_p.V263A|ZDHHC4_uc003sqj.2_Missense_Mutation_p.V263A|ZDHHC4_uc003sqk.2_Missense_Mutation_p.V263A|ZDHHC4_uc003sqm.2_Missense_Mutation_p.V263A|C7orf26_uc003sqo.1_5'Flank|C7orf26_uc003sqp.1_5'Flank|C7orf26_uc003sqq.1_5'Flank	NM_001134388	NP_001127860	Q9NPG8	ZDHC4_HUMAN	zinc finger, DHHC-type containing 4	263	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			breast(1)|pancreas(1)	2		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.1)		CTGGGCTTTGTCGTGGTTCTG	0.527												
COL28A1	340267	broad.mit.edu	37	7	7410437	7410437	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:7410437C>T	uc003src.1	-	33	3102	c.2985G>A	c.(2983-2985)TCG>TCA	p.S995S	COL28A1_uc011jxe.1_Silent_p.S678S	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	995					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		GTTGAGGTGACGATGAACCAA	0.363												
COL28A1	340267	broad.mit.edu	37	7	7514247	7514247	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:7514247T>C	uc003src.1	-	15	1404	c.1287A>G	c.(1285-1287)TCA>TCG	p.S429S	COL28A1_uc011jxe.1_Silent_p.S112S|COL28A1_uc003srd.2_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	429					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CCCCTTTGATTGACAGGCCTT	0.403												
COL28A1	340267	broad.mit.edu	37	7	7571101	7571101	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:7571101T>C	uc003src.1	-	3	676	c.559A>G	c.(559-561)ACC>GCC	p.T187A	COL28A1_uc011jxe.1_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	187	VWFA 1.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		AGTGCAATGGTGATAAATGAT	0.408												
THSD7A	221981	broad.mit.edu	37	7	11415490	11415490	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:11415490T>C	uc003ssf.3	-	27	5157	c.4905A>G	c.(4903-4905)AAA>AAG	p.K1635K	uc003ssb.2_Intron|THSD7A_uc003ssd.3_Silent_p.K139K	NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1635	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		TTCTTTGGGGTTTCTTTGGCT	0.348										HNSCC(18;0.044)		
THSD7A	221981	broad.mit.edu	37	7	11676323	11676323	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:11676323A>G	uc003ssf.3	-	2	708	c.456T>C	c.(454-456)GGT>GGC	p.G152G		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	152	Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		TCACCTGAATACCTTCTTCCC	0.493										HNSCC(18;0.044)		
DNAH11	8701	broad.mit.edu	37	7	21598618	21598618	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:21598618T>C	uc003svc.2	+	3	723	c.692_splice	c.e3+2	p.K231_splice		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11						microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGAGAACAAGTACGTAACAGT	0.264									Kartagener_syndrome			
DNAH11	8701	broad.mit.edu	37	7	21744053	21744053	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:21744053T>C	uc003svc.2	+	39	6327	c.6296T>C	c.(6295-6297)GTA>GCA	p.V2099A		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2099					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTTTTCTAGGTACTCATGAGA	0.378									Kartagener_syndrome			
C7orf30	115416	broad.mit.edu	37	7	23340583	23340583	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:23340583A>G	uc003swd.1	+	2	414	c.382A>G	c.(382-384)AGT>GGT	p.S128G		NM_138446	NP_612455	Q96EH3	CG030_HUMAN	hypothetical protein LOC115416	128						mitochondrion					0			GBM - Glioblastoma multiforme(13;0.154)			TGTGATTGTTAGTGGAACTTC	0.403												
IGF2BP3	10643	broad.mit.edu	37	7	23387308	23387308	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:23387308C>T	uc003swg.2	-	7	995	c.729G>A	c.(727-729)TCG>TCA	p.S243S	IGF2BP3_uc003swf.2_5'UTR	NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	243	KH 1.				anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						GGATAGTAATCGACTTCTCAG	0.453												
OSBPL3	26031	broad.mit.edu	37	7	24881939	24881939	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:24881939C>T	uc003sxf.2	-	13	1765	c.1360G>A	c.(1360-1362)GCT>ACT	p.A454T	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_RNA|OSBPL3_uc003sxg.2_Missense_Mutation_p.A418T|OSBPL3_uc003sxh.2_Missense_Mutation_p.A423T|OSBPL3_uc003sxi.2_Missense_Mutation_p.A387T|OSBPL3_uc003sxj.1_Missense_Mutation_p.A183T|OSBPL3_uc003sxk.1_Missense_Mutation_p.A152T	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	454					lipid transport		lipid binding|protein binding			skin(1)	1						ACTTCCTGAGCATCAAAAAAC	0.398												
HOXA7	3204	broad.mit.edu	37	7	27195919	27195919	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:27195919G>A	uc003sys.2	-	1	378	c.246C>T	c.(244-246)TGC>TGT	p.C82C		NM_006896	NP_008827	P31268	HXA7_HUMAN	homeobox A7	82					angiogenesis|negative regulation of cell-matrix adhesion|negative regulation of keratinocyte differentiation|negative regulation of leukocyte migration|negative regulation of monocyte differentiation|negative regulation of transcription from RNA polymerase II promoter		sequence-specific DNA binding|transcription factor binding				0						CGTAGGAGGCGCAGGGCAGGT	0.662												
TRIL	9865	broad.mit.edu	37	7	28996503	28996503	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:28996503A>G	uc003szt.2	-	3	1527	c.1160T>C	c.(1159-1161)TTC>TCC	p.F387S	uc003szu.1_5'Flank	NM_014817	NP_055632	Q7L0X0	TRIL_HUMAN	TLR4 interactor with leucine rich repeats	387	Extracellular (Potential).|LRRCT.				inflammatory response|innate immune response|regulation of cytokine production involved in immune response|toll-like receptor 4 signaling pathway	lipopolysaccharide receptor complex	lipopolysaccharide binding				0						ACACTGCACGAAGACAGTGAG	0.652												
SCRN1	9805	broad.mit.edu	37	7	29980470	29980470	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:29980470A>G	uc010kvp.2	-	4	771	c.567T>C	c.(565-567)AGT>AGC	p.S189S	SCRN1_uc011jzy.1_Silent_p.S121S|SCRN1_uc003tak.2_Silent_p.S189S|SCRN1_uc011jzz.1_Silent_p.S189S|SCRN1_uc011kaa.1_Silent_p.S209S|SCRN1_uc011jzw.1_Intron|SCRN1_uc011jzx.1_Intron	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	189					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						GCGAAAGCTGACTGCAAATGC	0.448												
SCRN1	9805	broad.mit.edu	37	7	29983717	29983717	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:29983717A>G	uc010kvp.2	-	3	624	c.420T>C	c.(418-420)GGT>GGC	p.G140G	SCRN1_uc011jzy.1_Silent_p.G72G|SCRN1_uc003tak.2_Silent_p.G140G|SCRN1_uc011jzz.1_Silent_p.G140G|SCRN1_uc011kaa.1_Silent_p.G160G|SCRN1_uc011jzw.1_Silent_p.G72G|SCRN1_uc011jzx.1_Intron	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	140					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						AGTAATTCCCACCTTGTCCAT	0.468												
PLEKHA8	84725	broad.mit.edu	37	7	30094382	30094382	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:30094382A>G	uc003tam.1	+	8	945	c.854A>G	c.(853-855)AAC>AGC	p.N285S	PLEKHA8_uc003tao.2_Missense_Mutation_p.N169S|PLEKHA8_uc003tap.1_Missense_Mutation_p.N285S|PLEKHA8_uc003tan.2_Missense_Mutation_p.N285S	NM_032639	NP_116028	Q96JA3	PKHA8_HUMAN	pleckstrin homology domain containing, family A	285					protein transport	cytoplasm	glycolipid binding|glycolipid transporter activity			breast(3)|ovary(1)	4						CATGACAATAACTTGACTCAG	0.378												
FAM188B	84182	broad.mit.edu	37	7	30825490	30825490	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:30825490T>C	uc003tbt.2	+	4	622	c.545T>C	c.(544-546)ATA>ACA	p.I182T	FAM188B_uc010kwe.2_Missense_Mutation_p.I153T	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	182											0						TGGGAGAAGATAGACAAGCTT	0.512												
FAM188B	84182	broad.mit.edu	37	7	30931599	30931599	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:30931599C>T	uc003tbt.2	+	18	2330	c.2253C>T	c.(2251-2253)AAC>AAT	p.N751N	FAM188B_uc010kwe.2_Silent_p.N722N|AQP1_uc011kac.1_Intron|FAM188B_uc003tbu.2_Silent_p.N271N	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	751											0						TGAACTGGAACGGCTCAGACC	0.557												
KBTBD2	25948	broad.mit.edu	37	7	32910428	32910428	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:32910428A>G	uc003tdb.2	-	4	1060	c.401T>C	c.(400-402)GTA>GCA	p.V134A	AVL9_uc011kai.1_Intron	NM_015483	NP_056298	Q8IY47	KBTB2_HUMAN	kelch repeat and BTB (POZ) domain containing 2	134											0			GBM - Glioblastoma multiforme(11;0.0499)			CAACAATCGTACACAATTCTC	0.358												
KBTBD2	25948	broad.mit.edu	37	7	32914664	32914664	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:32914664A>G	uc003tdb.2	-	3	935	c.276T>C	c.(274-276)GGT>GGC	p.G92G	AVL9_uc011kai.1_Intron	NM_015483	NP_056298	Q8IY47	KBTB2_HUMAN	kelch repeat and BTB (POZ) domain containing 2	92	BTB.										0			GBM - Glioblastoma multiforme(11;0.0499)			TTGCCAAGTTACCCGTGTATG	0.343												
BBS9	27241	broad.mit.edu	37	7	33303903	33303903	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:33303903T>C	uc003tdn.1	+	7	1132	c.619T>C	c.(619-621)TAC>CAC	p.Y207H	BBS9_uc003tdo.1_Missense_Mutation_p.Y207H|BBS9_uc003tdp.1_Missense_Mutation_p.Y207H|BBS9_uc003tdq.1_Missense_Mutation_p.Y207H|BBS9_uc010kwn.1_RNA|BBS9_uc011kan.1_Missense_Mutation_p.Y207H|BBS9_uc011kao.1_Missense_Mutation_p.Y85H	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	207					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			TTCATACAGGTACCAGGTACT	0.244									Bardet-Biedl_syndrome			
ANLN	54443	broad.mit.edu	37	7	36462243	36462243	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:36462243T>C	uc003tff.2	+	14	2505	c.2301T>C	c.(2299-2301)ACT>ACC	p.T767T	ANLN_uc011kaz.1_Silent_p.T679T|ANLN_uc003tfg.2_Silent_p.T730T|ANLN_uc010kxe.2_Silent_p.T729T	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	767	Localization to the cleavage furrow.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						TTTACATAGCTGGGAAGAGAA	0.343												
ELMO1	9844	broad.mit.edu	37	7	37354480	37354480	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:37354480T>C	uc003tfk.1	-	4	473	c.166A>G	c.(166-168)AGT>GGT	p.S56G	ELMO1_uc010kxg.1_Missense_Mutation_p.S56G	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	56					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						AAGTTTGAACTATCGGCATGC	0.333												
AMPH	273	broad.mit.edu	37	7	38505843	38505843	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:38505843A>G	uc003tgu.2	-	8	665	c.596T>C	c.(595-597)GTT>GCT	p.V199A	AMPH_uc003tgv.2_Missense_Mutation_p.V199A|AMPH_uc003tgt.2_5'Flank	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	199	BAR.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						ATAAAATCCAACTCGTCTGCC	0.373												
VPS41	27072	broad.mit.edu	37	7	38765894	38765894	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:38765894A>G	uc003tgy.2	-	29	2543	c.2517T>C	c.(2515-2517)AGT>AGC	p.S839S	VPS41_uc003tgz.2_Silent_p.S814S|VPS41_uc010kxn.2_Silent_p.S750S|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	839	RING-type; atypical.				Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						GGTTCTTAGCACTGCAGATGT	0.358												
POU6F2	11281	broad.mit.edu	37	7	39500291	39500291	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:39500291G>A	uc003thb.1	+	9	1590	c.1548G>A	c.(1546-1548)GCG>GCA	p.A516A		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	516	POU-specific.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						AGGGCCCCGCGTACAGCCAGT	0.592												
POU6F2	11281	broad.mit.edu	37	7	39503921	39503921	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:39503921C>T	uc003thb.1	+	10	1754	c.1712C>T	c.(1711-1713)GCC>GTC	p.A571V		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	571	POU-specific.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CCTAAAAGTGCCCAGAAGATC	0.542												
INHBA	3624	broad.mit.edu	37	7	41729279	41729279	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:41729279T>C	uc003thq.2	-	2	1485	c.1250A>G	c.(1249-1251)AAC>AGC	p.N417S	INHBA_uc003thr.2_Missense_Mutation_p.N417S	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	417					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						CACGATCATGTTCTGAATGTC	0.473										TSP Lung(11;0.080)		
PSMA2	5683	broad.mit.edu	37	7	42962944	42962944	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:42962944A>G	uc003thy.2	-	5	484	c.436T>C	c.(436-438)TTA>CTA	p.L146L	C7orf25_uc010kxr.2_5'UTR|PSMA2_uc010kxt.2_Silent_p.L68L|PSMA2_uc003thz.1_Silent_p.L68L	NM_002787	NP_002778	P25787	PSA2_HUMAN	proteasome subunit alpha type 2	146					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|response to virus|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	protein binding|threonine-type endopeptidase activity			large_intestine(2)|ovary(1)	3						GACTGAAATAAATATGGTCGT	0.343												
CAMK2B	816	broad.mit.edu	37	7	44260472	44260472	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:44260472C>A	uc003tkq.2	-	21	1836	c.1626G>T	c.(1624-1626)ACG>ACT	p.T542T	CAMK2B_uc003tkp.2_Silent_p.T418T|CAMK2B_uc003tkx.2_Silent_p.T378T|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Silent_p.T394T|CAMK2B_uc003tks.2_Silent_p.T393T|CAMK2B_uc003tku.2_Silent_p.T379T|CAMK2B_uc003tkv.2_Silent_p.T355T|CAMK2B_uc003tkt.2_Silent_p.T394T|CAMK2B_uc003tkw.2_Silent_p.T325T|CAMK2B_uc010kyc.2_Silent_p.T418T|CAMK2B_uc003tkn.2_Silent_p.T175T	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	542					interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						TGAGCTGCTCCGTGGTCTTAA	0.652												
DDX56	54606	broad.mit.edu	37	7	44607803	44607803	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:44607803G>T	uc003tlg.2	-	12	2046	c.1403C>A	c.(1402-1404)CCT>CAT	p.P468H	DDX56_uc003tle.2_RNA|DDX56_uc003tlf.2_Missense_Mutation_p.P404H|DDX56_uc003tlh.2_RNA|DDX56_uc010kyg.2_Missense_Mutation_p.P428H	NM_019082	NP_061955	Q9NY93	DDX56_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	468					rRNA processing	nucleolus	ATP binding|ATP-dependent RNA helicase activity|identical protein binding|RNA binding			upper_aerodigestive_tract(1)	1						GAGGTCCCTAGGGTTGTCTTC	0.557												
ZMIZ2	83637	broad.mit.edu	37	7	44802571	44802571	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:44802571A>T	uc003tlr.2	+	12	1811	c.1688A>T	c.(1687-1689)CAC>CTC	p.H563L	ZMIZ2_uc003tlq.2_Missense_Mutation_p.H505L|ZMIZ2_uc003tls.2_Missense_Mutation_p.H537L|ZMIZ2_uc003tlt.2_Missense_Mutation_p.H186L|ZMIZ2_uc010kyj.2_Missense_Mutation_p.H85L|ZMIZ2_uc003tlu.2_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	563					positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						CCTGCTGAGCACTGCATCACC	0.627												
MYO1G	64005	broad.mit.edu	37	7	45005794	45005794	+	Missense_Mutation	SNP	C	C	T	rs145905005	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:45005794C>T	uc003tmh.2	-	16	2179	c.2035G>A	c.(2035-2037)GGG>AGG	p.G679R	MYO1G_uc003tmf.2_Missense_Mutation_p.G122R|MYO1G_uc003tmg.2_Missense_Mutation_p.G441R|MYO1G_uc010kym.2_Missense_Mutation_p.G564R|MYO1G_uc003tmi.1_3'UTR	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	679	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						CCCTGCAGCCCGTGCTGCTCC	0.632												
ADCY1	107	broad.mit.edu	37	7	45717522	45717522	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:45717522A>G	uc003tne.3	+	9	1678	c.1660A>G	c.(1660-1662)ACC>GCC	p.T554A		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	554	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	ATCTTTTTCTACCAACGTTGT	0.507												
IGFBP1	3484	broad.mit.edu	37	7	45930221	45930221	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:45930221G>A	uc003tnp.2	+	2	717	c.424G>A	c.(424-426)GCC>ACC	p.A142T	IGFBP1_uc003tno.3_Missense_Mutation_p.A142T|IGFBP1_uc010kyn.2_Missense_Mutation_p.A142T	NM_000596	NP_000587	P08833	IBP1_HUMAN	insulin-like growth factor binding protein 1	142						extracellular space	insulin-like growth factor binding			lung(1)	1						CCATCTGATGGCCCCTTCTGA	0.512											OREG0018048	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
TNS3	64759	broad.mit.edu	37	7	47479116	47479116	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:47479116A>G	uc003tnv.2	-	6	486	c.119T>C	c.(118-120)ATG>ACG	p.M40T	TNS3_uc003tnw.2_Missense_Mutation_p.M40T|TNS3_uc010kyo.1_Missense_Mutation_p.M40T	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	40	Phosphatase tensin-type.					focal adhesion	protein binding			ovary(4)	4						GGACTTGAGCATGCGCGTGAC	0.617												
HUS1	3364	broad.mit.edu	37	7	48018405	48018405	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:48018405T>C	uc003tod.1	-	2	191	c.61A>G	c.(61-63)AAC>GAC	p.N21D	HUS1_uc003toe.1_Missense_Mutation_p.N21D|HUS1_uc011kce.1_RNA	NM_004507	NP_004498	O60921	HUS1_HUMAN	HUS1 checkpoint protein	21					DNA damage checkpoint|DNA replication	Golgi apparatus|nucleolus|nucleoplasm	protein binding			ovary(2)|lung(2)|kidney(1)	5		Breast(660;0.00139)				GCTATCATGTTACTGATTCCT	0.403								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes				
ABCA13	154664	broad.mit.edu	37	7	48313721	48313721	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:48313721T>C	uc003toq.2	+	17	4483	c.4458T>C	c.(4456-4458)TTT>TTC	p.F1486F	ABCA13_uc010kyr.2_Silent_p.F989F	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1486					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AACCTAAATTTGAGATTTTAT	0.299												
IKZF1	10320	broad.mit.edu	37	7	50467961	50467961	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:50467961A>G	uc003tow.3	+	9	1364	c.1196A>G	c.(1195-1197)GAC>GGC	p.D399G	IKZF1_uc003tox.3_Missense_Mutation_p.D357G|IKZF1_uc003toy.3_Missense_Mutation_p.D357G|IKZF1_uc011kck.1_Missense_Mutation_p.D312G|IKZF1_uc003toz.3_Missense_Mutation_p.D369G|IKZF1_uc010kyx.2_Missense_Mutation_p.D139G|IKZF1_uc003tpa.3_Missense_Mutation_p.D141G	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	399					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding			haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				GACTCCACGGACACCGAGAGC	0.657			D		ALL							
COBL	23242	broad.mit.edu	37	7	51095667	51095667	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:51095667G>A	uc003tpr.3	-	10	3311	c.3126C>T	c.(3124-3126)CGC>CGT	p.R1042R	COBL_uc003tps.2_Silent_p.R1099R|COBL_uc011kcl.1_Silent_p.R1042R|COBL_uc003tpp.3_Silent_p.R828R|COBL_uc003tpq.3_Silent_p.R983R|COBL_uc003tpo.3_Silent_p.R584R	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	1042										skin(3)|ovary(2)	5	Glioma(55;0.08)					GGCCTGGGGCGCGCACAGAGC	0.607												
COBL	23242	broad.mit.edu	37	7	51096316	51096316	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:51096316C>T	uc003tpr.3	-	10	2662	c.2477G>A	c.(2476-2478)CGG>CAG	p.R826Q	COBL_uc003tps.2_Missense_Mutation_p.R883Q|COBL_uc011kcl.1_Missense_Mutation_p.R826Q|COBL_uc003tpp.3_Missense_Mutation_p.R612Q|COBL_uc003tpq.3_Missense_Mutation_p.R767Q|COBL_uc003tpo.3_Missense_Mutation_p.R368Q	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	826										skin(3)|ovary(2)	5	Glioma(55;0.08)					TAGGGGGTTCCGGCCCTCATG	0.617												
POM121L12	285877	broad.mit.edu	37	7	53103642	53103642	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:53103642T>C	uc003tpz.2	+	1	294	c.278T>C	c.(277-279)GTC>GCC	p.V93A		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	93											0						CAGCGGGTGGTCTCCGAGGGC	0.697												
EGFR	1956	broad.mit.edu	37	7	55220349	55220349	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:55220349G>A	uc003tqk.2	+	6	985	c.739G>A	c.(739-741)GAC>AAC	p.D247N	EGFR_uc003tqh.2_Missense_Mutation_p.D247N|EGFR_uc003tqi.2_Missense_Mutation_p.D247N|EGFR_uc003tqj.2_Missense_Mutation_p.D247N|EGFR_uc010kzg.1_Missense_Mutation_p.D202N|EGFR_uc011kco.1_Missense_Mutation_p.D194N|EGFR_uc003tql.1_RNA	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	247	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	CCGGGAGAGCGACTGCCTGGT	0.682		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)		
CCT6A	908	broad.mit.edu	37	7	56123451	56123451	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:56123451T>C	uc003trl.1	+	4	635	c.471T>C	c.(469-471)CGT>CGC	p.R157R	PSPH_uc003trj.2_Intron|CCT6A_uc003trm.1_Silent_p.R112R|CCT6A_uc011kcu.1_Silent_p.R126R	NM_001762	NP_001753	P40227	TCPZ_HUMAN	chaperonin containing TCP1, subunit 6A isoform	157					'de novo' posttranslational protein folding	cytosol	ATP binding|unfolded protein binding			upper_aerodigestive_tract(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CATCTCTTCGTACTAAAGTTC	0.373												
CCT6A	908	broad.mit.edu	37	7	56128609	56128609	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:56128609T>C	uc003trl.1	+	11	1487	c.1323T>C	c.(1321-1323)GCT>GCC	p.A441A	PSPH_uc003trj.2_Intron|CCT6A_uc003trm.1_Silent_p.A396A|CCT6A_uc011kcu.1_Silent_p.A410A	NM_001762	NP_001753	P40227	TCPZ_HUMAN	chaperonin containing TCP1, subunit 6A isoform	441					'de novo' posttranslational protein folding	cytosol	ATP binding|unfolded protein binding			upper_aerodigestive_tract(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			AAGCATTTGCTGATGCATTGC	0.448												
PHKG1	5260	broad.mit.edu	37	7	56148962	56148962	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:56148962G>A	uc003trz.1	-	10	1144	c.949C>T	c.(949-951)CGG>TGG	p.R317W	PSPH_uc003trj.2_Intron|PHKG1_uc003try.1_Missense_Mutation_p.R211W|PHKG1_uc011kdb.1_Missense_Mutation_p.R349W|PHKG1_uc011kdc.1_Missense_Mutation_p.R308W|PHKG1_uc011kdd.1_Missense_Mutation_p.R263W	NM_006213	NP_006204	Q16816	PHKG1_HUMAN	phosphorylase kinase gamma subunit 1	317	Calmodulin-binding (domain-N).				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	ATP binding|calmodulin binding|phosphorylase kinase activity			large_intestine(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TAGTAGATCCGCACTGAAGCC	0.682												
ZNF117	51351	broad.mit.edu	37	7	64439903	64439903	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:64439903A>G	uc003ttr.2	-	4	1331	c.46T>C	c.(46-48)TAT>CAT	p.Y16H		NM_015852	NP_056936	Q03924	ZN117_HUMAN	zinc finger protein 117	16						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Lung NSC(55;0.0295)|all_lung(88;0.0691)				TGGGCAAAATAATAAAACATA	0.323												
ZNF92	168374	broad.mit.edu	37	7	64863286	64863286	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:64863286C>T	uc003ttz.2	+	4	402	c.259C>T	c.(259-261)CCA>TCA	p.P87S	ZNF92_uc003tua.2_Missense_Mutation_p.P18S|ZNF92_uc010kzu.2_Missense_Mutation_p.P55S|ZNF92_uc003tub.2_Missense_Mutation_p.P11S	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	87						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				AGATGTTTGGCCAGAGCACAG	0.303												
KCTD7	154881	broad.mit.edu	37	7	66104004	66104004	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:66104004G>A	uc003tve.2	+	4	817	c.655G>A	c.(655-657)GGG>AGG	p.G219R	RABGEF1_uc003tvf.2_Intron|KCTD7_uc003tvd.3_Missense_Mutation_p.G219R	NM_153033	NP_694578	Q96MP8	KCTD7_HUMAN	potassium channel tetramerisation domain	219						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)	3						TGAGAGTGACGGGCAGCTTTT	0.562												
C7orf42	55069	broad.mit.edu	37	7	66413599	66413599	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:66413599G>A	uc003tvk.2	+	4	778	c.514G>A	c.(514-516)GCC>ACC	p.A172T	C7orf42_uc010lah.2_RNA|C7orf42_uc003tvl.2_Missense_Mutation_p.A172T	NM_017994	NP_060464	Q9NWD8	CG042_HUMAN	hypothetical protein LOC55069	172						integral to membrane				ovary(1)	1						AGATGACTGCGCCCTCCACGG	0.547												
TYW1	55253	broad.mit.edu	37	7	66660204	66660204	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:66660204C>A	uc003tvn.2	+	15	2006	c.1857C>A	c.(1855-1857)GCC>GCA	p.A619A	TYW1_uc010lai.2_RNA|TYW1_uc011kef.1_Silent_p.A233A|PMS2L4_uc003tvo.2_Intron	NM_018264	NP_060734	Q9NV66	TYW1_HUMAN	radical S-adenosyl methionine and flavodoxin	619					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity			skin(1)	1		Lung NSC(55;0.0846)|all_lung(88;0.183)				TTACCATGGCCCACGTGCCCT	0.483												
AUTS2	26053	broad.mit.edu	37	7	69064829	69064829	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:69064829T>C	uc003tvw.3	+	1	933	c.190T>C	c.(190-192)TCC>CCC	p.S64P	AUTS2_uc003tvv.3_Missense_Mutation_p.S64P|AUTS2_uc003tvx.3_Missense_Mutation_p.S64P	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	64										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		GAAGCCCCCGTCCTCCGCCCC	0.483												
AUTS2	26053	broad.mit.edu	37	7	69064944	69064944	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:69064944T>C	uc003tvw.3	+	1	1048	c.305T>C	c.(304-306)CTG>CCG	p.L102P	AUTS2_uc003tvv.3_Missense_Mutation_p.L102P|AUTS2_uc003tvx.3_Missense_Mutation_p.L102P	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	102										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		TTTGAAGCGCTGGAGGTAAGG	0.637												
WBSCR17	64409	broad.mit.edu	37	7	70886037	70886037	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:70886037A>G	uc003tvy.2	+	5	908	c.908A>G	c.(907-909)TAC>TGC	p.Y303C	WBSCR17_uc003tvz.2_Missense_Mutation_p.Y2C	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	303	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TGGTGCATGTACATCAGCCCC	0.592												
BAZ1B	9031	broad.mit.edu	37	7	72892413	72892413	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:72892413T>C	uc003tyc.2	-	7	1723	c.1378A>G	c.(1378-1380)ACA>GCA	p.T460A		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	460	Lys-rich.				ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				GTCCTAGGTGTACCCCCAGAA	0.478												
MLXIPL	51085	broad.mit.edu	37	7	73030508	73030508	+	Splice_Site	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:73030508C>T	uc003tyn.1	-	2	342	c.294_splice	c.e2-1	p.S98_splice	MLXIPL_uc003tyk.1_Splice_Site_p.S98_splice|MLXIPL_uc003tyl.1_Splice_Site_p.S98_splice|MLXIPL_uc003tym.1_Splice_Site_p.S98_splice|MLXIPL_uc003tyo.1_Splice_Site|MLXIPL_uc003typ.1_Splice_Site_p.S98_splice	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14						anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				CAGCTTGCCACTGTCAAAGGG	0.542												
RFC2	5982	broad.mit.edu	37	7	73646517	73646517	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:73646517C>T	uc003uaj.2	-	11	1009	c.984G>A	c.(982-984)GCG>GCA	p.A328A	RFC2_uc011kfa.1_RNA|RFC2_uc003uak.2_Silent_p.A294A|RFC2_uc010lbp.2_Silent_p.A257A|RFC2_uc003ual.2_Silent_p.A227A	NM_181471	NP_852136	P35250	RFC2_HUMAN	replication factor C 2 isoform 1	328					cell cycle checkpoint|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|protein binding			liver(1)|central_nervous_system(1)	2						TCACTCCTTCCGCTATTTTCA	0.433												
POMZP3	22932	broad.mit.edu	37	7	76254925	76254925	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:76254925T>C	uc003uft.2	-	3	888	c.141A>G	c.(139-141)GTA>GTG	p.V47V	uc003ufs.1_Intron|POMZP3_uc003ufu.2_Silent_p.V47V|POMZP3_uc003ufv.2_RNA|POMZP3_uc011kgm.1_RNA	NM_012230	NP_036362	Q6PJE2	POZP3_HUMAN	POMZP3 fusion protein isoform 1	47											0		Myeloproliferative disorder(862;0.204)				GGGCACTCAGTACAGTCTCCT	0.448												
POMZP3	22932	broad.mit.edu	37	7	76254929	76254929	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:76254929G>C	uc003uft.2	-	3	884	c.137C>G	c.(136-138)ACT>AGT	p.T46S	uc003ufs.1_Intron|POMZP3_uc003ufu.2_Missense_Mutation_p.T46S|POMZP3_uc003ufv.2_RNA|POMZP3_uc011kgm.1_RNA	NM_012230	NP_036362	Q6PJE2	POZP3_HUMAN	POMZP3 fusion protein isoform 1	46											0		Myeloproliferative disorder(862;0.204)				ACTCAGTACAGTCTCCTTTGC	0.438												
CCDC146	57639	broad.mit.edu	37	7	76883847	76883847	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:76883847A>G	uc003uga.2	+	5	601	c.474A>G	c.(472-474)ATA>ATG	p.I158M		NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	158										ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				AAATCATCATAGTAAAAGAAT	0.269												
PION	54103	broad.mit.edu	37	7	76941475	76941475	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:76941475A>G	uc003ugf.2	-	29	2395	c.2316T>C	c.(2314-2316)AGT>AGC	p.S772S	PION_uc011kgo.1_Silent_p.S93S|PION_uc003ugd.2_Silent_p.S166S	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	772					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						TGATGTTAGAACTCATAGGAT	0.373												
PION	54103	broad.mit.edu	37	7	77035409	77035409	+	Silent	SNP	G	G	A	rs144142632	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:77035409G>A	uc003ugf.2	-	2	202	c.123C>T	c.(121-123)AAC>AAT	p.N41N	PION_uc003ugg.1_Translation_Start_Site	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	41					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						TCTCATAATCGTTTTCTAAAA	0.214												
RSBN1L	222194	broad.mit.edu	37	7	77402579	77402579	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:77402579C>T	uc010ldt.1	+	6	1785	c.1741C>T	c.(1741-1743)CGA>TGA	p.R581*	RSBN1L_uc003ugm.2_Nonsense_Mutation_p.R363*	NM_198467	NP_940869	Q6PCB5	RSBNL_HUMAN	round spermatid basic protein 1-like	581						nucleus				ovary(1)	1						AGGTTTTGAACGACAGACTAC	0.433												
MAGI2	9863	broad.mit.edu	37	7	78119138	78119138	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:78119138A>G	uc003ugx.2	-	6	1239	c.985T>C	c.(985-987)TCA>CCA	p.S329P	MAGI2_uc003ugy.2_Missense_Mutation_p.S329P|MAGI2_uc010ldx.1_5'UTR|MAGI2_uc010ldy.1_5'UTR|MAGI2_uc011kgr.1_Missense_Mutation_p.S161P|MAGI2_uc011kgs.1_Missense_Mutation_p.S166P	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	329	WW 1.|Interaction with DDN.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TCCAGCCATGATGTTGTCTTT	0.368												
HGF	3082	broad.mit.edu	37	7	81372722	81372723	+	Missense_Mutation	DNP	CA	CA	TG			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:81372722_81372723CA>TG	uc003uhl.2	-	7	976_977	c.811_812TG>CA	c.(811-813)TGC>CAC	p.C271H	HGF_uc003uhm.2_Missense_Mutation_p.C266H|HGF_uc003uhn.1_Missense_Mutation_p.C271H|HGF_uc003uho.1_Missense_Mutation_p.C266H	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	271	Kringle 2.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						AAGAGTATAGCACCATGGCCTC	0.47												
HGF	3082	broad.mit.edu	37	7	81392115	81392115	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:81392115A>T	uc003uhl.2	-	2	327	c.162T>A	c.(160-162)GAT>GAA	p.D54E	HGF_uc003uhm.2_Missense_Mutation_p.D54E|HGF_uc003uhn.1_Missense_Mutation_p.D54E|HGF_uc003uho.1_Missense_Mutation_p.D54E|HGF_uc003uhp.2_Missense_Mutation_p.D54E	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	54	PAN.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TCAGTGCTGGATCTATTTTGA	0.303												
CACNA2D1	781	broad.mit.edu	37	7	81611899	81611899	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:81611899T>C	uc003uhr.1	-	24	2195	c.1939A>G	c.(1939-1941)ACA>GCA	p.T647A		NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	659	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	GCTATGAATGTATAGCCAGAT	0.368												
CACNA2D1	781	broad.mit.edu	37	7	81643727	81643727	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:81643727A>G	uc003uhr.1	-	13	1468	c.1212T>C	c.(1210-1212)TGT>TGC	p.C404C	uc003uhs.1_Intron	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	404	Extracellular (Potential).|VWFA.					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	CTTTGTTTTCACAGGCCATCC	0.313												
PCLO	27445	broad.mit.edu	37	7	82453563	82453563	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:82453563T>C	uc003uhx.2	-	19	14874	c.14585A>G	c.(14584-14586)GAC>GGC	p.D4862G	PCLO_uc003uhv.2_Missense_Mutation_p.D4862G|PCLO_uc003uht.1_Missense_Mutation_p.D304G|PCLO_uc003uhu.1_Missense_Mutation_p.D283G	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4724	Ser-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTTTGATGGGTCAGGGAAGAT	0.388												
PCLO	27445	broad.mit.edu	37	7	82584247	82584247	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:82584247T>C	uc003uhx.2	-	5	6311	c.6022A>G	c.(6022-6024)ACA>GCA	p.T2008A	PCLO_uc003uhv.2_Missense_Mutation_p.T2008A	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1939					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGAGGTCTGTAATTTTCTGC	0.363												
PCLO	27445	broad.mit.edu	37	7	82585531	82585531	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:82585531T>C	uc003uhx.2	-	5	5027	c.4738A>G	c.(4738-4740)AAC>GAC	p.N1580D	PCLO_uc003uhv.2_Missense_Mutation_p.N1580D	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1511					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGAGCTGGTTTCTGATGAAC	0.433												
SEMA3E	9723	broad.mit.edu	37	7	83095872	83095872	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:83095872T>A	uc003uhy.1	-	4	848	c.382A>T	c.(382-384)ACA>TCA	p.T128S		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	128	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				AGAAGGTGTGTCCTGTTATAG	0.398												
SEMA3D	223117	broad.mit.edu	37	7	84649547	84649547	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:84649547A>G	uc003uic.2	-	12	1543	c.1503_splice	c.e12+1	p.K501_splice	SEMA3D_uc010led.2_Splice_Site_p.K501_splice|SEMA3D_uc003uib.2_Splice_Site_p.K140_splice	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor						cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						ACTGAGTCTTACCTTGAATAT	0.413												
GRM3	2913	broad.mit.edu	37	7	86469092	86469092	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:86469092C>T	uc003uid.2	+	4	3361	c.2262C>T	c.(2260-2262)TAC>TAT	p.Y754Y	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Silent_p.Y626Y|GRM3_uc010leh.2_Silent_p.Y346Y	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	754	Helical; Name=5; (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GCACTGTGTACGCCTTCAAAA	0.448												
DMTF1	9988	broad.mit.edu	37	7	86813838	86813838	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:86813838C>T	uc003uih.2	+	11	1272	c.946C>T	c.(946-948)CGC>TGC	p.R316C	DMTF1_uc003uii.2_Missense_Mutation_p.R50C|DMTF1_uc003uij.2_Missense_Mutation_p.R50C|DMTF1_uc011khb.1_Missense_Mutation_p.R228C|DMTF1_uc003uik.2_RNA|DMTF1_uc003uil.2_Missense_Mutation_p.R316C|DMTF1_uc003uin.2_Missense_Mutation_p.R50C	NM_001142327	NP_001135799	Q9Y222	DMTF1_HUMAN	cyclin D binding myb-like transcription factor 1	316	H-T-H motif (By similarity).|Interaction with CCND1, CCND2 and CCND3 (By similarity).|HTH myb-type.|Required for DNA-binding (By similarity).				cell cycle	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(14;0.0058)					AGTCGGTACCCGCTCAGAAAA	0.488												
DMTF1	9988	broad.mit.edu	37	7	86817425	86817425	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:86817425A>G	uc003uih.2	+	13	1545	c.1219A>G	c.(1219-1221)AAA>GAA	p.K407E	DMTF1_uc003uii.2_Missense_Mutation_p.K141E|DMTF1_uc003uij.2_Missense_Mutation_p.K141E|DMTF1_uc011khb.1_Missense_Mutation_p.K319E|DMTF1_uc003uik.2_RNA|DMTF1_uc003uil.2_Missense_Mutation_p.K407E|DMTF1_uc003uin.2_Missense_Mutation_p.K141E	NM_001142327	NP_001135799	Q9Y222	DMTF1_HUMAN	cyclin D binding myb-like transcription factor 1	407	Interaction with CCND1, CCND2 and CCND3 (By similarity).|Required for DNA-binding (By similarity).				cell cycle	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(14;0.0058)					AAAAGGTCTTAAACAGTTACA	0.423												
CROT	54677	broad.mit.edu	37	7	86990750	86990750	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:86990750A>G	uc003uit.2	+	5	530	c.285A>G	c.(283-285)ATA>ATG	p.I95M	CROT_uc003uiu.2_Missense_Mutation_p.I123M	NM_021151	NP_066974	Q9UKG9	OCTC_HUMAN	peroxisomal carnitine O-octanoyltransferase	95					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|transport	peroxisomal matrix	carnitine O-octanoyltransferase activity			ovary(2)|lung(1)	3	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)				L-Carnitine(DB00583)	ATGTTCGTATACCATCACAAT	0.403												
ABCB4	5244	broad.mit.edu	37	7	87101978	87101978	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:87101978T>C	uc003uiv.1	-	3	170	c.94A>G	c.(94-96)AAA>GAA	p.K32E	ABCB4_uc003uiw.1_Missense_Mutation_p.K32E|ABCB4_uc003uix.1_Missense_Mutation_p.K32E|ABCB4_uc003uiy.2_Missense_Mutation_p.K32E	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	32	Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					TTCGTTTTTTTCCTTTTTTGT	0.254												
ZNF804B	219578	broad.mit.edu	37	7	88964603	88964603	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:88964603A>G	uc011khi.1	+	4	2845	c.2307A>G	c.(2305-2307)ATA>ATG	p.I769M		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	769						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CTGATGATATAACAAAGAGCA	0.378										HNSCC(36;0.09)		
FZD1	8321	broad.mit.edu	37	7	90895582	90895582	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:90895582C>G	uc003ula.2	+	1	1800	c.1387C>G	c.(1387-1389)CTG>GTG	p.L463V		NM_003505	NP_003496	Q9UP38	FZD1_HUMAN	frizzled 1 precursor	463	Helical; Name=4; (Potential).				autocrine signaling|axonogenesis|brain development|canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|embryo development|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|lung alveolus development|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to drug|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cell surface|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|receptor binding|Wnt receptor activity|Wnt-protein binding				0	all_cancers(62;3.1e-10)|all_epithelial(64;1.66e-08)|Breast(17;0.000635)|Lung NSC(181;0.153)|all_lung(186;0.154)|all_hematologic(106;0.215)		STAD - Stomach adenocarcinoma(171;0.0134)			CATCACCATCCTGGCGCTGGG	0.647												
FZD1	8321	broad.mit.edu	37	7	90895892	90895892	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:90895892A>C	uc003ula.2	+	1	2110	c.1697A>C	c.(1696-1698)GAA>GCA	p.E566A		NM_003505	NP_003496	Q9UP38	FZD1_HUMAN	frizzled 1 precursor	566	Extracellular (Potential).				autocrine signaling|axonogenesis|brain development|canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|embryo development|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|lung alveolus development|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to drug|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cell surface|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|receptor binding|Wnt receptor activity|Wnt-protein binding				0	all_cancers(62;3.1e-10)|all_epithelial(64;1.66e-08)|Breast(17;0.000635)|Lung NSC(181;0.153)|all_lung(186;0.154)|all_hematologic(106;0.215)		STAD - Stomach adenocarcinoma(171;0.0134)			GACCAGTGGGAACGCAGCTGG	0.672												
AKAP9	10142	broad.mit.edu	37	7	91630524	91630524	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:91630524A>G	uc003ulg.2	+	8	1518	c.1293A>G	c.(1291-1293)GAA>GAG	p.E431E	AKAP9_uc003ule.2_Silent_p.E443E|AKAP9_uc003ulf.2_Silent_p.E431E|AKAP9_uc003uli.2_Silent_p.E56E	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	443	Glu-rich.|Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GAAAGTTAGAACAACTCCGGG	0.403			T	BRAF	papillary thyroid							
CYP51A1	1595	broad.mit.edu	37	7	91747922	91747922	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:91747922T>A	uc003ulm.3	-	8	1256	c.1094A>T	c.(1093-1095)GAT>GTT	p.D365V	CYP51A1_uc011khn.1_Missense_Mutation_p.D260V|CYP51A1_uc003uln.3_Missense_Mutation_p.D302V	NM_000786	NP_000777	Q16850	CP51A_HUMAN	cytochrome P450, family 51, subfamily A,	359					cholesterol biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|sterol 14-demethylase activity				0	all_cancers(62;2.16e-09)|all_epithelial(64;3.86e-08)|Breast(17;0.00206)|all_lung(186;0.169)|all_hematologic(106;0.215)|Lung NSC(181;0.227)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)		Fluconazole(DB00196)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Miconazole(DB01110)|Terconazole(DB00251)	TAAATTTAGATCCTTGAGCTA	0.323												
CDK6	1021	broad.mit.edu	37	7	92247394	92247394	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:92247394G>A	uc011khw.1	-	7	1238	c.826C>T	c.(826-828)CTA>TTA	p.L276L	CDK6_uc010lez.2_Silent_p.L276L	NM_001259	NP_001250	Q00534	CDK6_HUMAN	cyclin-dependent kinase 6	276	Protein kinase.				cell dedifferentiation|cell division|G1 phase of mitotic cell cycle|gliogenesis|negative regulation of cell cycle|negative regulation of epithelial cell proliferation|negative regulation of osteoblast differentiation|positive regulation of cell-matrix adhesion|positive regulation of fibroblast proliferation|regulation of erythrocyte differentiation|regulation of gene expression|response to virus	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleus|ruffle	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			central_nervous_system(1)|skin(1)	2	all_cancers(62;8.72e-12)|all_epithelial(64;3.65e-10)|Breast(17;0.000675)|all_lung(186;0.0392)|Lung NSC(181;0.053)|all_neural(327;0.219)|all_hematologic(106;0.237)		STAD - Stomach adenocarcinoma(4;6.16e-07)|GBM - Glioblastoma multiforme(5;1.2e-06)|all cancers(6;3.1e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			ACCAGAAGTAGGTCTTTGCCT	0.473			T	MLLT10	ALL							
CDK6	1021	broad.mit.edu	37	7	92462455	92462455	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:92462455C>T	uc011khw.1	-	2	595	c.183G>A	c.(181-183)GAG>GAA	p.E61E	CDK6_uc010lez.2_Silent_p.E61E	NM_001259	NP_001250	Q00534	CDK6_HUMAN	cyclin-dependent kinase 6	61	Protein kinase.				cell dedifferentiation|cell division|G1 phase of mitotic cell cycle|gliogenesis|negative regulation of cell cycle|negative regulation of epithelial cell proliferation|negative regulation of osteoblast differentiation|positive regulation of cell-matrix adhesion|positive regulation of fibroblast proliferation|regulation of erythrocyte differentiation|regulation of gene expression|response to virus	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleus|ruffle	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			central_nervous_system(1)|skin(1)	2	all_cancers(62;8.72e-12)|all_epithelial(64;3.65e-10)|Breast(17;0.000675)|all_lung(186;0.0392)|Lung NSC(181;0.053)|all_neural(327;0.219)|all_hematologic(106;0.237)		STAD - Stomach adenocarcinoma(4;6.16e-07)|GBM - Glioblastoma multiforme(5;1.2e-06)|all cancers(6;3.1e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			GCACCGCCACCTCGCGGATGG	0.701			T	MLLT10	ALL							
SAMD9L	219285	broad.mit.edu	37	7	92760647	92760647	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:92760647T>C	uc003umh.1	-	5	5854	c.4638A>G	c.(4636-4638)ATA>ATG	p.I1546M	SAMD9L_uc003umj.1_Missense_Mutation_p.I1546M|SAMD9L_uc003umi.1_Missense_Mutation_p.I1546M|SAMD9L_uc010lfb.1_Missense_Mutation_p.I1546M|SAMD9L_uc003umk.1_Missense_Mutation_p.I1546M|SAMD9L_uc010lfc.1_Missense_Mutation_p.I1546M|SAMD9L_uc010lfd.1_Missense_Mutation_p.I1546M|SAMD9L_uc011khx.1_3'UTR	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1546										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			ATATTACTGGTATTTTTATTT	0.403												
COL1A2	1278	broad.mit.edu	37	7	94056542	94056542	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:94056542A>G	uc003ung.1	+	48	3673	c.3202A>G	c.(3202-3204)ACT>GCT	p.T1068A	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	1068					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	AGATGGTCGCACTGGACATCC	0.537										HNSCC(75;0.22)		
CASD1	64921	broad.mit.edu	37	7	94174901	94174901	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:94174901A>G	uc003uni.3	+	12	1748	c.1521A>G	c.(1519-1521)GTA>GTG	p.V507V	CASD1_uc003unj.3_Silent_p.V507V	NM_022900	NP_075051	Q96PB1	CASD1_HUMAN	CAS1 domain containing 1 precursor	507	Helical; (Potential).					integral to membrane				ovary(2)	2	all_cancers(62;6.71e-10)|all_epithelial(64;5e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			TATGTATAGTAATGGATCGAC	0.338												
PEG10	23089	broad.mit.edu	37	7	94293419	94293419	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:94293419A>G	uc011kie.1	+	2	996	c.779A>G	c.(778-780)TAC>TGC	p.Y260C		NM_001040152	NP_001035242	Q86TG7	PEG10_HUMAN	paternally expressed 10 isoform RF1	184	Necessary for interaction with ALK1.				apoptosis|cell differentiation|negative regulation of transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			GTCATCGACTACTCCAATGCT	0.547												
PON2	5445	broad.mit.edu	37	7	95034793	95034793	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:95034793C>T	uc003unv.2	-	9	1035	c.914G>A	c.(913-915)CGC>CAC	p.R305H	PON2_uc003unu.2_Missense_Mutation_p.R293H|PON2_uc010lfk.2_RNA|PON2_uc003unw.2_Missense_Mutation_p.R218H	NM_000305	NP_000296	Q15165	PON2_HUMAN	paraoxonase 2 isoform 1	305					aromatic compound catabolic process	extracellular region|plasma membrane	arylesterase activity|identical protein binding|metal ion binding				0	all_cancers(62;9.35e-11)|all_epithelial(64;3.37e-09)		STAD - Stomach adenocarcinoma(171;0.0151)			GTTCTGGATGCGGAGAACCTA	0.433												
DYNC1I1	1780	broad.mit.edu	37	7	95665019	95665019	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:95665019T>C	uc003uoc.3	+	13	1647	c.1370T>C	c.(1369-1371)GTT>GCT	p.V457A	DYNC1I1_uc003uod.3_Missense_Mutation_p.V440A|DYNC1I1_uc003uob.2_Missense_Mutation_p.V420A|DYNC1I1_uc003uoe.3_Missense_Mutation_p.V437A|DYNC1I1_uc010lfl.2_Missense_Mutation_p.V446A	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	457	WD 4.				vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			AACTTCGTGGTTGGCAGTGAG	0.463												
SLC25A13	10165	broad.mit.edu	37	7	95750584	95750584	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:95750584C>A	uc003uof.3	-	18	2138	c.1947G>T	c.(1945-1947)GGG>GGT	p.G649G	SLC25A13_uc003uog.3_Silent_p.G650G|SLC25A13_uc011kik.1_Silent_p.G541G	NM_014251	NP_055066	Q9UJS0	CMC2_HUMAN	solute carrier family 25, member 13 isoform 2	649					ATP biosynthetic process|gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to plasma membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity			central_nervous_system(3)|skin(1)	4	all_cancers(62;7.75e-08)|all_epithelial(64;1.16e-07)		STAD - Stomach adenocarcinoma(171;0.194)		L-Aspartic Acid(DB00128)	TGTTTTCAATCCCTGCAAATG	0.493												
LMTK2	22853	broad.mit.edu	37	7	97821801	97821801	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:97821801A>G	uc003upd.1	+	11	2317	c.2024A>G	c.(2023-2025)AAC>AGC	p.N675S		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	675					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					AGTTTGGATAACCCCAAAGAG	0.413												
TRRAP	8295	broad.mit.edu	37	7	98506451	98506451	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:98506451A>G	uc003upp.2	+	14	1425	c.1216A>G	c.(1216-1218)ATC>GTC	p.I406V	TRRAP_uc011kis.1_Missense_Mutation_p.I406V|TRRAP_uc003upr.2_Missense_Mutation_p.I98V	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	406					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CGCCAAGAACATCGACGATGA	0.642												
PDAP1	11333	broad.mit.edu	37	7	99002549	99002549	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:99002549G>A	uc003uqe.2	-	2	162	c.41C>T	c.(40-42)GCG>GTG	p.A14V		NM_014891	NP_055706	Q13442	HAP28_HUMAN	PDGFA associated protein 1	14					cell proliferation|signal transduction						0	all_cancers(62;3.49e-09)|all_epithelial(64;2.57e-10)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)		Becaplermin(DB00102)	ATACTGCCTCGCCCGGCCTTT	0.632												
ZNF789	285989	broad.mit.edu	37	7	99084556	99084556	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:99084556G>A	uc003uqq.1	+	5	942	c.723G>A	c.(721-723)CGG>CGA	p.R241R	ZNF789_uc010lfw.1_Silent_p.R146R|ZNF789_uc003uqr.1_Silent_p.R183R	NM_213603	NP_998768	Q5FWF6	ZN789_HUMAN	zinc finger protein 789 isoform 1	241	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					TCAGACAGCGGTCAGCTCTTA	0.443												
ZNF394	84124	broad.mit.edu	37	7	99091161	99091161	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:99091161T>C	uc003uqs.2	-	3	1838	c.1677A>G	c.(1675-1677)TCA>TCG	p.S559S	ZNF394_uc003uqt.2_Silent_p.S352S	NM_032164	NP_115540	Q53GI3	ZN394_HUMAN	zinc finger protein 394	559					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					attataggcgtgagccaccac	0.149												
CYP3A43	64816	broad.mit.edu	37	7	99441821	99441821	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:99441821A>G	uc003urx.1	+	4	377	c.274A>G	c.(274-276)ACA>GCA	p.T92A	CYP3A43_uc003ury.1_Missense_Mutation_p.T92A|CYP3A43_uc003urz.1_Missense_Mutation_p.T92A|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Intron|CYP3A43_uc003usb.1_Intron	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	92			Missing (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	CATGATCAAAACAGTGTTAGT	0.378												
TAF6	6878	broad.mit.edu	37	7	99707849	99707849	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:99707849C>T	uc003uti.2	-	11	1213	c.1132G>A	c.(1132-1134)GCA>ACA	p.A378T	AP4M1_uc003utd.2_3'UTR|TAF6_uc003utg.2_Missense_Mutation_p.A300T|TAF6_uc003uth.2_Missense_Mutation_p.A435T|TAF6_uc003utk.2_Missense_Mutation_p.A378T|TAF6_uc011kji.1_Missense_Mutation_p.A415T|TAF6_uc003utj.2_Missense_Mutation_p.A368T|TAF6_uc003utl.2_Missense_Mutation_p.A378T|TAF6_uc003utm.2_Missense_Mutation_p.A378T|TAF6_uc003utn.1_RNA	NM_139315	NP_647476	P49848	TAF6_HUMAN	TBP-associated factor 6 isoform alpha	378					negative regulation of cell cycle|negative regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GCCAAGCCTGCGATGGAGCCA	0.537												
STAG3	10734	broad.mit.edu	37	7	99779803	99779803	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:99779803G>A	uc003utx.1	+	3	362	c.207G>A	c.(205-207)CCG>CCA	p.P69P	STAG3_uc010lgs.1_5'UTR|STAG3_uc011kjk.1_Silent_p.P69P	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	69					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AACGACCACCGAAAACAACAC	0.358												
ZAN	7455	broad.mit.edu	37	7	100345207	100345207	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:100345207A>G	uc003uwj.2	+	9	1131	c.966A>G	c.(964-966)CAA>CAG	p.Q322Q	ZAN_uc003uwk.2_Silent_p.Q322Q|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	322	MAM 2.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TCTCAGGACAACCTGGGCCCA	0.517												
SLC12A9	56996	broad.mit.edu	37	7	100459368	100459368	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:100459368T>C	uc003uwp.2	+	12	1688	c.1546T>C	c.(1546-1548)TAT>CAT	p.Y516H	SLC12A9_uc003uwq.2_Missense_Mutation_p.Y427H|SLC12A9_uc011kki.1_Missense_Mutation_p.Y47H|SLC12A9_uc003uwr.2_Missense_Mutation_p.Y252H|SLC12A9_uc003uws.2_Missense_Mutation_p.Y47H|SLC12A9_uc003uwt.2_Missense_Mutation_p.Y252H|SLC12A9_uc003uwv.2_Missense_Mutation_p.Y47H	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	516	Extracellular (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					GGTGCGTAAGTATCTGCTTCG	0.652												
SLC12A9	56996	broad.mit.edu	37	7	100463584	100463584	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:100463584G>T	uc003uwp.2	+	14	2244	c.2102G>T	c.(2101-2103)CGG>CTG	p.R701L	SLC12A9_uc011kki.1_Missense_Mutation_p.R232L|SLC12A9_uc003uwr.2_Missense_Mutation_p.R437L|SLC12A9_uc003uws.2_Missense_Mutation_p.R232L|SLC12A9_uc003uwt.2_Missense_Mutation_p.R437L|SLC12A9_uc003uwv.2_Missense_Mutation_p.R232L|TRIP6_uc010lhk.1_5'Flank|TRIP6_uc003uww.2_5'Flank	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	701	Extracellular (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					GTGCTGGCCCGGGCCAGCGGG	0.711												
TRIP6	7205	broad.mit.edu	37	7	100468291	100468291	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:100468291A>G	uc003uww.2	+	6	1095	c.925A>G	c.(925-927)ACA>GCA	p.T309A	TRIP6_uc010lhk.1_RNA	NM_003302	NP_003293	Q15654	TRIP6_HUMAN	thyroid receptor-interacting protein 6	309	LIM zinc-binding 1.				focal adhesion assembly|positive regulation of cell migration|regulation of transcription, DNA-dependent|release of cytoplasmic sequestered NF-kappaB|transcription, DNA-dependent	cytoplasm|cytoskeleton|focal adhesion|nucleus	identical protein binding|interleukin-1 receptor binding|kinase binding|thyroid hormone receptor binding|zinc ion binding			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)					TGTATGTTCTACATGCCGGGC	0.627												
SRRT	51593	broad.mit.edu	37	7	100482368	100482368	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:100482368A>G	uc003uwy.2	+	9	1218	c.950A>G	c.(949-951)AAT>AGT	p.N317S	SRRT_uc010lhl.1_Missense_Mutation_p.N317S|SRRT_uc003uxa.2_Missense_Mutation_p.N317S|SRRT_uc003uwz.2_Missense_Mutation_p.N317S	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	317	Glu-rich.				cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						TAGGCTGAGAATGACAGTTCT	0.507												
MUC17	140453	broad.mit.edu	37	7	100676723	100676723	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:100676723A>G	uc003uxp.1	+	3	2079	c.2026A>G	c.(2026-2028)ACC>GCC	p.T676A	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	676	Extracellular (Potential).|9.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TGCGGAAGGTACCAGCATGCC	0.493												
CUX1	1523	broad.mit.edu	37	7	101925200	101925200	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:101925200C>T	uc003uyt.2	+	21	1909	c.1890C>T	c.(1888-1890)TGC>TGT	p.C630C	CUX1_uc011kkn.1_Silent_p.C591C|CUX1_uc003uyw.2_Silent_p.C584C|CUX1_uc003uyv.2_Silent_p.C614C|CUX1_uc003uyu.2_Silent_p.C628C|CUX1_uc003uyz.2_RNA	NM_001913	NP_001904	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform b	Error:Variant_position_missing_in_P39880_after_alignment					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						TCCTGCACTGCCTGGTCTTCC	0.642												
LRWD1	222229	broad.mit.edu	37	7	102113440	102113440	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:102113440A>G	uc003uzn.2	+	15	2026	c.1888A>G	c.(1888-1890)ACC>GCC	p.T630A	LRWD1_uc003uzo.2_Missense_Mutation_p.T478A	NM_152892	NP_690852	Q9UFC0	LRWD1_HUMAN	leucine-rich repeats and WD repeat domain	630	WD 5.				chromatin modification|DNA-dependent DNA replication initiation|establishment of protein localization to chromatin|G1 phase of mitotic cell cycle	centromeric heterochromatin|nuclear origin of replication recognition complex|telomeric heterochromatin	chromatin binding|methyl-CpG binding|methylated histone residue binding			skin(1)	1						TGCCTCCTTCACCTACCTCAC	0.592												
LRRC17	10234	broad.mit.edu	37	7	102574928	102574928	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:102574928G>T	uc003vau.2	+	2	957	c.568G>T	c.(568-570)GCC>TCC	p.A190S	FBXL13_uc010liq.1_Intron|FBXL13_uc003vaq.2_Intron|FBXL13_uc010lir.1_Intron|FBXL13_uc003var.2_Intron|FBXL13_uc003vas.2_Intron|LRRC17_uc003vat.2_Missense_Mutation_p.A190S	NM_001031692	NP_001026862	Q8N6Y2	LRC17_HUMAN	leucine rich repeat containing 17 isoform 1	190	LRRCT 1.				bone marrow development|negative regulation of osteoclast differentiation|ossification	extracellular space				ovary(1)	1						GGGGAACTACGCCAAGTGTGA	0.413												
FBXL13	222235	broad.mit.edu	37	7	102669859	102669859	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:102669859G>A	uc003vaq.2	-	3	434	c.7C>T	c.(7-9)CCG>TCG	p.P3S	FBXL13_uc010lir.1_Missense_Mutation_p.P3S|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.P3S|FBXL13_uc003vav.2_RNA	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	3											0						ATCAATTCCGGAGTCATCTAA	0.303												
ARMC10	83787	broad.mit.edu	37	7	102738781	102738781	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:102738781C>T	uc003vaw.1	+	7	1205	c.813C>T	c.(811-813)CAC>CAT	p.H271H	ARMC10_uc003vay.1_Silent_p.H212H|ARMC10_uc003vax.1_Silent_p.H236H|ARMC10_uc003vbb.1_Silent_p.H177H|ARMC10_uc011kli.1_Silent_p.H212H|ARMC10_uc010lis.1_Silent_p.H153H|ARMC10_uc003vba.1_RNA|ARMC10_uc003vaz.1_Silent_p.H149H	NM_031905	NP_114111	Q8N2F6	ARM10_HUMAN	SVH protein isoform a	271					regulation of growth	endoplasmic reticulum membrane|integral to membrane	binding	p.H271Y(1)		ovary(1)	1						ATGACAGCCACGTAGCAAAGG	0.328												
DNAJC2	27000	broad.mit.edu	37	7	102963071	102963071	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:102963071A>G	uc003vbo.2	-	9	1071	c.820T>C	c.(820-822)TAC>CAC	p.Y274H	PMPCB_uc011kll.1_Intron|DNAJC2_uc003vbn.2_5'UTR|DNAJC2_uc010lix.2_Missense_Mutation_p.Y274H|DNAJC2_uc003vbp.2_5'UTR	NM_014377	NP_055192	Q99543	DNJC2_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 2	274					'de novo' cotranslational protein folding|chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane	chromatin binding|DNA binding|histone binding|Hsp70 protein binding|ubiquitin binding			kidney(1)	1						TCACAGCTGTATGCATTGTCT	0.194												
SLC26A5	375611	broad.mit.edu	37	7	103029793	103029793	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:103029793T>C	uc003vbz.2	-	13	1626	c.1390A>G	c.(1390-1392)ACC>GCC	p.T464A	SLC26A5_uc003vbt.1_Missense_Mutation_p.T464A|SLC26A5_uc003vbu.1_Missense_Mutation_p.T464A|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Intron|SLC26A5_uc003vby.2_Intron|SLC26A5_uc010liy.2_Intron	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	464	Extracellular (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						ATTTTGCTGGTTCTCCAGAAA	0.413												
SLC26A5	375611	broad.mit.edu	37	7	103033447	103033447	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:103033447T>C	uc003vbz.2	-	10	1274	c.1038A>G	c.(1036-1038)ATA>ATG	p.I346M	SLC26A5_uc003vbt.1_Missense_Mutation_p.I346M|SLC26A5_uc003vbu.1_Missense_Mutation_p.I346M|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_Intron|SLC26A5_uc003vbx.2_Missense_Mutation_p.I346M|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	346	Helical; Name=8; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						CAACGATGGCTATGGCAATGG	0.478												
RELN	5649	broad.mit.edu	37	7	103179593	103179593	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:103179593G>A	uc003vca.2	-	45	7272	c.7112C>T	c.(7111-7113)GCC>GTC	p.A2371V	RELN_uc010liz.2_Missense_Mutation_p.A2371V	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2371					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTCATTCACGGCAACGTCTGT	0.547												
MLL5	55904	broad.mit.edu	37	7	104707256	104707256	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:104707256T>C	uc003vcm.2	+	6	1031	c.497_splice	c.e6+2	p.R166_splice	MLL5_uc010lja.1_Splice_Site_p.R20_splice|MLL5_uc010ljb.1_Splice_Site_p.R166_splice|MLL5_uc003vcl.2_Splice_Site_p.R166_splice|MLL5_uc010ljc.2_Splice_Site_p.R166_splice	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5						cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						TCAGCCTAGGTAAGTTGCACA	0.333												
SRPK2	6733	broad.mit.edu	37	7	104773245	104773245	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:104773245G>A	uc003vct.2	-	12	1899	c.1712C>T	c.(1711-1713)GCG>GTG	p.A571V	SRPK2_uc003vcu.2_Missense_Mutation_p.A571V|SRPK2_uc003vcv.2_Missense_Mutation_p.A582V|SRPK2_uc003vcs.1_RNA	NM_182691	NP_872633	P78362	SRPK2_HUMAN	serine/arginine-rich protein-specific kinase 2	571	Protein kinase.				angiogenesis|cell differentiation|intracellular protein kinase cascade|negative regulation of viral genome replication|nuclear speck organization|positive regulation of cell cycle|positive regulation of cell proliferation|positive regulation of gene expression|positive regulation of neuron apoptosis|positive regulation of viral genome replication|spliceosome assembly	cytoplasm|nucleolus	14-3-3 protein binding|ATP binding|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TACCATACACGCCGTGCTCCA	0.557												
SRPK2	6733	broad.mit.edu	37	7	104782498	104782498	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:104782498T>C	uc003vct.2	-	10	1654	c.1467A>G	c.(1465-1467)AGA>AGG	p.R489R	SRPK2_uc003vcu.2_Silent_p.R489R|SRPK2_uc003vcv.2_Silent_p.R500R|SRPK2_uc003vcw.1_Silent_p.R489R	NM_182691	NP_872633	P78362	SRPK2_HUMAN	serine/arginine-rich protein-specific kinase 2	489	Protein kinase.				angiogenesis|cell differentiation|intracellular protein kinase cascade|negative regulation of viral genome replication|nuclear speck organization|positive regulation of cell cycle|positive regulation of cell proliferation|positive regulation of gene expression|positive regulation of neuron apoptosis|positive regulation of viral genome replication|spliceosome assembly	cytoplasm|nucleolus	14-3-3 protein binding|ATP binding|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CCGTTCTGCTTCTGTCATGGG	0.522												
PUS7	54517	broad.mit.edu	37	7	105111264	105111264	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:105111264T>G	uc003vcx.2	-	11	1488	c.1269A>C	c.(1267-1269)GAA>GAC	p.E423D	PUS7_uc010lji.2_Missense_Mutation_p.E429D|PUS7_uc003vcy.2_Missense_Mutation_p.E423D|PUS7_uc003vcz.1_Missense_Mutation_p.E423D	NM_019042	NP_061915	Q96PZ0	PUS7_HUMAN	pseudouridylate synthase 7 homolog	423	TRUD.				pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			breast(1)	1						TTGCCCATTCTTCTCTGCATT	0.448												
PIK3CG	5294	broad.mit.edu	37	7	106508581	106508581	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:106508581A>G	uc003vdv.3	+	2	660	c.575A>G	c.(574-576)GAC>GGC	p.D192G	PIK3CG_uc003vdu.2_Missense_Mutation_p.D192G|PIK3CG_uc003vdw.2_Missense_Mutation_p.D192G	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	192					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						GCCAGCCGCGACCCCAAGCTC	0.617												
GPR22	2845	broad.mit.edu	37	7	107114534	107114534	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:107114534A>C	uc003vef.2	+	3	1375	c.29A>C	c.(28-30)AAC>ACC	p.N10T	COG5_uc003vec.2_Intron|COG5_uc003ved.2_Intron|COG5_uc003vee.2_Intron	NM_005295	NP_005286	Q99680	GPR22_HUMAN	G protein-coupled receptor 22	10	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2						CTGGAAATCAACATGCAGTCT	0.343												
SLC26A4	5172	broad.mit.edu	37	7	107334918	107334918	+	Missense_Mutation	SNP	T	T	C	rs111033307		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:107334918T>C	uc003vep.2	+	11	1558	c.1334T>C	c.(1333-1335)TTG>TCG	p.L445S	SLC26A4_uc011kmb.1_Missense_Mutation_p.L32S|SLC26A4_uc011kmc.1_Intron|SLC26A4_uc011kmd.1_Missense_Mutation_p.L14S	NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	445	Cytoplasmic (Potential).		L -> W (in PDS and DFNB4).		regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						CTGGAACCCTTGCAGAAGGTA	0.458									Pendred_syndrome			
NRCAM	4897	broad.mit.edu	37	7	107808754	107808754	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:107808754A>G	uc003vfb.2	-	29	3752	c.3281T>C	c.(3280-3282)GTG>GCG	p.V1094A	NRCAM_uc003vfc.2_Intron|NRCAM_uc011kmk.1_Intron|NRCAM_uc003vfd.2_Intron|NRCAM_uc003vfe.2_Intron|NRCAM_uc011kmj.1_Intron	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	1094	Fibronectin type-III 5.|Extracellular (Potential).			HV -> YA (in Ref. 8; CAA04507).	angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						ATAAAAGTTCACATGCTCTGG	0.378												
TMEM168	64418	broad.mit.edu	37	7	112423920	112423920	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:112423920T>C	uc003vgn.2	-	2	1353	c.961A>G	c.(961-963)ACC>GCC	p.T321A	TMEM168_uc010lju.2_Missense_Mutation_p.T321A|TMEM168_uc011kmr.1_Intron	NM_022484	NP_071929	Q9H0V1	TM168_HUMAN	transmembrane protein 168	321						integral to membrane|transport vesicle				ovary(1)|central_nervous_system(1)	2						TTTAATTTGGTATGGAATCCC	0.348												
FOXP2	93986	broad.mit.edu	37	7	114270053	114270053	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:114270053C>T	uc003vhb.2	+	5	964	c.590C>T	c.(589-591)GCG>GTG	p.A197V	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Missense_Mutation_p.A222V|FOXP2_uc003vha.2_Missense_Mutation_p.A105V|FOXP2_uc011kmu.1_Missense_Mutation_p.A214V|FOXP2_uc011kmv.1_Missense_Mutation_p.A197V|FOXP2_uc010ljz.1_Missense_Mutation_p.A105V|FOXP2_uc003vgt.1_RNA|FOXP2_uc003vgv.1_Missense_Mutation_p.A197V|FOXP2_uc003vgx.2_Missense_Mutation_p.A197V|FOXP2_uc003vhd.2_Missense_Mutation_p.A197V|FOXP2_uc003vhc.2_Missense_Mutation_p.A222V	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	197	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						GGAAAGCAAGCGAAAGAGGTA	0.244												
ST7	7982	broad.mit.edu	37	7	116859169	116859169	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:116859169G>A	uc003vin.2	+	14	1651	c.1437G>A	c.(1435-1437)AAG>AAA	p.K479K	ST7_uc011knl.1_Silent_p.K456K|ST7_uc003vio.2_Silent_p.K456K|ST7_uc003viq.2_Silent_p.K433K|ST7_uc011knm.1_Silent_p.K436K|ST7_uc003vir.2_Silent_p.K399K|ST7_uc011knn.1_Silent_p.K427K	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	479						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CCTTGGAAAAGGGGCACCTAT	0.448												
KCND2	3751	broad.mit.edu	37	7	119915302	119915302	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:119915302A>G	uc003vjj.1	+	1	1581	c.616A>G	c.(616-618)ACA>GCA	p.T206A		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	206					regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TGTGGTGGAAACAGTGCCGTG	0.562												
ING3	54556	broad.mit.edu	37	7	120593419	120593419	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:120593419A>G	uc003vjn.2	+	3	296	c.162A>G	c.(160-162)AAA>AAG	p.K54K	ING3_uc011knr.1_Silent_p.K54K|ING3_uc003vjl.2_Silent_p.K54K|ING3_uc003vjm.1_Silent_p.K54K|ING3_uc003vjo.2_5'UTR|ING3_uc003vjp.2_Silent_p.K54K|ING3_uc011kns.1_Silent_p.K39K	NM_019071	NP_061944	Q9NXR8	ING3_HUMAN	inhibitor of growth family, member 3 isoform 1	54					histone H2A acetylation|histone H4 acetylation|positive regulation of apoptosis|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Piccolo NuA4 histone acetyltransferase complex	zinc ion binding			ovary(1)	1	all_neural(327;0.117)					AGAAAAATAAACCTGAGTGGA	0.308												
PTPRZ1	5803	broad.mit.edu	37	7	121650430	121650430	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:121650430A>G	uc003vjy.2	+	12	1725	c.1330A>G	c.(1330-1332)AAT>GAT	p.N444D	PTPRZ1_uc003vjz.2_Missense_Mutation_p.N444D|PTPRZ1_uc011knt.1_5'UTR	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	444	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						CGCTATTGTGAATCCTGGTAG	0.388												
AASS	10157	broad.mit.edu	37	7	121753238	121753238	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:121753238C>T	uc003vka.2	-	10	1308	c.1212G>A	c.(1210-1212)CCG>CCA	p.P404P	AASS_uc011knu.1_RNA|AASS_uc011knv.1_RNA|AASS_uc003vkb.2_Silent_p.P404P|AASS_uc011knw.1_Intron	NM_005763	NP_005754	Q9UDR5	AASS_HUMAN	aminoadipate-semialdehyde synthase precursor	404	Lysine-ketoglutarate reductase.				protein tetramerization	mitochondrial matrix	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity|saccharopine dehydrogenase (NADP+, L-lysine-forming) activity			upper_aerodigestive_tract(1)|ovary(1)	2					L-Glutamic Acid(DB00142)|NADH(DB00157)	GGAGCTGTGCCGGCAAATTGT	0.408												
FEZF1	389549	broad.mit.edu	37	7	121944256	121944256	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:121944256G>T	uc003vkd.2	-	1	310	c.236C>A	c.(235-237)CCT>CAT	p.P79H	FEZF1_uc003vkc.2_Missense_Mutation_p.P79H|uc010lko.1_RNA|uc003vkf.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	79					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						GTAGGCCACAGGCACGAAGGG	0.572												
RNF133	168433	broad.mit.edu	37	7	122338722	122338722	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:122338722T>C	uc003vkj.1	-	1	487	c.251A>G	c.(250-252)AAT>AGT	p.N84S	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron	NM_139175	NP_631914	Q8WVZ7	RN133_HUMAN	ring finger protein 133	84	PA.					endoplasmic reticulum membrane|integral to membrane	ligase activity|zinc ion binding			skin(1)	1						ATTACATGCATTTTGGATTTT	0.443												
IQUB	154865	broad.mit.edu	37	7	123109382	123109382	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:123109382C>T	uc003vkn.2	-	9	2044	c.1467G>A	c.(1465-1467)ACG>ACA	p.T489T	IQUB_uc003vko.2_Silent_p.T489T|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Silent_p.T489T	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	489										ovary(3)|large_intestine(1)	4						TGGTGAACTGCGTATCCATCT	0.343												
ASB15	142685	broad.mit.edu	37	7	123256454	123256454	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:123256454A>G	uc003vku.1	+	6	489	c.197A>G	c.(196-198)AAA>AGA	p.K66R	ASB15_uc003vkv.1_Missense_Mutation_p.K66R|ASB15_uc003vkw.1_Missense_Mutation_p.K66R	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	66					intracellular signal transduction					skin(2)|lung(1)	3						GTAAAATATAAATATGCAATG	0.383												
SPAM1	6677	broad.mit.edu	37	7	123594255	123594255	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:123594255C>T	uc003vld.2	+	4	1033	c.631C>T	c.(631-633)CGG>TGG	p.R211W	SPAM1_uc003vle.2_Missense_Mutation_p.R211W|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.R211W|SPAM1_uc010lku.2_Missense_Mutation_p.R211W	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	211				R->G: Reduces activity by over 90%.	binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	AAAATTACTTCGGCCAAATCA	0.378												
SPAM1	6677	broad.mit.edu	37	7	123594523	123594523	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:123594523T>C	uc003vld.2	+	4	1301	c.899T>C	c.(898-900)GTT>GCT	p.V300A	SPAM1_uc003vle.2_Missense_Mutation_p.V300A|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.V300A|SPAM1_uc010lku.2_Missense_Mutation_p.V300A	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	300					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	CCACTTCCGGTTTTTGCATAT	0.408												
POT1	25913	broad.mit.edu	37	7	124503490	124503490	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:124503490A>G	uc003vlm.2	-	8	1061	c.460T>C	c.(460-462)TGT>CGT	p.C154R	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Missense_Mutation_p.C23R|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	154					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						TGAACATCACACAATTTTAGT	0.398												
GRM8	2918	broad.mit.edu	37	7	126409971	126409971	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:126409971A>G	uc003vlr.2	-	6	1616	c.1305T>C	c.(1303-1305)AGT>AGC	p.S435S	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.S435S|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Silent_p.S156S	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	435	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CATCAATGGTACTCATTCGTG	0.408										HNSCC(24;0.065)		
ATP6V1F	9296	broad.mit.edu	37	7	128505435	128505435	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:128505435T>C	uc003voc.1	+	2	224	c.163T>C	c.(163-165)TTT>CTT	p.F55L	KCP_uc003vob.1_Intron	NM_004231	NP_004222	Q16864	VATF_HUMAN	ATPase, H+ transporting, lysosomal 14kD, V1	55					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|membrane fraction|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATPase activity, uncoupled|hydrogen ion transporting ATP synthase activity, rotational mechanism|protein binding|proton-transporting ATPase activity, rotational mechanism			ovary(1)	1						CCACAGGCAATTTCTAAACCG	0.602												
TNPO3	23534	broad.mit.edu	37	7	128655045	128655045	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:128655045T>C	uc003vol.1	-	4	914	c.540A>G	c.(538-540)GTA>GTG	p.V180V	TNPO3_uc003vom.1_Silent_p.V114V|TNPO3_uc010lly.1_Silent_p.V180V|TNPO3_uc010llz.1_Silent_p.V180V	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	180					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						ATAGAGATACTACTGTACTAG	0.373												
FAM40B	57464	broad.mit.edu	37	7	129098164	129098164	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:129098164C>T	uc011koy.1	+	10	1187	c.1147C>T	c.(1147-1149)CGA>TGA	p.R383*	FAM40B_uc003vow.2_Nonsense_Mutation_p.R383*|FAM40B_uc011koz.1_Translation_Start_Site	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a	383											0						TGATGGAGAACGAACCTTGGA	0.572												
FAM40B	57464	broad.mit.edu	37	7	129102882	129102882	+	Splice_Site	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:129102882G>T	uc011koy.1	+	14	1591	c.1551_splice	c.e14+1	p.M517_splice	FAM40B_uc003vow.2_Splice_Site_p.M517_splice|FAM40B_uc011koz.1_Splice_Site_p.M9_splice	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a												0						GCAGTATATGGTAAGGAGATG	0.498												
MEST	4232	broad.mit.edu	37	7	130138019	130138019	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:130138019G>A	uc003vqg.2	+	5	596	c.379G>A	c.(379-381)GTG>ATG	p.V127M	MEST_uc003vqc.2_Missense_Mutation_p.V118M|MEST_uc003vqd.2_Missense_Mutation_p.V118M|MEST_uc003vqf.2_Missense_Mutation_p.V118M|MEST_uc011kph.1_Missense_Mutation_p.V113M|MEST_uc010lmg.2_Missense_Mutation_p.V127M	NM_002402	NP_002393	Q5EB52	MEST_HUMAN	mesoderm specific transcript isoform a	127					mesoderm development	endoplasmic reticulum membrane|integral to membrane	hydrolase activity|protein binding			ovary(2)	2	Melanoma(18;0.0435)					GGCCAGCATCGTGGAAGCGCT	0.507												
PLXNA4	91584	broad.mit.edu	37	7	131982902	131982902	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:131982902T>C	uc003vra.3	-	4	1680	c.1451A>G	c.(1450-1452)GAT>GGT	p.D484G		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	484	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GAAGGCCATATCCCGGAGGAC	0.572												
LRGUK	136332	broad.mit.edu	37	7	133859333	133859333	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:133859333A>G	uc003vrm.1	+	8	981	c.965A>G	c.(964-966)TAC>TGC	p.Y322C		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	322	LRR 9.						ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						GAAATAGAATACATTAAAAAT	0.333												
CALD1	800	broad.mit.edu	37	7	134650055	134650055	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:134650055A>G	uc003vrz.2	+	14	2755	c.2296_splice	c.e14-2	p.D766_splice	CALD1_uc003vsa.2_Splice_Site_p.D537_splice|CALD1_uc003vsb.2_Splice_Site_p.D511_splice|CALD1_uc010lmm.2_Splice_Site_p.D536_splice|CALD1_uc011kpt.1_Splice_Site_p.D285_splice|CALD1_uc003vsc.2_Splice_Site_p.D531_splice|CALD1_uc003vsd.2_Splice_Site_p.D505_splice|CALD1_uc011kpu.1_Splice_Site_p.D516_splice|CALD1_uc011kpv.1_Splice_Site_p.D375_splice|CALD1_uc003vse.2_Splice_Site_p.D629_splice|CALD1_uc010lmn.2_Splice_Site	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1						cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						CCTTTTTATCAGGACTTGAGA	0.413												
PTN	5764	broad.mit.edu	37	7	136938333	136938333	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:136938333A>G	uc003vtq.2	-	3	530	c.167T>C	c.(166-168)GTG>GCG	p.V56A	PTN_uc010lmx.2_Missense_Mutation_p.V56A|PTN_uc003vtr.1_Missense_Mutation_p.V56A	NM_002825	NP_002816	P21246	PTN_HUMAN	pleiotrophin	56					nervous system development|positive regulation of cell division|positive regulation of cell proliferation|transmembrane receptor protein tyrosine phosphatase signaling pathway	endoplasmic reticulum|extracellular space	growth factor activity|heparin binding|protein phosphatase inhibitor activity			upper_aerodigestive_tract(1)|pancreas(1)	2						ACTGGTGGGCACACACACACT	0.498												
KIAA1549	57670	broad.mit.edu	37	7	138601633	138601633	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:138601633A>G	uc011kql.1	-	2	2788	c.2739T>C	c.(2737-2739)AGT>AGC	p.S913S	KIAA1549_uc003vuk.3_Silent_p.S863S|KIAA1549_uc011kqj.1_Silent_p.S913S	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	913						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GAGGAGCAGCACTACTCTCTG	0.617			O	BRAF	pilocytic astrocytoma							
HIPK2	28996	broad.mit.edu	37	7	139315945	139315945	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:139315945T>C	uc003vvf.3	-	4	1487	c.1313A>G	c.(1312-1314)GAC>GGC	p.D438G	HIPK2_uc003vvd.3_Missense_Mutation_p.D438G	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	438	Protein kinase.|Interaction with DAXX.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					TGAGTCCGTGTCACGGTTGAA	0.488												
BRAF	673	broad.mit.edu	37	7	140434564	140434564	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:140434564C>T	uc003vwc.3	-	18	2195	c.2134G>A	c.(2134-2136)GCC>ACC	p.A712T		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	712	Protein kinase.				activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding		KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCAATAGAGGCGAGAATCTAC	0.284		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome			
BRAF	673	broad.mit.edu	37	7	140534520	140534520	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:140534520T>C	uc003vwc.3	-	3	454	c.393A>G	c.(391-393)CTA>CTG	p.L131L		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	131					activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding		KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	GAGATGAAGGTAGCACTGAAA	0.438		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome			
SSBP1	6742	broad.mit.edu	37	7	141443490	141443490	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:141443490T>C	uc003vwo.1	+	4	293	c.215T>C	c.(214-216)GTT>GCT	p.V72A	SSBP1_uc011kri.1_Missense_Mutation_p.V72A|SSBP1_uc010lnp.1_Missense_Mutation_p.V72A	NM_003143	NP_003134	Q04837	SSBP_HUMAN	single-stranded DNA binding protein 1 precursor	72	SSB.				DNA replication|positive regulation of helicase activity	mitochondrial nucleoid	single-stranded DNA binding			ovary(1)	1	Melanoma(164;0.0171)					GATAGTGAAGTTTACCAACTG	0.373												
MGAM	8972	broad.mit.edu	37	7	141731569	141731569	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:141731569A>G	uc003vwy.2	+	13	1614	c.1560A>G	c.(1558-1560)CAA>CAG	p.Q520Q		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	520	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TTCACAATCAAGTAGAGTTTG	0.378												
PRSS1	5644	broad.mit.edu	37	7	142460323	142460323	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:142460323C>T	uc003wak.2	+	4	513	c.496C>T	c.(496-498)CTG>TTG	p.L166L	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc003wam.2_Silent_p.L106L	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	166	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			TGCTCCTGTGCTGAGCCAGGC	0.532									Hereditary_Pancreatitis			
CASP2	835	broad.mit.edu	37	7	142989724	142989724	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:142989724C>T	uc003wco.2	+	4	555	c.408C>T	c.(406-408)TAC>TAT	p.Y136Y	CASP2_uc003wcp.2_Intron|CASP2_uc011kta.1_Silent_p.Y20Y|CASP2_uc003wcq.2_RNA	NM_032982	NP_116764	P42575	CASP2_HUMAN	caspase 2 isoform 1 preproprotein	136					apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|protein maturation by peptide bond cleavage	cytosol	cysteine-type endopeptidase activity|enzyme binding|protein binding|protein domain specific binding			lung(2)|ovary(1)	3	Melanoma(164;0.059)					GCTGTGACTACGACTTGAGTC	0.473												
CASP2	835	broad.mit.edu	37	7	142991808	142991808	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:142991808T>C	uc003wco.2	+	6	836	c.689T>C	c.(688-690)GTC>GCC	p.V230A	CASP2_uc003wcp.2_3'UTR|CASP2_uc011kta.1_Missense_Mutation_p.V114A|CASP2_uc003wcq.2_RNA	NM_032982	NP_116764	P42575	CASP2_HUMAN	caspase 2 isoform 1 preproprotein	230					apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|protein maturation by peptide bond cleavage	cytosol	cysteine-type endopeptidase activity|enzyme binding|protein binding|protein domain specific binding			lung(2)|ovary(1)	3	Melanoma(164;0.059)					AGTACTCTAGTCACCCTCTTC	0.498												
EPHA1	2041	broad.mit.edu	37	7	143095474	143095474	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:143095474C>T	uc003wcz.2	-	7	1491	c.1404G>A	c.(1402-1404)GCG>GCA	p.A468A		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	468	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				GCCGGGACCCCGCCCAGGTCA	0.582												
C7orf33	202865	broad.mit.edu	37	7	148288118	148288118	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:148288118G>A	uc003wew.2	+	1	462	c.101G>A	c.(100-102)CGC>CAC	p.R34H		NM_145304	NP_660347	Q8WU49	CG033_HUMAN	hypothetical protein LOC202865	34										central_nervous_system(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			GGGGCAAGGCGCCGGATTGAC	0.567												
ZNF398	57541	broad.mit.edu	37	7	148875952	148875952	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:148875952G>A	uc003wfl.2	+	6	1263	c.988G>A	c.(988-990)GGT>AGT	p.G330S	ZNF398_uc011kul.1_Missense_Mutation_p.G159S|ZNF398_uc011kum.1_Missense_Mutation_p.G335S	NM_170686	NP_733787	Q8TD17	ZN398_HUMAN	zinc finger 398 isoform a	330					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00143)			TACTCAGTTGGGTAGCTATCC	0.532												
ZNF212	7988	broad.mit.edu	37	7	148949824	148949824	+	Missense_Mutation	SNP	C	C	T	rs150585649	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:148949824C>T	uc003wfp.2	+	4	665	c.569C>T	c.(568-570)GCG>GTG	p.A190V		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	190	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			GAGGGAGAAGCGGAGTTGGGT	0.567												
ZNF777	27153	broad.mit.edu	37	7	149148196	149148196	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:149148196T>C	uc003wfv.2	-	4	1144	c.981A>G	c.(979-981)GCA>GCG	p.A327A		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	327	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			GTTTGGAAATTGCATAGTCTA	0.527												
ZNF777	27153	broad.mit.edu	37	7	149152530	149152530	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:149152530A>G	uc003wfv.2	-	2	747	c.584T>C	c.(583-585)GTG>GCG	p.V195A		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			CTTCCTCTCCACTGCTTGGAC	0.597												
ZNF746	155061	broad.mit.edu	37	7	149189961	149189961	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:149189961T>C	uc003wfw.2	-	4	780	c.509A>G	c.(508-510)GAC>GGC	p.D170G	ZNF746_uc010lpi.2_Missense_Mutation_p.D170G	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	170					negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TGGACTGGGGTCCACAGGAAC	0.582												
ZNF746	155061	broad.mit.edu	37	7	149191542	149191542	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:149191542T>C	uc003wfw.2	-	2	348	c.77A>G	c.(76-78)GAA>GGA	p.E26G	ZNF746_uc010lpi.2_Missense_Mutation_p.E26G	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	26	Potential.				negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			AGCCTGCGATTCAATCTTCCT	0.537												
SSPO	23145	broad.mit.edu	37	7	149480000	149480000	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:149480000C>T	uc010lpk.2	+	15	1966	c.1966C>T	c.(1966-1968)CGC>TGC	p.R656C	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	656	VWFD 2.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCTCAGTGTGCGCCGAGCTTC	0.662												
SSPO	23145	broad.mit.edu	37	7	149522125	149522125	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:149522125C>T	uc010lpk.2	+	97	13912	c.13912C>T	c.(13912-13914)CGC>TGC	p.R4638C	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_Intron|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4638	TSP type-1 23.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GTTCAGGCTACGCTGGAGAGA	0.642												
REPIN1	29803	broad.mit.edu	37	7	150069806	150069806	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:150069806C>T	uc010lpq.1	+	4	1965	c.1476C>T	c.(1474-1476)TGC>TGT	p.C492C	REPIN1_uc003whd.2_Silent_p.C481C|REPIN1_uc010lpr.1_Silent_p.C549C|REPIN1_uc003whc.2_Silent_p.C492C|REPIN1_uc003whe.2_Silent_p.C492C	NM_013400	NP_037532	Q9BWE0	REPI1_HUMAN	replication initiator 1 isoform 1	492	C2H2-type 13.				DNA replication	nuclear origin of replication recognition complex	DNA binding|zinc ion binding			pancreas(1)	1	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.011)			GCCCCGACTGCGGCAAAGCCT	0.687												
ZNF775	285971	broad.mit.edu	37	7	150094516	150094516	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:150094516G>A	uc003whf.1	+	3	1072	c.947G>A	c.(946-948)CGC>CAC	p.R316H		NM_173680	NP_775951	Q96BV0	ZN775_HUMAN	zinc finger protein 775	316	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.0173)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGTGCGGCCGCCGCTTCAGC	0.682												
GIMAP8	155038	broad.mit.edu	37	7	150164279	150164279	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:150164279T>C	uc003whj.2	+	2	823	c.493T>C	c.(493-495)TAC>CAC	p.Y165H		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	165						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		TGAGGGCCGATACTGCATTTT	0.453												
ACCN3	9311	broad.mit.edu	37	7	150746479	150746479	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:150746479A>G	uc003win.2	+	1	875	c.507A>G	c.(505-507)CAA>CAG	p.Q169Q	ACCN3_uc003wio.2_Silent_p.Q169Q|ACCN3_uc003wip.2_Silent_p.Q169Q|ACCN3_uc003wiq.2_RNA	NM_004769	NP_004760	Q9UHC3	ACCN3_HUMAN	amiloride-sensitive cation channel 3 isoform a	169	Extracellular (Potential).				sensory perception|signal transduction	cytoplasm|integral to plasma membrane	ligand-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCGTGGCCAACCTTGTGGGC	0.617												
SMARCD3	6604	broad.mit.edu	37	7	150936814	150936814	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:150936814A>G	uc003wjs.2	-	11	1293	c.1192T>C	c.(1192-1194)TCC>CCC	p.S398P	SMARCD3_uc003wjt.2_Missense_Mutation_p.S385P|SMARCD3_uc003wju.2_Missense_Mutation_p.S385P	NM_001003801	NP_001003801	Q6STE5	SMRD3_HUMAN	SWI/SNF related, matrix associated, actin	398					cellular lipid metabolic process|chromatin modification|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	nuclear hormone receptor binding|protein binding|transcription coactivator activity|transcription factor binding			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGGTTTATGGACTCAATCGTC	0.547												
PRKAG2	51422	broad.mit.edu	37	7	151478262	151478262	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:151478262T>C	uc003wkk.2	-	3	1053	c.442A>G	c.(442-444)AGG>GGG	p.R148G	PRKAG2_uc003wkj.2_Missense_Mutation_p.R104G|PRKAG2_uc010lqe.1_RNA|PRKAG2_uc003wkm.1_Missense_Mutation_p.R148G	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	148					ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		GAGAAAAACCTGATGCCCCCG	0.587												
MLL3	58508	broad.mit.edu	37	7	151845715	151845715	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:151845715C>T	uc003wla.2	-	52	13516	c.13297G>A	c.(13297-13299)GCT>ACT	p.A4433T	MLL3_uc003wkz.2_Missense_Mutation_p.A3551T|MLL3_uc003wkx.2_Missense_Mutation_p.A591T|MLL3_uc003wky.2_Missense_Mutation_p.A1997T	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4433					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding	p.A4433T(1)		large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GACCACAGAGCGCAGTTCAAG	0.483			N		medulloblastoma							
MLL3	58508	broad.mit.edu	37	7	151853312	151853312	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:151853312G>A	uc003wla.2	-	45	12009	c.11790C>T	c.(11788-11790)GCC>GCT	p.A3930A	MLL3_uc003wkz.2_Silent_p.A3048A|MLL3_uc003wkx.2_Silent_p.A88A|MLL3_uc003wky.2_Silent_p.A1494A	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	3930					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CTAACACTCCGGCTTTTCCAG	0.473			N		medulloblastoma							
MLL3	58508	broad.mit.edu	37	7	151859654	151859654	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:151859654T>C	uc003wla.2	-	43	11227	c.11008A>G	c.(11008-11010)AAT>GAT	p.N3670D	MLL3_uc003wkz.2_Missense_Mutation_p.N2731D|MLL3_uc003wky.2_Missense_Mutation_p.N1179D	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	3670					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GCTGCCATATTGGGAGTGGAT	0.488			N		medulloblastoma							
MLL3	58508	broad.mit.edu	37	7	151866269	151866269	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:151866269A>G	uc003wla.2	-	41	9736	c.9517_splice	c.e41+1	p.N3173_splice	MLL3_uc003wkz.2_Splice_Site_p.N2234_splice|MLL3_uc003wky.2_Splice_Site_p.N682_splice	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3						intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ATTTATACTTACTGACAAAGC	0.358			N		medulloblastoma							
DPP6	1804	broad.mit.edu	37	7	154263973	154263973	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:154263973A>G	uc003wlk.2	+	5	728	c.599A>G	c.(598-600)TAT>TGT	p.Y200C	DPP6_uc003wli.2_Missense_Mutation_p.Y136C|DPP6_uc003wlj.2_Missense_Mutation_p.Y200C|DPP6_uc003wlm.2_Missense_Mutation_p.Y138C|DPP6_uc011kvq.1_Missense_Mutation_p.Y138C	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	200	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			GATAGAGAGTATGCACTTTTT	0.289												
DPP6	1804	broad.mit.edu	37	7	154679440	154679440	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:154679440A>G	uc003wlk.2	+	23	2429	c.2300A>G	c.(2299-2301)TAC>TGC	p.Y767C	DPP6_uc003wli.2_Missense_Mutation_p.Y703C|DPP6_uc003wlm.2_Missense_Mutation_p.Y705C|DPP6_uc011kvq.1_Missense_Mutation_p.Y660C	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	767	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			AACAGAGCATACGAGGTGTGT	0.582												
PAXIP1	22976	broad.mit.edu	37	7	154748932	154748932	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:154748932A>G	uc003wlp.2	-	14	2592	c.2549_splice	c.e14+1	p.R850_splice	PAXIP1_uc003wlq.1_Splice_Site_p.R816_splice|PAXIP1_uc011kvs.1_Splice_Site_p.R814_splice	NM_007349	NP_031375	Q6ZW49	PAXI1_HUMAN	PAX interacting protein 1						DNA damage response, signal transduction by p53 class mediator|DNA recombination|DNA repair|histone H3-K4 methylation|positive regulation of histone acetylation|positive regulation of histone H3-K36 methylation|positive regulation of histone H3-K4 methylation|positive regulation of isotype switching|positive regulation of protein ubiquitination|positive regulation of transcription initiation from RNA polymerase II promoter|response to ionizing radiation|transcription, DNA-dependent	histone methyltransferase complex|nuclear matrix				lung(2)|ovary(1)|breast(1)|pancreas(1)	5	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0296)	UCEC - Uterine corpus endometrioid carcinoma (81;0.178)		TATTACTCATACCTGGCTCTT	0.358												
RBM33	155435	broad.mit.edu	37	7	155531064	155531064	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:155531064G>A	uc010lqk.1	+	11	2072	c.1704G>A	c.(1702-1704)CCG>CCA	p.P568P	RBM33_uc011kvv.1_Silent_p.P377P	NM_053043	NP_444271	Q96EV2	RBM33_HUMAN	RNA binding motif protein 33	568	Pro-rich.						nucleotide binding|RNA binding			ovary(1)	1	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)		CAGGACAGCCGTTTCTGCCCA	0.557												
RNF32	140545	broad.mit.edu	37	7	156437357	156437357	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:156437357A>G	uc003wmo.2	+	3	362	c.180A>G	c.(178-180)ATA>ATG	p.I60M	RNF32_uc010lql.1_RNA|RNF32_uc010lqm.2_Missense_Mutation_p.I60M|RNF32_uc003wmp.2_Missense_Mutation_p.I60M|RNF32_uc003wmq.2_Missense_Mutation_p.I60M|RNF32_uc003wmr.2_Missense_Mutation_p.I60M|RNF32_uc003wms.2_Missense_Mutation_p.I60M|RNF32_uc003wmu.2_RNA|RNF32_uc003wmt.2_Missense_Mutation_p.I60M	NM_030936	NP_112198	Q9H0A6	RNF32_HUMAN	ring finger protein 32	60						aggresome|endosome	protein binding|zinc ion binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00291)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		AGGCAATAATAGATACTGGAC	0.368												
UBE3C	9690	broad.mit.edu	37	7	157000100	157000100	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:157000100T>C	uc010lqs.2	+	12	1739	c.1427T>C	c.(1426-1428)GTA>GCA	p.V476A	UBE3C_uc003wng.2_Missense_Mutation_p.V476A	NM_014671	NP_055486	Q15386	UBE3C_HUMAN	ubiquitin protein ligase E3C	476					protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(2)|large_intestine(1)	5		all_hematologic(28;0.0185)|all_epithelial(9;0.0664)	OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)		AGGTCTATGGTACCGTTGCTT	0.323												
PTPRN2	5799	broad.mit.edu	37	7	157414139	157414139	+	Silent	SNP	G	G	A	rs77143062	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:157414139G>A	uc003wno.2	-	15	2380	c.2259C>T	c.(2257-2259)TGC>TGT	p.C753C	PTPRN2_uc003wnp.2_Silent_p.C736C|PTPRN2_uc003wnq.2_Silent_p.C724C|PTPRN2_uc003wnr.2_Silent_p.C715C|PTPRN2_uc011kwa.1_Silent_p.C776C	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	753	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CCTGGTAGGCGCACAGCGCTT	0.622												
NCAPG2	54892	broad.mit.edu	37	7	158472666	158472666	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:158472666A>G	uc003wnv.1	-	11	1277	c.1132T>C	c.(1132-1134)TTT>CTT	p.F378L	NCAPG2_uc010lqu.1_Missense_Mutation_p.F170L|NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Missense_Mutation_p.F378L|NCAPG2_uc011kwe.1_Missense_Mutation_p.F378L	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	378					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		AGCTCTTCAAACTGTTTCTGG	0.428												
DLGAP2	9228	broad.mit.edu	37	8	1626408	1626408	+	Missense_Mutation	SNP	G	G	A	rs34274599		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:1626408G>A	uc003wpl.2	+	9	2174	c.2077G>A	c.(2077-2079)GTC>ATC	p.V693I	DLGAP2_uc003wpm.2_Missense_Mutation_p.V679I	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	772					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		TTCTAACAGCGTCACGGCCGC	0.557												
ARHGEF10	9639	broad.mit.edu	37	8	1893759	1893759	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:1893759C>T	uc003wpr.2	+	27	3513	c.3335C>T	c.(3334-3336)ACG>ATG	p.T1112M	ARHGEF10_uc003wps.2_Missense_Mutation_p.T1074M|ARHGEF10_uc010lre.2_Missense_Mutation_p.T763M	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	1137					centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		CTTTTTCACACGGAAACTCTC	0.612												
CSMD1	64478	broad.mit.edu	37	8	3263618	3263618	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:3263618A>G	uc011kwk.1	-	15	2590	c.2200T>C	c.(2200-2202)TCC>CCC	p.S734P	CSMD1_uc011kwj.1_Missense_Mutation_p.S126P	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	734	Sushi 4.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATGGACTCGGATCCCTGGGTC	0.567												
CSMD1	64478	broad.mit.edu	37	8	3265725	3265725	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:3265725C>T	uc011kwk.1	-	14	2160	c.1770G>A	c.(1768-1770)ACG>ACA	p.T590T	CSMD1_uc011kwj.1_5'UTR	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	590	Extracellular (Potential).|CUB 4.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CAGATGATGCCGTAAAGTTGA	0.383												
MCPH1	79648	broad.mit.edu	37	8	6302320	6302320	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:6302320A>G	uc003wqi.2	+	8	1145	c.1077A>G	c.(1075-1077)GTA>GTG	p.V359V	MCPH1_uc003wqh.2_Silent_p.V359V|MCPH1_uc011kwl.1_Silent_p.V311V	NM_024596	NP_078872	Q8NEM0	MCPH1_HUMAN	microcephalin	359						microtubule organizing center				central_nervous_system(1)|skin(1)	2		Hepatocellular(245;0.0663)		Colorectal(4;0.0505)		GAAAAAGAGTATCACATGGCT	0.458												
ANGPT2	285	broad.mit.edu	37	8	6360765	6360765	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:6360765A>G	uc003wqj.3	-	9	1677	c.1348T>C	c.(1348-1350)TGT>CGT	p.C450R	MCPH1_uc003wqi.2_Intron|ANGPT2_uc003wqk.3_Missense_Mutation_p.C449R|ANGPT2_uc010lri.2_Missense_Mutation_p.C398R	NM_001147	NP_001138	O15123	ANGP2_HUMAN	angiopoietin 2 isoform a precursor	450	Fibrinogen C-terminal.				angiogenesis|blood coagulation|leukocyte migration|negative regulation of blood vessel endothelial cell migration|negative regulation of positive chemotaxis|Tie receptor signaling pathway	extracellular space	metal ion binding|receptor tyrosine kinase binding			upper_aerodigestive_tract(1)	1		Hepatocellular(245;0.0663)		Colorectal(4;0.0142)|READ - Rectum adenocarcinoma(4;0.19)|COAD - Colon adenocarcinoma(4;0.226)		GAAGGACCACATGCATCAAAC	0.458												
SGK223	157285	broad.mit.edu	37	8	8235521	8235521	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:8235521A>G	uc003wsh.3	-	2	398	c.398T>C	c.(397-399)CTG>CCG	p.L133P		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	133							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GAAGCTGCCCAGGTAGACGAC	0.592												
CLDN23	137075	broad.mit.edu	37	8	8560303	8560303	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:8560303T>G	uc003wsi.2	+	1	638	c.395T>G	c.(394-396)GTG>GGG	p.V132G		NM_194284	NP_919260	Q96B33	CLD23_HUMAN	claudin 23	132	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0		Hepatocellular(245;0.217)		COAD - Colon adenocarcinoma(149;0.071)|READ - Rectum adenocarcinoma(644;0.238)		CTCATCCCGGTGTCCTGGTAC	0.697												
PPP1R3B	79660	broad.mit.edu	37	8	8998516	8998516	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:8998516A>G	uc003wsn.3	-	2	811	c.646T>C	c.(646-648)TGC>CGC	p.C216R	PPP1R3B_uc003wso.3_Missense_Mutation_p.C215R	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	216	CBM21.				glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		TGTCCATTGCACTCGTAGTAC	0.498												
TNKS	8658	broad.mit.edu	37	8	9609199	9609199	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:9609199A>G	uc003wss.2	+	19	2918	c.2913A>G	c.(2911-2913)GTA>GTG	p.V971V	TNKS_uc011kww.1_Silent_p.V734V|TNKS_uc010lrt.1_RNA	NM_003747	NP_003738	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related	971					mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			lung(4)|ovary(2)|kidney(1)	7				COAD - Colon adenocarcinoma(149;0.0467)		AGGCTACTGTAGTGAGTGCCT	0.512												
TNKS	8658	broad.mit.edu	37	8	9623891	9623891	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:9623891A>G	uc003wss.2	+	25	3701	c.3696A>G	c.(3694-3696)ACA>ACG	p.T1232T	TNKS_uc011kww.1_Silent_p.T995T	NM_003747	NP_003738	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related	1232	PARP catalytic.				mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			lung(4)|ovary(2)|kidney(1)	7				COAD - Colon adenocarcinoma(149;0.0467)		GAGGAGGAACAGGCTGCCCTA	0.448												
RP1L1	94137	broad.mit.edu	37	8	10469723	10469723	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:10469723A>G	uc003wtc.2	-	4	2114	c.1885T>C	c.(1885-1887)TCC>CCC	p.S629P		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	629					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GTGCAGGTGGAAGGGGTGGAA	0.662												
PINX1	54984	broad.mit.edu	37	8	10677706	10677706	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:10677706G>A	uc003wth.2	-	6	501	c.468C>T	c.(466-468)CCC>CCT	p.P156P	SOX7_uc011kwz.1_Intron|PINX1_uc003wti.2_Intron	NM_017884	NP_060354	Q96BK5	PINX1_HUMAN	PIN2-interacting protein 1	156					mitotic metaphase plate congression|negative regulation of cell proliferation	chromosome, telomeric region|condensed chromosome kinetochore|mitochondrion|nuclear chromosome|nucleolus|spindle	protein binding|telomerase inhibitor activity|telomeric RNA binding			lung(1)|kidney(1)|skin(1)	3				Kidney(29;0.0595)|COAD - Colon adenocarcinoma(149;0.105)|KIRC - Kidney renal clear cell carcinoma(542;0.201)		TTTATACCTCGGGAGTCTTCT	0.403												
BLK	640	broad.mit.edu	37	8	11405571	11405571	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:11405571A>G	uc003wty.2	+	4	787	c.206A>G	c.(205-207)TAC>TGC	p.Y69C	BLK_uc003wtz.2_5'UTR	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	69	SH3.				intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		CTGTATGACTACACCGCTATG	0.567												
BLK	640	broad.mit.edu	37	8	11420560	11420560	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:11420560T>C	uc003wty.2	+	12	1834	c.1253T>C	c.(1252-1254)GTG>GCG	p.V418A	BLK_uc003wtz.2_Missense_Mutation_p.V347A|BLK_uc003wua.2_Missense_Mutation_p.V254A	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	418	Protein kinase.				intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		AAAGCAGACGTGTGGTCGTTT	0.597												
USP17L2	377630	broad.mit.edu	37	8	11995092	11995092	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:11995092G>A	uc003wvc.1	-	1	1178	c.1178C>T	c.(1177-1179)GCC>GTC	p.A393V	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	393					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						AGCGCCGAGGGCTCTTGGTTC	0.557												
DLC1	10395	broad.mit.edu	37	8	12957275	12957275	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:12957275G>A	uc003wwm.2	-	9	3015	c.2571C>T	c.(2569-2571)AGC>AGT	p.S857S	DLC1_uc003wwk.1_Silent_p.S420S|DLC1_uc003wwl.1_Silent_p.S454S|DLC1_uc011kxx.1_Silent_p.S346S	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	857					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						TGGGGCTGTCGCTACTGTTTT	0.582												
SLC7A2	6542	broad.mit.edu	37	8	17407891	17407891	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:17407891T>C	uc011kyc.1	+	5	949	c.780T>C	c.(778-780)GGT>GGC	p.G260G	SLC7A2_uc011kyd.1_Silent_p.G300G|SLC7A2_uc011kye.1_Silent_p.G300G|SLC7A2_uc011kyf.1_Silent_p.G260G	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	260	Helical; (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	CGTTGGCTGGTGCTGCAACTT	0.463												
XPO7	23039	broad.mit.edu	37	8	21856749	21856749	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:21856749A>G	uc003xaa.3	+	23	2678	c.2576A>G	c.(2575-2577)GAT>GGT	p.D859G	XPO7_uc010lti.2_Missense_Mutation_p.D868G|XPO7_uc010ltk.2_Missense_Mutation_p.D860G	NM_015024	NP_055839	Q9UIA9	XPO7_HUMAN	exportin 7 isoform b	859					mRNA transport|protein export from nucleus|transmembrane transport	cytoplasm|nuclear pore	nuclear export signal receptor activity|protein transporter activity			ovary(1)|kidney(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5				Colorectal(74;0.0187)|COAD - Colon adenocarcinoma(73;0.0724)		TATGGAGACGATGCCCTGGAC	0.502												
XPO7	23039	broad.mit.edu	37	8	21857143	21857143	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:21857143A>G	uc003xaa.3	+	24	2842	c.2740A>G	c.(2740-2742)ATG>GTG	p.M914V	XPO7_uc010lti.2_Missense_Mutation_p.M923V|XPO7_uc010ltk.2_Missense_Mutation_p.M915V	NM_015024	NP_055839	Q9UIA9	XPO7_HUMAN	exportin 7 isoform b	914					mRNA transport|protein export from nucleus|transmembrane transport	cytoplasm|nuclear pore	nuclear export signal receptor activity|protein transporter activity			ovary(1)|kidney(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5				Colorectal(74;0.0187)|COAD - Colon adenocarcinoma(73;0.0724)		TCACGTCATCATGTATATTCT	0.443												
FAM160B2	64760	broad.mit.edu	37	8	21956814	21956814	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:21956814C>T	uc011kyx.1	+	9	1145	c.1094C>T	c.(1093-1095)GCG>GTG	p.A365V	FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	365											0						GACGCCTTGGCGAAGGCTGTG	0.562												
RHOBTB2	23221	broad.mit.edu	37	8	22864617	22864617	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:22864617A>G	uc003xcq.2	+	5	1396	c.859A>G	c.(859-861)ACC>GCC	p.T287A	RHOBTB2_uc003xcp.2_Missense_Mutation_p.T309A|RHOBTB2_uc011kzp.1_Missense_Mutation_p.T294A|uc003xcr.2_RNA	NM_015178	NP_055993	Q9BYZ6	RHBT2_HUMAN	Rho-related BTB domain containing 2 isoform 3	287	BTB 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			ovary(1)|lung(1)	2		Prostate(55;0.0513)|Breast(100;0.214)		Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		CTACCTCTCCACCTCTTCCTC	0.657												
TNFRSF10B	8795	broad.mit.edu	37	8	22900649	22900649	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:22900649A>G	uc003xcu.2	-	2	543	c.250_splice	c.e2+1	p.G84_splice	TNFRSF10B_uc003xct.2_Splice_Site_p.G84_splice|TNFRSF10B_uc011kzq.1_Intron|TNFRSF10B_uc003xcv.2_Splice_Site	NM_003842	NP_003833	O14763	TR10B_HUMAN	tumor necrosis factor receptor superfamily,						activation of NF-kappaB-inducing kinase activity|activation of pro-apoptotic gene products|cell surface receptor linked signaling pathway|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors|positive regulation of I-kappaB kinase/NF-kappaB cascade	plasma membrane	caspase activator activity|receptor activity|TRAIL binding				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0179)|COAD - Colon adenocarcinoma(73;0.0703)		TCTTGAACATACCAGGTGGAC	0.527												
CHMP7	91782	broad.mit.edu	37	8	23112844	23112844	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:23112844C>A	uc003xdc.2	+	4	1204	c.556C>A	c.(556-558)CTC>ATC	p.L186I	CHMP7_uc011kzs.1_RNA|CHMP7_uc003xdd.2_Missense_Mutation_p.L76I|CHMP7_uc003xde.2_Missense_Mutation_p.L44I	NM_152272	NP_689485	Q8WUX9	CHMP7_HUMAN	CHMP family, member 7	186					cellular membrane organization|late endosome to vacuole transport	cytosol|ESCRT III complex	protein transporter activity				0		Prostate(55;0.0513)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		GCTCAGCACCCTCTGTGCTAA	0.577												
LOXL2	4017	broad.mit.edu	37	8	23174508	23174508	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:23174508G>A	uc003xdh.1	-	9	1929	c.1590C>T	c.(1588-1590)TGC>TGT	p.C530C	LOXL2_uc010lty.1_Silent_p.C69C	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	530	SRCR 4.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		CGCCCTGGGGGCAGGCCACGT	0.657												
KCTD9	54793	broad.mit.edu	37	8	25287452	25287452	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:25287452T>C	uc003xeo.2	-	12	1249	c.1091A>G	c.(1090-1092)AAC>AGC	p.N364S	PPP2R2A_uc003xek.2_Intron|KCTD9_uc011lad.1_RNA	NM_017634	NP_060104	Q7L273	KCTD9_HUMAN	potassium channel tetramerisation domain	364	Pentapeptide repeat 3.					voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		all_cancers(63;0.0164)|Ovarian(32;0.000878)|all_epithelial(46;0.00542)|Breast(100;0.0164)|Hepatocellular(4;0.114)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Epithelial(17;2.39e-12)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0438)		CCCTCTCAGGTTGGCTTCTTG	0.418												
CDCA2	157313	broad.mit.edu	37	8	25364485	25364485	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:25364485A>G	uc003xep.1	+	15	2782	c.2303A>G	c.(2302-2304)GAC>GGC	p.D768G	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_3'UTR|CDCA2_uc003xeq.1_Missense_Mutation_p.D753G|CDCA2_uc003xer.1_Missense_Mutation_p.D431G	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	768					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		AGAAAGGATGACTTCTTAGGA	0.353												
PTK2B	2185	broad.mit.edu	37	8	27297910	27297910	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:27297910A>G	uc003xfn.1	+	26	2799	c.1991A>G	c.(1990-1992)TAC>TGC	p.Y664C	PTK2B_uc003xfo.1_Missense_Mutation_p.Y664C|PTK2B_uc003xfp.1_Missense_Mutation_p.Y664C|PTK2B_uc003xfq.1_Missense_Mutation_p.Y664C|PTK2B_uc003xfr.1_Missense_Mutation_p.Y410C	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	664	Protein kinase.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		TGCTGGGACTACGACCCCAGT	0.647												
KIF13B	23303	broad.mit.edu	37	8	28980934	28980934	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:28980934G>A	uc003xhh.3	-	28	3487	c.3428C>T	c.(3427-3429)GCG>GTG	p.A1143V	uc003xhi.1_Intron	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	1143	Potential.				microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		GACCATCACCGCGTTCCTCTC	0.542												
GSR	2936	broad.mit.edu	37	8	30560691	30560691	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:30560691T>C	uc003xih.1	-	5	650	c.559A>G	c.(559-561)AGT>GGT	p.S187G		NM_000637	NP_000628	P00390	GSHR_HUMAN	glutathione reductase precursor	187					cell redox homeostasis|nucleobase, nucleoside and nucleotide interconversion	cytosol|mitochondrion	electron carrier activity|glutathione-disulfide reductase activity			ovary(2)|pancreas(2)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(542;0.105)|Kidney(114;0.125)	Carmustine(DB00262)|Glutathione(DB00143)|NADH(DB00157)	TTTTTCCCACTGACCTCTATT	0.517												
TEX15	56154	broad.mit.edu	37	8	30705316	30705316	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:30705316T>C	uc003xil.2	-	1	1218	c.1218A>G	c.(1216-1218)GAA>GAG	p.E406E		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	406										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CATGAGCTGTTTCTATGTTAT	0.348												
PURG	29942	broad.mit.edu	37	8	30889698	30889698	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:30889698T>C	uc003xin.2	-	1	620	c.601A>G	c.(601-603)ACC>GCC	p.T201A	WRN_uc003xio.3_5'Flank|PURG_uc003xim.1_Missense_Mutation_p.T201A	NM_013357	NP_037489	Q9UJV8	PURG_HUMAN	purine-rich element binding protein G isoform A	201	By similarity.					nucleus	DNA binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.0895)|Kidney(114;0.108)		CGCATCATGGTTTGTCTAATC	0.458												
WRN	7486	broad.mit.edu	37	8	30977830	30977830	+	Silent	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:30977830T>G	uc003xio.3	+	21	3308	c.2520T>G	c.(2518-2520)GGT>GGG	p.G840G	WRN_uc010lvk.2_Silent_p.G307G	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	840	Helicase C-terminal.				base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		TTCATTACGGTGCTCCTAAGG	0.433			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome			
C8orf41	80185	broad.mit.edu	37	8	33369912	33369912	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:33369912G>A	uc003xjl.3	-	1	745	c.220C>T	c.(220-222)CGG>TGG	p.R74W	C8orf41_uc003xjk.3_Missense_Mutation_p.R74W|C8orf41_uc010lvv.2_Missense_Mutation_p.R74W|C8orf41_uc003xjm.3_Missense_Mutation_p.R74W|C8orf41_uc003xjn.1_Missense_Mutation_p.R74W	NM_025115	NP_079391	Q6NXR4	CH041_HUMAN	hypothetical protein LOC80185	74							binding				0				KIRC - Kidney renal clear cell carcinoma(67;0.0923)|Kidney(114;0.111)		CCGCGGAGCCGTGCACCAGTC	0.542												
KCNU1	157855	broad.mit.edu	37	8	36766982	36766982	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:36766982A>C	uc010lvw.2	+	21	2347	c.2260A>C	c.(2260-2262)ATT>CTT	p.I754L	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	754	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		CATAGTGTTCATTGGGTCTCT	0.443												
PROSC	11212	broad.mit.edu	37	8	37635559	37635559	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:37635559A>G	uc003xkh.2	+	8	842	c.765A>G	c.(763-765)AAA>AAG	p.K255K		NM_007198	NP_009129	O94903	PROSC_HUMAN	proline synthetase co-transcribed homolog	255							pyridoxal phosphate binding			central_nervous_system(1)	1		Lung NSC(58;0.174)	BRCA - Breast invasive adenocarcinoma(5;6.14e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)		L-Proline(DB00172)|Pyridoxal Phosphate(DB00114)	ACTCAAAGAAACCCACCCCGG	0.517												
GPR124	25960	broad.mit.edu	37	8	37698297	37698297	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:37698297G>T	uc003xkj.2	+	18	3040	c.2677G>T	c.(2677-2679)GGG>TGG	p.G893W	GPR124_uc010lvy.2_Missense_Mutation_p.G676W	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	893	Helical; Name=4; (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			GATCGCTGGAGGGATTCCACT	0.562												
GPR124	25960	broad.mit.edu	37	8	37699017	37699017	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:37699017A>G	uc003xkj.2	+	19	3524	c.3161A>G	c.(3160-3162)TAC>TGC	p.Y1054C	GPR124_uc010lvy.2_Missense_Mutation_p.Y837C	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	1054	Helical; Name=7; (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			AGCTGCTTGTACGGGGTGGCA	0.701												
DDHD2	23259	broad.mit.edu	37	8	38092104	38092104	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:38092104T>C	uc003xlb.2	+	3	788	c.411_splice	c.e3+2	p.E137_splice	DDHD2_uc003xla.2_Splice_Site_p.E137_splice|DDHD2_uc003xlc.2_Splice_Site_p.E137_splice|DDHD2_uc011lbl.1_Splice_Site	NM_015214	NP_056029	O94830	DDHD2_HUMAN	DDHD domain containing 2 isoform 1						lipid catabolic process	centrosome	hydrolase activity|metal ion binding			large_intestine(1)|ovary(1)	2	Colorectal(12;0.000442)	all_lung(54;0.0657)|Lung NSC(58;0.175)	BRCA - Breast invasive adenocarcinoma(5;3.76e-25)|COAD - Colon adenocarcinoma(9;0.0977)			GTTTTAGAGGTATTCTTTTGA	0.348												
LETM2	137994	broad.mit.edu	37	8	38250157	38250157	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:38250157A>G	uc003xlm.1	+	3	175	c.4A>G	c.(4-6)AAG>GAG	p.K2E	LETM2_uc003xlk.2_Missense_Mutation_p.K49E|LETM2_uc011lbn.1_5'UTR|LETM2_uc003xll.1_Missense_Mutation_p.K2E|LETM2_uc003xln.1_5'UTR|LETM2_uc003xlo.1_5'UTR	NM_144652	NP_653253	Q2VYF4	LETM2_HUMAN	leucine zipper-EF-hand containing transmembrane	49	Mitochondrial intermembrane (Potential).					integral to membrane|mitochondrial inner membrane					0	all_cancers(2;6.77e-47)|all_epithelial(2;1.01e-50)|all_lung(3;1.25e-23)|Lung NSC(2;2.76e-23)|Colorectal(12;0.000442)|Esophageal squamous(3;0.00202)	all_lung(54;0.0657)|Hepatocellular(245;0.152)|Lung NSC(58;0.175)	Epithelial(3;1.17e-42)|all cancers(3;5.44e-38)|BRCA - Breast invasive adenocarcinoma(5;5.44e-27)|LUSC - Lung squamous cell carcinoma(2;7.12e-25)|Lung(2;4.49e-22)|COAD - Colon adenocarcinoma(9;0.114)			GACATGTATGAAGAACTATGA	0.423												
FGFR1	2260	broad.mit.edu	37	8	38274851	38274851	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:38274851T>C	uc003xlp.2	-	13	2578	c.1636A>G	c.(1636-1638)AAC>GAC	p.N546D	FGFR1_uc010lwf.2_RNA|FGFR1_uc011lbo.1_Missense_Mutation_p.N544D|FGFR1_uc011lbp.1_Missense_Mutation_p.N457D|FGFR1_uc011lbq.1_Missense_Mutation_p.N455D|FGFR1_uc010lwk.2_Missense_Mutation_p.N536D	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	546	Cytoplasmic (Potential).|Protein kinase.				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity	p.N546K(1)		lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	CCCAGCAGGTTGATGATATTC	0.542		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome					
ADAM32	203102	broad.mit.edu	37	8	39044429	39044429	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:39044429A>G	uc003xmt.3	+	11	1162	c.917A>G	c.(916-918)TAC>TGC	p.Y306C	ADAM32_uc011lch.1_Intron|ADAM32_uc003xmu.3_Intron	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	306	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			TTATTATAGTACCCCAAGGAG	0.318												
ADAM18	8749	broad.mit.edu	37	8	39525631	39525631	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:39525631C>T	uc003xni.2	+	14	1441	c.1441C>T	c.(1441-1443)CGT>TGT	p.R481C	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.R457C	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	481	Cys-rich.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			ATTGAATGGCCGTTTGTGCAA	0.398												
AGPAT6	137964	broad.mit.edu	37	8	41467407	41467407	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:41467407A>G	uc003xnz.2	+	4	1408	c.469A>G	c.(469-471)AGC>GGC	p.S157G		NM_178819	NP_848934	Q86UL3	GPAT4_HUMAN	lysophosphatidic acid acyltransferase zeta	157	Helical; (Potential).				acyl-CoA metabolic process|lactation|phosphatidylcholine biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|membrane fraction	glycerol-3-phosphate O-acyltransferase activity				0	Ovarian(28;0.00769)|Colorectal(14;0.0202)|Lung SC(25;0.211)	all_lung(54;0.0131)|Lung NSC(58;0.0363)|Hepatocellular(245;0.0462)|Esophageal squamous(32;0.0844)	OV - Ovarian serous cystadenocarcinoma(14;0.00126)|Colorectal(10;0.0014)|Lung(22;0.00177)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0147)			CCAGTACATCAGCCTTCGGCT	0.552												
FNTA	2339	broad.mit.edu	37	8	42939922	42939922	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:42939922T>C	uc003xps.2	+	8	963	c.915T>C	c.(913-915)AGT>AGC	p.S305S	FNTA_uc003xpt.2_Silent_p.S214S|FNTA_uc003xpu.2_Silent_p.S238S|FNTA_uc003xpv.2_RNA	NM_002027	NP_002018	P49354	FNTA_HUMAN	farnesyltransferase, CAAX box, alpha isoform a	305					cellular component disassembly involved in apoptosis|positive regulation of deacetylase activity|positive regulation of tubulin deacetylation|protein farnesylation|protein geranylgeranylation|transforming growth factor beta receptor signaling pathway	cytosol|microtubule associated complex	alpha-tubulin binding|CAAX-protein geranylgeranyltransferase activity|microtubule binding|protein farnesyltransferase activity			ovary(1)	1	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			TACAACCAAGTCATAGTTCCC	0.338												
HGSNAT	138050	broad.mit.edu	37	8	43002198	43002198	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:43002198T>C	uc003xpx.3	+	2	274	c.226T>C	c.(226-228)TGT>CGT	p.C76R		NM_152419	NP_689632	Q68CP4	HGNAT_HUMAN	heparan-alpha-glucosaminide N-acetyltransferase	104	Lumenal, vesicle (Potential).		C -> F (in MPS3C; results in a negligible amount of protein synthesis and very low enzyme activity; retained in the endoplasmic reticulum and loss of intralysosomal proteolytic cleavage).		lysosomal transport|protein oligomerization	integral to membrane|lysosomal membrane	heparan-alpha-glucosaminide N-acetyltransferase activity				0	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			ATCTGAATGCTGTTATCACGT	0.408												
PRKDC	5591	broad.mit.edu	37	8	48701752	48701752	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:48701752T>C	uc003xqi.2	-	76	10775	c.10718A>G	c.(10717-10719)AAT>AGT	p.N3573S	PRKDC_uc003xqj.2_Missense_Mutation_p.N3573S|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	3573					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				ATCTAAGGCATTAATAAAATC	0.308								NHEJ				
PRKDC	5591	broad.mit.edu	37	8	48732055	48732055	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:48732055T>C	uc003xqi.2	-	68	9410	c.9353A>G	c.(9352-9354)GAT>GGT	p.D3118G	PRKDC_uc003xqj.2_Missense_Mutation_p.D3118G|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	3118	KIP-binding.|FAT.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TAAGAGGACATCAATACTAGA	0.299								NHEJ				
PRKDC	5591	broad.mit.edu	37	8	48774943	48774943	+	Silent	SNP	T	T	C	rs66507466		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:48774943T>C	uc003xqi.2	-	44	5967	c.5910A>G	c.(5908-5910)AAA>AAG	p.K1970K	PRKDC_uc003xqj.2_Silent_p.K1970K|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1970					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CCTTTTCTGGTTTTTCACTAA	0.363								NHEJ				
PRKDC	5591	broad.mit.edu	37	8	48817531	48817531	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:48817531T>C	uc003xqi.2	-	26	2997	c.2940A>G	c.(2938-2940)ACA>ACG	p.T980T	PRKDC_uc003xqj.2_Silent_p.T980T|PRKDC_uc011ldh.1_Silent_p.T980T	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	980					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				ACAGTTGCCTTGTCACCTGAA	0.353								NHEJ				
PXDNL	137902	broad.mit.edu	37	8	52322005	52322005	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:52322005A>G	uc003xqu.3	-	17	2280	c.2179T>C	c.(2179-2181)TAC>CAC	p.Y727H	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	727					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TGGGCGCGGTACTTCGCATGG	0.667												
PXDNL	137902	broad.mit.edu	37	8	52322094	52322094	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:52322094G>A	uc003xqu.3	-	17	2191	c.2090C>T	c.(2089-2091)CCG>CTG	p.P697L	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	697					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GAGGGAGCGCGGGGACACCAA	0.612												
NPBWR1	2831	broad.mit.edu	37	8	53853400	53853400	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:53853400C>T	uc011ldu.1	+	1	933	c.933C>T	c.(931-933)GAC>GAT	p.D311D		NM_005285	NP_005276	P48145	NPBW1_HUMAN	G protein-coupled receptor 7	311	Cytoplasmic (Potential).				synaptic transmission	plasma membrane	opioid receptor activity|protein binding			ovary(2)|breast(1)	3		Lung NSC(129;0.0222)|all_epithelial(80;0.0301)|all_lung(136;0.0431)				CCTTCCTGGACGCCAGCTTCC	0.657												
SOX17	64321	broad.mit.edu	37	8	55372532	55372532	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:55372532T>C	uc003xsb.3	+	2	1426	c.1222T>C	c.(1222-1224)TAC>CAC	p.Y408H		NM_022454	NP_071899	Q9H6I2	SOX17_HUMAN	SRY-box 17	408	Sox C-terminal.				angiogenesis|cardiac cell fate determination|endocardial cell differentiation|endocardium formation|endoderm formation|heart formation|heart looping|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|outflow tract morphogenesis|positive regulation of transcription, DNA-dependent|protein destabilization|protein stabilization|regulation of embryonic development|renal system development|vasculogenesis|Wnt receptor signaling pathway	transcription factor complex	beta-catenin binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			lung(1)	1		Lung NSC(129;0.109)|all_epithelial(80;0.176)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;1.9e-07)|Epithelial(17;1.7e-05)|all cancers(17;0.000159)			CGCGGTATATTACTGCAACTA	0.602												
RP1	6101	broad.mit.edu	37	8	55534685	55534685	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:55534685C>T	uc003xsd.1	+	3	772	c.624C>T	c.(622-624)AGC>AGT	p.S208S	RP1_uc011ldy.1_Silent_p.S208S	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	208	Doublecortin 2.				axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGGTTCCCAGCCTCCAGGCAG	0.433												
XKR4	114786	broad.mit.edu	37	8	56435964	56435964	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:56435964C>T	uc003xsf.2	+	3	1163	c.1131C>T	c.(1129-1131)TGC>TGT	p.C377C		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	377	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TCCAGTTCTGCTGGCACTTCT	0.572												
PENK	5179	broad.mit.edu	37	8	57353979	57353979	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:57353979C>T	uc003xsz.2	-	2	737	c.656G>A	c.(655-657)CGC>CAC	p.R219H	PENK_uc003xta.3_Missense_Mutation_p.R219H	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	219					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CCACTCTGGGCGACCTACTCT	0.532												
SDCBP	6386	broad.mit.edu	37	8	59490615	59490615	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:59490615G>A	uc003xtn.2	+	6	576	c.426G>A	c.(424-426)CAG>CAA	p.Q142Q	SDCBP_uc003xto.2_Silent_p.Q141Q|SDCBP_uc003xtr.2_Silent_p.Q141Q|SDCBP_uc003xtp.2_Silent_p.Q136Q|SDCBP_uc003xtq.2_Silent_p.Q142Q|SDCBP_uc003xts.2_Silent_p.Q148Q|SDCBP_uc011led.1_Silent_p.Q83Q	NM_005625	NP_005616	O00560	SDCB1_HUMAN	syntenin isoform 1	142	PDZ 1.				actin cytoskeleton organization|axon guidance|positive regulation of phosphorylation|protein targeting to membrane|substrate-dependent cell migration, cell extension|synaptic transmission	cytoskeleton|cytosol|endoplasmic reticulum membrane|focal adhesion|interleukin-5 receptor complex|melanosome|nucleus	cytoskeletal adaptor activity|frizzled binding|interleukin-5 receptor binding|protein heterodimerization activity|protein N-terminus binding|syndecan binding				0		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				AGCTAGTCCAGGCTAATTCTC	0.388												
NSMAF	8439	broad.mit.edu	37	8	59502099	59502099	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:59502099T>C	uc003xtt.2	-	26	2337	c.2123A>G	c.(2122-2124)GAC>GGC	p.D708G	NSMAF_uc011lee.1_Missense_Mutation_p.D739G	NM_003580	NP_003571	Q92636	FAN_HUMAN	neutral sphingomyelinase (N-SMase) activation	708					ceramide metabolic process	cytoplasm|soluble fraction	protein binding|receptor signaling protein activity			ovary(1)	1		all_lung(136;0.174)|Lung NSC(129;0.2)				CATTAACGTGTCCTGGCGTCT	0.368												
CHD7	55636	broad.mit.edu	37	8	61654075	61654075	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:61654075T>C	uc003xue.2	+	2	561	c.84T>C	c.(82-84)GGT>GGC	p.G28G		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	28					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GAGAATGTGGTTACCCGGAAA	0.453												
CHD7	55636	broad.mit.edu	37	8	61742985	61742985	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:61742985G>T	uc003xue.2	+	15	4104	c.3627G>T	c.(3625-3627)GAG>GAT	p.E1209D		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1209					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TTGAAGTTGAGCTAACAAACA	0.373												
CHD7	55636	broad.mit.edu	37	8	61743072	61743072	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:61743072A>G	uc003xue.2	+	15	4191	c.3714A>G	c.(3712-3714)GTA>GTG	p.V1238V		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1238					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AAGCTAACGTACCTAACCTAT	0.418												
CHD7	55636	broad.mit.edu	37	8	61765392	61765392	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:61765392G>A	uc003xue.2	+	31	6585	c.6108G>A	c.(6106-6108)CCG>CCA	p.P2036P		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2036					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TTACAGAACCGCCCGACCTCT	0.473												
ADHFE1	137872	broad.mit.edu	37	8	67357523	67357523	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:67357523A>G	uc003xwb.3	+	6	458	c.424A>G	c.(424-426)ACC>GCC	p.T142A	ADHFE1_uc003xwd.3_RNA|ADHFE1_uc003xwc.3_Missense_Mutation_p.T94A|ADHFE1_uc003xwe.3_RNA|ADHFE1_uc003xwf.3_Intron|ADHFE1_uc011les.1_Missense_Mutation_p.T72A|ADHFE1_uc011leq.1_Intron|ADHFE1_uc011ler.1_Intron	NM_144650	NP_653251	Q8IWW8	HOT_HUMAN	alcohol dehydrogenase, iron containing, 1	142					2-oxoglutarate metabolic process|molecular hydrogen transport	mitochondrial matrix	hydroxyacid-oxoacid transhydrogenase activity|metal ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4		Lung NSC(129;0.197)	Epithelial(68;0.0321)|all cancers(69;0.0751)|BRCA - Breast invasive adenocarcinoma(89;0.0855)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			TGGTGGCTCTACCATGGACAC	0.468												
VCPIP1	80124	broad.mit.edu	37	8	67578033	67578033	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:67578033C>T	uc003xwn.2	-	1	1420	c.1161G>A	c.(1159-1161)AAG>AAA	p.K387K	SGK3_uc003xwp.2_5'Flank|C8orf44_uc003xwo.1_5'Flank	NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	387					protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			GTTTTATGTACTTTTTAATAA	0.413												
COPS5	10987	broad.mit.edu	37	8	67970406	67970406	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:67970406T>C	uc003xxe.2	-	3	750	c.419A>G	c.(418-420)CAC>CGC	p.H140R	COPS5_uc003xxd.2_Missense_Mutation_p.H76R|COPS5_uc003xxf.2_Missense_Mutation_p.H185R|COPS5_uc010lyu.1_5'Flank|COPS5_uc010lyv.1_Missense_Mutation_p.H140R	NM_006837	NP_006828	Q92905	CSN5_HUMAN	COP9 signalosome subunit 5	140	JAMM motif.|MPN.	Zinc; catalytic (By similarity).			cullin deneddylation|transcription from RNA polymerase II promoter	eukaryotic translation initiation factor 3 complex|signalosome	metal ion binding|metallopeptidase activity|protein binding|transcription coactivator activity|translation initiation factor activity			ovary(1)|skin(1)	2	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00389)|OV - Ovarian serous cystadenocarcinoma(28;0.00691)|all cancers(69;0.0205)|BRCA - Breast invasive adenocarcinoma(89;0.153)			ATAGCCAGGGTGGCTATGATA	0.418												
CSPP1	79848	broad.mit.edu	37	8	68007638	68007638	+	Silent	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:68007638T>A	uc003xxi.2	+	8	757	c.726T>A	c.(724-726)ACT>ACA	p.T242T	CSPP1_uc003xxg.1_Silent_p.T234T|CSPP1_uc003xxh.1_RNA|CSPP1_uc003xxj.2_Silent_p.T207T|CSPP1_uc003xxk.2_5'UTR	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	242						centrosome|microtubule|spindle				ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			ATGTCTTAACTCCTTCAGAGG	0.363												
ARFGEF1	10565	broad.mit.edu	37	8	68213490	68213490	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:68213490C>T	uc003xxo.1	-	3	671	c.281G>A	c.(280-282)CGC>CAC	p.R94H		NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	94					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			ACTAACTATGCGAGGACATTT	0.378												
SULF1	23213	broad.mit.edu	37	8	70488282	70488282	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:70488282A>G	uc010lza.1	+	6	967	c.250A>G	c.(250-252)ACA>GCA	p.T84A	SULF1_uc003xyd.2_Missense_Mutation_p.T84A|SULF1_uc003xye.2_Missense_Mutation_p.T84A|SULF1_uc003xyf.2_Missense_Mutation_p.T84A|SULF1_uc003xyg.2_Missense_Mutation_p.T84A	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	84					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			CTTTGTGACTACACCCATGTG	0.522												
SLCO5A1	81796	broad.mit.edu	37	8	70744455	70744455	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:70744455C>T	uc003xyl.2	-	2	1161	c.454G>A	c.(454-456)GTA>ATA	p.V152I	SLCO5A1_uc010lzb.2_Missense_Mutation_p.V152I|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Missense_Mutation_p.V152I|SLCO5A1_uc010lzc.2_Missense_Mutation_p.V152I	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	152	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			GTGGTAATTACGCTGCTCAGG	0.552											OREG0018815	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
NCOA2	10499	broad.mit.edu	37	8	71071751	71071751	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:71071751A>G	uc003xyn.1	-	10	1275	c.1113T>C	c.(1111-1113)CAT>CAC	p.H371H		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	371					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			TGTGAAGCATATGTAAAGATA	0.363			T	RUNXBP2	AML							
MSC	9242	broad.mit.edu	37	8	72756075	72756075	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:72756075G>A	uc003xyx.1	-	1	657	c.339C>T	c.(337-339)AAC>AAT	p.N113N	uc011lff.1_Intron|uc003xyy.2_5'Flank	NM_005098	NP_005089	O60682	MUSC_HUMAN	musculin	113	Basic motif.				transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0	Breast(64;0.176)		Epithelial(68;0.137)|BRCA - Breast invasive adenocarcinoma(89;0.203)			GCTCACGGGCGTTGGCCGCGT	0.701											OREG0018826	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
C8orf84	157869	broad.mit.edu	37	8	73979655	73979655	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:73979655C>T	uc003xzf.2	-	5	921	c.716G>A	c.(715-717)CGG>CAG	p.R239Q		NM_153225	NP_694957	Q8IVN8	RPESP_HUMAN	RPE-spondin precursor	239					immune response	extracellular region	polysaccharide binding|scavenger receptor activity				0						TCCTTGACACCGAGGATTACC	0.363												
ZFHX4	79776	broad.mit.edu	37	8	77764330	77764330	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:77764330A>G	uc003yav.2	+	10	5425	c.5038A>G	c.(5038-5040)ACC>GCC	p.T1680A	ZFHX4_uc003yau.1_Missense_Mutation_p.T1725A|ZFHX4_uc003yaw.1_Missense_Mutation_p.T1680A	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1680	Gln-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TTTTCCTATGACCCCAGAAGC	0.478										HNSCC(33;0.089)		
ZFHX4	79776	broad.mit.edu	37	8	77767833	77767833	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:77767833G>A	uc003yav.2	+	10	8928	c.8541G>A	c.(8539-8541)CCG>CCA	p.P2847P	ZFHX4_uc003yau.1_Silent_p.P2892P|ZFHX4_uc003yaw.1_Silent_p.P2847P	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2847						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAGATGACCCGGATGACAACG	0.483										HNSCC(33;0.089)		
PEX2	5828	broad.mit.edu	37	8	77895910	77895910	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:77895910G>A	uc003yax.2	-	4	963	c.505C>T	c.(505-507)CGT>TGT	p.R169C	PEX2_uc003yay.2_Missense_Mutation_p.R169C|PEX2_uc003yaz.2_Missense_Mutation_p.R169C	NM_000318	NP_000309	P28328	PEX2_HUMAN	peroxin 2	169					peroxisome organization	integral to peroxisomal membrane	protein binding|zinc ion binding			ovary(1)	1						CCTAGGAGACGTTCTGTCAAA	0.378												
TPD52	7163	broad.mit.edu	37	8	80963804	80963804	+	Missense_Mutation	SNP	G	G	A	rs141089311		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:80963804G>A	uc003ybr.1	-	4	786	c.464C>T	c.(463-465)TCG>TTG	p.S155L	TPD52_uc010lzr.2_RNA|TPD52_uc010lzs.1_RNA|TPD52_uc003ybs.1_Missense_Mutation_p.S115L|TPD52_uc003ybt.1_Missense_Mutation_p.S115L|TPD52_uc003ybq.1_RNA|TPD52_uc003ybu.1_RNA	NM_001025252	NP_001020423	P55327	TPD52_HUMAN	tumor protein D52 isoform 1	155					anatomical structure morphogenesis|B cell differentiation|secretion	endoplasmic reticulum|perinuclear region of cytoplasm	calcium ion binding|protein heterodimerization activity|protein homodimerization activity			ovary(1)	1	all_epithelial(4;1.13e-09)|Lung NSC(7;9.71e-07)|all_lung(9;3.75e-06)	Lung NSC(129;3.55e-06)|all_lung(136;1.53e-05)|Acute lymphoblastic leukemia(644;0.158)	BRCA - Breast invasive adenocarcinoma(6;0.00181)|Epithelial(68;0.0149)|all cancers(69;0.0612)			GCCAACAGACGAAAAAGCAGC	0.388												
IMPA1	3612	broad.mit.edu	37	8	82586104	82586104	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:82586104A>G	uc003ych.2	-	6	556	c.429T>C	c.(427-429)GGT>GGC	p.G143G	IMPA1_uc011lfq.1_Silent_p.G202G|IMPA1_uc011lfr.1_Silent_p.G143G	NM_005536	NP_005527	P29218	IMPA1_HUMAN	inositol(myo)-1(or 4)-monophosphatase 1 isoform	143					inositol phosphate dephosphorylation|phosphatidylinositol biosynthetic process|signal transduction	cytoplasm	inositol-1(or 4)-monophosphatase activity|metal ion binding|protein homodimerization activity			skin(1)	1					Lithium(DB01356)	GTAGTTTTTGACCATTACAAA	0.338												
RALYL	138046	broad.mit.edu	37	8	85774581	85774581	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:85774581C>T	uc003ycq.3	+	7	880	c.464C>T	c.(463-465)CCG>CTG	p.P155L	RALYL_uc003ycr.3_Missense_Mutation_p.P155L|RALYL_uc003ycs.3_Missense_Mutation_p.P155L|RALYL_uc010lzy.2_Missense_Mutation_p.P144L|RALYL_uc003yct.3_Missense_Mutation_p.P168L|RALYL_uc003ycu.3_Missense_Mutation_p.P82L|RALYL_uc003ycv.3_Missense_Mutation_p.P67L	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	155							identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						GCAGTAATTCCGCTGAAGCGT	0.522												
LRRCC1	85444	broad.mit.edu	37	8	86035830	86035830	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:86035830C>T	uc003ycw.2	+	7	1267	c.1113C>T	c.(1111-1113)AAC>AAT	p.N371N	LRRCC1_uc010lzz.1_Intron|LRRCC1_uc010maa.1_Silent_p.N72N|LRRCC1_uc003ycx.2_Silent_p.N278N|LRRCC1_uc003ycy.2_Silent_p.N351N	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	371					cell division|mitosis	centriole|nucleus					0						AAAACTACAACTCTTTTGTAA	0.323												
LRRCC1	85444	broad.mit.edu	37	8	86050657	86050657	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:86050657A>G	uc003ycw.2	+	17	2941	c.2787A>G	c.(2785-2787)GAA>GAG	p.E929E	LRRCC1_uc003ycx.2_Silent_p.E836E|LRRCC1_uc003ycy.2_Silent_p.E909E	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	929					cell division|mitosis	centriole|nucleus					0						AAAAATTTGAAAACAAGGAAA	0.318												
NBN	4683	broad.mit.edu	37	8	90982768	90982768	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:90982768G>A	uc003yej.1	-	7	830	c.720C>T	c.(718-720)TCC>TCT	p.S240S	NBN_uc003yei.1_Silent_p.S158S|NBN_uc011lgb.1_Silent_p.S240S	NM_002485	NP_002476	O60934	NBN_HUMAN	nibrin	240					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator|DNA duplex unwinding|double-strand break repair via homologous recombination|meiosis|mitotic cell cycle G1/S transition checkpoint|mitotic cell cycle G2/M transition DNA damage checkpoint|positive regulation of kinase activity|positive regulation of protein autophosphorylation|regulation of DNA-dependent DNA replication initiation|telomere maintenance	Mre11 complex|nuclear chromosome, telomeric region|nuclear inclusion body|nucleolus|nucleoplasm	protein N-terminus binding|transcription factor binding			central_nervous_system(3)|kidney(3)|lung(1)	7			BRCA - Breast invasive adenocarcinoma(11;0.0344)			AGACAACTGCGGAACTCAATT	0.343								Direct_reversal_of_damage|Homologous_recombination	Nijmegen_Breakage_syndrome			
NBN	4683	broad.mit.edu	37	8	90990516	90990516	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:90990516T>C	uc003yej.1	-	5	626	c.516A>G	c.(514-516)GTA>GTG	p.V172V	NBN_uc003yei.1_Silent_p.V90V|NBN_uc011lgb.1_Silent_p.V172V	NM_002485	NP_002476	O60934	NBN_HUMAN	nibrin	172	BRCT.				cell cycle arrest|DNA damage response, signal transduction by p53 class mediator|DNA duplex unwinding|double-strand break repair via homologous recombination|meiosis|mitotic cell cycle G1/S transition checkpoint|mitotic cell cycle G2/M transition DNA damage checkpoint|positive regulation of kinase activity|positive regulation of protein autophosphorylation|regulation of DNA-dependent DNA replication initiation|telomere maintenance	Mre11 complex|nuclear chromosome, telomeric region|nuclear inclusion body|nucleolus|nucleoplasm	protein N-terminus binding|transcription factor binding			central_nervous_system(3)|kidney(3)|lung(1)	7			BRCA - Breast invasive adenocarcinoma(11;0.0344)			ATTCTGGCTTTACAATTGGAC	0.303								Direct_reversal_of_damage|Homologous_recombination	Nijmegen_Breakage_syndrome			
SLC26A7	115111	broad.mit.edu	37	8	92406197	92406197	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:92406197A>G	uc003yex.2	+	19	2143	c.1865A>G	c.(1864-1866)AAC>AGC	p.N622S	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.N622S|SLC26A7_uc003yfa.2_Missense_Mutation_p.N622S	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	622	STAS.|Cytoplasmic (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TATTATGGAAACCTAGACTCA	0.353												
RUNX1T1	862	broad.mit.edu	37	8	92972632	92972632	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:92972632A>G	uc003yfd.2	-	11	1737	c.1653T>C	c.(1651-1653)TGT>TGC	p.C551C	RUNX1T1_uc003yfc.1_Silent_p.C524C|RUNX1T1_uc003yfe.1_Silent_p.C514C|RUNX1T1_uc010mao.2_Silent_p.C524C|RUNX1T1_uc011lgi.1_Silent_p.C562C|uc010mam.2_5'Flank|RUNX1T1_uc010man.1_Silent_p.C176C|RUNX1T1_uc003yfb.1_Silent_p.C514C	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	551	MYND-type.				generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GGGTCTGTCCACAGATGTGAT	0.597												
FAM92A1	137392	broad.mit.edu	37	8	94713550	94713550	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:94713550C>T	uc010maq.2	+	2	228	c.125C>T	c.(124-126)GCC>GTC	p.A42V	FAM92A1_uc003yfu.1_RNA|FAM92A1_uc003yfv.3_RNA	NM_145269	NP_660312	A1XBS5	F92A1_HUMAN	hypothetical protein LOC137392	42											0	Breast(36;2.4e-06)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			CGGAAAACTGCCAGGCTGAGA	0.478												
TMEM67	91147	broad.mit.edu	37	8	94793924	94793924	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:94793924A>G	uc011lgk.1	+	10	1088	c.1017A>G	c.(1015-1017)ATA>ATG	p.I339M	TMEM67_uc010mat.1_Missense_Mutation_p.I254M|TMEM67_uc010maw.2_Intron|TMEM67_uc003yga.3_Missense_Mutation_p.I258M	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	339					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			CCTATGATATAAGAGGAAATT	0.313												
CDH17	1015	broad.mit.edu	37	8	95143161	95143161	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:95143161A>G	uc003ygh.2	-	16	2352	c.2227T>C	c.(2227-2229)TTG>CTG	p.L743L	CDH17_uc011lgo.1_Silent_p.L529L|CDH17_uc011lgp.1_Silent_p.L743L	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	743	Cadherin 7.|Extracellular (Potential).					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			ATGCGGATCAAGACGACATAC	0.478												
CDH17	1015	broad.mit.edu	37	8	95161011	95161011	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:95161011C>T	uc003ygh.2	-	14	2013	c.1888G>A	c.(1888-1890)GGA>AGA	p.G630R	CDH17_uc011lgo.1_Missense_Mutation_p.G416R|CDH17_uc011lgp.1_Missense_Mutation_p.G630R	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	630	Cadherin 6.|Extracellular (Potential).					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			TATGGACTTCCGGCTTCTCTG	0.413												
KIAA1429	25962	broad.mit.edu	37	8	95503952	95503952	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:95503952A>G	uc003ygo.1	-	22	5007	c.4994T>C	c.(4993-4995)GTG>GCG	p.V1665A	KIAA1429_uc010maz.1_Intron	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1665					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			TTGAGGAACCACTTCTTTACT	0.448												
KIAA1429	25962	broad.mit.edu	37	8	95504890	95504890	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:95504890T>C	uc003ygo.1	-	21	4811	c.4798A>G	c.(4798-4800)ATA>GTA	p.I1600V	KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1600					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			CTTGACGTTATAAAGGTCTCA	0.338												
KIAA1429	25962	broad.mit.edu	37	8	95523695	95523695	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:95523695C>T	uc003ygo.1	-	13	3121	c.3108G>A	c.(3106-3108)GCG>GCA	p.A1036A	KIAA1429_uc003ygp.2_Silent_p.A1036A|KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1036					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			AAGTAACAAGCGCTGAAGGAA	0.413												
ESRP1	54845	broad.mit.edu	37	8	95690551	95690551	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:95690551A>G	uc003ygq.3	+	13	1955	c.1772A>G	c.(1771-1773)TAC>TGC	p.Y591C	ESRP1_uc003ygr.3_Missense_Mutation_p.Y587C|ESRP1_uc003ygs.3_Missense_Mutation_p.Y587C|ESRP1_uc003ygt.3_Missense_Mutation_p.Y591C|ESRP1_uc003ygu.3_Missense_Mutation_p.Y587C|ESRP1_uc003ygv.2_Missense_Mutation_p.Y431C|ESRP1_uc003ygw.2_Missense_Mutation_p.Y431C	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	591					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						ACAGCGTACTACCCAGCAGGC	0.507												
DPY19L4	286148	broad.mit.edu	37	8	95746974	95746974	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:95746974A>G	uc003ygx.2	+	3	368	c.244A>G	c.(244-246)AAC>GAC	p.N82D	DPY19L4_uc003ygy.2_Missense_Mutation_p.N19D	NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	82						integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					CTGGTTTTCCAACAGGCAGGT	0.373												
TP53INP1	94241	broad.mit.edu	37	8	95942825	95942825	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:95942825T>C	uc003yhg.2	-	4	989	c.605A>G	c.(604-606)CAG>CGG	p.Q202R	C8orf38_uc003yhe.1_Intron|C8orf38_uc003yhf.2_Intron|TP53INP1_uc003yhh.2_3'UTR	NM_033285	NP_150601	Q96A56	T53I1_HUMAN	tumor protein p53 inducible nuclear protein 1	202					apoptosis	PML body					0	Breast(36;8.75e-07)					GTTAAGAGGCTGTCTTTCACT	0.483												
PTDSS1	9791	broad.mit.edu	37	8	97307438	97307438	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:97307438G>A	uc003yht.1	+	5	656	c.554G>A	c.(553-555)AGT>AAT	p.S185N	PTDSS1_uc003yhu.1_Missense_Mutation_p.S39N	NM_014754	NP_055569	P48651	PTSS1_HUMAN	phosphatidylserine synthase 1	185					phosphatidylserine biosynthetic process	integral to membrane	transferase activity			ovary(1)	1	Breast(36;6.18e-05)				Phosphatidylserine(DB00144)	CTGATCCGTAGTTACGGTCTC	0.493												
PGCP	10404	broad.mit.edu	37	8	98041636	98041636	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:98041636C>T	uc003yhw.2	+	6	1133	c.967C>T	c.(967-969)CGT>TGT	p.R323C		NM_016134	NP_057218	Q9Y646	PGCP_HUMAN	plasma glutamate carboxypeptidase precursor	323					peptide metabolic process|proteolysis	cytoplasm|extracellular space	metal ion binding|metallocarboxypeptidase activity			upper_aerodigestive_tract(1)	1	Breast(36;1.86e-05)					CCCAGGGCTGCGTCCAAAGAG	0.428												
TSPYL5	85453	broad.mit.edu	37	8	98289418	98289418	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:98289418C>T	uc003yhy.2	-	1	759	c.655G>A	c.(655-657)GCG>ACG	p.A219T		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	219					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					GCCCTGTCCGCCTGGGCGTTC	0.607												
TSPYL5	85453	broad.mit.edu	37	8	98289628	98289628	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:98289628C>G	uc003yhy.2	-	1	549	c.445G>C	c.(445-447)GCC>CCC	p.A149P		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	149					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					GTTTCTGGGGCCTTCTTCCCG	0.657												
VPS13B	157680	broad.mit.edu	37	8	100396469	100396469	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:100396469C>T	uc003yiv.2	+	20	2969	c.2858C>T	c.(2857-2859)GCA>GTA	p.A953V	VPS13B_uc003yiw.2_Missense_Mutation_p.A953V|VPS13B_uc003yiu.1_Missense_Mutation_p.A953V|VPS13B_uc003yix.1_Missense_Mutation_p.A424V	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	953					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CAAGGACTAGCAGTTAATATT	0.289												
VPS13B	157680	broad.mit.edu	37	8	100403908	100403908	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:100403908C>T	uc003yiv.2	+	21	3169	c.3058C>T	c.(3058-3060)CCT>TCT	p.P1020S	VPS13B_uc003yiw.2_Missense_Mutation_p.P1020S|VPS13B_uc003yiu.1_Missense_Mutation_p.P1020S|VPS13B_uc003yix.1_Missense_Mutation_p.P490S	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1020					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TGCCAGCAGCCCTGTAAAAAC	0.294												
VPS13B	157680	broad.mit.edu	37	8	100711773	100711773	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:100711773T>A	uc003yiv.2	+	36	6253	c.6142T>A	c.(6142-6144)TCA>ACA	p.S2048T	VPS13B_uc003yiw.2_Missense_Mutation_p.S2023T	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2048					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TTTGGATATATCAAAGCCTTT	0.338												
VPS13B	157680	broad.mit.edu	37	8	100833587	100833587	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:100833587A>G	uc003yiv.2	+	50	9246	c.9135A>G	c.(9133-9135)AAA>AAG	p.K3045K	VPS13B_uc003yiw.2_Silent_p.K3020K	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3045					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TAGCAATTAAACTGGTCCATA	0.363												
VPS13B	157680	broad.mit.edu	37	8	100871606	100871606	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:100871606G>A	uc003yiv.2	+	57	11128	c.11017G>A	c.(11017-11019)GAC>AAC	p.D3673N	VPS13B_uc003yiw.2_Missense_Mutation_p.D3648N	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3673					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CGGGGTCGCCGACTTCTTCAG	0.597												
VPS13B	157680	broad.mit.edu	37	8	100871692	100871692	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:100871692A>G	uc003yiv.2	+	57	11214	c.11103A>G	c.(11101-11103)GTA>GTG	p.V3701V	VPS13B_uc003yiw.2_Silent_p.V3676V	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3701					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CATCGTTTGTAAAGCACATCT	0.498												
RGS22	26166	broad.mit.edu	37	8	100974620	100974620	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:100974620A>G	uc003yjb.1	-	27	4035	c.3840_splice	c.e27+1		RGS22_uc003yja.1_Splice_Site|RGS22_uc003yjc.1_Splice_Site	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22						negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			ACTATGACGTACCTTGAACCT	0.403												
UBR5	51366	broad.mit.edu	37	8	103297965	103297965	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:103297965G>A	uc003ykr.1	-	39	5293	c.5260C>T	c.(5260-5262)CGG>TGG	p.R1754W	UBR5_uc003yks.1_Missense_Mutation_p.R1754W	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	1754					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			GTACCACTCCGGCGTAAGTTT	0.458												
UBR5	51366	broad.mit.edu	37	8	103312362	103312362	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:103312362A>G	uc003ykr.1	-	23	3005	c.2972T>C	c.(2971-2973)ATG>ACG	p.M991T	UBR5_uc003yks.1_Missense_Mutation_p.M991T	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	991					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			ACGTCTCATCATTTCCCGTAA	0.453												
UBR5	51366	broad.mit.edu	37	8	103338886	103338886	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:103338886A>G	uc003ykr.1	-	13	1520	c.1487T>C	c.(1486-1488)GTA>GCA	p.V496A	UBR5_uc003yks.1_Missense_Mutation_p.V496A	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	496					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			AAAAGGAACTACACCCCTGAA	0.333												
FZD6	8323	broad.mit.edu	37	8	104330885	104330885	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:104330885T>C	uc003ylh.2	+	3	529	c.245T>C	c.(244-246)GTA>GCA	p.V82A	FZD6_uc003yli.2_Missense_Mutation_p.V82A|FZD6_uc003ylj.2_Missense_Mutation_p.V82A|FZD6_uc011lhn.1_Missense_Mutation_p.V48A|FZD6_uc011lho.1_Intron|FZD6_uc011lhp.1_Missense_Mutation_p.V27A	NM_003506	NP_003497	O60353	FZD6_HUMAN	frizzled 6 isoform a precursor	82	FZ.|Extracellular (Potential).				angiogenesis|axonogenesis|cell proliferation in midbrain|establishment of planar polarity|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|inner ear morphogenesis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|neural tube closure|non-canonical Wnt receptor signaling pathway	apical part of cell|apicolateral plasma membrane|cytoplasm|integral to plasma membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.86e-05)|STAD - Stomach adenocarcinoma(118;0.197)			AAAGCATTTGTACCAACCTGC	0.348												
RIMS2	9699	broad.mit.edu	37	8	105263882	105263882	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:105263882T>C	uc003yls.2	+	28	4179	c.3938T>C	c.(3937-3939)GTG>GCG	p.V1313A	RIMS2_uc003ylp.2_Missense_Mutation_p.V1295A|RIMS2_uc003ylq.2_Missense_Mutation_p.V1109A|RIMS2_uc003ylr.2_Missense_Mutation_p.V1134A	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1357	C2 2.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TTTATGGGAGTGGCCCAGATA	0.438										HNSCC(12;0.0054)		
LRP12	29967	broad.mit.edu	37	8	105510164	105510164	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:105510164G>A	uc003yma.2	-	5	711	c.616C>T	c.(616-618)CCT>TCT	p.P206S	LRP12_uc003ymb.2_Missense_Mutation_p.P187S|LRP12_uc003ylz.2_5'Flank	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	206	Extracellular (Potential).				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GCAGTTGGAGGATTTGCTTCT	0.418												
OXR1	55074	broad.mit.edu	37	8	107758085	107758085	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:107758085T>C	uc011lht.1	+	15	2583	c.2484T>C	c.(2482-2484)GGT>GGC	p.G828G	OXR1_uc003ymf.2_Silent_p.G800G|OXR1_uc011lhu.1_Silent_p.G793G|OXR1_uc010mcg.2_RNA|OXR1_uc010mch.2_Silent_p.G456G|OXR1_uc003ymk.2_Silent_p.G197G|OXR1_uc003yml.2_Silent_p.G170G	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	828	TLD.				cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			CTTTCGGTGGTGGAGGGTAAG	0.289												
EIF3E	3646	broad.mit.edu	37	8	109260960	109260960	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:109260960A>G	uc003ymu.2	-	1	1	c.-27_splice	c.e1-1		EIF3E_uc003ymv.2_Splice_Site|EIF3E_uc010mci.1_Splice_Site|EIF3E_uc010mcj.1_Splice_Site	NM_001568	NP_001559	P60228	EIF3E_HUMAN	eukaryotic translation initiation factor 3,						negative regulation of translational initiation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|eukaryotic translation initiation factor 3 complex|PML body	protein N-terminus binding			ovary(2)|kidney(1)	3			OV - Ovarian serous cystadenocarcinoma(57;6.84e-10)			GTCTGTGCTCACTAAAACTTT	0.493												
NUDCD1	84955	broad.mit.edu	37	8	110257628	110257628	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:110257628A>G	uc003ynb.3	-	9	1493	c.1382T>C	c.(1381-1383)GTT>GCT	p.V461A	NUDCD1_uc003yna.2_Missense_Mutation_p.V432A|NUDCD1_uc010mcl.2_Missense_Mutation_p.V374A	NM_032869	NP_116258	Q96RS6	NUDC1_HUMAN	NudC domain containing 1 isoform 1	461										ovary(1)|breast(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;1.56e-12)			TAGGGCATCAACATCATGGCG	0.413												
PKHD1L1	93035	broad.mit.edu	37	8	110425663	110425663	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:110425663A>G	uc003yne.2	+	21	2353	c.2249A>G	c.(2248-2250)TAC>TGC	p.Y750C		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	750	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGTTTAGCATACAAAGGATTC	0.274										HNSCC(38;0.096)		
PKHD1L1	93035	broad.mit.edu	37	8	110453524	110453524	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:110453524A>G	uc003yne.2	+	34	4224	c.4120A>G	c.(4120-4122)ACA>GCA	p.T1374A		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1374	Extracellular (Potential).|IPT/TIG 7.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTGCAATGTTACATCATCATC	0.299										HNSCC(38;0.096)		
PKHD1L1	93035	broad.mit.edu	37	8	110474095	110474095	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:110474095A>G	uc003yne.2	+	48	7445	c.7341A>G	c.(7339-7341)GTA>GTG	p.V2447V		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2447	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATGCTCCTGTACCTGGTGCTA	0.408										HNSCC(38;0.096)		
KCNV1	27012	broad.mit.edu	37	8	110980664	110980664	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:110980664C>T	uc003ynr.3	-	3	1498	c.1156G>A	c.(1156-1158)GCC>ACC	p.A386T	KCNV1_uc010mcw.2_Missense_Mutation_p.A386T	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	386						voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			GAGGTGGTGGCCCACCACCAT	0.458												
CSMD3	114788	broad.mit.edu	37	8	113256718	113256718	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:113256718T>C	uc003ynu.2	-	65	10466	c.10307A>G	c.(10306-10308)TAT>TGT	p.Y3436C	CSMD3_uc003yns.2_Missense_Mutation_p.Y2638C|CSMD3_uc003ynt.2_Missense_Mutation_p.Y3396C|CSMD3_uc011lhx.1_Missense_Mutation_p.Y3267C	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3436	Extracellular (Potential).|Sushi 28.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CTGACAGGTATAAATCAGTGT	0.443										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)		
CSMD3	114788	broad.mit.edu	37	8	113702138	113702138	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:113702138T>C	uc003ynu.2	-	14	2273	c.2114A>G	c.(2113-2115)CAA>CGA	p.Q705R	CSMD3_uc003yns.2_5'UTR|CSMD3_uc003ynt.2_Missense_Mutation_p.Q665R|CSMD3_uc011lhx.1_Missense_Mutation_p.Q601R	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	705	Extracellular (Potential).|Sushi 3.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTTATTCTCTTGACAAACAAT	0.368										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)		
TRPS1	7227	broad.mit.edu	37	8	116599390	116599390	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:116599390C>T	uc003ynz.2	-	4	2958	c.2499G>A	c.(2497-2499)GTG>GTA	p.V833V	TRPS1_uc011lhy.1_Silent_p.V837V|TRPS1_uc003yny.2_Silent_p.V846V|TRPS1_uc010mcy.2_Silent_p.V833V	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	833					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			GGGCGGCCTCCACATTGGGAC	0.617									Langer-Giedion_syndrome			
TRPS1	7227	broad.mit.edu	37	8	116616290	116616290	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:116616290T>C	uc003ynz.2	-	3	2326	c.1867A>G	c.(1867-1869)ACC>GCC	p.T623A	TRPS1_uc011lhy.1_Missense_Mutation_p.T627A|TRPS1_uc003yny.2_Missense_Mutation_p.T636A|TRPS1_uc010mcy.2_Missense_Mutation_p.T623A	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	623	C2H2-type 3; atypical.				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			ACGTCAGGGGTGGTGAATGAA	0.498									Langer-Giedion_syndrome			
TRPS1	7227	broad.mit.edu	37	8	116617019	116617019	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:116617019T>C	uc003ynz.2	-	3	1597	c.1138A>G	c.(1138-1140)AAC>GAC	p.N380D	TRPS1_uc011lhy.1_Missense_Mutation_p.N384D|TRPS1_uc003yny.2_Missense_Mutation_p.N393D|TRPS1_uc010mcy.2_Missense_Mutation_p.N380D	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	380					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			ATGGACTTGTTAGAGTTTTTC	0.433									Langer-Giedion_syndrome			
EXT1	2131	broad.mit.edu	37	8	118825188	118825188	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:118825188G>A	uc003yok.1	-	8	2418	c.1645C>T	c.(1645-1647)CGT>TGT	p.R549C		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	549	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			GGCAGAAAACGGCTGCTCATA	0.517			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome			
EXT1	2131	broad.mit.edu	37	8	118831934	118831934	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:118831934T>A	uc003yok.1	-	6	2290	c.1517A>T	c.(1516-1518)AAG>ATG	p.K506M		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	506	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			GTACTGGGACTTGGCTGCAGC	0.597			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome			
TAF2	6873	broad.mit.edu	37	8	120809270	120809270	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:120809270C>T	uc003you.2	-	8	1321	c.1051G>A	c.(1051-1053)GCC>ACC	p.A351T		NM_003184	NP_003175	Q6P1X5	TAF2_HUMAN	TBP-associated factor 2	351					G2/M transition of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor TFIID complex|transcription factor TFTC complex	metallopeptidase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(2)|ovary(2)|kidney(1)|skin(1)	6	Lung NSC(37;9.35e-07)|Ovarian(258;0.011)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			AACTGCTGGGCCAAGGATTGG	0.363												
DEPDC6	64798	broad.mit.edu	37	8	120977536	120977536	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:120977536A>G	uc003yow.3	+	4	677	c.490A>G	c.(490-492)ACC>GCC	p.T164A	DEPDC6_uc011lid.1_Missense_Mutation_p.T63A	NM_022783	NP_073620	Q8TB45	DPTOR_HUMAN	DEP domain containing 6	164	DEP 2.				intracellular signal transduction|negative regulation of cell size|negative regulation of protein kinase activity|negative regulation of TOR signaling cascade|regulation of apoptosis	intracellular	protein binding				0	Lung NSC(37;9.35e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			GTATGAGCGCACCTTCATGGC	0.532												
DEPDC6	64798	broad.mit.edu	37	8	121061867	121061867	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:121061867A>G	uc003yow.3	+	9	1341	c.1154A>G	c.(1153-1155)TAC>TGC	p.Y385C	DEPDC6_uc011lid.1_Missense_Mutation_p.Y284C	NM_022783	NP_073620	Q8TB45	DPTOR_HUMAN	DEP domain containing 6	385	PDZ.				intracellular signal transduction|negative regulation of cell size|negative regulation of protein kinase activity|negative regulation of TOR signaling cascade|regulation of apoptosis	intracellular	protein binding				0	Lung NSC(37;9.35e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			CATGTAGACTACCGGACCGTG	0.517												
COL14A1	7373	broad.mit.edu	37	8	121327827	121327827	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:121327827T>C	uc003yox.2	+	39	4870	c.4605_splice	c.e39+2	p.Q1535_splice	COL14A1_uc003yoz.2_Splice_Site_p.Q500_splice	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor						cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GGTCCACAGGTATTATTTTTG	0.388												
HAS2	3037	broad.mit.edu	37	8	122641473	122641473	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:122641473A>G	uc003yph.2	-	2	646	c.108T>C	c.(106-108)TTT>TTC	p.F36F		NM_005328	NP_005319	Q92819	HAS2_HUMAN	hyaluronan synthase 2	36	Extracellular (Potential).					integral to plasma membrane	hyaluronan synthase activity		HAS2/PLAG1(10)	soft_tissue(10)|ovary(5)	15	Lung NSC(37;3.12e-08)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)|all_neural(195;0.142)		STAD - Stomach adenocarcinoma(47;0.00503)			CCGTTTGGATAAACTGGTAGC	0.423												
ZHX2	22882	broad.mit.edu	37	8	123964290	123964290	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:123964290G>T	uc003ypk.1	+	3	1107	c.540G>T	c.(538-540)TCG>TCT	p.S180S		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	180						cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			CTGGGATCTCGGTGAGTAAAA	0.527												
WDR67	93594	broad.mit.edu	37	8	124140543	124140543	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:124140543A>G	uc003ypp.1	+	14	1997	c.1907A>G	c.(1906-1908)AAC>AGC	p.N636S	WDR67_uc011lig.1_Missense_Mutation_p.N636S|WDR67_uc011lih.1_Missense_Mutation_p.N526S|WDR67_uc003ypq.1_RNA|WDR67_uc003yps.1_Intron|WDR67_uc003ypt.1_Missense_Mutation_p.N93S|WDR67_uc003ypu.1_Missense_Mutation_p.N93S	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	636						centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			CATCGGAATAACCTGGATATA	0.338												
WDR67	93594	broad.mit.edu	37	8	124164129	124164129	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:124164129A>G	uc003ypp.1	+	22	3241	c.3151A>G	c.(3151-3153)ACT>GCT	p.T1051A	WDR67_uc011lig.1_Missense_Mutation_p.T955A|WDR67_uc011lih.1_Missense_Mutation_p.T941A|WDR67_uc003ypq.1_RNA|WDR67_uc003yps.1_Missense_Mutation_p.T685A|WDR67_uc003ypt.1_Missense_Mutation_p.T443A|WDR67_uc003ypu.1_Missense_Mutation_p.T443A	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	1051						centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			CCAGAGACTCACTGCCCGGGC	0.438												
ZHX1	11244	broad.mit.edu	37	8	124267009	124267009	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:124267009T>C	uc003yqe.2	-	3	1608	c.1178A>G	c.(1177-1179)CAG>CGG	p.Q393R	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Missense_Mutation_p.Q393R|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Missense_Mutation_p.Q393R	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	393	Required for dimerization.|Required for interaction with NFYA.				negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			CAGACCAGGCTGACCAACTAT	0.438												
ATAD2	29028	broad.mit.edu	37	8	124348743	124348743	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:124348743T>C	uc003yqh.3	-	22	3189	c.3081A>G	c.(3079-3081)CAA>CAG	p.Q1027Q	ATAD2_uc011lii.1_Silent_p.Q818Q|ATAD2_uc003yqi.3_RNA	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	1027	Bromo.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			GGTCCATTGGTTGCTTTATTA	0.328												
ATAD2	29028	broad.mit.edu	37	8	124382167	124382167	+	Missense_Mutation	SNP	A	A	T	rs149531312	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:124382167A>T	uc003yqh.3	-	7	933	c.825T>A	c.(823-825)GAT>GAA	p.D275E	ATAD2_uc011lii.1_Missense_Mutation_p.D66E|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.D275E	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	275	Asp-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			cttcatcatcatcatcatcat	0.179												
ANXA13	312	broad.mit.edu	37	8	124705988	124705988	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:124705988T>C	uc003yqu.2	-	7	576	c.503A>G	c.(502-504)AAA>AGA	p.K168R	ANXA13_uc003yqt.2_Missense_Mutation_p.K209R	NM_004306	NP_004297	P27216	ANX13_HUMAN	annexin A13 isoform a	168					cell differentiation	plasma membrane	calcium ion binding|calcium-dependent phospholipid binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(37;2.06e-11)|Ovarian(258;0.00579)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00288)			AGCTAGATCTTTGTCCACGTC	0.353												
FER1L6	654463	broad.mit.edu	37	8	125015417	125015417	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:125015417A>G	uc003yqw.2	+	13	1736	c.1530A>G	c.(1528-1530)GGA>GGG	p.G510G	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	510	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GTAATTTTGGAAACCTGATTG	0.498												
RNF139	11236	broad.mit.edu	37	8	125498142	125498142	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:125498142A>G	uc003yrc.2	+	2	595	c.252A>G	c.(250-252)TCA>TCG	p.S84S		NM_007218	NP_009149	Q8WU17	RN139_HUMAN	ring finger protein 139	84					negative regulation of cell proliferation|regulation of protein ubiquitination	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			kidney(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			CGTACAGCTCAGCCTTTCTGT	0.378									Renal_Cell_Cancer_associated_with_constitutional_translocation_of_chromosome_3			
TATDN1	83940	broad.mit.edu	37	8	125528239	125528239	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:125528239T>C	uc003yrd.2	-	5	277	c.235A>G	c.(235-237)ACA>GCA	p.T79A	TATDN1_uc003yre.2_RNA|TATDN1_uc010mdm.2_Missense_Mutation_p.T32A|TATDN1_uc003yrf.2_Missense_Mutation_p.T79A	NM_032026	NP_114415	Q6P1N9	TATD1_HUMAN	TatD DNase domain containing 1 isoform a	79						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding				0	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			CCACATCTTGTAGGATGACAT	0.294												
KIAA0196	9897	broad.mit.edu	37	8	126087304	126087304	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:126087304T>C	uc003yrt.2	-	8	1243	c.914A>G	c.(913-915)GAA>GGA	p.E305G	KIAA0196_uc011lir.1_Missense_Mutation_p.E157G	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	305					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			TTTGTAAGGTTCCCAAGCATC	0.383												
ADCY8	114	broad.mit.edu	37	8	131812714	131812714	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:131812714T>C	uc003ytd.3	-	15	3274	c.3018A>G	c.(3016-3018)GAA>GAG	p.E1006E	ADCY8_uc010mds.2_Silent_p.E875E	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1006	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGCGCAGGCATTCCACTCCCT	0.443										HNSCC(32;0.087)		
EFR3A	23167	broad.mit.edu	37	8	132997309	132997309	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:132997309T>C	uc003yte.2	+	16	2070	c.1869_splice	c.e16+2	p.K623_splice		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A							plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			GTTAGCAAGGTAATGTATTTA	0.343												
TG	7038	broad.mit.edu	37	8	133879302	133879302	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:133879302C>T	uc003ytw.2	+	1	98	c.57C>T	c.(55-57)GCC>GCT	p.A19A		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	19					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GGGTGTCGGCCAATATCTTCG	0.468												
TG	7038	broad.mit.edu	37	8	133883660	133883660	+	Silent	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:133883660C>A	uc003ytw.2	+	4	383	c.342C>A	c.(340-342)ACC>ACA	p.T114T		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	114	Thyroglobulin type-1 2.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GCACAGACACCTCCTACCTCC	0.517												
TG	7038	broad.mit.edu	37	8	133899319	133899319	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:133899319C>A	uc003ytw.2	+	9	1743	c.1702C>A	c.(1702-1704)CTT>ATT	p.L568I		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	568					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CCTCAAATTCCTTGCTTCTCT	0.443												
TG	7038	broad.mit.edu	37	8	133900283	133900283	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:133900283C>T	uc003ytw.2	+	10	2272	c.2231C>T	c.(2230-2232)GCC>GTC	p.A744V		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	744	Thyroglobulin type-1 7.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		ACGGTGCAGGCCCTGCTCTCT	0.537												
WISP1	8840	broad.mit.edu	37	8	134225274	134225274	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:134225274C>T	uc003yub.2	+	2	313	c.237C>T	c.(235-237)TGC>TGT	p.C79C	WISP1_uc003yuc.2_Silent_p.C79C|WISP1_uc010meb.2_Intron|WISP1_uc010mec.2_Silent_p.C79C|WISP1_uc010med.2_Intron|WISP1_uc003yud.2_5'Flank	NM_003882	NP_003873	O95388	WISP1_HUMAN	WNT1 inducible signaling pathway protein 1	79	IGFBP N-terminal.				cell adhesion|cell-cell signaling|regulation of cell growth|Wnt receptor signaling pathway	extracellular region|soluble fraction	insulin-like growth factor binding			central_nervous_system(1)|kidney(1)	2	all_epithelial(106;5.39e-23)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			GTAAGATGTGCGCTCAGCAGC	0.637												
FAM135B	51059	broad.mit.edu	37	8	139164318	139164318	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:139164318A>G	uc003yuy.2	-	13	2571	c.2400T>C	c.(2398-2400)GAT>GAC	p.D800D	FAM135B_uc003yux.2_Silent_p.D701D|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.D362D|FAM135B_uc003yvb.2_Silent_p.D362D	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	800										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TGCTGTGCATATCTGAAGGTT	0.517										HNSCC(54;0.14)		
COL22A1	169044	broad.mit.edu	37	8	139890062	139890062	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:139890062C>T	uc003yvd.2	-	3	1036	c.589G>A	c.(589-591)GTC>ATC	p.V197I		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	197	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			ACGTGGAAGACGTGGGCGGAC	0.667										HNSCC(7;0.00092)		
EIF2C2	27161	broad.mit.edu	37	8	141542189	141542189	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:141542189G>A	uc003yvn.2	-	19	2574	c.2534C>T	c.(2533-2535)GCG>GTG	p.A845V	EIF2C2_uc010men.2_Missense_Mutation_p.A768V|EIF2C2_uc010meo.2_Missense_Mutation_p.A811V	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	845					mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			AACCTGGACCGCCTTGGCCAG	0.527												
EIF2C2	27161	broad.mit.edu	37	8	141566004	141566004	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:141566004G>A	uc003yvn.2	-	10	1300	c.1260C>T	c.(1258-1260)TAC>TAT	p.Y420Y	EIF2C2_uc010men.2_Silent_p.Y343Y|EIF2C2_uc010meo.2_Silent_p.Y420Y	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	420					mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			CCCTGCCCCCGTAGAGGATGG	0.612												
DENND3	22898	broad.mit.edu	37	8	142151331	142151331	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:142151331G>A	uc003yvy.2	+	4	569	c.291G>A	c.(289-291)ACG>ACA	p.T97T	DENND3_uc003yvw.1_Silent_p.T110T|DENND3_uc003yvx.2_Missense_Mutation_p.R176H|DENND3_uc010mep.2_Silent_p.T110T	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	97										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			ATGGCAAAACGCACCGGGAGT	0.532												
DENND3	22898	broad.mit.edu	37	8	142160983	142160983	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:142160983C>T	uc003yvy.2	+	6	824	c.546C>T	c.(544-546)CCC>CCT	p.P182P	DENND3_uc010mep.2_Silent_p.P195P	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	182	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GAGCAGACCCCGAAAGCCCCA	0.597												
DENND3	22898	broad.mit.edu	37	8	142200505	142200505	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:142200505G>A	uc003yvy.2	+	20	3406	c.3128G>A	c.(3127-3129)CGC>CAC	p.R1043H	DENND3_uc010mep.2_Missense_Mutation_p.R1004H|DENND3_uc003ywa.1_Missense_Mutation_p.R93H|DENND3_uc003ywb.2_Missense_Mutation_p.R93H	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	1043										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CACGGCGGCCGCCTGTGGTGC	0.627												
SLC45A4	57210	broad.mit.edu	37	8	142228816	142228816	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:142228816T>C	uc003ywd.1	-	4	1078	c.770A>G	c.(769-771)GAC>GGC	p.D257G	SLC45A4_uc003ywc.1_Missense_Mutation_p.D257G|SLC45A4_uc010meq.1_Missense_Mutation_p.D255G	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	308					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CAATGCCGAGTCGCTTTTGCT	0.667												
GPR20	2843	broad.mit.edu	37	8	142367700	142367700	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:142367700C>T	uc003ywf.2	-	2	413	c.324G>A	c.(322-324)ACG>ACA	p.T108T		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	108	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			CAGCGAAGCGCGTGGGCAGGG	0.612												
FLJ43860	389690	broad.mit.edu	37	8	142445294	142445294	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:142445294T>C	uc003ywi.2	-	29	3692	c.3611A>G	c.(3610-3612)CAC>CGC	p.H1204R	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	1204							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			GAAGAGGGTGTGCAGTAGCCG	0.667												
LYNX1	66004	broad.mit.edu	37	8	143856711	143856711	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:143856711G>A	uc003yxc.1	-	4	495	c.225C>T	c.(223-225)GGC>GGT	p.G75G	LYNX1_uc003yxb.2_Intron|LYNX1_uc003yxd.1_Silent_p.G75G|LYNX1_uc003yxe.1_Silent_p.G75G	NM_177476	NP_803429	Q9BZG9	LYNX1_HUMAN	Ly-6 neurotoxin-like protein 1 isoform c	75	UPAR/Ly6.					anchored to membrane|plasma membrane					0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GCTTGGAGTAGCCATCATACA	0.667												
LY6D	8581	broad.mit.edu	37	8	143867011	143867011	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:143867011T>C	uc003yxf.1	-	2	221	c.145A>G	c.(145-147)AAC>GAC	p.N49D		NM_003695	NP_003686	Q14210	LY6D_HUMAN	lymphocyte antigen 6 complex, locus D precursor	49	UPAR/Ly6.				cell adhesion	anchored to membrane|membrane fraction|plasma membrane	protein binding				0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CCACCTGTGTTCGTGGTCTTG	0.642												
CYP11B2	1585	broad.mit.edu	37	8	143994741	143994741	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:143994741C>T	uc003yxk.1	-	6	1084	c.1081G>A	c.(1081-1083)GAG>AAG	p.E361K		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	361					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	AAGGGCAGCTCGGTGGTTGCC	0.687									Familial_Hyperaldosteronism_type_I			
PUF60	22827	broad.mit.edu	37	8	144900634	144900634	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:144900634A>G	uc003yzs.2	-	6	483	c.419T>C	c.(418-420)CTG>CCG	p.L140P	PUF60_uc003yzr.2_Missense_Mutation_p.L80P|PUF60_uc003yzt.2_Missense_Mutation_p.L123P|PUF60_uc003yzq.2_Missense_Mutation_p.L97P|PUF60_uc003yzu.1_Missense_Mutation_p.L129P	NM_078480	NP_510965	Q9UHX1	PUF60_HUMAN	poly-U binding splicing factor 60KDa isoform a	140	RRM 1.|Inhibits homodimerization.|Inhibits transcriptional repression, interaction with ERCC3 and apoptosis induction.				apoptosis|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nucleus|ribonucleoprotein complex	DNA binding|nucleotide binding|protein binding|RNA binding				0	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;6.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			GTCCTCCCCCAGCTCATAGTA	0.627												
EPPK1	83481	broad.mit.edu	37	8	144945718	144945718	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:144945718T>C	uc003zaa.1	-	1	1717	c.1704A>G	c.(1702-1704)ACA>ACG	p.T568T		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	568	Plectin 10.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCTCTCCTGGTGTCACGGTGT	0.647												
PLEC	5339	broad.mit.edu	37	8	144994121	144994121	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:144994121T>C	uc003zaf.1	-	32	10449	c.10279A>G	c.(10279-10281)ACC>GCC	p.T3427A	PLEC_uc003zab.1_Missense_Mutation_p.T3290A|PLEC_uc003zac.1_Missense_Mutation_p.T3294A|PLEC_uc003zad.2_Missense_Mutation_p.T3290A|PLEC_uc003zae.1_Missense_Mutation_p.T3258A|PLEC_uc003zag.1_Missense_Mutation_p.T3268A|PLEC_uc003zah.2_Missense_Mutation_p.T3276A|PLEC_uc003zaj.2_Missense_Mutation_p.T3317A	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3427	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						TCCACGATGGTAATGAGAATC	0.627												
PLEC	5339	broad.mit.edu	37	8	145005812	145005812	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145005812G>A	uc003zaf.1	-	19	2775	c.2605C>T	c.(2605-2607)CGG>TGG	p.R869W	PLEC_uc003zab.1_Missense_Mutation_p.R732W|PLEC_uc003zac.1_Missense_Mutation_p.R736W|PLEC_uc003zad.2_Missense_Mutation_p.R732W|PLEC_uc003zae.1_Missense_Mutation_p.R700W|PLEC_uc003zag.1_Missense_Mutation_p.R710W|PLEC_uc003zah.2_Missense_Mutation_p.R718W|PLEC_uc003zaj.2_Missense_Mutation_p.R759W	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	869	Spectrin 3.|Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						TCGGCCTCCCGCACATCTGAG	0.662												
GRINA	2907	broad.mit.edu	37	8	145066997	145066997	+	Silent	SNP	C	C	T	rs139058041	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145066997C>T	uc003zan.1	+	7	1270	c.1104C>T	c.(1102-1104)CGC>CGT	p.R368R	GRINA_uc003zao.1_Silent_p.R368R|GRINA_uc003zap.1_Silent_p.R368R	NM_001009184	NP_001009184	Q7Z429	GRINA_HUMAN	glutamate receptor, ionotropic, N-methyl	368						integral to membrane				central_nervous_system(1)	1	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCATTGGCCGCGCCAAGGAGT	0.607												
GPAA1	8733	broad.mit.edu	37	8	145139749	145139749	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145139749G>A	uc003zax.2	+	8	1245	c.1135G>A	c.(1135-1137)GGC>AGC	p.G379S	GPAA1_uc003zav.1_Missense_Mutation_p.G257S|GPAA1_uc003zaw.1_Missense_Mutation_p.G319S	NM_003801	NP_003792	O43292	GPAA1_HUMAN	glycosylphosphatidylinositol anchor attachment	379	Helical; (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|protein complex assembly|protein retention in ER lumen	GPI-anchor transamidase complex	tubulin binding				0	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.02e-40)|all cancers(56;2.11e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCCCGCTGTCGGCTTCTTGCT	0.602												
FBXL6	26233	broad.mit.edu	37	8	145579255	145579255	+	Missense_Mutation	SNP	T	T	C	rs140699050		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145579255T>C	uc003zcb.2	-	9	1581	c.1556A>G	c.(1555-1557)TAC>TGC	p.Y519C	C8ORFK29_uc011llb.1_5'Flank|C8ORFK29_uc010mfw.2_5'Flank|C8ORFK29_uc003zby.3_5'UTR|FBXL6_uc003zbz.2_Missense_Mutation_p.Y246C|FBXL6_uc003zca.2_Missense_Mutation_p.Y513C|FBXL6_uc010mfx.2_Missense_Mutation_p.Y280C|GPR172A_uc003zcc.1_5'Flank|GPR172A_uc003zcd.1_5'Flank|GPR172A_uc003zce.1_5'Flank|GPR172A_uc010mfy.1_5'Flank|GPR172A_uc003zcf.1_5'Flank|GPR172A_uc011llc.1_5'Flank	NM_012162	NP_036294	Q8N531	FBXL6_HUMAN	F-box and leucine-rich repeat protein 6 isoform	519					proteolysis		ubiquitin-protein ligase activity			ovary(1)|lung(1)	2	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			CAGGCCCCGGTAGGCCCGCTT	0.672												
CPSF1	29894	broad.mit.edu	37	8	145619366	145619366	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145619366C>T	uc003zcj.2	-	34	3896	c.3821G>A	c.(3820-3822)CGC>CAC	p.R1274H	MIR939_hsa-mir-939|MI0005761_RNA	NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	1274					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			GTTGCGGTCGCGGTCAGACAC	0.682												
SLC39A4	55630	broad.mit.edu	37	8	145640188	145640188	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145640188G>A	uc003zcq.2	-	5	997	c.897C>T	c.(895-897)GCC>GCT	p.A299A	SLC39A4_uc003zcm.1_5'Flank|SLC39A4_uc003zcn.2_5'Flank|SLC39A4_uc003zco.2_Silent_p.A23A|SLC39A4_uc003zcp.2_Silent_p.A274A	NM_130849	NP_570901	Q6P5W5	S39A4_HUMAN	solute carrier family 39 (zinc transporter),	299	Extracellular (Potential).					cytoplasmic membrane-bounded vesicle|integral to membrane|recycling endosome membrane	zinc ion transmembrane transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;1.12e-40)|all cancers(56;8.17e-36)|BRCA - Breast invasive adenocarcinoma(115;0.0407)|Colorectal(110;0.055)			GTTGGAGCAGGGCAGGGCTCA	0.662												
NFKBIL2	4796	broad.mit.edu	37	8	145655794	145655794	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145655794G>A	uc011llg.1	-	25	3951	c.3936C>T	c.(3934-3936)GGC>GGT	p.G1312G	VPS28_uc003zcs.1_5'Flank|VPS28_uc003zct.1_5'Flank	NM_013432	NP_038460	Q96HA7	TONSL_HUMAN	NF-kappa-B inhibitor-like protein 2	1312					cytoplasmic sequestering of transcription factor|double-strand break repair via homologous recombination|replication fork processing	cytoplasm|nuclear replication fork	histone binding|transcription corepressor activity				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			CACCTGACAGGCCAAGGAAGC	0.602												
MFSD3	113655	broad.mit.edu	37	8	145735779	145735779	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145735779T>C	uc003zdi.1	+	2	884	c.719T>C	c.(718-720)CTG>CCG	p.L240P		NM_138431	NP_612440	Q96ES6	MFSD3_HUMAN	major facilitator superfamily domain containing	240	Leu-rich.				transmembrane transport	integral to membrane				central_nervous_system(2)	2	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			CCTCTTCTCCTGCTGGACCAC	0.642												
ARHGAP39	80728	broad.mit.edu	37	8	145773654	145773654	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145773654C>T	uc003zdt.1	-	6	1371	c.816G>A	c.(814-816)CCG>CCA	p.P272P	ARHGAP39_uc011llk.1_Silent_p.P272P|ARHGAP39_uc003zds.1_Silent_p.P272P	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	272	Pro-rich.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						GGAAGGGTGACGGCCTCCTCT	0.716												
ARHGAP39	80728	broad.mit.edu	37	8	145780968	145780968	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145780968G>A	uc003zdt.1	-	5	1127	c.572C>T	c.(571-573)GCG>GTG	p.A191V	ARHGAP39_uc011llk.1_Missense_Mutation_p.A191V|ARHGAP39_uc003zds.1_Missense_Mutation_p.A191V	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	191					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						CTGGCCGTCCGCACTGTAATC	0.493												
ZNF34	80778	broad.mit.edu	37	8	145999512	145999512	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145999512A>G	uc003zdy.3	-	6	924	c.822T>C	c.(820-822)ACT>ACC	p.T274T	ZNF34_uc010mgb.2_Silent_p.T171T|ZNF34_uc003zdx.3_Silent_p.T253T	NM_030580	NP_085057	Q8IZ26	ZNF34_HUMAN	zinc finger protein 34	274					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.221)	OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;5.18e-38)|all cancers(56;4.41e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.0179)		GCTTCTCTTCAGTGTGAAGCC	0.463												
ZNF34	80778	broad.mit.edu	37	8	145999668	145999668	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145999668T>C	uc003zdy.3	-	6	768	c.666A>G	c.(664-666)ACA>ACG	p.T222T	ZNF34_uc010mgb.2_Silent_p.T119T|ZNF34_uc003zdx.3_Silent_p.T201T	NM_030580	NP_085057	Q8IZ26	ZNF34_HUMAN	zinc finger protein 34	222					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.221)	OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;5.18e-38)|all cancers(56;4.41e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.0179)		GAACTGTATTTGTTTTTTTTG	0.353												
ZNF7	7553	broad.mit.edu	37	8	146054477	146054477	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:146054477T>C	uc003zeg.3	+	2	140	c.3_splice	c.e2+2	p.M1_splice	ZNF7_uc010mge.2_Splice_Site_p.M1_splice|ZNF7_uc011lln.1_Splice_Site|ZNF7_uc003zeh.2_Splice_Site_p.M1_splice|ZNF7_uc003zej.2_Splice_Site_p.M1_splice	NM_003416	NP_003407	P17097	ZNF7_HUMAN	zinc finger protein 7						multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.0812)|Ovarian(118;0.0822)|Acute lymphoblastic leukemia(644;0.143)	Epithelial(56;8.75e-39)|OV - Ovarian serous cystadenocarcinoma(54;1.13e-38)|all cancers(56;8.48e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;2.11e-07)		AGCCTCATGGTAGGAAGCTTG	0.592												
ZNF250	58500	broad.mit.edu	37	8	146108158	146108158	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:146108158T>C	uc003zeq.3	-	6	542	c.425A>G	c.(424-426)CAA>CGA	p.Q142R	COMMD5_uc010mgf.2_Intron|ZNF250_uc003zer.3_Missense_Mutation_p.Q137R|ZNF250_uc010mgg.2_Missense_Mutation_p.Q137R	NM_021061	NP_066405	P15622	ZN250_HUMAN	zinc finger protein 250 isoform a	142					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Epithelial(56;2.53e-38)|OV - Ovarian serous cystadenocarcinoma(54;4.07e-38)|all cancers(56;2.27e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.0654)		AATCACTGTTTGCTCTGAAAT	0.393												
FOXD4	2298	broad.mit.edu	37	9	117563	117563	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:117563T>C	uc003zfz.2	-	1	855	c.557A>G	c.(556-558)GAC>GGC	p.D186G		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	forkhead box D4	186	Fork-head.				axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		GTCGAACATGTCCTGGGAGGC	0.662												
DOCK8	81704	broad.mit.edu	37	9	334363	334363	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:334363A>G	uc003zgf.2	+	11	1376	c.1264A>G	c.(1264-1266)ACT>GCT	p.T422A	DOCK8_uc011lls.1_Missense_Mutation_p.T422A|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Missense_Mutation_p.T354A|DOCK8_uc003zgg.2_Missense_Mutation_p.T354A|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	422	DHR-1.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		GAGGGAGGTAACTGATGTGGA	0.547												
DOCK8	81704	broad.mit.edu	37	9	382641	382641	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:382641C>A	uc003zgf.2	+	22	2846	c.2734C>A	c.(2734-2736)CAC>AAC	p.H912N	DOCK8_uc010mgu.2_Missense_Mutation_p.H214N|DOCK8_uc010mgv.2_Missense_Mutation_p.H844N|DOCK8_uc010mgw.1_Missense_Mutation_p.H214N|DOCK8_uc003zgk.2_Missense_Mutation_p.H370N	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	912					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		CGCGGGGACACACTCCGCAGC	0.517												
DMRT1	1761	broad.mit.edu	37	9	894037	894037	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:894037T>C	uc003zgv.2	+	3	813	c.664T>C	c.(664-666)TAC>CAC	p.Y222H	DMRT1_uc003zgu.1_Missense_Mutation_p.Y222H	NM_021951	NP_068770	Q9Y5R6	DMRT1_HUMAN	doublesex and mab-3 related transcription factor	222					cell differentiation|male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(10;2.66e-10)|Lung NSC(10;2.82e-10)|Breast(48;0.232)		Lung(218;0.037)		GTTTCCTTATTACAACAATCT	0.537											OREG0019071	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
DMRT1	1761	broad.mit.edu	37	9	916875	916875	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:916875A>G	uc003zgv.2	+	4	1084	c.935A>G	c.(934-936)GAT>GGT	p.D312G		NM_021951	NP_068770	Q9Y5R6	DMRT1_HUMAN	doublesex and mab-3 related transcription factor	312					cell differentiation|male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(10;2.66e-10)|Lung NSC(10;2.82e-10)|Breast(48;0.232)		Lung(218;0.037)		ACTTTTGAGGATGCTCCCTCT	0.552												
SMARCA2	6595	broad.mit.edu	37	9	2161726	2161726	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:2161726T>C	uc003zhc.2	+	28	4121	c.4022T>C	c.(4021-4023)GTA>GCA	p.V1341A	SMARCA2_uc003zhd.2_Missense_Mutation_p.V1341A|SMARCA2_uc010mha.2_Missense_Mutation_p.V1274A|SMARCA2_uc011llw.1_Missense_Mutation_p.V45A|SMARCA2_uc003zhf.2_Missense_Mutation_p.V5A|SMARCA2_uc011llx.1_Missense_Mutation_p.V5A|SMARCA2_uc003zhe.2_Missense_Mutation_p.V47A|SMARCA2_uc003zhg.2_Missense_Mutation_p.V5A|SMARCA2_uc010mhb.2_Missense_Mutation_p.V29A	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	1341					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		GAAGAGGAAGTACGGCTTAAG	0.433												
RFX3	5991	broad.mit.edu	37	9	3262957	3262957	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:3262957C>T	uc003zhr.2	-	14	1895	c.1583G>A	c.(1582-1584)CGT>CAT	p.R528H	RFX3_uc010mhd.2_Missense_Mutation_p.R528H|RFX3_uc003zhs.1_Missense_Mutation_p.R528H	NM_134428	NP_602304	P48380	RFX3_HUMAN	regulatory factor X3 isoform b	528					cell maturation|ciliary cell motility|cilium assembly|cilium movement involved in determination of left/right asymmetry|endocrine pancreas development|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|regulation of insulin secretion	nuclear chromatin	protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4				GBM - Glioblastoma multiforme(50;0.00124)|Lung(2;0.0337)		AAAGTCGACACGGTTGAGGTC	0.443												
GLIS3	169792	broad.mit.edu	37	9	4118618	4118618	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:4118618C>T	uc003zhw.1	-	3	589	c.395G>A	c.(394-396)CGG>CAG	p.R132Q	GLIS3_uc003zhx.1_Missense_Mutation_p.R287Q|GLIS3_uc003zic.1_Missense_Mutation_p.R287Q|GLIS3_uc003zie.1_Missense_Mutation_p.R287Q|GLIS3_uc010mhh.1_Missense_Mutation_p.R162Q|GLIS3_uc003zid.1_Missense_Mutation_p.R65Q|GLIS3_uc010mhi.1_Missense_Mutation_p.R94Q|GLIS3_uc003zif.1_Missense_Mutation_p.R65Q|GLIS3_uc003zig.1_Missense_Mutation_p.R131Q|GLIS3_uc003zih.1_Missense_Mutation_p.R65Q|GLIS3_uc003zhy.1_Missense_Mutation_p.R65Q|GLIS3_uc003zhz.1_Missense_Mutation_p.R65Q|GLIS3_uc003zib.1_Missense_Mutation_p.R131Q|GLIS3_uc010mhg.1_Missense_Mutation_p.R65Q	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	132	Ser-rich.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		GGATGAGTGCCGAGGACTAGG	0.542												
ERMP1	79956	broad.mit.edu	37	9	5811260	5811260	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:5811260T>G	uc003zjm.1	-	7	1232	c.1178A>C	c.(1177-1179)AAG>ACG	p.K393T	ERMP1_uc011lme.1_RNA|ERMP1_uc010mhs.1_Missense_Mutation_p.K7T	NM_024896	NP_079172	Q7Z2K6	ERMP1_HUMAN	aminopeptidase Fxna	393	Extracellular (Potential).				proteolysis	endoplasmic reticulum membrane|integral to membrane	metal ion binding|metallopeptidase activity			ovary(1)	1		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00115)|Lung(218;0.111)		ATGTCGATACTTAGAAGCAGC	0.363												
KIAA2026	158358	broad.mit.edu	37	9	5929149	5929149	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:5929149T>C	uc003zjq.3	-	6	2609	c.2393A>G	c.(2392-2394)TAT>TGT	p.Y798C	KIAA2026_uc010mht.2_5'UTR	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	798										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		CCTCCGATGATACCATTTTCC	0.299												
KIAA2026	158358	broad.mit.edu	37	9	5968410	5968410	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:5968410T>C	uc003zjq.3	-	3	2037	c.1821A>G	c.(1819-1821)CCA>CCG	p.P607P		NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	607										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		TTATTTCACCTGGACTAAGAG	0.368												
KIAA2026	158358	broad.mit.edu	37	9	5988525	5988525	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:5988525G>A	uc003zjq.3	-	2	830	c.614C>T	c.(613-615)ACG>ATG	p.T205M		NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	205										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		AACTGCTATCGTTGTCTTTTC	0.448												
RANBP6	26953	broad.mit.edu	37	9	6012876	6012876	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:6012876A>G	uc003zjr.2	-	1	2743	c.2732T>C	c.(2731-2733)GTA>GCA	p.V911A	RANBP6_uc011lmf.1_Missense_Mutation_p.V559A|RANBP6_uc003zjs.2_Missense_Mutation_p.V499A	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	911	HEAT 6.				protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		AAAATATTCTACATATTTAAA	0.433												
UHRF2	115426	broad.mit.edu	37	9	6486850	6486850	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:6486850T>C	uc003zjy.2	+	9	1762	c.1422T>C	c.(1420-1422)CAT>CAC	p.H474H	UHRF2_uc003zjz.2_RNA|UHRF2_uc003zka.1_Silent_p.H251H|UHRF2_uc003zkb.2_RNA	NM_152896	NP_690856	Q96PU4	UHRF2_HUMAN	ubiquitin-like with PHD and ring finger domains	474	YDG.|Methyl-CpG binding and interaction with HDAC1.				cell cycle|cell differentiation|cell proliferation|protein autoubiquitination|regulation of cell cycle|ubiquitin-dependent protein catabolic process	nucleus	DNA binding|histone binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0392)|Lung(218;0.129)		ACAGACCCCATGTTGGTGGAA	0.393												
GLDC	2731	broad.mit.edu	37	9	6536071	6536071	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:6536071G>A	uc003zkc.2	-	23	3024	c.2831C>T	c.(2830-2832)CCG>CTG	p.P944L		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	944					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CACCTTCAGCGGATTGACCCT	0.512												
KDM4C	23081	broad.mit.edu	37	9	6984274	6984274	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:6984274T>G	uc003zkh.2	+	10	1804	c.1224T>G	c.(1222-1224)GAT>GAG	p.D408E	KDM4C_uc010mhu.2_Missense_Mutation_p.D430E|KDM4C_uc011lmi.1_Missense_Mutation_p.D408E|KDM4C_uc011lmj.1_RNA|KDM4C_uc003zkg.2_Missense_Mutation_p.D408E|KDM4C_uc011lmk.1_Missense_Mutation_p.D227E|KDM4C_uc011lml.1_Missense_Mutation_p.D95E	NM_015061	NP_055876	Q9H3R0	KDM4C_HUMAN	jumonji domain containing 2C isoform 1	408					positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	nuclear chromatin	androgen receptor binding|enzyme binding|histone demethylase activity (H3-K9 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1						CAGTCACAGATGACCTCAAGG	0.512												
PTPRD	5789	broad.mit.edu	37	9	8500960	8500960	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:8500960A>G	uc003zkk.2	-	23	2633	c.1922T>C	c.(1921-1923)ATT>ACT	p.I641T	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.I641T|PTPRD_uc003zkm.2_Missense_Mutation_p.I628T|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	641	Fibronectin type-III 4.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TTCAGTGATAATGCCATTCTG	0.463										TSP Lung(15;0.13)		
PTPRD	5789	broad.mit.edu	37	9	8518133	8518133	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:8518133C>T	uc003zkk.2	-	20	1969	c.1258G>A	c.(1258-1260)GCC>ACC	p.A420T	PTPRD_uc003zkp.2_Missense_Mutation_p.A420T|PTPRD_uc003zkq.2_Missense_Mutation_p.A420T|PTPRD_uc003zkr.2_Missense_Mutation_p.A414T|PTPRD_uc003zks.2_Missense_Mutation_p.A410T|PTPRD_uc003zkl.2_Missense_Mutation_p.A420T|PTPRD_uc003zkm.2_Missense_Mutation_p.A407T|PTPRD_uc003zkn.2_Missense_Mutation_p.A420T|PTPRD_uc003zko.2_Missense_Mutation_p.A417T	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	420	Fibronectin type-III 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TCCCTCGGGGCACTGGATGGT	0.512										TSP Lung(15;0.13)		
PTPRD	5789	broad.mit.edu	37	9	8521543	8521543	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:8521543C>T	uc003zkk.2	-	19	1406	c.695G>A	c.(694-696)CGC>CAC	p.R232H	PTPRD_uc003zkp.2_Missense_Mutation_p.R232H|PTPRD_uc003zkq.2_Missense_Mutation_p.R232H|PTPRD_uc003zkr.2_Missense_Mutation_p.R226H|PTPRD_uc003zks.2_Missense_Mutation_p.R222H|PTPRD_uc003zkl.2_Missense_Mutation_p.R232H|PTPRD_uc003zkm.2_Missense_Mutation_p.R219H|PTPRD_uc003zkn.2_Missense_Mutation_p.R232H|PTPRD_uc003zko.2_Missense_Mutation_p.R229H	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	232	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TGGGACACGGCGAACTGGAAC	0.448										TSP Lung(15;0.13)		
FREM1	158326	broad.mit.edu	37	9	14746967	14746967	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:14746967T>C	uc003zlm.2	-	34	6682	c.6092A>G	c.(6091-6093)TAT>TGT	p.Y2031C	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Missense_Mutation_p.Y567C	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	2031					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		ATTGCACTGATACAGCTTCTG	0.493												
C9orf93	203238	broad.mit.edu	37	9	15777690	15777690	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:15777690T>C	uc003zmd.2	+	19	3079	c.2764T>C	c.(2764-2766)TGT>CGT	p.C922R	C9orf93_uc003zme.2_Missense_Mutation_p.C837R|C9orf93_uc011lmu.1_Missense_Mutation_p.C930R|C9orf93_uc003zmf.1_Missense_Mutation_p.C230R	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	922											0				GBM - Glioblastoma multiforme(50;4.84e-07)		GGTAATGGAATGTATACCTCT	0.398												
HAUS6	54801	broad.mit.edu	37	9	19083042	19083042	+	Splice_Site	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:19083042C>A	uc003znk.2	-	8	953	c.700_splice	c.e8-1	p.V234_splice	HAUS6_uc011lmz.1_Splice_Site|HAUS6_uc003znl.1_Splice_Site_p.V98_splice|HAUS6_uc003znm.1_Splice_Site	NM_017645	NP_060115	Q7Z4H7	HAUS6_HUMAN	HAUS augmin-like complex, subunit 6						cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|nucleus|spindle				ovary(2)	2						AAGACCGAACCTTTGGAAACA	0.328												
KIAA1797	54914	broad.mit.edu	37	9	20923715	20923715	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:20923715T>C	uc003zog.1	+	27	3272	c.2909T>C	c.(2908-2910)GTC>GCC	p.V970A	KIAA1797_uc003zoh.1_Missense_Mutation_p.V406A	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	970						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		CTTGCTGTCGTCGTATCTAGA	0.438												
IFNB1	3456	broad.mit.edu	37	9	21077708	21077708	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:21077708T>G	uc003zok.2	-	1	236	c.161A>C	c.(160-162)AAG>ACG	p.K54T		NM_002176	NP_002167	P01574	IFNB_HUMAN	interferon, beta 1, fibroblast precursor	54					activation of caspase activity|B cell proliferation|blood coagulation|cellular response to exogenous dsRNA|defense response to virus|induction of apoptosis|natural killer cell activation|negative regulation of cell proliferation|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of viral genome replication|negative regulation of viral transcription|negative regulation of virion penetration into host cell|positive regulation of innate immune response|positive regulation of transcription from RNA polymerase II promoter|regulation of MHC class I biosynthetic process|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding|transcription corepressor activity			ovary(1)|breast(1)|kidney(1)	3				GBM - Glioblastoma multiforme(5;7.45e-142)|Lung(24;2.42e-17)|LUSC - Lung squamous cell carcinoma(38;7.17e-11)	Interferon beta-1a(DB00060)|Interferon beta-1b(DB00068)	CATCCTGTCCTTGAGGCAGTA	0.478												
IFNA17	3451	broad.mit.edu	37	9	21227977	21227977	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:21227977A>G	uc003zos.1	-	1	245	c.196T>C	c.(196-198)TTT>CTT	p.F66L	IFNA14_uc003zoo.1_Intron	NM_021268	NP_067091	P01571	IFN17_HUMAN	interferon, alpha 17 precursor	66					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				Lung(24;2.13e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		TTGCCATCAAACTCCTCCTGG	0.507												
IFNA5	3442	broad.mit.edu	37	9	21304924	21304924	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:21304924T>C	uc011lnh.1	-	1	332	c.332A>G	c.(331-333)GAA>GGA	p.E111G		NM_002169	NP_002160	P01569	IFNA5_HUMAN	interferon, alpha 5 precursor	111					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			ovary(1)	1				Lung(24;2.34e-24)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		CTGGTAAAGTTCAGTGTAGAA	0.468												
IFNA1	3439	broad.mit.edu	37	9	21441040	21441041	+	Missense_Mutation	DNP	AA	AA	GG			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:21441040_21441041AA>GG	uc003zpd.1	+	1	601_602	c.534_535AA>GG	c.(532-537)TCAACA>TCGGCA	p.T179A		NM_024013	NP_076918	P01562	IFNA1_HUMAN	interferon, alpha 1 precursor	179					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			ovary(2)	2				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.0173)		TCTCTTTATCAACAAACTTGCA	0.401												
PLAA	9373	broad.mit.edu	37	9	26920381	26920381	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:26920381A>G	uc003zqd.2	-	8	1466	c.1041T>C	c.(1039-1041)GGT>GGC	p.G347G	PLAA_uc003zqe.2_Silent_p.G347G	NM_001031689	NP_001026859	Q9Y263	PLAP_HUMAN	phospholipase A2-activating protein	347					phospholipid metabolic process|signal transduction		phospholipase A2 activator activity				0		all_neural(3;3.53e-10)|Glioma(3;2.71e-09)		Lung(218;1.32e-05)|LUSC - Lung squamous cell carcinoma(38;0.00011)		CTTCTCTAGTACCTTAAAATA	0.323												
LRRC19	64922	broad.mit.edu	37	9	26998038	26998038	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:26998038T>C	uc003zqh.2	-	3	394	c.283A>G	c.(283-285)AAC>GAC	p.N95D	IFT74_uc010mja.2_Intron|IFT74_uc010mjb.2_Intron|IFT74_uc003zqf.3_Intron|IFT74_uc003zqg.3_Intron	NM_022901	NP_075052	Q9H756	LRC19_HUMAN	leucine rich repeat containing 19 precursor	95	Extracellular (Potential).|LRR 2.					integral to membrane					0		all_neural(11;1.81e-09)		Lung(218;1.06e-05)|LUSC - Lung squamous cell carcinoma(38;0.0001)		CTGGAGAGGTTACCAAAACCG	0.318												
IFT74	80173	broad.mit.edu	37	9	27009025	27009025	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:27009025A>G	uc010mja.2	+	9	722	c.595A>G	c.(595-597)AAA>GAA	p.K199E	IFT74_uc010mjb.2_Missense_Mutation_p.K199E|IFT74_uc003zqf.3_Missense_Mutation_p.K199E|IFT74_uc003zqg.3_Missense_Mutation_p.K199E	NM_001099223	NP_001092693	Q96LB3	IFT74_HUMAN	coiled-coil domain containing 2 isoform a	199	Potential.					cytoplasmic membrane-bounded vesicle|intraflagellar transport particle B|microtubule-based flagellum				skin(1)	1		all_neural(11;2.36e-10)		Lung(218;1.4e-05)|LUSC - Lung squamous cell carcinoma(38;0.000114)		TAGGAAAGAAAAACAAATCAG	0.294												
DDX58	23586	broad.mit.edu	37	9	32485235	32485235	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:32485235T>C	uc003zra.2	-	10	1576	c.1418A>G	c.(1417-1419)TAC>TGC	p.Y473C	DDX58_uc010mjj.2_RNA|DDX58_uc010mjk.1_Missense_Mutation_p.Y428C|DDX58_uc011lnr.1_Missense_Mutation_p.Y270C|DDX58_uc010mji.2_Missense_Mutation_p.Y402C	NM_014314	NP_055129	O95786	DDX58_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	473					detection of virus|innate immune response|negative regulation of type I interferon production|positive regulation of defense response to virus by host|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter	cytosol	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|protein binding|zinc ion binding			ovary(2)|liver(1)|pancreas(1)	4			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;0.00056)		AGCTATGATGTATTTAAATTT	0.378												
APTX	54840	broad.mit.edu	37	9	32987768	32987768	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:32987768A>G	uc003zrm.2	-	3	454	c.257T>C	c.(256-258)GTT>GCT	p.V86A	APTX_uc010mjm.2_Intron|APTX_uc003zrj.2_5'UTR|APTX_uc011lns.1_Intron|APTX_uc003zrl.2_Intron|APTX_uc003zrn.2_5'UTR|APTX_uc003zro.2_Missense_Mutation_p.V86A|APTX_uc003zrp.2_5'UTR|APTX_uc003zrq.2_5'UTR|APTX_uc003zrr.2_Intron|APTX_uc003zrs.2_Missense_Mutation_p.V86A|APTX_uc003zrt.2_5'UTR|APTX_uc003zru.2_Intron|APTX_uc003zrv.2_Missense_Mutation_p.V100A|APTX_uc003zrw.2_Missense_Mutation_p.V86A|APTX_uc003zrx.2_Missense_Mutation_p.V86A|APTX_uc003zry.2_Missense_Mutation_p.V86A|APTX_uc003zrz.2_Intron|APTX_uc003zsa.1_Intron|APTX_uc003zsb.1_Intron|APTX_uc003zsc.1_Intron	NM_175072	NP_778242	Q7Z2E3	APTX_HUMAN	aprataxin isoform c	100	Interactions with ADPRT and NCL.				cell death|double-strand break repair|regulation of protein stability|response to hydrogen peroxide|single strand break repair	chromatin|nucleolus|nucleoplasm	chromatin binding|damaged DNA binding|DNA 5'-adenosine monophosphate hydrolase activity|double-stranded DNA binding|double-stranded RNA binding|phosphoglycolate phosphatase activity|phosphoprotein binding|polynucleotide 3'-phosphatase activity|protein N-terminus binding|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0302)	GBM - Glioblastoma multiforme(74;0.105)		CATGTGGAGAACCTGGCCAGG	0.458								Direct_reversal_of_damage|Editing_and_processing_nucleases				
DNAJA1	3301	broad.mit.edu	37	9	33038770	33038770	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:33038770A>G	uc003zsd.1	+	9	1246	c.1063A>G	c.(1063-1065)ACT>GCT	p.T355A	DNAJA1_uc011lnt.1_Missense_Mutation_p.T198A	NM_001539	NP_001530	P31689	DNJA1_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 1	355					protein folding|response to heat|response to unfolded protein	membrane	ATP binding|heat shock protein binding|low-density lipoprotein particle receptor binding|metal ion binding|unfolded protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.0227)	GBM - Glioblastoma multiforme(74;0.102)		AGTGGAAGAGACTGATGAGAT	0.443												
SMU1	55234	broad.mit.edu	37	9	33053213	33053213	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:33053213C>T	uc003zsf.1	-	10	1306	c.1198G>A	c.(1198-1200)GTC>ATC	p.V400I	SMU1_uc010mjo.1_Missense_Mutation_p.V400I|SMU1_uc010mjp.1_Intron|SMU1_uc011lnu.1_Missense_Mutation_p.V239I	NM_018225	NP_060695	Q2TAY7	SMU1_HUMAN	smu-1 suppressor of mec-8 and unc-52 homolog	400	WD 5.					cytoplasm|nucleus				ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0227)	GBM - Glioblastoma multiforme(74;0.11)		ACACTGTTGACGGTAATATCT	0.438												
B4GALT1	2683	broad.mit.edu	37	9	33120581	33120581	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:33120581A>G	uc003zsg.2	-	3	861	c.672T>C	c.(670-672)CGT>CGC	p.R224R		NM_001497	NP_001488	P15291	B4GT1_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	224	Lumenal (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	basolateral plasma membrane|brush border membrane|desmosome|external side of plasma membrane|extracellular region|glycocalyx|Golgi cisterna membrane|Golgi trans cisterna|integral to membrane	alpha-tubulin binding|beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|beta-tubulin binding|lactose synthase activity|metal ion binding|N-acetyllactosamine synthase activity|protein binding|protein homodimerization activity				0			LUSC - Lung squamous cell carcinoma(29;0.0084)	GBM - Glioblastoma multiforme(74;0.121)	N-Acetyl-D-glucosamine(DB00141)	GGAGCTTAGCACGATTGAATA	0.448												
AQP7	364	broad.mit.edu	37	9	33386157	33386157	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:33386157A>G	uc003zst.2	-	6	615	c.443T>C	c.(442-444)GTG>GCG	p.V148A	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_Missense_Mutation_p.V91A|AQP7_uc010mjs.2_Missense_Mutation_p.V56A|AQP7_uc010mjt.2_Missense_Mutation_p.V56A|AQP7_uc011lnx.1_Missense_Mutation_p.V148A|AQP7_uc011lny.1_Missense_Mutation_p.V147A|AQP7_uc003zss.3_Missense_Mutation_p.V56A|AQP7_uc011lnz.1_Missense_Mutation_p.V56A|AQP7_uc011loa.1_Intron	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	148	Extracellular (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		GGGACCGGTCACCATCAGCTG	0.572												
UBAP2	55833	broad.mit.edu	37	9	33948577	33948577	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:33948577G>A	uc003ztq.1	-	13	1178	c.1065C>T	c.(1063-1065)GTC>GTT	p.V355V	UBAP2_uc011loc.1_Silent_p.V264V|UBAP2_uc011lod.1_Silent_p.V88V|UBAP2_uc011loe.1_Silent_p.V110V|UBAP2_uc011lof.1_Silent_p.V280V|UBAP2_uc011log.1_Silent_p.V301V|UBAP2_uc003ztr.2_Silent_p.V227V|UBAP2_uc003zts.2_5'UTR	NM_018449	NP_060919	Q5T6F2	UBAP2_HUMAN	ubiquitin associated protein 2	355										ovary(3)	3			LUSC - Lung squamous cell carcinoma(29;0.00575)	GBM - Glioblastoma multiforme(74;0.168)		CTGAGCCAAGGACGGATGACT	0.413												
C9orf23	138716	broad.mit.edu	37	9	34611198	34611198	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:34611198A>G	uc003zuu.2	-	2	377	c.96T>C	c.(94-96)GAT>GAC	p.D32D	C9orf23_uc003zuv.2_Silent_p.D32D	NM_148179	NP_680545	Q8N5L8	CI023_HUMAN	hypothetical protein LOC138716	32							nucleic acid binding				0	all_epithelial(49;0.0863)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.0385)		TTTTGCTGCCATCTCGGACCC	0.607												
ARID3C	138715	broad.mit.edu	37	9	34622508	34622508	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:34622508T>C	uc011lon.1	-	5	884	c.884A>G	c.(883-885)AAC>AGC	p.N295S	DCTN3_uc003zuw.1_5'Flank|DCTN3_uc003zux.1_5'Flank	NM_001017363	NP_001017363	A6NKF2	ARI3C_HUMAN	AT rich interactive domain 3C (BRIGHT- like)	295	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.175)		CAGACAAGGGTTTGGAATTCC	0.572												
SIGMAR1	10280	broad.mit.edu	37	9	34635783	34635783	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:34635783T>C	uc003zvb.2	-	4	592	c.518A>G	c.(517-519)TAC>TGC	p.Y173C	SIGMAR1_uc003zva.3_Missense_Mutation_p.Y153C|SIGMAR1_uc003zuz.2_Missense_Mutation_p.Y84C|SIGMAR1_uc003zvc.2_Missense_Mutation_p.Y142C|SIGMAR1_uc003zvd.2_RNA|SIGMAR1_uc011loo.1_Intron	NM_005866	NP_005857	Q99720	SGMR1_HUMAN	sigma non-opioid intracellular receptor 1	173	Cytoplasmic (Potential).				ergosterol biosynthetic process|lipid transport	cell junction|endoplasmic reticulum membrane|growth cone|integral to plasma membrane|lipid particle|nuclear inner membrane|nuclear outer membrane	C-8 sterol isomerase activity|drug binding				0					Dextromethorphan(DB00514)	GCCCCGGCCGTACTCCACCAT	0.612												
PIGO	84720	broad.mit.edu	37	9	35091856	35091856	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:35091856C>T	uc003zwd.2	-	7	2424	c.2028G>A	c.(2026-2028)GCG>GCA	p.A676A	PIGO_uc003zwc.1_3'UTR|PIGO_uc003zwe.2_Intron|PIGO_uc003zwf.2_Intron|PIGO_uc003zwg.1_Silent_p.A239A	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	676	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			GGGCCACCAGCGCCGCCACAC	0.607												
STOML2	30968	broad.mit.edu	37	9	35100102	35100102	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:35100102C>A	uc003zwi.2	-	10	1064	c.1001G>T	c.(1000-1002)GGG>GTG	p.G334V	STOML2_uc003zwh.2_Missense_Mutation_p.G225V|STOML2_uc003zwj.2_Missense_Mutation_p.G225V|STOML2_uc011lou.1_Missense_Mutation_p.G289V|STOML2_uc003zwk.2_Missense_Mutation_p.G283V	NM_013442	NP_038470	Q9UJZ1	STML2_HUMAN	stomatin (EPB72)-like 2	334						cytoskeleton	receptor binding				0			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			TCTGCTGCTCCCACTGGAGAG	0.547												
UNC13B	10497	broad.mit.edu	37	9	35378381	35378381	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:35378381A>G	uc003zwq.2	+	16	2198	c.1906A>G	c.(1906-1908)ACC>GCC	p.T636A	UNC13B_uc003zwr.2_Missense_Mutation_p.T636A	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	636	C2 2.				excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			TAAGAAGCGTACCAAGACCAT	0.483												
UNC13B	10497	broad.mit.edu	37	9	35403993	35403993	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:35403993T>A	uc003zwq.2	+	39	5031	c.4739T>A	c.(4738-4740)CTC>CAC	p.L1580H	UNC13B_uc003zwr.2_Missense_Mutation_p.L1599H|ATP8B5P_uc010mkn.1_5'Flank|ATP8B5P_uc010mko.2_5'Flank|ATP8B5P_uc010mkp.2_5'Flank|ATP8B5P_uc003zwu.2_5'Flank	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	1580					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			TTTGTGAAACTCAAATCAGAG	0.527												
RUSC2	9853	broad.mit.edu	37	9	35547398	35547398	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:35547398A>G	uc003zww.2	+	2	1135	c.880A>G	c.(880-882)ACC>GCC	p.T294A	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Missense_Mutation_p.T294A	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	294						cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			GATGCATGGCACCCCCCGTGC	0.587												
TESK1	7016	broad.mit.edu	37	9	35609379	35609379	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:35609379C>T	uc003zxa.2	+	10	1857	c.1521C>T	c.(1519-1521)TCC>TCT	p.S507S	TESK1_uc003zwz.1_RNA|TESK1_uc010mks.2_Silent_p.S347S	NM_006285	NP_006276	Q15569	TESK1_HUMAN	testis-specific protein kinase 1	507					cell junction assembly|spermatogenesis	cytosol	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|breast(2)|lung(1)|ovary(1)|skin(1)	7			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			AACCCTGGTCCCCTAGATCAG	0.652												
TLN1	7094	broad.mit.edu	37	9	35707150	35707150	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:35707150C>T	uc003zxt.2	-	37	5228	c.4874G>A	c.(4873-4875)CGG>CAG	p.R1625Q		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	1625	Interaction with SYNM.				axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CGGGGGGTCCCGGGGATTGAC	0.602												
TMEM8B	51754	broad.mit.edu	37	9	35852855	35852855	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:35852855T>C	uc003zym.2	+	12	1866	c.851T>C	c.(850-852)GTG>GCG	p.V284A	TMEM8B_uc003zyo.2_Missense_Mutation_p.V284A	NM_001042589	NP_001036054	A6NDV4	TMM8B_HUMAN	transmembrane protein 8B isoform a	284	Extracellular (Potential).				cell-matrix adhesion|regulation of growth|regulation of mitotic cell cycle	cell surface|endoplasmic reticulum|integral to membrane|mitochondrion|nucleus|plasma membrane	protein binding			ovary(1)	1						CCAGGCATCGTGGTTTTCTGC	0.502												
MELK	9833	broad.mit.edu	37	9	36643018	36643018	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:36643018G>A	uc003zzn.2	+	11	997	c.859G>A	c.(859-861)GTA>ATA	p.V287I	MELK_uc011lpm.1_Missense_Mutation_p.V156I|MELK_uc011lpn.1_Missense_Mutation_p.V287I|MELK_uc011lpo.1_Missense_Mutation_p.V93I|MELK_uc010mll.2_Missense_Mutation_p.V255I|MELK_uc011lpp.1_Missense_Mutation_p.V239I|MELK_uc010mlm.2_Missense_Mutation_p.V216I|MELK_uc011lpq.1_Missense_Mutation_p.V93I|MELK_uc011lpr.1_Missense_Mutation_p.V216I|MELK_uc011lps.1_Missense_Mutation_p.V207I	NM_014791	NP_055606	Q14680	MELK_HUMAN	maternal embryonic leucine zipper kinase	287						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		Acute lymphoblastic leukemia(2;1.09e-08)|all_hematologic(2;8.15e-06)	STAD - Stomach adenocarcinoma(86;0.228)			TGATGATTGCGTAACAGAACT	0.259												
FBXO10	26267	broad.mit.edu	37	9	37541449	37541449	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:37541449T>C	uc004aab.2	-	2	366	c.317A>G	c.(316-318)GAA>GGA	p.E106G	FBXO10_uc004aac.2_Missense_Mutation_p.E122G|FBXO10_uc004aad.2_Intron	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	106						ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		GGTACGTCGTTCCCTCCTCCG	0.552												
FRMPD1	22844	broad.mit.edu	37	9	37745884	37745884	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:37745884T>C	uc004aag.1	+	16	3899	c.3855T>C	c.(3853-3855)TCT>TCC	p.S1285S	FRMPD1_uc004aah.1_Silent_p.S1285S	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	1285						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		GTGACAGCTCTAGCATCTGCC	0.493												
RG9MTD3	158234	broad.mit.edu	37	9	37768227	37768227	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:37768227T>C	uc004aai.2	+	5	650	c.573_splice	c.e5+2	p.L191_splice	RG9MTD3_uc011lqo.1_Intron|RG9MTD3_uc011lqp.1_Splice_Site_p.L113_splice|RG9MTD3_uc011lqq.1_Splice_Site_p.L80_splice|RG9MTD3_uc004aaj.2_Splice_Site|RG9MTD3_uc004aak.2_Splice_Site_p.L96_splice	NM_144964	NP_659401	Q6PF06	RG9D3_HUMAN	RNA (guanine-9-) methyltransferase domain								methyltransferase activity				0				GBM - Glioblastoma multiforme(29;0.00817)|Lung(182;0.226)		AGTTACCTGGTAAGTCTCTTT	0.333												
ALDH1B1	219	broad.mit.edu	37	9	38397185	38397185	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:38397185G>A	uc004aay.2	+	2	1552	c.1440G>A	c.(1438-1440)ACG>ACA	p.T480T		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	480					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	CCTGCCACACGCCATTTGGAG	0.562												
PRKACG	5568	broad.mit.edu	37	9	71628684	71628684	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:71628684A>G	uc004agy.2	-	1	356	c.325T>C	c.(325-327)TTC>CTC	p.F109L		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	109	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						TTAAAGGAGAACTGGAGCTTG	0.557												
PRKACG	5568	broad.mit.edu	37	9	71628958	71628958	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:71628958G>A	uc004agy.2	-	1	82	c.51C>T	c.(49-51)AAC>AAT	p.N17N		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	17					activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						CTAGGAACTCGTTCACGCTCT	0.448												
C9orf135	138255	broad.mit.edu	37	9	72501762	72501762	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:72501762T>A	uc004ahl.2	+	5	523	c.458T>A	c.(457-459)TTG>TAG	p.L153*	C9orf135_uc011lrw.1_Nonsense_Mutation_p.L45*|C9orf135_uc010moq.2_Nonsense_Mutation_p.L45*|C9orf135_uc011lrx.1_RNA|C9orf135_uc010mop.2_Intron	NM_001010940	NP_001010940	Q5VTT2	CI135_HUMAN	hypothetical protein LOC138255	153	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						AGGTGTGCATTGACAACGTAC	0.323												
TRPM3	80036	broad.mit.edu	37	9	73151634	73151634	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:73151634T>C	uc004aid.2	-	25	4603	c.4359A>G	c.(4357-4359)AGA>AGG	p.R1453R	TRPM3_uc004ahu.2_Silent_p.R1295R|TRPM3_uc004ahv.2_Silent_p.R1255R|TRPM3_uc004ahw.2_Silent_p.R1325R|TRPM3_uc004ahx.2_Silent_p.R1312R|TRPM3_uc004ahy.2_Silent_p.R1315R|TRPM3_uc004ahz.2_Silent_p.R1302R|TRPM3_uc004aia.2_Silent_p.R1300R|TRPM3_uc004aib.2_Silent_p.R1290R|TRPM3_uc004aic.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1478	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GGCTTGGAGGTCTGTCTGTGG	0.527												
TRPM3	80036	broad.mit.edu	37	9	73213424	73213424	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:73213424C>T	uc004aid.2	-	20	3167	c.2923G>A	c.(2923-2925)GTG>ATG	p.V975M	TRPM3_uc004ahu.2_Missense_Mutation_p.V805M|TRPM3_uc004ahv.2_Missense_Mutation_p.V777M|TRPM3_uc004ahw.2_Missense_Mutation_p.V847M|TRPM3_uc004ahx.2_Missense_Mutation_p.V834M|TRPM3_uc004ahy.2_Missense_Mutation_p.V837M|TRPM3_uc004ahz.2_Missense_Mutation_p.V824M|TRPM3_uc004aia.2_Missense_Mutation_p.V822M|TRPM3_uc004aib.2_Missense_Mutation_p.V812M|TRPM3_uc004aic.2_Missense_Mutation_p.V975M	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1000	Helical; (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						ATGATGTTCACGCAGTAGATG	0.483												
ALDH1A1	216	broad.mit.edu	37	9	75524662	75524662	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:75524662A>G	uc004ajd.2	-	11	1267	c.1214T>C	c.(1213-1215)GTG>GCG	p.V405A	ALDH1A1_uc011lsh.1_Missense_Mutation_p.V326A|ALDH1A1_uc011lsg.1_Missense_Mutation_p.V231A	NM_000689	NP_000680	P00352	AL1A1_HUMAN	aldehyde dehydrogenase 1A1	405					cellular aldehyde metabolic process|ethanol oxidation|xenobiotic metabolic process	cytosol	aldehyde dehydrogenase (NAD) activity|androgen binding|Ras GTPase activator activity|retinal dehydrogenase activity			ovary(3)|lung(1)	4					NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	GATTTGCTGCACTGGTCCAAA	0.294												
RORB	6096	broad.mit.edu	37	9	77257488	77257488	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:77257488A>G	uc004aji.2	+	4	476	c.427A>G	c.(427-429)AAC>GAC	p.N143D	RORB_uc004ajh.2_Missense_Mutation_p.N132D	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	143	Hinge (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CGGCCTGAGCAACCTGAACAA	0.468												
TRPM6	140803	broad.mit.edu	37	9	77435270	77435270	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:77435270A>G	uc004ajl.1	-	9	1322	c.1084T>C	c.(1084-1086)TCC>CCC	p.S362P	TRPM6_uc004ajk.1_Missense_Mutation_p.S357P|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.S362P|TRPM6_uc010mpd.1_Missense_Mutation_p.S362P|TRPM6_uc010mpe.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	362	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						AGGTGCTTGGACTGTTTAAGA	0.393												
OSTF1	26578	broad.mit.edu	37	9	77755814	77755814	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:77755814C>T	uc004ajv.3	+	9	763	c.552C>T	c.(550-552)GCC>GCT	p.A184A	OSTF1_uc004ajw.3_Silent_p.A141A|OSTF1_uc004ajx.3_Silent_p.A187A	NM_012383	NP_036515	Q92882	OSTF1_HUMAN	osteoclast stimulating factor 1	184					ossification|signal transduction	cytoplasm	identical protein binding			skin(1)	1						CCAATGCTGCCTGTGCATCTC	0.403												
PCSK5	5125	broad.mit.edu	37	9	78749046	78749046	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:78749046C>T	uc004ajz.2	+	10	1768	c.1230C>T	c.(1228-1230)GAC>GAT	p.D410D	PCSK5_uc004ajy.2_Silent_p.D410D|PCSK5_uc004aka.2_Intron	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	410	Catalytic.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CCTGGAGAGACGTACAGCATG	0.423												
PRUNE2	158471	broad.mit.edu	37	9	79321580	79321580	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:79321580T>C	uc010mpk.2	-	8	5734	c.5610A>G	c.(5608-5610)GTA>GTG	p.V1870V	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1870					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CCTGAACTGGTACTCCCCAGG	0.458												
FOXB2	442425	broad.mit.edu	37	9	79634951	79634951	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:79634951G>A	uc004ako.1	+	1	381	c.381G>A	c.(379-381)GCG>GCA	p.A127A		NM_001013735	NP_001013757	Q5VYV0	FOXB2_HUMAN	forkhead box B2	127					brain development|embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						CCAAGAGCGCGCCGGGCGCCG	0.433												
VPS13A	23230	broad.mit.edu	37	9	79952387	79952387	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:79952387A>G	uc004akr.2	+	47	6572	c.6312A>G	c.(6310-6312)ATA>ATG	p.I2104M	VPS13A_uc004akp.3_Missense_Mutation_p.I2104M|VPS13A_uc004akq.3_Missense_Mutation_p.I2104M|VPS13A_uc004aks.2_Missense_Mutation_p.I2065M|VPS13A_uc004akt.2_Missense_Mutation_p.I444M	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2104					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TACCATACATAATGCATTTGT	0.348												
FRMD3	257019	broad.mit.edu	37	9	85925432	85925432	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:85925432T>G	uc004ams.1	-	9	1007	c.805A>C	c.(805-807)AAG>CAG	p.K269Q	FRMD3_uc004amr.1_Missense_Mutation_p.K255Q	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	269	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						TAAAATGTCTTCCCTTCAAAC	0.398												
UBQLN1	29979	broad.mit.edu	37	9	86292640	86292640	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:86292640A>G	uc004amv.2	-	6	1679	c.1105_splice	c.e6+1	p.A369_splice	UBQLN1_uc004amw.2_Splice_Site_p.A369_splice	NM_013438	NP_038466	Q9UMX0	UBQL1_HUMAN	ubiquilin 1 isoform 1						apoptosis|regulation of protein ubiquitination|response to hypoxia	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm|proteasome complex	kinase binding				0						TTAAAAGCATACCTCCTACTC	0.433												
GKAP1	80318	broad.mit.edu	37	9	86357453	86357453	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:86357453T>C	uc004amy.2	-	11	1463	c.967A>G	c.(967-969)ACT>GCT	p.T323A	GKAP1_uc004amz.2_Missense_Mutation_p.T272A	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	323	Potential.				signal transduction	Golgi apparatus					0						ACCTGAATAGTGAGCTCATTC	0.348												
AGTPBP1	23287	broad.mit.edu	37	9	88236136	88236136	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:88236136A>G	uc011ltd.1	-	14	2113	c.2080T>C	c.(2080-2082)TAT>CAT	p.Y694H	AGTPBP1_uc004aod.3_Missense_Mutation_p.Y320H|AGTPBP1_uc011ltc.1_Missense_Mutation_p.Y592H|AGTPBP1_uc010mqc.2_Missense_Mutation_p.Y654H|AGTPBP1_uc011lte.1_Missense_Mutation_p.Y706H	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	694					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						TCCAAGTCATATACCACACGA	0.239												
IARS	3376	broad.mit.edu	37	9	95050089	95050089	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:95050089T>A	uc004art.1	-	4	637	c.380A>T	c.(379-381)TAT>TTT	p.Y127F	IARS_uc004ars.1_5'UTR|IARS_uc004aru.3_Missense_Mutation_p.Y127F|IARS_uc010mqr.2_Missense_Mutation_p.Y17F|IARS_uc010mqt.2_Intron	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	127					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	CTCAGCAGAATATCTCATCAC	0.398												
OGN	4969	broad.mit.edu	37	9	95165630	95165630	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:95165630T>C	uc004asa.2	-	2	295	c.60A>G	c.(58-60)GCA>GCG	p.A20A	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|OGN_uc004asb.2_Silent_p.A20A|OGN_uc011ltx.1_Silent_p.A38A	NM_014057	NP_054776	P20774	MIME_HUMAN	osteoglycin preproprotein	20						extracellular space|proteinaceous extracellular matrix	growth factor activity				0						GGGTTGGTGGTGCTGGCTTTA	0.393												
IPPK	64768	broad.mit.edu	37	9	95378327	95378327	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:95378327C>T	uc004asl.1	-	13	1540	c.1263G>A	c.(1261-1263)AGG>AGA	p.R421R	IPPK_uc004ask.1_Silent_p.R120R|uc004asm.2_5'Flank	NM_022755	NP_073592	Q9H8X2	IPPK_HUMAN	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	421					inositol or phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol pentakisphosphate 2-kinase activity			ovary(2)	2						GGACGACAGGCCTTTGATCAG	0.498												
IPPK	64768	broad.mit.edu	37	9	95432206	95432206	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:95432206A>G	uc004asl.1	-	1	342	c.65T>C	c.(64-66)GTG>GCG	p.V22A		NM_022755	NP_073592	Q9H8X2	IPPK_HUMAN	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	22					inositol or phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol pentakisphosphate 2-kinase activity			ovary(2)	2						GTGGGCCACCACCAGGCTCTT	0.657												
WNK2	65268	broad.mit.edu	37	9	95947742	95947742	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:95947742G>C	uc004ati.1	+	1	531	c.531G>C	c.(529-531)GAG>GAC	p.E177D	WNK2_uc011lud.1_Missense_Mutation_p.E177D|WNK2_uc004atj.2_Missense_Mutation_p.E177D|WNK2_uc010mrc.1_Missense_Mutation_p.E177D	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	177					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						AAGAGGAGGAGGACGACGAGG	0.692												
WNK2	65268	broad.mit.edu	37	9	95947835	95947835	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:95947835G>A	uc004ati.1	+	1	624	c.624G>A	c.(622-624)ACG>ACA	p.T208T	WNK2_uc011lud.1_Silent_p.T208T|WNK2_uc004atj.2_Silent_p.T208T|WNK2_uc010mrc.1_Silent_p.T208T	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	208	ATP (By similarity).|Protein kinase.				intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						CCTTCAAGACGGTCTACAAGG	0.662												
FAM120A	23196	broad.mit.edu	37	9	96323469	96323469	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:96323469G>A	uc004atw.2	+	16	2910	c.2885G>A	c.(2884-2886)CGG>CAG	p.R962Q	FAM120A_uc004aty.2_Missense_Mutation_p.R743Q|FAM120A_uc004atz.2_Missense_Mutation_p.R610Q|FAM120A_uc010mrg.2_Missense_Mutation_p.R229Q|FAM120A_uc004aua.1_5'Flank	NM_014612	NP_055427	Q9NZB2	F120A_HUMAN	oxidative stress-associated Src activator	962	RNA binding.					cytoplasm|plasma membrane	RNA binding				0						GGGAGCAGGCGGGGCCGTGGG	0.527												
PTPDC1	138639	broad.mit.edu	37	9	96847621	96847621	+	Silent	SNP	G	G	A	rs149606330	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:96847621G>A	uc004auf.1	+	3	511	c.171G>A	c.(169-171)GCG>GCA	p.A57A	PTPDC1_uc004aug.1_Silent_p.A57A|PTPDC1_uc004auh.1_Silent_p.A109A|PTPDC1_uc010mrj.1_Silent_p.A111A|PTPDC1_uc010mri.1_Silent_p.A109A	NM_177995	NP_818931	A2A3K4	PTPC1_HUMAN	protein tyrosine phosphatase domain containing 1	57							protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1						GTTCCATGGCGTGTGGCGGTA	0.498												
FANCC	2176	broad.mit.edu	37	9	97887409	97887409	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:97887409T>C	uc004avh.2	-	10	1217	c.955A>G	c.(955-957)ACG>GCG	p.T319A	FANCC_uc004avi.3_Missense_Mutation_p.T319A|uc004avj.2_5'Flank	NM_000136	NP_000127	Q00597	FANCC_HUMAN	Fanconi anemia, complementation group C	319					protein complex assembly	cytosol|nucleoplasm	protein binding			kidney(1)	1		Acute lymphoblastic leukemia(62;0.138)				AAGCACTGCGTAAACACCTGA	0.428			D|Mis|N|F|S			AML|leukemia		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia			
PTCH1	5727	broad.mit.edu	37	9	98231280	98231280	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:98231280T>C	uc004avk.3	-	14	2191	c.2003A>G	c.(2002-2004)TAC>TGC	p.Y668C	PTCH1_uc010mro.2_Missense_Mutation_p.Y517C|PTCH1_uc010mrp.2_Missense_Mutation_p.Y517C|PTCH1_uc010mrq.2_Missense_Mutation_p.Y517C|PTCH1_uc004avl.3_Missense_Mutation_p.Y517C|PTCH1_uc010mrr.2_Missense_Mutation_p.Y602C|PTCH1_uc004avm.3_Missense_Mutation_p.Y667C|PTCH1_uc010mrs.1_Missense_Mutation_p.Y336C	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	668	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity	p.Y668Y(1)		skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				GTGGGGGTCGTACTCCGTGCG	0.622									Basal_Cell_Nevus_syndrome			
C9orf102	375748	broad.mit.edu	37	9	98683534	98683534	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:98683534A>G	uc004avt.3	+	7	1657	c.1269A>G	c.(1267-1269)ATA>ATG	p.I423M	C9orf102_uc010mrx.1_RNA|C9orf102_uc011lum.1_Missense_Mutation_p.I125M|C9orf102_uc010mry.1_Missense_Mutation_p.I125M|C9orf102_uc010mrz.2_Missense_Mutation_p.I234M|C9orf102_uc004avu.2_5'Flank	NM_001010895	NP_001010895	Q5T890	RAD26_HUMAN	RAD26L hypothetical protein	423					DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				TGACTTTGATACTTCAATCTT	0.358												
C9orf102	375748	broad.mit.edu	37	9	98740497	98740497	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:98740497G>T	uc004avu.2	+	12	2610	c.1365G>T	c.(1363-1365)AAG>AAT	p.K455N	uc010msa.1_Missense_Mutation_p.K145N|uc011lun.1_Missense_Mutation_p.K145N			Q5T890	RAD26_HUMAN	Homo sapiens cDNA, FLJ97452.	Error:Variant_position_missing_in_Q5T890_after_alignment					DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				GCAGTTCTAAGGTAAGAAAAA	0.393												
KIAA1529	57653	broad.mit.edu	37	9	100120005	100120005	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:100120005A>G	uc011lut.1	+	37	4683	c.3910A>G	c.(3910-3912)ACC>GCC	p.T1304A	KIAA1529_uc004axe.1_Missense_Mutation_p.T1136A|KIAA1529_uc004axg.1_Missense_Mutation_p.T1165A|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_Missense_Mutation_p.T321A	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				GGGAGAGAAAACCGTAAGTGT	0.343												
TBC1D2	55357	broad.mit.edu	37	9	100983263	100983263	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:100983263T>C	uc011lvb.1	-	6	1406	c.1226A>G	c.(1225-1227)GAC>GGC	p.D409G	TBC1D2_uc004ayq.2_Missense_Mutation_p.D409G|TBC1D2_uc004ayr.2_Missense_Mutation_p.D191G|TBC1D2_uc004ayo.3_Missense_Mutation_p.D409G	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	409	Potential.|Interaction with RAC1.					cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		GTGGTTCTTGTCCATAAGCAG	0.642												
COL15A1	1306	broad.mit.edu	37	9	101748054	101748054	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:101748054G>A	uc004azb.1	+	3	514	c.308G>A	c.(307-309)CGT>CAT	p.R103H	COL15A1_uc004aza.2_Missense_Mutation_p.R103H	NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	103	TSP N-terminal.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				AGCAGCACCCGTGGTGGCGTG	0.637												
INVS	27130	broad.mit.edu	37	9	103035332	103035332	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:103035332A>G	uc004bap.1	+	12	1970	c.1758A>G	c.(1756-1758)GAA>GAG	p.E586E	INVS_uc010mta.1_Silent_p.E490E|INVS_uc011lve.1_Silent_p.E490E|INVS_uc004bao.1_Silent_p.E586E|INVS_uc004baq.1_Silent_p.E490E|INVS_uc004bar.1_Silent_p.E490E|INVS_uc010mtb.1_Silent_p.E260E	NM_014425	NP_055240	Q9Y283	INVS_HUMAN	inversin isoform a	586					negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|membrane|microtubule|nucleus|spindle	calmodulin binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.056)				TGAAGCATGAACAGTTGAGAA	0.502												
C9orf30	91283	broad.mit.edu	37	9	103213194	103213194	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:103213194T>C	uc004baw.2	+	3	841	c.774T>C	c.(772-774)TTT>TTC	p.F258F	TMEFF1_uc004bay.1_Intron|C9orf30_uc004bax.2_RNA	NM_080655	NP_542386	Q96H12	CI030_HUMAN	hypothetical protein LOC91283	258										ovary(1)	1		Acute lymphoblastic leukemia(62;0.0527)				TACAAACTTTTACCAAGGAAT	0.418												
ABCA1	19	broad.mit.edu	37	9	107594877	107594877	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:107594877C>T	uc004bcl.2	-	12	1800	c.1487G>A	c.(1486-1488)CGG>CAG	p.R496Q		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	496	Extracellular.		R -> W (associated with increased plasma HDL cholesterol).		Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AGATATGGTCCGGATTGCCTG	0.478												
SLC44A1	23446	broad.mit.edu	37	9	108118594	108118594	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:108118594T>C	uc004bcn.2	+	6	823	c.602T>C	c.(601-603)TTA>TCA	p.L201S	SLC44A1_uc010mtk.1_Missense_Mutation_p.L201S|SLC44A1_uc004bco.1_5'UTR	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	201	Mitochondrial intermembrane (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	AATAGTGTCTTACACAGGCTG	0.408												
SLC44A1	23446	broad.mit.edu	37	9	108118607	108118607	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:108118607T>C	uc004bcn.2	+	6	836	c.615T>C	c.(613-615)ATT>ATC	p.I205I	SLC44A1_uc010mtk.1_Silent_p.I205I|SLC44A1_uc004bco.1_5'UTR	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	205	Mitochondrial intermembrane (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	ACAGGCTGATTAGTGGAGTAA	0.403												
TMEM38B	55151	broad.mit.edu	37	9	108536265	108536265	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:108536265A>G	uc004bcu.1	+	6	897	c.780A>G	c.(778-780)GCA>GCG	p.A260A	TMEM38B_uc010mtn.1_3'UTR	NM_018112	NP_060582	Q9NVV0	TM38B_HUMAN	transmembrane protein 38B	260	Cytoplasmic (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			ovary(1)|skin(1)	2						AAAGTGAAGCAAAGTCACCTT	0.398												
ZNF462	58499	broad.mit.edu	37	9	109734375	109734375	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:109734375C>T	uc004bcz.2	+	8	6806	c.6517C>T	c.(6517-6519)CCT>TCT	p.P2173S	ZNF462_uc010mto.2_Missense_Mutation_p.P2082S|ZNF462_uc004bda.2_Missense_Mutation_p.P2081S|ZNF462_uc011lvz.1_Missense_Mutation_p.P130S|ZNF462_uc004bdb.1_Missense_Mutation_p.P81S	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	2173					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						CCGTGTTAGCCCTGTGCCTCT	0.527												
KLF4	9314	broad.mit.edu	37	9	110250404	110250404	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:110250404G>A	uc004bdh.2	-	3	865	c.244C>T	c.(244-246)CTA>TTA	p.L82L	KLF4_uc004bdf.1_Silent_p.L41L|KLF4_uc004bdg.2_Silent_p.L91L	NM_004235	NP_004226	O43474	KLF4_HUMAN	Kruppel-like factor 4 (gut)	91					fat cell differentiation|mesodermal cell fate determination|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|stem cell maintenance|transcription from RNA polymerase II promoter	nucleus	RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor recruiting transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(2)|lung(1)	3						CTCCGAGGTAGGGGCGCCAGG	0.667												
ACTL7A	10881	broad.mit.edu	37	9	111625200	111625200	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:111625200T>C	uc004bdj.1	+	1	598	c.598T>C	c.(598-600)TAC>CAC	p.Y200H		NM_006687	NP_006678	Q9Y615	ACL7A_HUMAN	actin-like 7A	200						cytoplasm|cytoskeleton|protein complex	structural constituent of cytoskeleton				0						GCACATCGCCTACCAGTCGCG	0.567												
ACTL7A	10881	broad.mit.edu	37	9	111625720	111625720	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:111625720G>A	uc004bdj.1	+	1	1118	c.1118G>A	c.(1117-1119)CGT>CAT	p.R373H		NM_006687	NP_006678	Q9Y615	ACL7A_HUMAN	actin-like 7A	373						cytoplasm|cytoskeleton|protein complex	structural constituent of cytoskeleton				0						TTCCCTAACCGTCTGCAGAAG	0.587												
IKBKAP	8518	broad.mit.edu	37	9	111663739	111663739	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:111663739G>A	uc004bdm.3	-	18	2500	c.1980C>T	c.(1978-1980)TGC>TGT	p.C660C	IKBKAP_uc004bdl.2_Silent_p.C311C|IKBKAP_uc011lwc.1_Silent_p.C546C|IKBKAP_uc010mtq.2_Silent_p.C311C	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene	660					immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						AAAAACACTGGCAGGTATGGG	0.403												
IKBKAP	8518	broad.mit.edu	37	9	111681604	111681604	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:111681604T>C	uc004bdm.3	-	7	1098	c.578A>G	c.(577-579)GAC>GGC	p.D193G	IKBKAP_uc004bdl.2_5'Flank|IKBKAP_uc011lwc.1_Missense_Mutation_p.D79G|IKBKAP_uc010mtq.2_Intron	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene	193					immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						TGGTCTATGGTCATCCCAGGG	0.448												
EPB41L4B	54566	broad.mit.edu	37	9	112029799	112029799	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:112029799T>C	uc004bdz.1	-	4	782	c.487A>G	c.(487-489)AAA>GAA	p.K163E	EPB41L4B_uc004bea.2_Missense_Mutation_p.K163E	NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	163	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						GAATAGTATTTAACTCGAAAG	0.443												
PTPN3	5774	broad.mit.edu	37	9	112166752	112166752	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:112166752G>A	uc004bed.2	-	19	2041	c.1929C>T	c.(1927-1929)AGC>AGT	p.S643S	PTPN3_uc004beb.2_Silent_p.S512S|PTPN3_uc004bec.2_Silent_p.S467S|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Silent_p.S598S|PTPN3_uc011lwh.1_Silent_p.S489S|PTPN3_uc011lwd.1_Silent_p.S111S|PTPN3_uc011lwe.1_Silent_p.S356S|PTPN3_uc011lwf.1_Silent_p.S311S	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	643					negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						GCACCGTCCCGCTTTCGAGGC	0.502												
SVEP1	79987	broad.mit.edu	37	9	113166770	113166770	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:113166770C>T	uc010mtz.2	-	39	9840	c.9503G>A	c.(9502-9504)CGC>CAC	p.R3168H	SVEP1_uc010mty.2_Missense_Mutation_p.R1094H	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	3168	Sushi 29.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AGGGAACCAGCGACCATCTTT	0.418												
MUSK	4593	broad.mit.edu	37	9	113530124	113530124	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:113530124C>T	uc004bey.2	+	8	1043	c.945C>T	c.(943-945)GGC>GGT	p.G315G		NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	315	FZ.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						ATAACAAAGGCTACTGCGCCC	0.423												
MUSK	4593	broad.mit.edu	37	9	113547866	113547866	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:113547866A>G	uc004bey.2	+	12	1744	c.1646A>G	c.(1645-1647)CAT>CGT	p.H549R	MUSK_uc004bez.1_Missense_Mutation_p.H129R	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	549	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						GATAGACTTCATCCCAACCCC	0.493												
KIAA0368	23392	broad.mit.edu	37	9	114184265	114184265	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:114184265T>C	uc004bfe.1	-	16	1925	c.1925A>G	c.(1924-1926)TAT>TGT	p.Y642C	KIAA0368_uc010muc.1_Missense_Mutation_p.Y464C	NM_001080398	NP_001073867			KIAA0368 protein												0						CAAAGTACTATACGCTCCAAC	0.443												
C9orf84	158401	broad.mit.edu	37	9	114490230	114490230	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:114490230G>A	uc004bfr.2	-	11	1460	c.1325C>T	c.(1324-1326)GCA>GTA	p.A442V	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Missense_Mutation_p.A403V|C9orf84_uc010mug.2_Missense_Mutation_p.A388V	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	442										ovary(2)	2						TACTTCTTTTGCCAGAGATGG	0.348												
SUSD1	64420	broad.mit.edu	37	9	114911561	114911561	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:114911561G>C	uc004bfu.2	-	3	377	c.336C>G	c.(334-336)AAC>AAG	p.N112K	SUSD1_uc010mui.2_Missense_Mutation_p.N112K|SUSD1_uc010muj.2_Missense_Mutation_p.N112K	NM_022486	NP_071931	Q6UWL2	SUSD1_HUMAN	sushi domain containing 1 precursor	112	EGF-like 2; calcium-binding (Potential).|Extracellular (Potential).					integral to membrane	calcium ion binding				0						TGAATGTCTTGTTGTTGTTTG	0.418												
ROD1	9991	broad.mit.edu	37	9	114997101	114997101	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:114997101T>C	uc004bfw.2	-	9	1150	c.963A>G	c.(961-963)ACA>ACG	p.T321T	ROD1_uc004bfv.2_Silent_p.T327T|ROD1_uc004bfx.2_Silent_p.T324T|ROD1_uc011lwu.1_Silent_p.T293T|ROD1_uc004bfy.2_Silent_p.T226T|ROD1_uc004bfz.2_Silent_p.T293T	NM_005156	NP_005147	O95758	ROD1_HUMAN	ROD1 regulator of differentiation 1 isoform 1	321					anatomical structure morphogenesis|mRNA processing	nucleus	nucleotide binding|RNA binding			skin(1)	1						AAGAATCACCTGTAGCTTGAG	0.368												
BSPRY	54836	broad.mit.edu	37	9	116130558	116130558	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:116130558A>G	uc004bhg.3	+	5	625	c.577A>G	c.(577-579)ATT>GTT	p.I193V	BSPRY_uc010muw.2_Intron	NM_017688	NP_060158	Q5W0U4	BSPRY_HUMAN	B-box and SPRY domain containing	193					calcium ion transport	cytoplasm|membrane	zinc ion binding			breast(1)	1						AGCAGAGGGCATTTTGGATCC	0.473												
HDHD3	81932	broad.mit.edu	37	9	116136524	116136524	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:116136524C>T	uc004bhi.1	-	2	895	c.111G>A	c.(109-111)GGG>GGA	p.G37G	HDHD3_uc004bhj.2_Silent_p.G37G|HDHD3_uc004bhk.2_Silent_p.G37G	NM_031219	NP_112496	Q9BSH5	HDHD3_HUMAN	haloacid dehalogenase-like hydrolase domain	37							phosphoglycolate phosphatase activity|protein binding				0						CCACCTCCAGCCCATGGGCCC	0.647												
DFNB31	25861	broad.mit.edu	37	9	117186646	117186646	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:117186646C>T	uc004biz.3	-	6	2033	c.1384G>A	c.(1384-1386)GCC>ACC	p.A462T	DFNB31_uc004bix.2_Missense_Mutation_p.A111T|DFNB31_uc004biy.3_Missense_Mutation_p.A79T|DFNB31_uc004bja.3_Missense_Mutation_p.A462T	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	462					inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TTGAACAGGGCCATGACGAGG	0.642												
DFNB31	25861	broad.mit.edu	37	9	117266884	117266884	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:117266884G>A	uc004biz.3	-	1	847	c.198C>T	c.(196-198)CAC>CAT	p.H66H	DFNB31_uc004biy.3_5'Flank|DFNB31_uc004bja.3_Silent_p.H66H|DFNB31_uc004bjb.2_Silent_p.H66H	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	66					inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TGCGGCGCGCGTGGTAAGCGT	0.677												
TNC	3371	broad.mit.edu	37	9	117804499	117804499	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:117804499T>C	uc004bjj.3	-	18	5609	c.5247A>G	c.(5245-5247)GGA>GGG	p.G1749G	TNC_uc010mvf.2_Silent_p.G1476G	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1749	Fibronectin type-III 13.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GTCTCCTACCTCCTGTAATGG	0.478												
TNC	3371	broad.mit.edu	37	9	117826299	117826299	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:117826299T>C	uc004bjj.3	-	12	3898	c.3536A>G	c.(3535-3537)GAT>GGT	p.D1179G	TNC_uc010mvf.2_Missense_Mutation_p.D1179G	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1179	Fibronectin type-III 7.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						TTTGAGGGCATCCCAGCCCAC	0.522												
TNC	3371	broad.mit.edu	37	9	117853152	117853152	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:117853152A>G	uc004bjj.3	-	2	508	c.146T>C	c.(145-147)GTG>GCG	p.V49A	TNC_uc010mvf.2_Missense_Mutation_p.V49A	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	49					cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GTGGTTAAACACCACTGGCTG	0.577												
PAPPA	5069	broad.mit.edu	37	9	118950133	118950133	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:118950133C>T	uc004bjn.2	+	2	1497	c.1116C>T	c.(1114-1116)CGC>CGT	p.R372R	PAPPA_uc011lxp.1_Silent_p.R165R|PAPPA_uc011lxq.1_Silent_p.R165R	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	372	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CGGTGACGCGCGAGCAGGTGG	0.572												
PAPPA	5069	broad.mit.edu	37	9	118974132	118974132	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:118974132T>C	uc004bjn.2	+	4	2220	c.1839T>C	c.(1837-1839)GGT>GGC	p.G613G	PAPPA_uc011lxp.1_Intron|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	613					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						AGTCCTGTGGTGACCCAGGGC	0.532												
ASTN2	23245	broad.mit.edu	37	9	119204810	119204810	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:119204810T>C	uc004bjs.1	-	21	3621	c.3520A>G	c.(3520-3522)ACA>GCA	p.T1174A	ASTN2_uc004bjr.1_Missense_Mutation_p.T1170A|ASTN2_uc004bjt.1_Missense_Mutation_p.T1123A|ASTN2_uc004bjp.1_Missense_Mutation_p.T267A|ASTN2_uc004bjq.1_Missense_Mutation_p.T226A|ASTN2_uc011lxr.1_Missense_Mutation_p.T226A|ASTN2_uc011lxs.1_Missense_Mutation_p.T226A|ASTN2_uc011lxt.1_Missense_Mutation_p.T226A|ASTN2_uc004bjo.1_Translation_Start_Site	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	1174	Extracellular (Potential).|Fibronectin type-III.					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CTCCCTCGTGTATCCACAGCA	0.537												
DBC1	1620	broad.mit.edu	37	9	122011371	122011371	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:122011371G>A	uc004bkc.2	-	3	732	c.276C>T	c.(274-276)CGC>CGT	p.R92R	DBC1_uc004bkd.2_Silent_p.R92R	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	92	MACPF.				cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCACTGGATGGCGGACCAGAT	0.532												
C5	727	broad.mit.edu	37	9	123737152	123737152	+	Missense_Mutation	SNP	G	G	A	rs141543606	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:123737152G>A	uc004bkv.2	-	30	3952	c.3922C>T	c.(3922-3924)CGC>TGC	p.R1308C		NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	1308					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	ATACTCAAGCGGAGTTGTTTA	0.393												
DAB2IP	153090	broad.mit.edu	37	9	124543794	124543794	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:124543794G>A	uc004bln.2	+	15	3351	c.3282G>A	c.(3280-3282)GCG>GCA	p.A1094A	DAB2IP_uc004blo.2_Silent_p.A998A|DAB2IP_uc004blp.2_Silent_p.A527A	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	1122	Potential.				activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						AGATGCAAGCGGCTGTGGACT	0.567												
TTLL11	158135	broad.mit.edu	37	9	124751996	124751996	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:124751996T>C	uc004blt.1	-	4	1205	c.1017A>G	c.(1015-1017)AAA>AAG	p.K339K	TTLL11_uc011lyl.1_Silent_p.K339K|TTLL11_uc004blr.2_RNA|TTLL11_uc011lym.1_Silent_p.K16K|TTLL11_uc004blu.1_3'UTR	NM_194252	NP_919228	Q8NHH1	TTL11_HUMAN	tubulin tyrosine ligase-like family, member 11	339	TTL.				protein modification process	cilium|microtubule basal body	tubulin-tyrosine ligase activity				0						CACCATCAGGTTTCACGATAA	0.468												
TTLL11	158135	broad.mit.edu	37	9	124801573	124801573	+	Silent	SNP	G	G	A	rs116781476	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:124801573G>A	uc004blt.1	-	2	995	c.807C>T	c.(805-807)TCC>TCT	p.S269S	TTLL11_uc011lyl.1_Silent_p.S269S|TTLL11_uc004blr.2_RNA|TTLL11_uc011lym.1_5'UTR|TTLL11_uc004blu.1_Silent_p.S269S	NM_194252	NP_919228	Q8NHH1	TTL11_HUMAN	tubulin tyrosine ligase-like family, member 11	269	TTL.				protein modification process	cilium|microtubule basal body	tubulin-tyrosine ligase activity				0						TCACTTGACCGGAGAATATGT	0.418												
NDUFA8	4702	broad.mit.edu	37	9	124914655	124914655	+	Silent	SNP	C	C	T	rs117079538	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:124914655C>T	uc004blv.2	-	2	226	c.84G>A	c.(82-84)GCG>GCA	p.A28A		NM_014222	NP_055037	P51970	NDUA8_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	28					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial intermembrane space|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			breast(1)	1					NADH(DB00157)	AGTGATGGGCCGCAGCTTTAA	0.478												
MRRF	92399	broad.mit.edu	37	9	125033202	125033202	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:125033202T>C	uc004bmb.2	+	2	147	c.32T>C	c.(31-33)GTC>GCC	p.V11A	MRRF_uc004bmc.2_Missense_Mutation_p.V11A|MRRF_uc011lyq.1_Missense_Mutation_p.V32A|MRRF_uc010mvz.1_RNA|MRRF_uc010mwa.2_Missense_Mutation_p.V11A|MRRF_uc011lyr.1_Missense_Mutation_p.V11A|MRRF_uc004bmd.2_Missense_Mutation_p.V11A|MRRF_uc004bme.2_RNA	NM_138777	NP_620132	Q96E11	RRFM_HUMAN	mitochondrial ribosome recycling factor isoform	11					ribosome disassembly|translation	mitochondrion	sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						TTCCGCATGGTCCACCCTACC	0.423												
ZBTB6	10773	broad.mit.edu	37	9	125673881	125673881	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:125673881A>G	uc004bnh.2	-	2	560	c.471T>C	c.(469-471)TCT>TCC	p.S157S		NM_006626	NP_006617	Q15916	ZBTB6_HUMAN	zinc finger and BTB domain containing 6	157					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGTCTTTATCAGAATTTTCAT	0.343												
CRB2	286204	broad.mit.edu	37	9	126133465	126133465	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:126133465G>A	uc004bnx.1	+	8	2136	c.2044G>A	c.(2044-2046)GCT>ACT	p.A682T	CRB2_uc004bnw.1_Missense_Mutation_p.A682T	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	682	Extracellular (Potential).|Laminin G-like 2.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						TCGGGAGTCCGCTGGCCTGTT	0.612												
DENND1A	57706	broad.mit.edu	37	9	126212994	126212994	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:126212994A>C	uc004bnz.1	-	18	1567	c.1334T>G	c.(1333-1335)GTG>GGG	p.V445G	DENND1A_uc011lzl.1_Missense_Mutation_p.V220G|DENND1A_uc004bny.1_Missense_Mutation_p.V184G|DENND1A_uc011lzm.1_Missense_Mutation_p.V413G|DENND1A_uc004boa.1_Missense_Mutation_p.V445G|DENND1A_uc004bob.1_Missense_Mutation_p.V415G|DENND1A_uc004boc.2_Missense_Mutation_p.V413G	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	445						cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						GCGGTTTTTCACCTCTTTTAT	0.353												
NR5A1	2516	broad.mit.edu	37	9	127245230	127245230	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:127245230T>C	uc004boo.1	-	7	1380	c.1193A>G	c.(1192-1194)AAC>AGC	p.N398S		NM_004959	NP_004950	Q13285	STF1_HUMAN	nuclear receptor subfamily 5, group A, member 1	398	Important for dimerization.				cell-cell signaling|male gonad development|positive regulation of transcription from RNA polymerase II promoter|primary sex determination|regulation of steroid biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|phospholipid binding|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						CAGGGCGGCGTTGGCCTTCTC	0.592												
OLFML2A	169611	broad.mit.edu	37	9	127549284	127549284	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:127549284A>G	uc004bov.2	+	2	234	c.121A>G	c.(121-123)ACC>GCC	p.T41A	OLFML2A_uc010mwr.1_Missense_Mutation_p.T41A	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	41											0						GGTGAGGATGACCTCGGAGGG	0.647												
OLFML2A	169611	broad.mit.edu	37	9	127549392	127549392	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:127549392G>T	uc004bov.2	+	2	342	c.229G>T	c.(229-231)GTG>TTG	p.V77L	OLFML2A_uc010mwr.1_Missense_Mutation_p.V77L	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	77											0						CTTCTACACGGTGGAGACTGT	0.627												
ANGPTL2	23452	broad.mit.edu	37	9	129870558	129870558	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:129870558G>A	uc004bqr.1	-	2	953	c.453C>T	c.(451-453)AAC>AAT	p.N151N	RALGPS1_uc004bqo.1_Intron|RALGPS1_uc011mab.1_Intron|RALGPS1_uc011mac.1_Intron|RALGPS1_uc004bqq.3_Intron|ANGPTL2_uc010mxg.1_Intron	NM_012098	NP_036230	Q9UKU9	ANGL2_HUMAN	angiopoietin-like 2 precursor	151					multicellular organismal development|signal transduction	extracellular space	receptor binding				0						GCTCCAACGCGTTGTCCCGCT	0.602												
ZNF79	7633	broad.mit.edu	37	9	130207103	130207103	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:130207103A>G	uc004bqw.3	+	5	1538	c.1124A>G	c.(1123-1125)AAC>AGC	p.N375S	ZNF79_uc011maf.1_Missense_Mutation_p.N351S|ZNF79_uc011mag.1_Missense_Mutation_p.N351S	NM_007135	NP_009066	Q15937	ZNF79_HUMAN	zinc finger protein 79	375	C2H2-type 7.			Missing (in Ref. 4; CAA46339).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						CAGAGTGCAAACCTCACAAAC	0.542												
STXBP1	6812	broad.mit.edu	37	9	130416038	130416038	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:130416038C>T	uc004brl.2	+	3	329	c.132C>T	c.(130-132)TGC>TGT	p.C44C	STXBP1_uc004brk.2_Silent_p.C44C	NM_001032221	NP_001027392	P61764	STXB1_HUMAN	syntaxin binding protein 1 isoform b	44					axon target recognition|energy reserve metabolic process|glutamate secretion|negative regulation of synaptic transmission, GABAergic|neurotransmitter secretion|platelet aggregation|platelet degranulation|protein transport|regulation of insulin secretion|regulation of synaptic vesicle priming|synaptic vesicle maturation|vesicle docking involved in exocytosis	cytosol|mitochondrion|plasma membrane|platelet alpha granule|protein complex	identical protein binding|syntaxin-1 binding|syntaxin-2 binding			skin(1)	1						TGTCCTCCTGCTGCAAGATGA	0.448												
PTRH1	138428	broad.mit.edu	37	9	130476402	130476402	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:130476402G>T	uc004bro.2	-	5	640	c.622C>A	c.(622-624)CAG>AAG	p.Q208K	PTRH1_uc004brm.2_Intron|PTRH1_uc010mxm.2_3'UTR|PTRH1_uc011mah.1_Missense_Mutation_p.Q221K|TTC16_uc004brq.1_5'Flank|TTC16_uc011mai.1_5'Flank|TTC16_uc004brr.1_5'Flank	NM_001002913	NP_001002913	Q86Y79	PTH_HUMAN	peptidyl-tRNA hydrolase 1 homolog	208					translation		aminoacyl-tRNA hydrolase activity|protein binding				0						GAGGGCCCCTGGCTTCGCTCA	0.647												
PIP5KL1	138429	broad.mit.edu	37	9	130687442	130687442	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:130687442T>C	uc011mao.1	-	9	906	c.861A>G	c.(859-861)CAA>CAG	p.Q287Q	PIP5KL1_uc004bsu.2_Silent_p.Q84Q	NM_001135219	NP_001128691	Q5T9C9	PI5L1_HUMAN	phosphatidylinositol-4-phosphate 5-kinase-like 1	287	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			lung(1)|kidney(1)	2						CGTGGAGACGTTGGAAGGCTA	0.632												
SLC25A25	114789	broad.mit.edu	37	9	130868031	130868031	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:130868031C>T	uc004bte.2	+	6	698	c.669C>T	c.(667-669)AAC>AAT	p.N223N	SLC25A25_uc004btb.2_Silent_p.N257N|SLC25A25_uc004btc.2_Silent_p.N243N|SLC25A25_uc004btd.2_Silent_p.N255N|SLC25A25_uc004btf.2_Silent_p.N120N	NM_052901	NP_443133	Q6KCM7	SCMC2_HUMAN	solute carrier family 25, member 25 isoform a	223	Solcar 1.|Mitochondrial matrix (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding				0						GCAGCAACAACATGGGCATCG	0.627												
CIZ1	25792	broad.mit.edu	37	9	130941627	130941627	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:130941627T>A	uc004btt.2	-	8	1022	c.859A>T	c.(859-861)ATG>TTG	p.M287L	CIZ1_uc004btr.2_Missense_Mutation_p.M287L|CIZ1_uc004bts.2_Missense_Mutation_p.M258L|CIZ1_uc011maq.1_Missense_Mutation_p.M282L|CIZ1_uc004btu.2_Missense_Mutation_p.M263L|CIZ1_uc011mar.1_Missense_Mutation_p.M186L|CIZ1_uc011mas.1_Missense_Mutation_p.M317L|CIZ1_uc004btw.2_Missense_Mutation_p.M287L|CIZ1_uc004btv.2_Missense_Mutation_p.M287L|CIZ1_uc004btx.2_Missense_Mutation_p.M263L	NM_001131016	NP_001124488	Q9ULV3	CIZ1_HUMAN	CDKN1A interacting zinc finger protein 1 isoform	287	Gln-rich.					nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4						GGTACTGTCATCCGGGCCTGC	0.582												
GOLGA2	2801	broad.mit.edu	37	9	131021357	131021357	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:131021357C>T	uc011maw.1	-	20	2034	c.2021G>A	c.(2020-2022)CGC>CAC	p.R674H	GOLGA2_uc010mxw.2_Intron|GOLGA2_uc004buh.2_Missense_Mutation_p.R147H	NM_004486	NP_004477	Q08379	GOGA2_HUMAN	Golgi autoantigen, golgin subfamily a, 2	674	Potential.					Golgi cisterna membrane	protein binding			ovary(1)	1						AGCTTCCAGGCGCTCCTAAGG	0.622												
COQ4	51117	broad.mit.edu	37	9	131087459	131087459	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:131087459C>T	uc004bur.3	+	3	587	c.240C>T	c.(238-240)CGC>CGT	p.R80R	TRUB2_uc004buq.1_5'Flank|COQ4_uc011max.1_Silent_p.R80R|COQ4_uc004bus.2_Silent_p.R56R|COQ4_uc010mxy.2_Silent_p.R56R	NM_016035	NP_057119	Q9Y3A0	COQ4_HUMAN	coenzyme Q4 homolog precursor	80					ubiquinone biosynthetic process	mitochondrial inner membrane					0						CAGGACACCGCACCCTGAAGG	0.507												
PKN3	29941	broad.mit.edu	37	9	131469074	131469074	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:131469074G>A	uc004bvw.2	+	4	887	c.494G>A	c.(493-495)AGC>AAC	p.S165N	PKN3_uc010myh.2_Missense_Mutation_p.S165N|PKN3_uc011mbk.1_5'UTR	NM_013355	NP_037487	Q6P5Z2	PKN3_HUMAN	protein kinase PKNbeta	165	REM 2.				signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein binding|protein kinase C activity			stomach(2)|lung(2)	4						AAGATCAGCAGCCTGGAGGCC	0.657												
ENDOG	2021	broad.mit.edu	37	9	131584738	131584738	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:131584738T>C	uc004bwc.2	+	3	928	c.743T>C	c.(742-744)GTG>GCG	p.V248A	C9orf114_uc004bwd.2_3'UTR|C9orf114_uc004bwe.2_3'UTR|C9orf114_uc010mym.2_RNA	NM_004435	NP_004426	Q14249	NUCG_HUMAN	endonuclease G precursor	248						mitochondrion	endonuclease activity|metal ion binding|nucleic acid binding				0						CGCACCTACGTGATGCCCAAC	0.597												
PHYHD1	254295	broad.mit.edu	37	9	131703842	131703842	+	Silent	SNP	G	G	A	rs147819781	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:131703842G>A	uc004bwo.2	+	12	1755	c.822G>A	c.(820-822)CCG>CCA	p.P274P	PHYHD1_uc004bwn.2_Missense_Mutation_p.R267Q|PHYHD1_uc004bwm.2_RNA|PHYHD1_uc004bwp.2_Silent_p.P253P|NUP188_uc004bwq.1_Silent_p.P10P	NM_001100876	NP_001094346	Q5SRE7	PHYD1_HUMAN	phytanoyl-CoA dioxygenase domain containing 1	274							metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CCTGGAGCCCGGAGAACTGGT	0.592												
DOLK	22845	broad.mit.edu	37	9	131709341	131709341	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:131709341A>G	uc004bwr.2	-	1	672	c.242T>C	c.(241-243)CTA>CCA	p.L81P	NUP188_uc004bws.1_5'Flank|NUP188_uc004bwq.1_Intron	NM_014908	NP_055723	Q9UPQ8	DOLK_HUMAN	dolichol kinase	81	Helical; (Potential).				dolichyl diphosphate biosynthetic process|dolichyl monophosphate biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to endoplasmic reticulum membrane|membrane fraction	dolichol kinase activity				0						GGCGGGCAATAGGCCACTGTT	0.577												
NUP188	23511	broad.mit.edu	37	9	131767594	131767594	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:131767594G>A	uc004bws.1	+	40	4544	c.4522G>A	c.(4522-4524)GAT>AAT	p.D1508N		NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	1508					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						CAAAAATGGGGATGGCCTCCC	0.572												
FAM73B	84895	broad.mit.edu	37	9	131832578	131832578	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:131832578A>G	uc004bxa.2	+	16	1814	c.1628A>G	c.(1627-1629)TAC>TGC	p.Y543C	FAM73B_uc004bwy.2_RNA|FAM73B_uc004bwz.2_RNA|FAM73B_uc004bxb.2_Missense_Mutation_p.Y119C	NM_032809	NP_116198	Q7L4E1	FA73B_HUMAN	hypothetical protein LOC84895	543						integral to membrane				skin(1)	1						AATGTGCGCTACACGTCACTG	0.667												
CRAT	1384	broad.mit.edu	37	9	131857756	131857756	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:131857756C>T	uc004bxh.2	-	14	2083	c.1801G>A	c.(1801-1803)GCC>ACC	p.A601T	CRAT_uc004bxg.2_Missense_Mutation_p.A580T|CRAT_uc004bxk.3_Missense_Mutation_p.A580T	NM_000755	NP_000746	P43155	CACP_HUMAN	carnitine acetyltransferase precursor	601					energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA oxidase|transport	endoplasmic reticulum|mitochondrial inner membrane|peroxisomal matrix	carnitine O-acetyltransferase activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)	L-Carnitine(DB00583)	GCCAGGCGGGCGGCGTTGGTC	0.667												
C9orf106	414318	broad.mit.edu	37	9	132084350	132084350	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:132084350T>C	uc004bxs.2	+	2	311	c.258T>C	c.(256-258)CTT>CTC	p.L86L		NM_001012715	NP_001012733	Q8NAJ2	CI106_HUMAN	hypothetical protein LOC414318	86											0		Ovarian(14;0.00556)|Medulloblastoma(224;0.235)				attgcctgctttgcacacagg	0.075												
USP20	10868	broad.mit.edu	37	9	132620767	132620767	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:132620767G>A	uc004bys.2	+	6	431	c.220G>A	c.(220-222)GTG>ATG	p.V74M	USP20_uc004byr.2_Missense_Mutation_p.V74M|USP20_uc004byt.1_Missense_Mutation_p.V74M	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	74	UBP-type.				endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				CAACTTGACCGTGAACCTGAC	0.557												
USP20	10868	broad.mit.edu	37	9	132630544	132630544	+	Silent	SNP	G	G	A	rs35868738		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:132630544G>A	uc004bys.2	+	11	1162	c.951G>A	c.(949-951)GCG>GCA	p.A317A	USP20_uc004byr.2_Silent_p.A317A|USP20_uc004byt.1_Silent_p.A317A	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	317					endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				CAGATGAGGCGGGCCGAGCCA	0.657												
FNBP1	23048	broad.mit.edu	37	9	132687349	132687349	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:132687349G>A	uc004byw.1	-	9	1096	c.877C>T	c.(877-879)CGC>TGC	p.R293C	FNBP1_uc011mbv.1_Missense_Mutation_p.R293C|FNBP1_uc011mbw.1_Missense_Mutation_p.R293C|FNBP1_uc004bza.2_Missense_Mutation_p.R293C|FNBP1_uc004byz.1_Missense_Mutation_p.R293C|FNBP1_uc004byx.1_Missense_Mutation_p.R214C|FNBP1_uc004byy.1_Missense_Mutation_p.R214C	NM_015033	NP_055848	Q96RU3	FNBP1_HUMAN	formin binding protein 1	293	Interaction with microtubules (By similarity).|Required for self-association and induction of membrane tubulation.				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|lysosome|plasma membrane	identical protein binding|lipid binding				0		Ovarian(14;0.000536)		GBM - Glioblastoma multiforme(294;0.0378)		GACACAGTGCGCTTCATTGGC	0.423			T	MLL	AML							
ASS1	445	broad.mit.edu	37	9	133342148	133342148	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:133342148C>T	uc004bzm.2	+	7	813	c.457C>T	c.(457-459)CGG>TGG	p.R153W	ASS1_uc004bzn.2_Missense_Mutation_p.R153W|ASS1_uc010mza.2_Missense_Mutation_p.R229W|ASS1_uc004bzo.2_Missense_Mutation_p.R134W|ASS1_uc010mzb.2_Missense_Mutation_p.R191W|ASS1_uc004bzp.2_Missense_Mutation_p.R153W|ASS1_uc010mzc.2_Missense_Mutation_p.R153W	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	153					arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	ATTCTACAACCGGTTCAAGGG	0.612												
FUBP3	8939	broad.mit.edu	37	9	133491810	133491810	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:133491810T>C	uc004bzr.1	+	7	581	c.473T>C	c.(472-474)ATA>ACA	p.I158T	FUBP3_uc010mzd.1_Missense_Mutation_p.I98T|FUBP3_uc004bzs.1_Missense_Mutation_p.I71T	NM_003934	NP_003925	Q96I24	FUBP3_HUMAN	far upstream element (FUSE) binding protein 3	158					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|RNA binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000279)		CATAATGACATAGACAGCAAC	0.502												
NUP214	8021	broad.mit.edu	37	9	134072751	134072751	+	Silent	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:134072751A>T	uc004cag.2	+	29	3981	c.3870A>T	c.(3868-3870)GCA>GCT	p.A1290A	NUP214_uc004cah.2_Silent_p.A1280A|NUP214_uc004cai.2_Silent_p.A720A|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Silent_p.A116A|NUP214_uc011mcf.1_Silent_p.A67A|NUP214_uc010mzh.1_5'UTR|NUP214_uc010mzi.1_5'UTR	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1290	Pro/Ser/Thr-rich.|11 X 5 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		AACCTGCCGCATCTAGCAGCA	0.547			T	DEK|SET|ABL1	AML|T-ALL							
NUP214	8021	broad.mit.edu	37	9	134073745	134073745	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:134073745T>C	uc004cag.2	+	29	4975	c.4864T>C	c.(4864-4866)TCC>CCC	p.S1622P	NUP214_uc004cah.2_Missense_Mutation_p.S1612P|NUP214_uc004cai.2_Missense_Mutation_p.S1052P|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.S448P|NUP214_uc011mcf.1_Missense_Mutation_p.S399P|NUP214_uc010mzh.1_Missense_Mutation_p.S136P|NUP214_uc010mzi.1_Missense_Mutation_p.S136P	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1622	Pro/Ser/Thr-rich.|11 X 3 AA approximate repeats.|11 X 5 AA approximate repeats.|18 X 4 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		CAGCACCACGTCCATTGTTGC	0.582			T	DEK|SET|ABL1	AML|T-ALL							
POMT1	10585	broad.mit.edu	37	9	134379614	134379614	+	Silent	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:134379614A>T	uc004cav.2	+	2	211	c.9A>T	c.(7-9)GGA>GGT	p.G3G	POMT1_uc011mci.1_Silent_p.G3G|POMT1_uc004cax.2_Silent_p.G3G|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Silent_p.G3G|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Silent_p.G3G	NM_007171	NP_009102	Q9Y6A1	POMT1_HUMAN	protein-O-mannosyltransferase 1 isoform a	3					multicellular organismal development|protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.65e-05)|Epithelial(140;0.000259)		AGATGTGGGGATTTTTGAAGC	0.582											OREG0019563	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
UCK1	83549	broad.mit.edu	37	9	134405877	134405877	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:134405877A>T	uc004cay.2	-	2	365	c.264T>A	c.(262-264)CAT>CAA	p.H88Q	UCK1_uc010mzk.2_Missense_Mutation_p.H79Q|UCK1_uc004cba.2_Missense_Mutation_p.H88Q|UCK1_uc004caz.2_RNA	NM_031432	NP_113620	Q9HA47	UCK1_HUMAN	uridine-cytidine kinase 1 isoform a	88					pyrimidine base metabolic process|pyrimidine nucleoside salvage	cytosol	ATP binding|phosphotransferase activity, alcohol group as acceptor|uridine kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;2.34e-05)|Epithelial(140;0.000219)		ATTTACCTGGATGGTCAAAAT	0.592												
NTNG2	84628	broad.mit.edu	37	9	135042324	135042324	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:135042324T>C	uc004cbh.2	+	2	882	c.106T>C	c.(106-108)TTC>CTC	p.F36L		NM_032536	NP_115925	Q96CW9	NTNG2_HUMAN	netrin G2 precursor	36	Laminin N-terminal.				axonogenesis	anchored to plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(145;1.23e-05)|Epithelial(140;0.000173)		CACCTGGGAGTTCTACGCCTG	0.607												
SETX	23064	broad.mit.edu	37	9	135152521	135152521	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:135152521T>C	uc004cbk.2	-	22	7044	c.6861A>G	c.(6859-6861)CGA>CGG	p.R2287R	SETX_uc004cbj.2_Silent_p.R1906R|SETX_uc010mzt.2_Silent_p.R1906R	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	2287					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		CTGATGAACATCGAATGGCTT	0.358												
C9orf98	158067	broad.mit.edu	37	9	135742312	135742312	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:135742312G>A	uc004cbu.1	-	3	754	c.198C>T	c.(196-198)CCC>CCT	p.P66P	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_5'UTR	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	66						cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		TCCCTGAGGCGGGTGGACCTA	0.458												
CEL	1056	broad.mit.edu	37	9	135945877	135945877	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:135945877C>T	uc010naa.1	+	10	1341	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	439					cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		TACCTGTTTTCCCATCCCTCT	0.622												
RALGDS	5900	broad.mit.edu	37	9	135985812	135985812	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:135985812G>A	uc004cco.2	-	3	379	c.359C>T	c.(358-360)ACG>ATG	p.T120M	RALGDS_uc004ccp.2_RNA|RALGDS_uc004ccq.2_Missense_Mutation_p.T120M|RALGDS_uc004ccr.2_Missense_Mutation_p.T119M|RALGDS_uc011mcv.1_Missense_Mutation_p.T103M|RALGDS_uc004ccs.2_Missense_Mutation_p.T65M|RALGDS_uc011mcw.1_Missense_Mutation_p.T191M|RALGDS_uc004ccv.1_5'Flank|RALGDS_uc004ccu.1_5'Flank	NM_006266	NP_006257	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	120	N-terminal Ras-GEF.				nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		CTTCTCCAGCGTGCCAGCCTT	0.587			T	CIITA	PMBL|Hodgkin Lymphona|							
REXO4	57109	broad.mit.edu	37	9	136279819	136279819	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:136279819T>C	uc004cdm.2	-	2	738	c.538A>G	c.(538-540)AAA>GAA	p.K180E	ADAMTS13_uc004cdp.3_Intron|REXO4_uc011mde.1_Missense_Mutation_p.K43E|REXO4_uc011mdf.1_Missense_Mutation_p.K43E|REXO4_uc004cdn.2_Intron|REXO4_uc004cdo.2_Silent_p.G120G	NM_020385	NP_065118	Q9GZR2	REXO4_HUMAN	XPMC2 prevents mitotic catastrophe 2 homolog	180						nucleolus	exonuclease activity|nucleic acid binding|sequence-specific DNA binding transcription factor activity				0				OV - Ovarian serous cystadenocarcinoma(145;8.58e-08)|Epithelial(140;9.55e-07)|all cancers(34;1.05e-05)		TCCTTAGCTTTCCGCTTCTTA	0.537												
ADAMTS13	11093	broad.mit.edu	37	9	136304555	136304555	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:136304555T>C	uc004cdv.3	+	15	2218	c.1774T>C	c.(1774-1776)TTC>CTC	p.F592L	ADAMTS13_uc004cdp.3_5'UTR|ADAMTS13_uc004cdt.1_Missense_Mutation_p.F592L|ADAMTS13_uc004cdu.1_Missense_Mutation_p.F561L|ADAMTS13_uc004cdw.3_Missense_Mutation_p.F592L|ADAMTS13_uc004cdx.3_Missense_Mutation_p.F561L|ADAMTS13_uc004cdy.1_RNA|ADAMTS13_uc004cdz.3_Missense_Mutation_p.F262L|ADAMTS13_uc004cds.1_Missense_Mutation_p.F117L|ADAMTS13_uc004cdr.1_RNA	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	592	Spacer.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		CAGGCCTCTCTTCACACACTT	0.343												
TMEM8C	389827	broad.mit.edu	37	9	136384051	136384051	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:136384051T>C	uc011mdk.1	-	3	344	c.344A>G	c.(343-345)TAC>TGC	p.Y115C		NM_001080483	NP_001073952	A6NI61	TMM8C_HUMAN	transmembrane protein 8C	115	Helical; (Potential).					integral to membrane					0						GTACACCCCGTAGCCCCATCG	0.622												
VAV2	7410	broad.mit.edu	37	9	136641200	136641200	+	Silent	SNP	C	C	T	rs150295787		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:136641200C>T	uc004ces.2	-	24	2014	c.1968G>A	c.(1966-1968)CCG>CCA	p.P656P	VAV2_uc004cer.2_Silent_p.P646P|VAV2_uc004cet.1_Silent_p.P195P	NM_001134398	NP_001127870	P52735	VAV2_HUMAN	vav 2 guanine nucleotide exchange factor isoform	656					angiogenesis|apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	metal ion binding|Rho guanyl-nucleotide exchange factor activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(145;3.9e-07)|Epithelial(140;2.07e-06)|all cancers(34;9.39e-06)		GGCTGATGGGCGGCTGGTGGC	0.617												
VAV2	7410	broad.mit.edu	37	9	136674187	136674187	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:136674187T>C	uc004ces.2	-	7	687	c.641A>G	c.(640-642)TAC>TGC	p.Y214C	VAV2_uc004cer.2_Missense_Mutation_p.Y209C	NM_001134398	NP_001127870	P52735	VAV2_HUMAN	vav 2 guanine nucleotide exchange factor isoform	214	DH.				angiogenesis|apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	metal ion binding|Rho guanyl-nucleotide exchange factor activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(145;3.9e-07)|Epithelial(140;2.07e-06)|all cancers(34;9.39e-06)		CAGGGTGCGGTAGTACTTGGC	0.587												
BRD3	8019	broad.mit.edu	37	9	136917441	136917441	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:136917441T>C	uc004cew.2	-	3	526	c.338A>G	c.(337-339)TAC>TGC	p.Y113C	BRD3_uc004cex.2_Missense_Mutation_p.Y113C	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	113	Bromo 1.					nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		GTTATAAATGTAACAATTTGT	0.468			T	NUT|C15orf55	lethal midline carcinoma of young people							
KIAA0649	9858	broad.mit.edu	37	9	138376588	138376588	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:138376588T>C	uc004cfr.1	+	4	781	c.232T>C	c.(232-234)TGC>CGC	p.C78R		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	78						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		GGCAGAGGGATGCCACGACGC	0.687												
LHX3	8022	broad.mit.edu	37	9	139092558	139092558	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:139092558G>A	uc004cha.2	-	2	218	c.121C>T	c.(121-123)CGC>TGC	p.R41C	LHX3_uc004cgz.2_Missense_Mutation_p.R46C	NM_178138	NP_835258	Q9UBR4	LHX3_HUMAN	LIM homeobox protein 3 isoform a	41	LIM zinc-binding 1.				inner ear development|organ morphogenesis|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;8.43e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.26e-07)		AGGATGAAGCGGTCCAGGATG	0.627												
PMPCA	23203	broad.mit.edu	37	9	139313291	139313291	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:139313291T>C	uc004chl.2	+	10	1126	c.1121T>C	c.(1120-1122)ATG>ACG	p.M374T	PMPCA_uc010nbl.2_Missense_Mutation_p.M274T|PMPCA_uc011mdz.1_Missense_Mutation_p.M243T|PMPCA_uc004chm.1_Missense_Mutation_p.M124T|PMPCA_uc004chn.1_5'Flank	NM_015160	NP_055975	Q10713	MPPA_HUMAN	peptidase (mitochondrial processing) alpha	374					proteolysis	mitochondrial inner membrane|mitochondrial matrix	metalloendopeptidase activity|zinc ion binding				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;9.3e-06)|Epithelial(140;1.15e-05)		CACCACTGGATGTATAACGCG	0.612												
SEC16A	9919	broad.mit.edu	37	9	139370019	139370019	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:139370019C>T	uc004chx.2	-	3	2358	c.2049G>A	c.(2047-2049)ACG>ACA	p.T683T	SEC16A_uc004chv.3_Silent_p.T310T|SEC16A_uc004chw.2_Silent_p.T683T|SEC16A_uc010nbn.2_Silent_p.T683T|SEC16A_uc010nbo.1_Silent_p.T683T	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	505					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GCACAGCTTCCGTGGTGGAGT	0.637												
SEC16A	9919	broad.mit.edu	37	9	139370931	139370931	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:139370931T>C	uc004chx.2	-	3	1446	c.1137A>G	c.(1135-1137)GGA>GGG	p.G379G	SEC16A_uc004chv.3_Silent_p.G6G|SEC16A_uc004chw.2_Silent_p.G379G|SEC16A_uc010nbn.2_Silent_p.G379G|SEC16A_uc010nbo.1_Silent_p.G379G	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	201					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		TTTCTGTCTCTCCCCCTTGGA	0.582												
MAMDC4	158056	broad.mit.edu	37	9	139752975	139752975	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:139752975A>G	uc004cjs.2	+	22	2848	c.2798A>G	c.(2797-2799)GAC>GGC	p.D933G	MAMDC4_uc011mej.1_Missense_Mutation_p.D270G	NM_206920	NP_996803	Q6UXC1	AEGP_HUMAN	apical early endosomal glycoprotein precursor	1012	Extracellular (Potential).|MAM 6.				protein transport	integral to membrane				breast(4)|upper_aerodigestive_tract(2)|central_nervous_system(1)	7	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.52e-05)|Epithelial(140;0.000171)		CCCCCTGTGGACCACACCCTG	0.701												
TRAF2	7186	broad.mit.edu	37	9	139814796	139814796	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:139814796C>T	uc010nbu.2	+	9	962	c.789C>T	c.(787-789)CAC>CAT	p.H263H	TRAF2_uc004cjv.2_Silent_p.H263H|TRAF2_uc011mek.1_Silent_p.H252H|TRAF2_uc010nbw.2_Silent_p.H238H	NM_021138	NP_066961	Q12933	TRAF2_HUMAN	TNF receptor-associated factor 2	263				Missing (in Ref. 2; BAB70792).	activation of caspase activity|activation of NF-kappaB-inducing kinase activity|activation of pro-apoptotic gene products|cellular protein complex assembly|induction of apoptosis by extracellular signals|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|protein autoubiquitination|protein homotrimerization|protein K63-linked ubiquitination|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane	CD40 receptor binding|enzyme binding|protein binding|signal transducer activity|sphingolipid binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.229)	OV - Ovarian serous cystadenocarcinoma(145;4.48e-06)|Epithelial(140;9.55e-06)		ACCAGAGCCACGCGGGGTCAG	0.622												
ABCA2	20	broad.mit.edu	37	9	139911421	139911421	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:139911421G>A	uc011mem.1	-	18	2854	c.2706C>T	c.(2704-2706)GAC>GAT	p.D902D	ABCA2_uc011mel.1_Silent_p.D903D|ABCA2_uc004ckl.1_Silent_p.D833D|ABCA2_uc004ckm.1_Silent_p.D933D|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	902	Helical; (Potential).				cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		AGACCACGGCGTCCACCATCA	0.652												
ABCA2	20	broad.mit.edu	37	9	139912270	139912270	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:139912270A>G	uc011mem.1	-	15	2325	c.2177T>C	c.(2176-2178)ATC>ACC	p.I726T	ABCA2_uc011mel.1_Missense_Mutation_p.I727T|ABCA2_uc004ckl.1_Missense_Mutation_p.I657T|ABCA2_uc004ckm.1_Missense_Mutation_p.I757T|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	726					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		CTCCGCCACGATGTGCTGGAT	0.687												
UAP1L1	91373	broad.mit.edu	37	9	139972986	139972986	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:139972986C>A	uc010ncb.2	+	3	559	c.527C>A	c.(526-528)CCC>CAC	p.P176H	UAP1L1_uc004cla.3_Missense_Mutation_p.P53H	NM_207309	NP_997192	Q3KQV9	UAP1L_HUMAN	UDP-N-acteylglucosamine pyrophosphorylase 1-like	176							nucleotidyltransferase activity			ovary(1)	1	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0821)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;2.96e-05)|Epithelial(140;0.000486)		ACTCTGGGGCCCACGGCCGAG	0.652												
NDOR1	27158	broad.mit.edu	37	9	140110800	140110800	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:140110800C>T	uc004clw.2	+	14	1837	c.1726C>T	c.(1726-1728)CCG>TCG	p.P576S	NDOR1_uc004clx.2_Missense_Mutation_p.P585S|NDOR1_uc011mes.1_Missense_Mutation_p.P569S|NDOR1_uc004cly.2_3'UTR	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	576					cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		ACTCTGCAGCCCGGACGCAGC	0.672												
TUBB2C	10383	broad.mit.edu	37	9	140136267	140136267	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:140136267A>G	uc004cmh.1	+	2	254	c.152A>G	c.(151-153)TAC>TGC	p.Y51C	TUBB2C_uc004cmg.1_5'UTR	NM_006088	NP_006079	P68371	TBB2C_HUMAN	tubulin, beta, 2	51					'de novo' posttranslational protein folding|cellular component movement|G2/M transition of mitotic cell cycle|microtubule-based movement|natural killer cell mediated cytotoxicity|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|MHC class I protein binding|structural molecule activity|unfolded protein binding			ovary(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		AACGTGTACTACAATGAGGCC	0.692												
NOXA1	10811	broad.mit.edu	37	9	140328738	140328738	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:140328738G>A	uc004cmv.2	+	14	1492	c.1357G>A	c.(1357-1359)GTG>ATG	p.V453M	C9orf167_uc011mew.1_Intron|NOXA1_uc004cmu.2_Missense_Mutation_p.V460M|NOXA1_uc010nch.2_Missense_Mutation_p.V404M	NM_006647	NP_006638	Q86UR1	NOXA1_HUMAN	NADPH oxidase activator 1	453	SH3.		Missing (in NOXA1truncated, a cDNA isolated from Caco-2 cells treated with butyrate).		regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|superoxide metabolic process	cytoplasm|NADPH oxidase complex	Rac GTPase binding|superoxide-generating NADPH oxidase activator activity				0	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000238)|Epithelial(140;0.000982)		CAAGTGCTTCGTGGTCCCCGC	0.647												
ENTPD8	377841	broad.mit.edu	37	9	140329696	140329696	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:140329696A>C	uc004cmw.2	-	9	1440	c.1256T>G	c.(1255-1257)TTC>TGC	p.F419C	C9orf167_uc011mew.1_Intron|ENTPD8_uc004cmx.2_Missense_Mutation_p.F382C	NM_001033113	NP_001028285	Q5MY95	ENTP8_HUMAN	ectonucleoside triphosphate diphosphohydrolase 8	419	Extracellular (Potential).					integral to membrane|plasma membrane	ATP binding			skin(1)	1	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000224)|Epithelial(140;0.000898)		CTCCTCGCTGAACCCGTAGCC	0.697												
ARRDC1	92714	broad.mit.edu	37	9	140508787	140508787	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:140508787G>A	uc004cns.2	+	6	729	c.655G>A	c.(655-657)GTA>ATA	p.V219I	ARRDC1_uc004cnt.2_Missense_Mutation_p.V94I|ARRDC1_uc004cnu.2_RNA|ARRDC1_uc004cnv.2_Missense_Mutation_p.V199I|ARRDC1_uc004cnw.2_Missense_Mutation_p.V94I|ARRDC1_uc004cnp.1_Missense_Mutation_p.V219I|ARRDC1_uc004cnq.1_Missense_Mutation_p.V201I|ARRDC1_uc011mfb.1_Missense_Mutation_p.V94I|ARRDC1_uc004cnx.1_Missense_Mutation_p.V94I|ARRDC1_uc004cny.2_RNA	NM_152285	NP_689498	Q8N5I2	ARRD1_HUMAN	arrestin domain containing 1	219											0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000273)|Epithelial(140;0.000464)		GATCCACGACGTACGGACCAT	0.687												
EHMT1	79813	broad.mit.edu	37	9	140685319	140685319	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:140685319C>T	uc011mfc.1	+	16	2439	c.2402C>T	c.(2401-2403)ACC>ATC	p.T801I	EHMT1_uc004cob.1_Missense_Mutation_p.T770I	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	801	ANK 2.				DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		AATATTGACACCTGCTCAGAA	0.557												
CACNA1B	774	broad.mit.edu	37	9	140968057	140968057	+	Splice_Site	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:140968057G>A	uc004cog.2	+	32	4936	c.4791_splice	c.e32+1	p.K1597_splice	CACNA1B_uc004coi.2_Splice_Site_p.K809_splice|CACNA1B_uc004cok.1_5'Flank|CACNA1B_uc010ncp.1_5'Flank	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,						membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GTCCTTCAAGGTGGGCCAGGC	0.652												
PPP2R3B	28227	broad.mit.edu	37	X	301587	301587	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:301587G>A	uc004cpg.2	-	10	1465	c.1264C>T	c.(1264-1266)CGA>TGA	p.R422*	PPP2R3B_uc004cpf.2_Nonsense_Mutation_p.R23*	NM_013239	NP_037371	Q9Y5P8	P2R3B_HUMAN	protein phosphatase 2, regulatory subunit B'',	422	EF-hand.				cell cycle arrest|protein dephosphorylation	nucleus|protein phosphatase type 2A complex	calcium ion binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TCCAGCCTTCGGCACTGCTCC	0.642												
CRLF2	64109	broad.mit.edu	37	X	1321300	1321300	+	RNA	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:1321300T>C	uc004cpm.1	-	4		c.455A>G						Q9HC73	CRLF2_HUMAN	Homo sapiens mRNA for IL-XR, complete cds.							extracellular region|integral to membrane|plasma membrane	receptor activity			haematopoietic_and_lymphoid_tissue(7)	7		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				GGGGCTCCGGTACTGAACCTC	0.637			Mis|T	P2RY8|IGH@	B-ALL|Downs associated ALL							
ZBED1	9189	broad.mit.edu	37	X	2406722	2406722	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:2406722C>G	uc004cqg.2	-	2	2240	c.2039G>C	c.(2038-2040)GGC>GCC	p.G680A	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Missense_Mutation_p.G680A	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	680						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCCGCTGACGCCATCCCCCAA	0.612												
MXRA5	25878	broad.mit.edu	37	X	3227797	3227797	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:3227797A>T	uc004crg.3	-	7	8604	c.8447T>A	c.(8446-8448)CTC>CAC	p.L2816H		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2816	Ig-like C2-type 12.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTCACTGCCGAGAATGTTTTT	0.468												
MXRA5	25878	broad.mit.edu	37	X	3239210	3239210	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:3239210T>C	uc004crg.3	-	5	4673	c.4516A>G	c.(4516-4518)ACC>GCC	p.T1506A		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1506						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTGGTGGTGGTTTGTCCCAAA	0.473												
PRKX	5613	broad.mit.edu	37	X	3573212	3573212	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:3573212A>G	uc010nde.2	-	3	944	c.577T>C	c.(577-579)TTC>CTC	p.F193L		NM_005044	NP_005035	P51817	PRKX_HUMAN	protein kinase, X-linked	193	Protein kinase.						ATP binding|cAMP-dependent protein kinase activity			skin(2)|lung(1)	3		all_lung(23;0.000396)|Lung NSC(23;0.00123)				TTCTTGGCGAACCCAAAGTCC	0.517												
PNPLA4	8228	broad.mit.edu	37	X	7889822	7889822	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:7889822T>C	uc011mhq.1	-	4	505	c.343A>G	c.(343-345)ATC>GTC	p.I115V	PNPLA4_uc011mhr.1_Missense_Mutation_p.I115V|PNPLA4_uc011mhs.1_Missense_Mutation_p.I28V	NM_004650	NP_004641	P41247	PLPL4_HUMAN	patatin-like phospholipase domain containing 4	115	Patatin.				lipid catabolic process		triglyceride lipase activity				0		Colorectal(8;0.0329)|Medulloblastoma(8;0.232)				GCGTTGGTGATGGATACGTGC	0.458												
KAL1	3730	broad.mit.edu	37	X	8538577	8538577	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:8538577A>G	uc004csf.2	-	7	1175	c.1025T>C	c.(1024-1026)GTC>GCC	p.V342A		NM_000216	NP_000207	P23352	KALM_HUMAN	Kallmann syndrome 1 protein precursor	342	Fibronectin type-III 2.				axon guidance|cell adhesion|cellular component movement	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|serine-type endopeptidase inhibitor activity			ovary(3)|pancreas(1)	4						CTTTGTTGGGACAAGAGACTT	0.502												
CLCN4	1183	broad.mit.edu	37	X	10181871	10181871	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:10181871T>A	uc004csy.3	+	11	2157	c.1727T>A	c.(1726-1728)ATC>AAC	p.I576N	CLCN4_uc011mid.1_Missense_Mutation_p.I482N	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	576	Cytoplasmic (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						GAGGCCCACATCCACTTAAAT	0.607												
MID1	4281	broad.mit.edu	37	X	10534991	10534991	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:10534991T>C	uc004cte.3	-	2	788	c.597A>G	c.(595-597)AAA>AAG	p.K199K	MID1_uc004ctd.3_5'Flank|MID1_uc004ctg.3_Silent_p.K199K|MID1_uc004cth.3_Intron|MID1_uc004ctk.3_Silent_p.K199K|MID1_uc004cti.3_Silent_p.K199K|MID1_uc004ctj.3_Silent_p.K199K|MID1_uc011mie.1_Intron|MID1_uc004ctm.1_Silent_p.K199K|MID1_uc004ctn.1_Silent_p.K199K|MID1_uc004cto.1_Intron|MID1_uc010ndw.1_5'Flank|MID1_uc004cts.1_5'Flank|MID1_uc004ctt.2_Silent_p.K199K|MID1_uc004ctu.2_Silent_p.K199K|MID1_uc004ctv.2_Intron|MID1_uc004ctw.2_Intron|MID1_uc010ndy.1_Silent_p.K199K|uc010ndz.1_5'Flank|MID1_uc004cty.2_Intron|MID1_uc004ctz.1_5'Flank|MID1_uc004cua.1_RNA|MID1_uc004cub.1_Silent_p.K199K|MID1_uc010nea.1_Intron|MID1_uc004cuc.1_Silent_p.K199K|MID1_uc004cud.1_Silent_p.K199K|MID1_uc004cue.1_Intron|MID1_uc004cuf.1_Intron	NM_033290	NP_150632	O15344	TRI18_HUMAN	midline 1	199	B box-type 2.				microtubule cytoskeleton organization|pattern specification process|positive regulation of stress-activated MAPK cascade	cytoplasm|microtubule|microtubule associated complex|spindle	ligase activity|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|pancreas(1)	3						GCCCAACCAGTTTACACAAGG	0.527												
MSL3	10943	broad.mit.edu	37	X	11778586	11778586	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:11778586C>T	uc004cuw.2	+	3	355	c.250C>T	c.(250-252)CGT>TGT	p.R84C	MSL3_uc004cuv.1_Missense_Mutation_p.R84C|MSL3_uc004cux.2_Missense_Mutation_p.R25C|MSL3_uc011mig.1_5'UTR|MSL3_uc011mih.1_Missense_Mutation_p.R72C|MSL3_uc004cuy.2_5'UTR|MSL3_uc011mii.1_5'UTR	NM_078629	NP_523353	Q8N5Y2	MS3L1_HUMAN	male-specific lethal 3-like 1 isoform a	84	Chromo.				histone H4-K16 acetylation|multicellular organismal development|transcription from RNA polymerase II promoter	MSL complex	DNA binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TAGATTACAGCGTAAATTGGC	0.343												
FRMPD4	9758	broad.mit.edu	37	X	12728653	12728653	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:12728653A>C	uc004cuz.1	+	14	2112	c.1606A>C	c.(1606-1608)ACA>CCA	p.T536P	FRMPD4_uc011mij.1_Missense_Mutation_p.T528P	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	536					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GACCCAGGAAACAGGTATTCT	0.443												
PRPS2	5634	broad.mit.edu	37	X	12837742	12837742	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:12837742C>T	uc004cvb.2	+	5	771	c.647C>T	c.(646-648)GCC>GTC	p.A216V	PRPS2_uc004cva.2_Missense_Mutation_p.A219V|PRPS2_uc010nec.2_Intron	NM_002765	NP_002756	P11908	PRPS2_HUMAN	phosphoribosyl pyrophosphate synthetase 2	216	Binding of phosphoribosylpyrophosphate (Potential).				nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity				0						GACCGTGTGGCCATCCTCGTG	0.557												
GEMIN8	54960	broad.mit.edu	37	X	14027269	14027269	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:14027269A>T	uc004cwb.2	-	5	835	c.492T>A	c.(490-492)GAT>GAA	p.D164E	GEMIN8_uc004cwc.2_Missense_Mutation_p.D164E|GEMIN8_uc004cwd.2_Missense_Mutation_p.D164E	NM_017856	NP_060326	Q9NWZ8	GEMI8_HUMAN	gem (nuclear organelle) associated protein 8	164	Potential.				spliceosomal snRNP assembly	Cajal body|cytoplasm|SMN complex|spliceosomal complex	protein binding				0						GGCGCTCTGCATCCAGCTGCT	0.597												
GLRA2	2742	broad.mit.edu	37	X	14599525	14599525	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:14599525T>C	uc010nep.2	+	5	823	c.491T>C	c.(490-492)ATC>ACC	p.I164T	GLRA2_uc010neq.2_Missense_Mutation_p.I164T|GLRA2_uc004cwe.3_Missense_Mutation_p.I164T|GLRA2_uc011mio.1_Missense_Mutation_p.I75T|GLRA2_uc011mip.1_Missense_Mutation_p.I142T	NM_001118885	NP_001112357	P23416	GLRA2_HUMAN	glycine receptor, alpha 2 isoform A	164	Extracellular (Probable).				neuropeptide signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(1)|lung(1)	2	Hepatocellular(33;0.128)				Ethanol(DB00898)|Glycine(DB00145)	CTCTACAGTATCAGGTAAGCC	0.438												
FANCB	2187	broad.mit.edu	37	X	14883327	14883327	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:14883327A>G	uc004cwg.1	-	3	574	c.306T>C	c.(304-306)AAT>AAC	p.N102N	FANCB_uc004cwh.1_Silent_p.N102N	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	102					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					CAAAAACATTATTCTTTTTAT	0.303								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia			
ASB11	140456	broad.mit.edu	37	X	15311390	15311390	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:15311390C>T	uc004cwp.1	-	4	422	c.422G>A	c.(421-423)AGC>AAC	p.S141N	ASB11_uc004cwo.1_Missense_Mutation_p.S120N|ASB11_uc010nes.1_RNA|ASB11_uc010net.1_Missense_Mutation_p.S124N	NM_080873	NP_543149	Q8WXH4	ASB11_HUMAN	ankyrin repeat and SOCS box-containing protein	141	ANK 3.				intracellular signal transduction					breast(2)|skin(1)	3	Hepatocellular(33;0.183)					AGCACTGCCGCTGCAGCAAGC	0.537												
BMX	660	broad.mit.edu	37	X	15552464	15552464	+	Splice_Site	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:15552464T>C	uc004cww.2	+	12	1335	c.1147_splice	c.e12+2	p.G383_splice	BMX_uc004cwx.3_Splice_Site_p.G383_splice|BMX_uc004cwy.3_Splice_Site_p.G383_splice	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase						cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					ATTCAGCAGGTAACTTATTTT	0.333												
BMX	660	broad.mit.edu	37	X	15555366	15555366	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:15555366T>C	uc004cww.2	+	14	1520	c.1332T>C	c.(1330-1332)GTT>GTC	p.V444V	BMX_uc004cwx.3_Silent_p.V444V|BMX_uc004cwy.3_Silent_p.V444V	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase	444	Protein kinase.				cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					ATGTTGCTGTTAAGATGATCA	0.473												
SYAP1	94056	broad.mit.edu	37	X	16775393	16775393	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:16775393G>A	uc004cxp.2	+	8	985	c.892G>A	c.(892-894)GTG>ATG	p.V298M	SYAP1_uc004cxo.2_Missense_Mutation_p.V298M|SYAP1_uc011miv.1_Missense_Mutation_p.V264M	NM_032796	NP_116185	Q96A49	SYAP1_HUMAN	SYAP1 protein	298										skin(1)	1	Hepatocellular(33;0.0997)					GGAGCAACTAGTGCTTGACAA	0.393												
SCML1	6322	broad.mit.edu	37	X	17771410	17771410	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:17771410G>A	uc004cyb.2	+	8	1213	c.888G>A	c.(886-888)ACG>ACA	p.T296T	SCML1_uc004cyc.2_Silent_p.T269T|SCML1_uc004cyd.2_Silent_p.T175T|SCML1_uc004cye.2_Silent_p.T175T	NM_001037540	NP_001032629	Q9UN30	SCML1_HUMAN	sex comb on midleg-like 1 isoform a	296	SAM.				anatomical structure morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)	3	Hepatocellular(33;0.183)					TCCTACTCACGAGTGACGTGT	0.413												
RAI2	10742	broad.mit.edu	37	X	17819375	17819375	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:17819375C>T	uc004cyf.2	-	3	1326	c.756G>A	c.(754-756)ATG>ATA	p.M252I	RAI2_uc004cyg.2_Missense_Mutation_p.M252I|RAI2_uc010nfa.2_Missense_Mutation_p.M252I|RAI2_uc004cyh.3_Missense_Mutation_p.M252I|RAI2_uc011miy.1_Missense_Mutation_p.M202I	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	252	Pro-rich.				embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					AACTCTGAGGCATCGGGATGG	0.587												
GPR64	10149	broad.mit.edu	37	X	19020962	19020962	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:19020962A>G	uc004cyx.2	-	24	2394	c.2230_splice	c.e24+1	p.G744_splice	GPR64_uc004cyy.2_Splice_Site_p.G741_splice|GPR64_uc004cyz.2_Splice_Site_p.G730_splice|GPR64_uc004czb.2_Splice_Site_p.G744_splice|GPR64_uc004czc.2_Splice_Site_p.G728_splice|GPR64_uc004czd.2_Splice_Site_p.G720_splice|GPR64_uc004cze.2_Splice_Site_p.G714_splice|GPR64_uc004czf.2_Splice_Site_p.G706_splice|GPR64_uc004cza.2_Splice_Site_p.G722_splice|GPR64_uc004cyw.2_Splice_Site_p.G728_splice|GPR64_uc010nfj.2_Splice_Site_p.G625_splice	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1						neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					GCTTATACATACCCCAACCGA	0.423												
GPR64	10149	broad.mit.edu	37	X	19031984	19031984	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:19031984A>G	uc004cyx.2	-	16	1083	c.919T>C	c.(919-921)TCA>CCA	p.S307P	GPR64_uc004cyy.2_Missense_Mutation_p.S304P|GPR64_uc004cyz.2_Missense_Mutation_p.S293P|GPR64_uc004czb.2_Missense_Mutation_p.S307P|GPR64_uc004czc.2_Missense_Mutation_p.S291P|GPR64_uc004czd.2_Missense_Mutation_p.S283P|GPR64_uc004cze.2_Missense_Mutation_p.S277P|GPR64_uc004czf.2_Missense_Mutation_p.S269P|GPR64_uc004cza.2_Missense_Mutation_p.S285P|GPR64_uc004cyw.2_Missense_Mutation_p.S291P|GPR64_uc010nfj.2_Missense_Mutation_p.S277P	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	307	Extracellular (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					ATGGGAGCTGAAGGCTGGGGT	0.557												
GPR64	10149	broad.mit.edu	37	X	19041550	19041550	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:19041550T>C	uc004cyx.2	-	13	696	c.532A>G	c.(532-534)ACA>GCA	p.T178A	GPR64_uc004cyy.2_Missense_Mutation_p.T175A|GPR64_uc004cyz.2_Missense_Mutation_p.T164A|GPR64_uc004czb.2_Missense_Mutation_p.T178A|GPR64_uc004czc.2_Missense_Mutation_p.T162A|GPR64_uc004czd.2_Missense_Mutation_p.T154A|GPR64_uc004cze.2_Missense_Mutation_p.T148A|GPR64_uc004czf.2_Missense_Mutation_p.T140A|GPR64_uc004cza.2_Missense_Mutation_p.T156A|GPR64_uc004cyw.2_Missense_Mutation_p.T162A|GPR64_uc010nfj.2_Missense_Mutation_p.T148A	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	178	Extracellular (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					GCCTCTGCTGTAGCACACATT	0.308												
RPS6KA3	6197	broad.mit.edu	37	X	20190977	20190977	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:20190977T>C	uc004czu.2	-	15	1240	c.1240A>G	c.(1240-1242)AAC>GAC	p.N414D	RPS6KA3_uc011mjk.1_Missense_Mutation_p.N384D|RPS6KA3_uc004czv.2_Missense_Mutation_p.N401D|RPS6KA3_uc011mjl.1_Missense_Mutation_p.N385D|RPS6KA3_uc011mjm.1_Missense_Mutation_p.N386D	NM_004586	NP_004577	P51812	KS6A3_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	414					axon guidance|central nervous system development|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|skeletal system development|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(4)|stomach(1)|ovary(1)|lung(1)|breast(1)	8						TGAATACTGTTCCTGTGTAAC	0.343												
CNKSR2	22866	broad.mit.edu	37	X	21581506	21581506	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:21581506T>C	uc004czx.1	+	13	1580	c.1544T>C	c.(1543-1545)TTA>TCA	p.L515S	CNKSR2_uc004czw.2_Missense_Mutation_p.L515S|CNKSR2_uc011mjn.1_Missense_Mutation_p.L466S|CNKSR2_uc011mjo.1_Missense_Mutation_p.L485S|CNKSR2_uc004czy.2_Missense_Mutation_p.L107S	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	515	DUF1170.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						CTACCTAGTTTACAAATGGAT	0.393												
MBTPS2	51360	broad.mit.edu	37	X	21896666	21896666	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:21896666A>G	uc004dae.2	+	9	1314	c.1117A>G	c.(1117-1119)ACC>GCC	p.T373A	MBTPS2_uc010nfr.2_5'UTR	NM_015884	NP_056968	O43462	MBTP2_HUMAN	membrane-bound transcription factor peptidase,	373	Cys-rich.|Lumenal (Probable).				cholesterol metabolic process|proteolysis	Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity			ovary(1)	1						AGTTTGCAGAACCAATAAAGA	0.323												
MBTPS2	51360	broad.mit.edu	37	X	21896713	21896713	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:21896713A>G	uc004dae.2	+	9	1361	c.1164A>G	c.(1162-1164)ATA>ATG	p.I388M	MBTPS2_uc010nfr.2_Translation_Start_Site	NM_015884	NP_056968	O43462	MBTP2_HUMAN	membrane-bound transcription factor peptidase,	388	Lumenal (Probable).				cholesterol metabolic process|proteolysis	Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity			ovary(1)	1						TCTGTATAATACCTTCTTTGG	0.393												
PHEX	5251	broad.mit.edu	37	X	22196458	22196458	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:22196458T>G	uc004dah.2	+	14	1754	c.1551T>G	c.(1549-1551)GAT>GAG	p.D517E	PHEX_uc011mjr.1_Missense_Mutation_p.D517E|PHEX_uc011mjs.1_Missense_Mutation_p.D420E	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	517	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						CACAGTCTGATTTCTTCTGGC	0.358												
DMD	1756	broad.mit.edu	37	X	31222113	31222113	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:31222113T>C	uc004dda.1	-	67	10016	c.9772A>G	c.(9772-9774)AAC>GAC	p.N3258D	DMD_uc004dcq.1_Missense_Mutation_p.N529D|DMD_uc004dcr.1_Missense_Mutation_p.N798D|DMD_uc004dcs.1_Missense_Mutation_p.N798D|DMD_uc004dct.1_Missense_Mutation_p.N798D|DMD_uc004dcu.1_Missense_Mutation_p.N798D|DMD_uc004dcv.1_Missense_Mutation_p.N798D|DMD_uc004dcw.2_Missense_Mutation_p.N1914D|DMD_uc004dcx.2_Missense_Mutation_p.N1917D|DMD_uc004dcz.2_Missense_Mutation_p.N3135D|DMD_uc004dcy.1_Missense_Mutation_p.N3254D|DMD_uc004ddb.1_Missense_Mutation_p.N3250D|DMD_uc004dcm.1_Missense_Mutation_p.N190D|DMD_uc004dcn.1_Missense_Mutation_p.N190D|DMD_uc004dco.1_Missense_Mutation_p.N190D|DMD_uc004dcp.1_Missense_Mutation_p.N190D|DMD_uc011mkb.1_Missense_Mutation_p.N190D|DMD_uc010ngm.2_Missense_Mutation_p.N190D	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	3258	Interaction with SYNM (By similarity).				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GGCTCAATGTTACTGCCCCCA	0.403												
DMD	1756	broad.mit.edu	37	X	31496459	31496459	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:31496459T>C	uc004dda.1	-	59	8945	c.8701A>G	c.(8701-8703)ACT>GCT	p.T2901A	DMD_uc004dcq.1_Missense_Mutation_p.T172A|DMD_uc004dcr.1_Missense_Mutation_p.T441A|DMD_uc004dcs.1_Missense_Mutation_p.T441A|DMD_uc004dct.1_Missense_Mutation_p.T441A|DMD_uc004dcu.1_Missense_Mutation_p.T441A|DMD_uc004dcv.1_Missense_Mutation_p.T441A|DMD_uc004dcw.2_Missense_Mutation_p.T1557A|DMD_uc004dcx.2_Missense_Mutation_p.T1560A|DMD_uc004dcz.2_Missense_Mutation_p.T2778A|DMD_uc004dcy.1_Missense_Mutation_p.T2897A|DMD_uc004ddb.1_Missense_Mutation_p.T2893A	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2901	Spectrin 20.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				AGAAGCCGAGTGACATTCTGG	0.438												
FAM47A	158724	broad.mit.edu	37	X	34150216	34150216	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:34150216G>A	uc004ddg.2	-	1	213	c.180C>T	c.(178-180)TAC>TAT	p.Y60Y		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	60										ovary(4)|central_nervous_system(1)	5						ACGGACAGCCGTAGCGGAAGT	0.567												
SYTL5	94122	broad.mit.edu	37	X	37935887	37935887	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:37935887C>T	uc004ddu.2	+	7	1156	c.622C>T	c.(622-624)CGG>TGG	p.R208W	SYTL5_uc004ddv.2_Missense_Mutation_p.R208W|SYTL5_uc004ddx.2_Missense_Mutation_p.R208W	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	208					intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						TGACACTGGGCGGAGCTATAG	0.383												
BCOR	54880	broad.mit.edu	37	X	39911469	39911469	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:39911469T>A	uc004den.3	-	15	5453	c.5161A>T	c.(5161-5163)AAG>TAG	p.K1721*	BCOR_uc004dep.3_Nonsense_Mutation_p.K1687*|BCOR_uc004deo.3_Nonsense_Mutation_p.K1669*|BCOR_uc010nhb.2_3'UTR|BCOR_uc004dem.3_Nonsense_Mutation_p.K1687*	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	1721					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						AACAGCTCCTTACTTTCAGGG	0.488												
ATP6AP2	10159	broad.mit.edu	37	X	40450603	40450603	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:40450603T>C	uc004det.2	+	3	388	c.286T>C	c.(286-288)TAC>CAC	p.Y96H	ATP6AP2_uc010nhc.2_RNA|ATP6AP2_uc011mkl.1_Missense_Mutation_p.Y20H|ATP6AP2_uc011mkm.1_Missense_Mutation_p.Y96H|ATP6AP2_uc011mkn.1_Missense_Mutation_p.Y96H	NM_005765	NP_005756	O75787	RENR_HUMAN	ATPase, H+ transporting, lysosomal accessory	96	Extracellular (Potential).				angiotensin maturation|positive regulation of transforming growth factor-beta1 production|regulation of MAPKKK cascade	external side of plasma membrane|integral to membrane	protein binding|receptor activity				0						TGTCATTTCGTACCCTTTGGA	0.423												
ATP6AP2	10159	broad.mit.edu	37	X	40464919	40464919	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:40464919T>C	uc004det.2	+	9	1067	c.965T>C	c.(964-966)ATT>ACT	p.I322T	ATP6AP2_uc010nhc.2_RNA|ATP6AP2_uc011mkl.1_Missense_Mutation_p.I246T|ATP6AP2_uc011mkm.1_Missense_Mutation_p.I290T|ATP6AP2_uc011mkn.1_Missense_Mutation_p.I244T|ATP6AP2_uc004deu.1_Missense_Mutation_p.I186T	NM_005765	NP_005756	O75787	RENR_HUMAN	ATPase, H+ transporting, lysosomal accessory	322	Helical; (Potential).				angiotensin maturation|positive regulation of transforming growth factor-beta1 production|regulation of MAPKKK cascade	external side of plasma membrane|integral to membrane	protein binding|receptor activity				0						TTGGCTGTGATTATCACCTCT	0.378												
USP9X	8239	broad.mit.edu	37	X	40994031	40994031	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:40994031A>C	uc004dfb.2	+	5	1009	c.376A>C	c.(376-378)ATA>CTA	p.I126L	USP9X_uc004dfc.2_Missense_Mutation_p.I126L	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	126					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						TGGGCTAACAATATCATTCAC	0.353												
NYX	60506	broad.mit.edu	37	X	41333485	41333485	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:41333485A>G	uc004dfh.2	+	2	1209	c.779A>G	c.(778-780)AAC>AGC	p.N260S	NYX_uc011mku.1_Missense_Mutation_p.N255S	NM_022567	NP_072089	Q9GZU5	NYX_HUMAN	nyctalopin precursor	260	LRR 9.				response to stimulus|visual perception	intracellular|proteinaceous extracellular matrix				lung(2)	2						CGCACGCTCAACCTGGGTGGC	0.706												
EFHC2	80258	broad.mit.edu	37	X	44109680	44109680	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:44109680G>A	uc004dgb.3	-	6	708	c.618C>T	c.(616-618)CAC>CAT	p.H206H		NM_025184	NP_079460	Q5JST6	EFHC2_HUMAN	EF-hand domain (C-terminal) containing 2	206							calcium ion binding			breast(3)|ovary(2)|central_nervous_system(1)	6						AGGGCTCTACGTGTTCTACAA	0.408												
KDM6A	7403	broad.mit.edu	37	X	44922891	44922891	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:44922891G>A	uc004dge.3	+	16	2127	c.1752G>A	c.(1750-1752)ACG>ACA	p.T584T	KDM6A_uc010nhk.2_Silent_p.T550T|KDM6A_uc011mkz.1_Silent_p.T636T|KDM6A_uc011mla.1_Silent_p.T539T|KDM6A_uc011mlb.1_Silent_p.T591T|KDM6A_uc011mlc.1_Silent_p.T288T|KDM6A_uc011mld.1_Silent_p.T223T	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	584					histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						CATCAAGAACGCTGGGAAGTA	0.512			D|N|F|S		renal|oesophageal SCC|MM							
KDM6A	7403	broad.mit.edu	37	X	44950035	44950035	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:44950035A>G	uc004dge.3	+	26	4179	c.3804A>G	c.(3802-3804)GTA>GTG	p.V1268V	KDM6A_uc011mkz.1_Silent_p.V1320V|KDM6A_uc011mla.1_Silent_p.V1223V|KDM6A_uc011mlb.1_Silent_p.V1275V|KDM6A_uc011mlc.1_Silent_p.V972V|KDM6A_uc011mld.1_Silent_p.V907V	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	1268					histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						AGTCAATAGTACCCATGGTTC	0.373			D|N|F|S		renal|oesophageal SCC|MM							
RBM10	8241	broad.mit.edu	37	X	47030548	47030548	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:47030548G>A	uc004dhf.2	+	4	702	c.323G>A	c.(322-324)CGG>CAG	p.R108Q	RBM10_uc004dhe.1_Missense_Mutation_p.R98Q|RBM10_uc004dhg.2_Intron|RBM10_uc004dhh.2_Missense_Mutation_p.R108Q|RBM10_uc010nhq.2_Intron|RBM10_uc004dhi.2_Missense_Mutation_p.R173Q	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	108					mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						CAGGACTATCGGACCGAGCAA	0.532												
CDK16	5127	broad.mit.edu	37	X	47084389	47084389	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:47084389T>C	uc004dho.2	+	6	918	c.522T>C	c.(520-522)GGT>GGC	p.G174G	CDK16_uc011mli.1_Silent_p.G180G|CDK16_uc011mlj.1_Silent_p.G174G|CDK16_uc011mlk.1_Silent_p.G174G|CDK16_uc011mll.1_Silent_p.G248G	NM_006201	NP_006192	Q00536	CDK16_HUMAN	PCTAIRE protein kinase 1 isoform 1	174	ATP (By similarity).|Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|protein binding			lung(1)	1						CATTCCAGGGTACCTATGCCA	0.542												
CDK16	5127	broad.mit.edu	37	X	47087990	47087990	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:47087990A>T	uc004dho.2	+	15	1796	c.1400A>T	c.(1399-1401)GAG>GTG	p.E467V	CDK16_uc011mli.1_Missense_Mutation_p.E473V|CDK16_uc011mlk.1_Missense_Mutation_p.E474V|CDK16_uc011mll.1_Missense_Mutation_p.E541V	NM_006201	NP_006192	Q00536	CDK16_HUMAN	PCTAIRE protein kinase 1 isoform 1	467							ATP binding|cyclin-dependent protein kinase activity|protein binding			lung(1)	1						GCACTAAAGGAGATTCAGCTA	0.493												
USP11	8237	broad.mit.edu	37	X	47100775	47100775	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:47100775G>A	uc004dhp.2	+	8	1075	c.1075G>A	c.(1075-1077)GCA>ACA	p.A359T	USP11_uc004dhq.2_Missense_Mutation_p.A86T	NM_004651	NP_004642	P51784	UBP11_HUMAN	ubiquitin specific peptidase 11	359					protein deubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)|lung(1)|central_nervous_system(1)	3						GGGTGAGATCGCAGAGGCCTA	0.592												
USP11	8237	broad.mit.edu	37	X	47107040	47107040	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:47107040G>A	uc004dhp.2	+	20	2696	c.2696G>A	c.(2695-2697)GGC>GAC	p.G899D	USP11_uc004dhq.2_Missense_Mutation_p.G625D	NM_004651	NP_004642	P51784	UBP11_HUMAN	ubiquitin specific peptidase 11	899					protein deubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)|lung(1)|central_nervous_system(1)	3						AAGGACAGCGGCCAGTGGCAC	0.507												
ARAF	369	broad.mit.edu	37	X	47428172	47428172	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:47428172T>C	uc011mlq.1	+	11	1265	c.1132T>C	c.(1132-1134)TTT>CTT	p.F378L	ARAF_uc011mln.1_RNA|ARAF_uc011mlo.1_Missense_Mutation_p.F244L|ARAF_uc011mlp.1_Missense_Mutation_p.F378L|ARAF_uc004dic.1_Missense_Mutation_p.F159L	NM_001654	NP_001645	P10398	ARAF_HUMAN	v-raf murine sarcoma 3611 viral oncogene	378	Protein kinase.			F -> V (in Ref. 6; AAB08754).	intracellular signal transduction|negative regulation of apoptosis|positive regulation of peptidyl-serine phosphorylation		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity			large_intestine(3)|lung(2)|ovary(1)|skin(1)	7					Adenosine triphosphate(DB00171)	CCGGCCGGGATTTGCCATCAT	0.582											OREG0019759	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
ZNF182	7569	broad.mit.edu	37	X	47836190	47836190	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:47836190A>G	uc004dir.2	-	7	1642	c.1296T>C	c.(1294-1296)TGT>TGC	p.C432C	ZNF182_uc004dis.2_Silent_p.C413C|ZNF182_uc004dit.2_Silent_p.C432C|ZNF182_uc011mlu.1_Silent_p.C412C	NM_006962	NP_008893	P17025	ZN182_HUMAN	zinc finger protein 21 isoform 1	432	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3						CACACACATCACATTCATAGG	0.393												
PORCN	64840	broad.mit.edu	37	X	48370833	48370833	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:48370833A>G	uc010nie.1	+	5	651	c.493A>G	c.(493-495)ATC>GTC	p.I165V	PORCN_uc004djr.1_Missense_Mutation_p.I165V|PORCN_uc004djs.1_Missense_Mutation_p.I165V|PORCN_uc004djt.1_Missense_Mutation_p.I94V|PORCN_uc011mlx.1_Missense_Mutation_p.I94V|PORCN_uc004dju.1_Missense_Mutation_p.I34V|PORCN_uc004djv.1_Missense_Mutation_p.I165V|PORCN_uc004djw.1_Missense_Mutation_p.I165V	NM_203475	NP_982301	Q9H237	PORCN_HUMAN	porcupine isoform D	165	Helical; (Potential).				Wnt receptor signaling pathway	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(2)|central_nervous_system(1)	3						CGTGGGCACCATCGTCTTCGG	0.627												
KCND1	3750	broad.mit.edu	37	X	48826140	48826140	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:48826140T>C	uc004dlx.1	-	1	2112	c.539A>G	c.(538-540)CAC>CGC	p.H180R	KCND1_uc004dlw.1_5'Flank	NM_004979	NP_004970	Q9NSA2	KCND1_HUMAN	potassium voltage-gated channel, Shal-related	180	Cytoplasmic (Potential).					voltage-gated potassium channel complex	metal ion binding|voltage-gated potassium channel activity			ovary(2)|lung(1)	3						GGTGCTCGTGTGTGGATTCTC	0.657												
CACNA1F	778	broad.mit.edu	37	X	49082529	49082529	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:49082529C>T	uc004dnb.2	-	13	1588	c.1526G>A	c.(1525-1527)CGC>CAC	p.R509H	CACNA1F_uc010nip.2_Missense_Mutation_p.R498H	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	509	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	GCGGAGGCGGCGGCTGGGGGA	0.662												
PPP1R3F	89801	broad.mit.edu	37	X	49143293	49143293	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:49143293T>C	uc004dnh.1	+	4	2157	c.2141T>C	c.(2140-2142)GTC>GCC	p.V714A	PPP1R3F_uc011mnd.1_Missense_Mutation_p.V385A|PPP1R3F_uc004dni.2_Missense_Mutation_p.V368A|PPP1R3F_uc004dnj.1_Missense_Mutation_p.V368A	NM_033215	NP_149992	Q6ZSY5	PPR3F_HUMAN	protein phosphatase 1, regulatory (inhibitor)	714	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	Ovarian(276;0.236)					GGGGCCGAAGTCTGTCTCTCT	0.592												
PPP1R3F	89801	broad.mit.edu	37	X	49143411	49143411	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:49143411T>C	uc004dnh.1	+	4	2275	c.2259T>C	c.(2257-2259)TGT>TGC	p.C753C	PPP1R3F_uc011mnd.1_Silent_p.C424C|PPP1R3F_uc004dni.2_Silent_p.C407C|PPP1R3F_uc004dnj.1_Silent_p.C407C	NM_033215	NP_149992	Q6ZSY5	PPR3F_HUMAN	protein phosphatase 1, regulatory (inhibitor)	753	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	Ovarian(276;0.236)					AATGTGTGTGTGCACTGCCTC	0.627												
AKAP4	8852	broad.mit.edu	37	X	49957564	49957564	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:49957564T>C	uc004dow.1	-	5	1924	c.1800A>G	c.(1798-1800)CAA>CAG	p.Q600Q	AKAP4_uc004dov.1_Silent_p.Q217Q|AKAP4_uc010njp.1_Silent_p.Q422Q|AKAP4_uc004dou.1_Silent_p.Q591Q	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	600					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					GAGATTCTAGTTGTTTCACTG	0.463												
AKAP4	8852	broad.mit.edu	37	X	49958802	49958802	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:49958802T>C	uc004dow.1	-	5	686	c.562A>G	c.(562-564)AAT>GAT	p.N188D	AKAP4_uc004dov.1_Missense_Mutation_p.N179D|AKAP4_uc010njp.1_Missense_Mutation_p.N10D|AKAP4_uc004dou.1_Missense_Mutation_p.N179D	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	188					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					GGACTTTGATTATTGTTGGTG	0.428												
DGKK	139189	broad.mit.edu	37	X	50146513	50146513	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:50146513G>A	uc010njr.1	-	6	1221	c.1161C>T	c.(1159-1161)GAC>GAT	p.D387D		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	387					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					GCAGAAGGAGGTCATCAGTGA	0.483												
TSPYL2	64061	broad.mit.edu	37	X	53114010	53114010	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:53114010A>G	uc004drw.2	+	3	1091	c.959A>G	c.(958-960)AAC>AGC	p.N320S	TSPYL2_uc004drv.2_Missense_Mutation_p.N364S|TSPYL2_uc004drx.1_5'UTR	NM_022117	NP_071400	Q9H2G4	TSYL2_HUMAN	TSPY-like 2	320					cell cycle|chromatin modification|negative regulation of cell cycle|negative regulation of cell growth|negative regulation of DNA replication|nucleosome assembly|regulation of protein kinase activity|regulation of signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|rDNA binding				0						TACTTCACAAACATGGTGATT	0.498												
IQSEC2	23096	broad.mit.edu	37	X	53285092	53285092	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:53285092G>A	uc004dsd.2	-	3	1090	c.889C>T	c.(889-891)CGC>TGC	p.R297C	IQSEC2_uc004dsc.2_Missense_Mutation_p.R92C	NM_001111125	NP_001104595	Q5JU85	IQEC2_HUMAN	IQ motif and Sec7 domain 2 isoform1	287					regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3						GGCTGGAGGCGTGCCCGCTGA	0.672												
HUWE1	10075	broad.mit.edu	37	X	53563521	53563521	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:53563521C>T	uc004dsp.2	-	79	12647	c.12245G>A	c.(12244-12246)CGT>CAT	p.R4082H	HUWE1_uc004dsn.2_Missense_Mutation_p.R2890H	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	4082	HECT.				base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity	p.R3972H(1)		ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						AGGTGAGGTACGGAACAAGGC	0.512												
PHF8	23133	broad.mit.edu	37	X	54022124	54022124	+	Splice_Site	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:54022124A>G	uc004dsu.2	-	12	1504	c.1431_splice	c.e12+1	p.E477_splice	PHF8_uc004dst.2_Splice_Site_p.E441_splice|PHF8_uc004dsv.2_Splice_Site_p.E307_splice|PHF8_uc004dsw.2_Splice_Site_p.E441_splice|PHF8_uc004dsx.2_Splice_Site_p.E205_splice|PHF8_uc004dsy.2_Splice_Site_p.E441_splice	NM_015107	NP_055922	Q9UPP1	PHF8_HUMAN	PHD finger protein 8						brain development|G1/S transition of mitotic cell cycle|negative regulation of chromatin silencing at rDNA|positive regulation of transcription from RNA polymerase I promoter|transcription, DNA-dependent	nucleolus	chromatin binding|histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(3)	3						CATGCTCCTTACTTCCACCAG	0.557												
FGD1	2245	broad.mit.edu	37	X	54475618	54475618	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:54475618A>G	uc004dtg.2	-	15	2966	c.2232T>C	c.(2230-2232)AAT>AAC	p.N744N	FGD1_uc011moi.1_Silent_p.N502N	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	744	FYVE-type.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TGGTGATAGAATTGAAGGGCT	0.612												
FGD1	2245	broad.mit.edu	37	X	54492003	54492003	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:54492003T>A	uc004dtg.2	-	8	2251	c.1517A>T	c.(1516-1518)AAC>ATC	p.N506I	FGD1_uc011moi.1_Missense_Mutation_p.N264I	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	506	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CAATGTCAGGTTGCCACAGGC	0.592												
FGD1	2245	broad.mit.edu	37	X	54497788	54497788	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:54497788C>T	uc004dtg.2	-	2	1174	c.440G>A	c.(439-441)CGT>CAT	p.R147H	FGD1_uc011moi.1_5'Flank	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	147	Pro-rich.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TGGTGAAGGACGCTGGCTAGG	0.627												
TRO	7216	broad.mit.edu	37	X	54956700	54956700	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:54956700T>C	uc004dtq.2	+	12	3650	c.3543T>C	c.(3541-3543)GGT>GGC	p.G1181G	TRO_uc004dts.2_Intron|TRO_uc004dtr.2_Intron|TRO_uc004dtt.2_Intron|TRO_uc004dtu.2_Intron|TRO_uc004dtv.2_Intron|TRO_uc011mok.1_Silent_p.G712G|TRO_uc004dtw.2_Silent_p.G784G|TRO_uc004dtx.2_Silent_p.G564G	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	1181	62 X 10 AA approximate tandem repeats.|38; approximate.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						GCTTTAGTGGTGCTACCAGCC	0.522												
PAGE2	203569	broad.mit.edu	37	X	55117854	55117854	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:55117854A>G	uc004duf.1	+	4	337	c.283A>G	c.(283-285)ATG>GTG	p.M95V		NM_207339	NP_997222	Q7Z2X7	GGEE2_HUMAN	P antigen family, member 2	95										ovary(2)	2						GGAGGGTATTATGCCCACTTT	0.403												
USP51	158880	broad.mit.edu	37	X	55513438	55513438	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:55513438A>G	uc004dun.1	-	2	2014	c.1935T>C	c.(1933-1935)AAT>AAC	p.N645N	USP51_uc011moo.1_Silent_p.N349N	NM_201286	NP_958443	Q70EK9	UBP51_HUMAN	ubiquitin specific protease 51	645					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						ACTTATTCTCATTGGGCACAC	0.453												
KLF8	11279	broad.mit.edu	37	X	56296710	56296710	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:56296710A>G	uc004dur.2	+	5	1800	c.854A>G	c.(853-855)TAC>TGC	p.Y285C	KLF8_uc011mop.1_Intron|KLF8_uc010nkh.2_RNA	NM_007250	NP_009181	O95600	KLF8_HUMAN	Kruppel-like factor 8 isoform 1	285	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGCAAAGTGTACACCAAAAGC	0.438												
FAM123B	139285	broad.mit.edu	37	X	63411777	63411777	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:63411777C>T	uc004dvo.2	-	2	1663	c.1390G>A	c.(1390-1392)GCC>ACC	p.A464T		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	464					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						CTATTGGGGGCGGATTCTTGC	0.557												
FAM123B	139285	broad.mit.edu	37	X	63413026	63413026	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:63413026G>A	uc004dvo.2	-	2	414	c.141C>T	c.(139-141)TCC>TCT	p.S47S		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	47					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						TACCTGGGCCGGATGAGGATG	0.532												
ZC4H2	55906	broad.mit.edu	37	X	64140121	64140121	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:64140121T>C	uc004dvu.2	-	3	326	c.238A>G	c.(238-240)ATC>GTC	p.I80V	ZC4H2_uc004dvv.2_Missense_Mutation_p.I57V|ZC4H2_uc011mov.1_Missense_Mutation_p.I57V|ZC4H2_uc011mow.1_Missense_Mutation_p.I80V|ZC4H2_uc004dvw.1_Missense_Mutation_p.I80V	NM_018684	NP_061154	Q9NQZ6	ZC4H2_HUMAN	zinc finger, C4H2 domain containing	80	Potential.						metal ion binding|protein binding			ovary(1)	1						GATTGTTTGATAGTGTTTTCC	0.378												
AR	367	broad.mit.edu	37	X	66942766	66942766	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:66942766T>G	uc004dwu.1	+	7	3662	c.2547T>G	c.(2545-2547)AAT>AAG	p.N849K	AR_uc004dwv.1_Missense_Mutation_p.N317K	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	848	Ligand-binding.|Interaction with MYST2.				cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	AAAGAAAAAATCCCACATCCT	0.458									Androgen_Insensitivity_Syndrome			
OPHN1	4983	broad.mit.edu	37	X	67412815	67412815	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:67412815A>G	uc004dww.3	-	15	1516	c.1222T>C	c.(1222-1224)TAC>CAC	p.Y408H	OPHN1_uc011mpg.1_Missense_Mutation_p.Y408H	NM_002547	NP_002538	O60890	OPHN1_HUMAN	oligophrenin 1	408	Rho-GAP.				axon guidance|endocytosis|filopodium assembly|small GTPase mediated signal transduction|substrate-dependent cell migration, cell extension	axon|cell junction|cytosol|dendritic spine|synapse	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(2)	2						ACAGTGCGGTACAACCCTTCT	0.398												
KIF4A	24137	broad.mit.edu	37	X	69606471	69606471	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:69606471C>T	uc004dyg.2	+	19	2165	c.2038C>T	c.(2038-2040)CGT>TGT	p.R680C	KIF4A_uc010nkw.2_Missense_Mutation_p.R680C	NM_012310	NP_036442	O95239	KIF4A_HUMAN	kinesin family member 4	680	Potential.|Interaction with PRC1.				anterograde axon cargo transport|axon guidance|blood coagulation|organelle organization	chromosome|cytosol|midbody|nuclear matrix|spindle microtubule	ATP binding|DNA binding|microtubule motor activity|protein binding			ovary(4)	4						TTGTCAGGACCGTAAGAGGCA	0.373												
DLG3	1741	broad.mit.edu	37	X	69670589	69670589	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:69670589G>A	uc004dyi.1	+	6	1269	c.941G>A	c.(940-942)AGC>AAC	p.S314N	DLG3_uc004dyj.1_5'Flank	NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a	314					axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					AAGCCAGGCAGCCTCCACCTC	0.547												
ZMYM3	9203	broad.mit.edu	37	X	70471056	70471056	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:70471056T>C	uc004dzh.1	-	4	837	c.750A>G	c.(748-750)AAA>AAG	p.K250K	BCYRN1_uc011mpt.1_Intron|ZMYM3_uc004dzi.1_Silent_p.K250K|ZMYM3_uc004dzj.1_Silent_p.K250K|ZMYM3_uc011mpu.1_5'UTR|ZMYM3_uc004dzk.3_Silent_p.K250K|ZMYM3_uc004dzl.3_Silent_p.K250K|ZMYM3_uc004dzm.3_Silent_p.K250K	NM_201599	NP_963893	Q14202	ZMYM3_HUMAN	zinc finger protein 261	250					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Renal(35;0.156)					CAACCTCAGGTTTTGGAGGTT	0.527												
NHSL2	340527	broad.mit.edu	37	X	71359174	71359174	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:71359174A>G	uc011mqa.1	+	6	1776	c.1776A>G	c.(1774-1776)CTA>CTG	p.L592L	NHSL2_uc004eak.1_Silent_p.L226L|NHSL2_uc010nli.2_Silent_p.L361L	NM_001013627	NP_001013649	Q5HYW2	NHSL2_HUMAN	NHS-like 2	592											0	Renal(35;0.156)					GGTCAGCACTACCCAAGGACC	0.557												
ERCC6L	54821	broad.mit.edu	37	X	71425175	71425175	+	Missense_Mutation	SNP	C	C	T	rs78660817		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:71425175C>T	uc004eaq.1	-	2	3539	c.3442G>A	c.(3442-3444)GGA>AGA	p.G1148R	PIN4_uc004eao.1_Intron|ERCC6L_uc004eap.1_Missense_Mutation_p.G1025R	NM_017669	NP_060139	Q2NKX8	ERC6L_HUMAN	excision repair protein ERCC6-like	1148					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol	ATP binding|DNA binding|helicase activity|protein binding			ovary(3)	3	Renal(35;0.156)					AGTGTTTCTCCGGAAGGATCC	0.502												
ERCC6L	54821	broad.mit.edu	37	X	71428266	71428266	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:71428266A>G	uc004eaq.1	-	2	448	c.351T>C	c.(349-351)GGT>GGC	p.G117G	PIN4_uc004eao.1_Intron|ERCC6L_uc004eap.1_5'UTR	NM_017669	NP_060139	Q2NKX8	ERC6L_HUMAN	excision repair protein ERCC6-like	117	Helicase ATP-binding.				cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol	ATP binding|DNA binding|helicase activity|protein binding			ovary(3)	3	Renal(35;0.156)					CCAATATACCACCTTTTCTTC	0.433												
PHKA1	5255	broad.mit.edu	37	X	71846871	71846871	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:71846871A>G	uc004eax.3	-	17	2044	c.1743T>C	c.(1741-1743)AGT>AGC	p.S581S	PHKA1_uc004eay.3_Silent_p.S581S|PHKA1_uc011mqi.1_Silent_p.S581S	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	581					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					CTGCCAGGATACTTGAATTCA	0.363												
KIAA2022	340533	broad.mit.edu	37	X	73961910	73961910	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:73961910T>C	uc004eby.2	-	3	3099	c.2482A>G	c.(2482-2484)ACT>GCT	p.T828A		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	828					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GAGATACTAGTGTTATTTGAC	0.433												
ZDHHC15	158866	broad.mit.edu	37	X	74670727	74670727	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:74670727A>G	uc004ecg.2	-	4	767	c.289T>C	c.(289-291)TAT>CAT	p.Y97H	ZDHHC15_uc004ech.2_Missense_Mutation_p.Y88H|ZDHHC15_uc011mqo.1_RNA|ZDHHC15_uc004eci.2_Missense_Mutation_p.Y88H	NM_144969	NP_659406	Q96MV8	ZDH15_HUMAN	zinc finger, DHHC-type containing 15 isoform 1	97						integral to membrane	zinc ion binding			ovary(2)	2						TCATTTTCATAGCGCTCCTTG	0.398												
PGAM4	441531	broad.mit.edu	37	X	77224557	77224557	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:77224557A>G	uc004ecy.1	-	1	579	c.579T>C	c.(577-579)ATT>ATC	p.I193I	ATP7A_uc004ecw.2_Intron|ATP7A_uc004ecx.3_Intron	NM_001029891	NP_001025062	Q8N0Y7	PGAM4_HUMAN	bisphosphoglycerate mutase 4	193					glycolysis		2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity|phosphoglycerate mutase activity				0						CATGCTTGGCAATGCCCTGGA	0.512												
P2RY10	27334	broad.mit.edu	37	X	78216198	78216198	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:78216198C>T	uc004ede.2	+	4	550	c.181C>T	c.(181-183)CGC>TGC	p.R61C	P2RY10_uc004edf.2_Missense_Mutation_p.R61C	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	61	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						GGTTCTGTGCCGCTTCATCAG	0.418												
POU3F4	5456	broad.mit.edu	37	X	82764004	82764004	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:82764004T>C	uc004eeg.2	+	1	736	c.672T>C	c.(670-672)GGT>GGC	p.G224G		NM_000307	NP_000298	P49335	PO3F4_HUMAN	POU domain, class 3, transcription factor 4	224	POU-specific.				sensory perception of sound	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						CACTGTATGGTAACGTGTTCT	0.522												
HDX	139324	broad.mit.edu	37	X	83723662	83723662	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:83723662T>C	uc004eek.1	-	3	1178	c.1069A>G	c.(1069-1071)ATT>GTT	p.I357V	HDX_uc011mqv.1_Missense_Mutation_p.I357V|HDX_uc004eel.1_Missense_Mutation_p.I299V	NM_144657	NP_653258	Q7Z353	HDX_HUMAN	highly divergent homeobox	357						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)	2						ATATCTCTAATATTCACCATT	0.393												
SATL1	340562	broad.mit.edu	37	X	84362428	84362428	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:84362428A>G	uc011mqx.1	-	1	1547	c.1547T>C	c.(1546-1548)GTG>GCG	p.V516A	SATL1_uc004een.2_Missense_Mutation_p.V516A	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	329	Gln-rich.						N-acetyltransferase activity			breast(2)	2						CATTTGGCTCACACTTGGTTG	0.517												
CHM	1121	broad.mit.edu	37	X	85119781	85119781	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:85119781G>A	uc004eet.2	-	15	1846	c.1816C>T	c.(1816-1818)CCC>TCC	p.P606S	CHM_uc011mqz.1_Missense_Mutation_p.P458S	NM_000390	NP_000381	P24386	RAE1_HUMAN	choroideremia isoform a	606					intracellular protein transport|protein geranylgeranylation|response to stimulus|visual perception	Rab-protein geranylgeranyltransferase complex	GTPase activator activity|Rab geranylgeranyltransferase activity			ovary(1)	1		all_lung(315;5.41e-06)				GGTGGAGGGGGACAGAAATCT	0.438												
DACH2	117154	broad.mit.edu	37	X	85403701	85403701	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:85403701A>G	uc004eew.2	+	1	247	c.77A>G	c.(76-78)GAA>GGA	p.E26G	DACH2_uc004eex.2_Missense_Mutation_p.E26G|DACH2_uc010nmq.2_5'UTR	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	26					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						TTCCGGGCCGAACCCCTGTAC	0.587												
SRPX2	27286	broad.mit.edu	37	X	99920261	99920261	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:99920261G>A	uc004egb.2	+	6	1034	c.554G>A	c.(553-555)CGC>CAC	p.R185H		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	185	HYR.				angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						CCCAAGATCCGCTGTCCCCAC	0.527												
GLA	2717	broad.mit.edu	37	X	100653514	100653514	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:100653514T>C	uc004ehl.1	-	6	953	c.843A>G	c.(841-843)GTA>GTG	p.V281V		NM_000169	NP_000160	P06280	AGAL_HUMAN	alpha-galactosidase A precursor	281					glycoside catabolic process|glycosphingolipid catabolic process|glycosylceramide catabolic process|negative regulation of nitric oxide biosynthetic process|negative regulation of nitric-oxide synthase activity|oligosaccharide metabolic process	extracellular region|Golgi apparatus|lysosome	cation binding|protein homodimerization activity|raffinose alpha-galactosidase activity|receptor binding				0					Agalsidase beta(DB00103)	CCATCTGAGTTACTTGCTGAT	0.438												
TCEAL2	140597	broad.mit.edu	37	X	101382092	101382092	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:101382092G>T	uc004eip.2	+	3	509	c.290G>T	c.(289-291)GGG>GTG	p.G97V		NM_080390	NP_525129	Q9H3H9	TCAL2_HUMAN	transcription elongation factor A (SII)-like 2	97					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						ccagagagagggggaagggca	0.119												
NXF3	56000	broad.mit.edu	37	X	102339744	102339744	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:102339744A>G	uc004eju.2	-	2	167	c.96T>C	c.(94-96)AGT>AGC	p.S32S	NXF3_uc010noi.1_5'Flank|NXF3_uc011mrw.1_Silent_p.S32S|NXF3_uc011mrx.1_Intron	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	32						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						GTTCAGACCTACTGCTAAATC	0.428												
RAB40A	142684	broad.mit.edu	37	X	102754895	102754895	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:102754895T>G	uc004ekk.2	-	3	1132	c.790A>C	c.(790-792)AGC>CGC	p.S264R		NM_080879	NP_543155	Q8WXH6	RB40A_HUMAN	RAB40A, member RAS oncogene family	264					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0						TTGGGTGGGCTCTGGGGTGGG	0.527												
SERPINA7	6906	broad.mit.edu	37	X	105280958	105280958	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:105280958T>C	uc004eme.1	-	1	108	c.92A>G	c.(91-93)CAT>CGT	p.H31R	SERPINA7_uc010npd.2_Missense_Mutation_p.H31R|SERPINA7_uc010npe.1_Missense_Mutation_p.H31R	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	31				CH -> DS (in Ref. 7; AA sequence).	regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	TTGGGATGAATGGCAGGCTGT	0.463												
VSIG1	340547	broad.mit.edu	37	X	107310235	107310235	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:107310235G>A	uc004eno.2	+	3	444	c.283G>A	c.(283-285)GAT>AAT	p.D95N	VSIG1_uc011msk.1_Missense_Mutation_p.D131N	NM_182607	NP_872413	Q86XK7	VSIG1_HUMAN	V-set and immunoglobulin domain containing 1	95	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						AGGGTCCAACGATCCAGGTAA	0.433												
ATG4A	115201	broad.mit.edu	37	X	107374535	107374535	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:107374535G>A	uc004enr.2	+	4	362	c.239G>A	c.(238-240)CGC>CAC	p.R80H	ATG4A_uc004ent.2_Missense_Mutation_p.R80H|ATG4A_uc004ens.2_5'UTR|ATG4A_uc011msl.1_5'UTR|ATG4A_uc010npi.2_RNA|ATG4A_uc004enu.2_5'UTR	NM_052936	NP_443168	Q8WYN0	ATG4A_HUMAN	autophagy-related cysteine endopeptidase 2	80					autophagy|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity			pancreas(1)	1						TGTATGCTACGCTGTGGACAG	0.458												
ATG4A	115201	broad.mit.edu	37	X	107381067	107381067	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:107381067A>G	uc004enr.2	+	8	704	c.581A>G	c.(580-582)GAC>GGC	p.D194G	ATG4A_uc004ent.2_Missense_Mutation_p.D194G|ATG4A_uc004ens.2_Missense_Mutation_p.D110G|ATG4A_uc011msl.1_Missense_Mutation_p.D110G|ATG4A_uc010npi.2_RNA|ATG4A_uc004enu.2_Missense_Mutation_p.D110G	NM_052936	NP_443168	Q8WYN0	ATG4A_HUMAN	autophagy-related cysteine endopeptidase 2	194					autophagy|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity			pancreas(1)	1						TTGAGTGCTGACACAGCTGGT	0.473												
COL4A6	1288	broad.mit.edu	37	X	107408254	107408254	+	Missense_Mutation	SNP	C	C	T	rs113329155	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:107408254C>T	uc004enw.3	-	39	3929	c.3826G>A	c.(3826-3828)GCT>ACT	p.A1276T	COL4A6_uc004env.3_Missense_Mutation_p.A1275T|COL4A6_uc011msn.1_Missense_Mutation_p.A1251T|COL4A6_uc010npk.2_Missense_Mutation_p.A1251T|COL4A6_uc010npj.2_5'Flank	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1276	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						GGGGGTCCAGCGGGGCCTGGG	0.627									Alport_syndrome_with_Diffuse_Leiomyomatosis			
NXT2	55916	broad.mit.edu	37	X	108785800	108785800	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:108785800A>G	uc004eof.1	+	4	456	c.312A>G	c.(310-312)GGA>GGG	p.G104G	NXT2_uc004eoe.1_Silent_p.G159G|NXT2_uc004eog.1_Silent_p.G76G	NM_018698	NP_061168	Q9NPJ8	NXT2_HUMAN	nuclear transport factor 2-like export factor 2	104	NTF2.				mRNA transport|protein transport	cytoplasm|nucleus				ovary(1)	1						AGTTTGATGGAAACAAACAAC	0.408												
ZCCHC16	340595	broad.mit.edu	37	X	111698039	111698039	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:111698039A>G	uc004epo.1	+	3	524	c.83A>G	c.(82-84)CAA>CGA	p.Q28R		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	28							nucleic acid binding|zinc ion binding			ovary(1)	1						CTGCGGCTTCAAATGCAGCAT	0.502												
LUZP4	51213	broad.mit.edu	37	X	114540914	114540914	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:114540914C>T	uc004eqa.2	+	4	521	c.487C>T	c.(487-489)CGA>TGA	p.R163*	LUZP4_uc004eqb.2_Nonsense_Mutation_p.R81*	NM_016383	NP_057467	Q9P127	LUZP4_HUMAN	leucine zipper protein 4	163						nucleus				ovary(2)	2						TGAGCGATCCCGAAACCACTT	0.468												
WDR44	54521	broad.mit.edu	37	X	117527127	117527127	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:117527127C>G	uc004eqn.2	+	4	1144	c.719C>G	c.(718-720)ACT>AGT	p.T240S	WDR44_uc004eqo.2_Missense_Mutation_p.T240S|WDR44_uc011mtr.1_Missense_Mutation_p.T215S|WDR44_uc010nqi.2_5'UTR	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	240	Pro-rich.					cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5						CCTCCTCCAACTAATTTCCCA	0.512												
DOCK11	139818	broad.mit.edu	37	X	117770340	117770340	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:117770340A>G	uc004eqp.2	+	36	3981	c.3918A>G	c.(3916-3918)TCA>TCG	p.S1306S	DOCK11_uc004eqq.2_Silent_p.S1085S	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1306					blood coagulation	cytosol	GTP binding			ovary(3)	3						ATAAAGTATCACCTCAGGAGC	0.239												
IL13RA1	3597	broad.mit.edu	37	X	117925753	117925753	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:117925753A>G	uc004eqs.2	+	11	1263	c.1220A>G	c.(1219-1221)AAG>AGG	p.K407R	IL13RA1_uc004eqt.1_Intron	NM_001560	NP_001551	P78552	I13R1_HUMAN	interleukin 13 receptor, alpha 1 precursor	407	Cytoplasmic (Potential).					interleukin-13 receptor complex	cytokine receptor activity				0						ATCTATGAGAAGCAAACCAAG	0.408												
PGRMC1	10857	broad.mit.edu	37	X	118374362	118374362	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:118374362A>G	uc004erb.2	+	2	535	c.419A>G	c.(418-420)GAT>GGT	p.D140G	PGRMC1_uc011mts.1_Intron	NM_006667	NP_006658	O00264	PGRC1_HUMAN	progesterone receptor membrane component 1	140	Cytochrome b5 heme-binding.|Cytoplasmic (Potential).					cell surface|endoplasmic reticulum membrane|integral to membrane|microsome|nucleolus	heme binding|protein binding|receptor activity|steroid binding				0						GATGAGTACGATGACCTTTCT	0.483												
UPF3B	65109	broad.mit.edu	37	X	118979166	118979166	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:118979166T>C	uc004erz.1	-	4	541	c.464A>G	c.(463-465)GAT>GGT	p.D155G	UPF3B_uc004esa.1_Missense_Mutation_p.D155G	NM_080632	NP_542199	Q9BZI7	REN3B_HUMAN	UPF3 regulator of nonsense transcripts homolog B	155	Sufficient for association with EJC core.|Necessary for interaction with UPF2.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation|termination of RNA polymerase II transcription	cytosol|exon-exon junction complex|nucleoplasm	mRNA binding|nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(2)|kidney(1)	3						TGTACCATCATCGATAGTCCC	0.328												
NDUFA1	4694	broad.mit.edu	37	X	119007297	119007297	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:119007297T>C	uc004esc.3	+	2	274	c.133T>C	c.(133-135)TGG>CGG	p.W45R	RNF113A_uc004esb.2_5'Flank	NM_004541	NP_004532	O15239	NDUA1_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	45					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			large_intestine(1)	1					NADH(DB00157)	TGGGTATCACTGGAGTCTGAT	0.403												
RHOXF1	158800	broad.mit.edu	37	X	119249597	119249597	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:119249597C>T	uc004esk.1	-	1	251	c.176G>A	c.(175-177)GGC>GAC	p.G59D	uc004esi.1_Intron	NM_139282	NP_644811	Q8NHV9	RHXF1_HUMAN	Rhox homeobox family, member 1	59					gamete generation|multicellular organismal development|steroid hormone receptor signaling pathway	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCGGTTCATGCCGTTCTCGTG	0.682												
THOC2	57187	broad.mit.edu	37	X	122766892	122766892	+	Splice_Site	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:122766892C>A	uc004etu.2	-	21	2169	c.2137_splice	c.e21-1	p.G713_splice	THOC2_uc011muh.1_Splice_Site_p.G638_splice	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2						intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						AATAACCACCCTGCACAAGGG	0.363												
SH2D1A	4068	broad.mit.edu	37	X	123504039	123504039	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:123504039T>C	uc004euf.3	+	3	560	c.215T>C	c.(214-216)GTA>GCA	p.V72A	SH2D1A_uc004euh.3_Missense_Mutation_p.V72A|SH2D1A_uc004eug.3_Intron|SH2D1A_uc010nqw.2_Intron|SH2D1A_uc004eui.3_RNA|SH2D1A_uc010nqx.2_Intron	NM_002351	NP_002342	O60880	SH21A_HUMAN	SH2 domain protein 1A isoform 1	72	SH2.				cell-cell signaling|cellular defense response	cytoplasm	SH3/SH2 adaptor activity				0						GCACCTGGGGTACATAAAAGA	0.363									X-linked_Lymphoproliferative_syndrome			
ODZ1	10178	broad.mit.edu	37	X	123517933	123517933	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:123517933T>C	uc004euj.2	-	29	6891	c.6827A>G	c.(6826-6828)AAC>AGC	p.N2276S	ODZ1_uc011muj.1_Missense_Mutation_p.N2282S|ODZ1_uc010nqy.2_Missense_Mutation_p.N2283S	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2276	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TCTTATGGGGTTGGTAAGGTC	0.473												
ODZ1	10178	broad.mit.edu	37	X	123657295	123657295	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:123657295T>C	uc004euj.2	-	17	3016	c.2952A>G	c.(2950-2952)CCA>CCG	p.P984P	ODZ1_uc011muj.1_Silent_p.P983P|ODZ1_uc010nqy.2_Silent_p.P984P	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	984	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CAATAGGGTTTGGGCTGATAA	0.483												
UTP14A	10813	broad.mit.edu	37	X	129053461	129053461	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:129053461A>G	uc004euz.2	+	8	776	c.748A>G	c.(748-750)AAA>GAA	p.K250E	UTP14A_uc011mup.1_Missense_Mutation_p.K198E|UTP14A_uc011muq.1_Missense_Mutation_p.K196E|UTP14A_uc004eva.1_5'Flank	NM_006649	NP_006640	Q9BVJ6	UT14A_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	250	Potential.				rRNA processing	nucleolus|small-subunit processome	protein binding			ovary(2)	2						AATCAAAAGTAAAAAGTAAGG	0.473												
BCORL1	63035	broad.mit.edu	37	X	129189907	129189907	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:129189907G>A	uc004evb.1	+	13	5046	c.4932G>A	c.(4930-4932)CCG>CCA	p.P1644P	BCORL1_uc004evc.1_Silent_p.P480P	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	1644					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						CCCGGTTCCCGCACTTTGAAA	0.582												
ELF4	2000	broad.mit.edu	37	X	129205039	129205039	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:129205039T>C	uc004evd.3	-	7	1170	c.785A>G	c.(784-786)TAT>TGT	p.Y262C	ELF4_uc004eve.3_Missense_Mutation_p.Y262C	NM_001421	NP_001412	Q99607	ELF4_HUMAN	E74-like factor 4	262	ETS.				natural killer cell proliferation|NK T cell proliferation|positive regulation of transcription from RNA polymerase II promoter	PML body	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CATTGTCTCATAGTTCATGTC	0.527			T	ERG	AML							
RBMX2	51634	broad.mit.edu	37	X	129546413	129546413	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:129546413C>T	uc004evt.2	+	6	624	c.560C>T	c.(559-561)TCG>TTG	p.S187L		NM_016024	NP_057108	Q9Y388	RBMX2_HUMAN	RNA binding motif protein, X-linked 2	187	Lys-rich.						nucleotide binding|RNA binding			breast(3)|ovary(1)	4						CCATCCTCTTCGTCACCCAGA	0.433												
RAP2C	57826	broad.mit.edu	37	X	131348328	131348328	+	Nonsense_Mutation	SNP	A	A	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:131348328A>T	uc004ewp.2	-	3	1204	c.420T>A	c.(418-420)TGT>TGA	p.C140*	RAP2C_uc004ewo.2_Nonsense_Mutation_p.C74*|RAP2C_uc010nrk.2_RNA|RAP2C_uc004ewq.3_Nonsense_Mutation_p.C140*	NM_021183	NP_067006	Q9Y3L5	RAP2C_HUMAN	RAP2C, member of RAS oncogene family precursor	140					negative regulation of cell migration|positive regulation of protein autophosphorylation|Rap protein signal transduction|regulation of protein tyrosine kinase activity	recycling endosome membrane	GTP binding|GTPase activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CCATGAAAGGACAGCCCCATT	0.443												
CCDC160	347475	broad.mit.edu	37	X	133379180	133379180	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:133379180A>G	uc011mvj.1	+	2	671	c.350A>G	c.(349-351)AAC>AGC	p.N117S		NM_001101357	NP_001094827	A6NGH7	CC160_HUMAN	coiled-coil domain containing 160	117										skin(1)	1						ACAGAAGATAACTCTACCTGC	0.343												
ARHGEF6	9459	broad.mit.edu	37	X	135825784	135825784	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:135825784G>A	uc004fab.2	-	5	1083	c.621C>T	c.(619-621)GGC>GGT	p.G207G	ARHGEF6_uc011mwd.1_Silent_p.G53G|ARHGEF6_uc011mwe.1_Silent_p.G53G	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	207	SH3.				apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					TGGGGAACCAGCCTGTTCTCC	0.408												
ATP11C	286410	broad.mit.edu	37	X	138878614	138878614	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:138878614T>C	uc004faz.2	-	12	1132	c.1033A>G	c.(1033-1035)ACC>GCC	p.T345A	ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Missense_Mutation_p.T345A	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	345	Extracellular (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					AGGAAGTCGGTGAACATTTTT	0.313												
MAGEC3	139081	broad.mit.edu	37	X	140983059	140983059	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:140983059G>A	uc011mwp.1	+	5	914	c.914G>A	c.(913-915)TGG>TAG	p.W305*	MAGEC3_uc004fbs.2_5'UTR|MAGEC3_uc010nsj.2_5'Flank	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	305	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGTCAGCCCTGGTCAGCCTTG	0.458												
SPANXN3	139067	broad.mit.edu	37	X	142596675	142596675	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:142596675T>C	uc004fbw.2	-	2	483	c.395A>G	c.(394-396)GAA>GGA	p.E132G		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	132										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TGAAGATCCTTCAGATAAGCC	0.443												
SLITRK2	84631	broad.mit.edu	37	X	144903977	144903977	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:144903977A>G	uc004fcd.2	+	5	1024	c.34A>G	c.(34-36)ACC>GCC	p.T12A	SLITRK2_uc010nsp.2_Missense_Mutation_p.T12A|SLITRK2_uc010nso.2_Missense_Mutation_p.T12A|SLITRK2_uc011mwq.1_Missense_Mutation_p.T12A|SLITRK2_uc011mwr.1_Missense_Mutation_p.T12A|SLITRK2_uc011mws.1_Missense_Mutation_p.T12A|SLITRK2_uc004fcg.2_Missense_Mutation_p.T12A|SLITRK2_uc011mwt.1_Missense_Mutation_p.T12A	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	12						integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					CAGTGTGTTAACCGTGGCCGG	0.502												
FMR1NB	158521	broad.mit.edu	37	X	147106430	147106430	+	Silent	SNP	G	G	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:147106430G>T	uc004fcm.2	+	5	752	c.678G>T	c.(676-678)ACG>ACT	p.T226T		NM_152578	NP_689791	Q8N0W7	FMR1N_HUMAN	fragile X mental retardation 1 neighbor	226	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GAGTTGTAACGGGTTTGAAGA	0.413												
AFF2	2334	broad.mit.edu	37	X	147924950	147924950	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:147924950T>C	uc004fcp.2	+	7	1734	c.1255T>C	c.(1255-1257)TTC>CTC	p.F419L	AFF2_uc004fco.2_Intron|AFF2_uc004fcq.2_Intron|AFF2_uc004fcr.2_Intron|AFF2_uc011mxb.1_Intron|AFF2_uc004fcs.2_Missense_Mutation_p.F386L|AFF2_uc011mxc.1_Missense_Mutation_p.F60L	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	419					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					GTCAGTGTCTTTCAAATCGTG	0.398												
AFF2	2334	broad.mit.edu	37	X	148037624	148037624	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:148037624A>G	uc004fcp.2	+	11	2528	c.2049A>G	c.(2047-2049)GAA>GAG	p.E683E	AFF2_uc004fcq.2_Silent_p.E673E|AFF2_uc004fcr.2_Silent_p.E644E|AFF2_uc011mxb.1_Silent_p.E648E|AFF2_uc004fcs.2_Silent_p.E650E|AFF2_uc011mxc.1_Silent_p.E324E	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	683					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CTAGGAAAGAACCAAGACCTA	0.493												
PASD1	139135	broad.mit.edu	37	X	150844591	150844591	+	Silent	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:150844591A>G	uc004fev.3	+	16	2630	c.2298A>G	c.(2296-2298)CAA>CAG	p.Q766Q		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	766						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CTGCAGAGCAACGTGACTCAA	0.572												
PRRG3	79057	broad.mit.edu	37	X	150869406	150869406	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:150869406G>A	uc004few.1	+	4	987	c.597G>A	c.(595-597)GCG>GCA	p.A199A		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	199	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGGTGACTGCGCCCCAAGAGA	0.622												
PRRG3	79057	broad.mit.edu	37	X	150869501	150869501	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:150869501A>G	uc004few.1	+	4	1082	c.692A>G	c.(691-693)AAG>AGG	p.K231R		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	231	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGCGCTGACAAGTAGTGGGAC	0.537												
GABRQ	55879	broad.mit.edu	37	X	151806730	151806730	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:151806730A>G	uc004ffp.1	+	1	94	c.74A>G	c.(73-75)TAC>TGC	p.Y25C		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	25	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GAGGGCAACTACCCCAGTCCC	0.642												
ATP2B3	492	broad.mit.edu	37	X	152813387	152813387	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:152813387C>T	uc004fht.1	+	7	1179	c.1053C>T	c.(1051-1053)AAC>AAT	p.N351N	ATP2B3_uc004fhs.1_Silent_p.N351N	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	351	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AGAAAGCCAACGCACCCAAAA	0.597												
PLXNB3	5365	broad.mit.edu	37	X	153043053	153043053	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:153043053C>A	uc004fii.2	+	31	5345	c.5171C>A	c.(5170-5172)GCC>GAC	p.A1724D	PLXNB3_uc010nuk.2_Missense_Mutation_p.A1747D|PLXNB3_uc011mzd.1_Missense_Mutation_p.A1363D|SRPK3_uc004fik.2_5'UTR	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	1724	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					ATCCCCATCGCCGTCAAGTAC	0.592												
HCFC1	3054	broad.mit.edu	37	X	153225269	153225269	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:153225269G>A	uc004fjp.2	-	8	1956	c.1428C>T	c.(1426-1428)ACC>ACT	p.T476T		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	476					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TCCTGGCTGCGGTGGGCACAG	0.672												
TKTL1	8277	broad.mit.edu	37	X	153557991	153557991	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:153557991A>G	uc004fkg.2	+	13	1930	c.1744A>G	c.(1744-1746)AGT>GGT	p.S582G	TKTL1_uc011mzl.1_Missense_Mutation_p.S576G|TKTL1_uc011mzm.1_Missense_Mutation_p.S378G|TKTL1_uc004fkh.2_Missense_Mutation_p.S526G	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	582					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GTATGGAATTAGTGCCAGACA	0.468												
FLNA	2316	broad.mit.edu	37	X	153578115	153578115	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:153578115A>G	uc004fkk.2	-	46	7703	c.7454T>C	c.(7453-7455)GTC>GCC	p.V2485A	FLNA_uc004fki.2_Missense_Mutation_p.V525A|FLNA_uc011mzn.1_Missense_Mutation_p.V618A|FLNA_uc010nuu.1_Missense_Mutation_p.V2477A	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	2485	Filamin 23.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGTATAGGTGACGCGGTAGCC	0.612											OREG0003592	type=REGULATORY REGION|Gene=FLNA|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay
FLNA	2316	broad.mit.edu	37	X	153588878	153588878	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:153588878G>A	uc004fkk.2	-	22	3534	c.3285C>T	c.(3283-3285)GCC>GCT	p.A1095A	FLNA_uc011mzn.1_5'Flank|FLNA_uc010nuu.1_Silent_p.A1095A	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	1095	Filamin 9.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CACCTGTGCCGGCGCCCTTGG	0.682											OREG0003593	type=REGULATORY REGION|Gene=FLNA|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay
FLNA	2316	broad.mit.edu	37	X	153593012	153593012	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:153593012T>C	uc004fkk.2	-	13	2153	c.1904A>G	c.(1903-1905)TAC>TGC	p.Y635C	FLNA_uc010nuu.1_Missense_Mutation_p.Y635C	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	635	Filamin 4.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CTGCGGCCAGTAGCGCACATC	0.622												
FLNA	2316	broad.mit.edu	37	X	153594737	153594737	+	Silent	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:153594737G>A	uc004fkk.2	-	8	1416	c.1167C>T	c.(1165-1167)CCC>CCT	p.P389P	FLNA_uc010nuu.1_Silent_p.P389P	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	389	Filamin 2.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GCTCCAGGCCGGGACCTTGGG	0.592												
FAM50A	9130	broad.mit.edu	37	X	153674214	153674214	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:153674214G>A	uc004fll.3	+	3	349	c.251G>A	c.(250-252)CGG>CAG	p.R84Q		NM_004699	NP_004690	Q14320	FA50A_HUMAN	XAP-5 protein	84					spermatogenesis	nucleus				ovary(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GTGAAGGAGCGGGAGAAGCAG	0.607												
PLXNA3	55558	broad.mit.edu	37	X	153688930	153688930	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:153688930A>G	uc004flm.2	+	2	580	c.407A>G	c.(406-408)CAC>CGC	p.H136R		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	136	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GAGCCGCACCACCGCAAGGAG	0.667												
GAB3	139716	broad.mit.edu	37	X	153906491	153906491	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:153906491T>C	uc004fmj.1	-	10	1773	c.1725A>G	c.(1723-1725)AAA>AAG	p.K575K	GAB3_uc004fmk.1_Silent_p.K576K|GAB3_uc010nve.1_Silent_p.K537K|GAB3_uc004fml.1_Silent_p.K195K	NM_080612	NP_542179	Q8WWW8	GAB3_HUMAN	Gab3 protein isoform 2	575										ovary(1)	1	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TCCACTCCTGTTTTGTGCTCT	0.453												
MPP1	4354	broad.mit.edu	37	X	154007457	154007457	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:154007457A>G	uc004fmp.1	-	12	1511	c.1396T>C	c.(1396-1398)TAC>CAC	p.Y466H	MPP1_uc010nvg.1_Missense_Mutation_p.Y446H|MPP1_uc011mzv.1_Missense_Mutation_p.Y436H|MPP1_uc004fmq.1_Missense_Mutation_p.Y420H|MPP1_uc011mzw.1_Missense_Mutation_p.Y449H	NM_002436	NP_002427	Q00013	EM55_HUMAN	palmitoylated membrane protein 1	466	Interaction with MPP5.				regulation of neutrophil chemotaxis|signal transduction	integral to plasma membrane|membrane fraction|stereocilium	guanylate kinase activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CAAGCTTAGTAAACCCAGGAG	0.488												
F8	2157	broad.mit.edu	37	X	154130394	154130394	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:154130394C>T	uc004fmt.2	-	19	6218	c.6047G>A	c.(6046-6048)CGG>CAG	p.R2016Q	F8_uc010nvi.1_Intron	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	2016	F5/8 type A 3.|Plastocyanin-like 6.		R -> P (in HEMA; severe familial).|R -> W (in HEMA; severe/moderate/mild).		acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GCATTCCACCCGCCAAATTCC	0.423												
F8	2157	broad.mit.edu	37	X	154158195	154158195	+	Silent	SNP	T	T	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:154158195T>C	uc004fmt.2	-	14	4041	c.3870A>G	c.(3868-3870)AAA>AAG	p.K1290K		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1290	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	CTTCCTCCCCTTTTTTTGAGA	0.383												
TMLHE	55217	broad.mit.edu	37	X	154741369	154741369	+	Silent	SNP	C	C	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:154741369C>T	uc004fnn.2	-	5	889	c.723G>A	c.(721-723)CGG>CGA	p.R241R	TMLHE_uc004fno.2_Silent_p.R241R|TMLHE_uc004fnp.3_Silent_p.R241R	NM_018196	NP_060666	Q9NVH6	TMLH_HUMAN	trimethyllysine hydroxylase, epsilon	241					carnitine biosynthetic process	mitochondrial matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|trimethyllysine dioxygenase activity			ovary(1)	1	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Succinic acid(DB00139)|Vitamin C(DB00126)	TGTCAGTGTGCCGATCCAGAG	0.413												
SPRY3	10251	broad.mit.edu	37	X	155003541	155003541	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:155003541C>A	uc004fnq.1	+	2	462	c.8C>A	c.(7-9)GCT>GAT	p.A3D	SPRY3_uc010nvl.1_Missense_Mutation_p.A3D	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	3					multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					AAAATGGATGCTGCGGTGACA	0.463												
TAS1R1	80835	broad.mit.edu	37	1	6636476	6636476	+	Splice_Site	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:6636475_6636475CT>C	uc001ant.3	+	4	1357	c.1261_splice	c.e4-1	p.L421_splice	TAS1R1_uc001anu.3_Splice_Site_p.L167_splice|TAS1R1_uc021ofp.1_Intron	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	Homo sapiens taste receptor, type 1, member 1 (TAS1R1), transcript variant 2, mRNA.	421					sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			NS(2)|central_nervous_system(1)|endometrium(2)|large_intestine(7)|lung(13)|ovary(1)|skin(1)|urinary_tract(2)	29	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		TTTCTTTCAGCTTTTGGAGCA	0.512												
TNFRSF9	3604	broad.mit.edu	37	1	7998254	7998254	+	Splice_Site	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:7998253_7998253CT>C	uc001aot.3	-	5	607	c.346_splice	c.e5+1	p.G116_splice		NM_001561	NP_001552	Q07011	TNR9_HUMAN	Homo sapiens tumor necrosis factor receptor superfamily, member 9 (TNFRSF9), mRNA.	116					induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity	p.G116S(1)		NS(1)|endometrium(2)|kidney(1)|large_intestine(5)|lung(5)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	19	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		GCAAACGTACCTTTTTTTGTC	0.408												
TCEA3	6920	broad.mit.edu	37	1	23710913	23710914	+	Splice_Site	DEL	GA	GA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:23710912_23710913TGA>T	uc021oig.1	-	10	1102	c.967_splice	c.e10-1	p.V323_splice	TCEA3_uc009vqm.2_Intron	NM_003196	NP_003187	O75764	TCEA3_HUMAN	Homo sapiens transcription elongation factor A (SII), 3 (TCEA3), mRNA.	323					regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	nucleus	DNA binding|translation elongation factor activity|zinc ion binding			endometrium(1)|kidney(1)|large_intestine(1)|lung(3)|urinary_tract(1)	7		Colorectal(325;3.46e-05)|Lung NSC(340;4.16e-05)|all_lung(284;6.68e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.0054)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.6e-25)|Colorectal(126;8.32e-08)|COAD - Colon adenocarcinoma(152;4.29e-06)|GBM - Glioblastoma multiforme(114;9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00424)|STAD - Stomach adenocarcinoma(196;0.0145)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0963)|LUSC - Lung squamous cell carcinoma(448;0.198)		TGTCTGCACCTGAGAGAGAGAA	0.495												
MYOM3	127294	broad.mit.edu	37	1	24411132	24411132	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:24411131_24411131TA>T	uc001bin.4	-	16	1962	c.1799_splice	c.e16-1	p.A600_splice	MYOM3_uc001bim.4_Splice_Site_p.A257_splice|MYOM3_uc001bio.3_Splice_Site_p.A600_splice|MYOM3_uc001bip.1_Intron	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	Homo sapiens myomesin family, member 3 (MYOM3), mRNA.	600										NS(2)|breast(2)|central_nervous_system(1)|endometrium(5)|kidney(6)|large_intestine(3)|lung(40)|ovary(2)|prostate(1)|skin(4)|urinary_tract(2)	68		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GGAGGGTAGCTAAAAAATAGA	0.542												
PRDX1	5052	broad.mit.edu	37	1	45981482	45981482	+	Splice_Site	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:45981481_45981481TG>T	uc001coc.3	-	3	422	c.107_splice	c.e3-1	p.G36_splice	PRDX1_uc001cob.3_Splice_Site_p.G36_splice|PRDX1_uc001coa.3_Splice_Site_p.G36_splice|PRDX1_uc021omw.1_Splice_Site_p.G36_splice	NM_181696	NP_859048	Q06830	PRDX1_HUMAN	Homo sapiens peroxiredoxin 1 (PRDX1), transcript variant 2, mRNA.	36	Thioredoxin.				cell proliferation|cell redox homeostasis|hydrogen peroxide catabolic process|skeletal system development	melanosome|mitochondrion|nucleus	protein binding|thioredoxin peroxidase activity			breast(1)|endometrium(3)|kidney(1)|large_intestine(1)|lung(5)|skin(1)	12	Acute lymphoblastic leukemia(166;0.155)					CATATTTTCCTGGGGGGAAAA	0.403												
USP33	23032	broad.mit.edu	37	1	78178969	78178969	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:78178968_78178968TA>T	uc001dht.3	-	21	2656	c.2309_splice	c.e21-1	p.G770_splice	USP33_uc001dhs.3_Splice_Site_p.G491_splice|USP33_uc001dhu.3_Splice_Site_p.G739_splice|USP33_uc001dhv.3_Splice_Site_p.G575_splice|USP33_uc001dhw.3_Splice_Site_p.G762_splice	NM_015017	NP_963918	Q8TEY7	UBP33_HUMAN	Homo sapiens ubiquitin specific peptidase 33 (USP33), transcript variant 1, mRNA.	770	DUSP 1.				axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	VCB complex|perinuclear region of cytoplasm	G-protein-coupled receptor binding|cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			breast(1)|central_nervous_system(2)|endometrium(4)|kidney(4)|large_intestine(10)|lung(19)|ovary(1)|prostate(2)|urinary_tract(1)	44						GAGGAACACCTAAAAAAATAT	0.289												
MDM4	4194	broad.mit.edu	37	1	204499948	204499948	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:204499947_204499947TA>T	uc001hba.3	+	4	453	c.287_splice	c.e4+2	p.S96_splice	MDM4_uc001hbd.2_Splice_Site|MDM4_uc010pqw.2_Splice_Site|MDM4_uc010pqx.2_Splice_Site|MDM4_uc001hay.2_Splice_Site_p.S96_splice|MDM4_uc021phx.1_Intron|MDM4_uc001hbb.3_Splice_Site|MDM4_uc010pqy.2_Splice_Site|MDM4_uc001hbc.3_Splice_Site|MDM4_uc009xbe.1_Splice_Site	NM_002393	NP_002384	O15151	MDM4_HUMAN	Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant 1, mRNA.	96	SWIB.				G0 to G1 transition|apoptosis|cell proliferation|cellular response to hypoxia|negative regulation of apoptosis|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of protein catabolic process|negative regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization	nucleus	enzyme binding|zinc ion binding			central_nervous_system(2)|endometrium(1)|large_intestine(3)|lung(4)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)	16	all_cancers(21;0.00146)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.112)|all_epithelial(62;0.118)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;3.15e-47)|all cancers(3;3.56e-32)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|Epithelial(59;0.143)|BRCA - Breast invasive adenocarcinoma(75;0.143)			AGACCCAAGGTAAAAACAGTG	0.398			A		"""GBM, bladder, retinoblastoma"""							
AHCTF1	25909	broad.mit.edu	37	1	247062817	247062817	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:247062816_247062816TA>T	uc001ibv.2	-	11	1557	c.1460_splice	c.e11-1	p.D487_splice	AHCTF1_uc009xgs.1_Splice_Site	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	Homo sapiens AT hook containing transcription factor 1 (AHCTF1), mRNA.	478	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mRNA transport|mitotic prometaphase|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			NS(1)|breast(6)|cervix(3)|endometrium(8)|kidney(6)|large_intestine(12)|liver(2)|lung(21)|ovary(5)|prostate(1)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(2)	74	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			AAGTGGCATCTAAAAAAAAGA	0.308												
USP34	9736	broad.mit.edu	37	2	61577527	61577527	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:61577526_61577526TA>T	uc002sbe.3	-	12	1400	c.1378_splice	c.e12-1	p.T460_splice		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	Homo sapiens ubiquitin specific peptidase 34 (USP34), mRNA.	460					Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			autonomic_ganglia(1)|breast(14)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(24)|lung(52)|ovary(8)|prostate(10)|skin(6)|urinary_tract(2)	138			Epithelial(17;0.229)			GTACAGTGTCTAAAAAAAAGA	0.338												
PPP3R1	5534	broad.mit.edu	37	2	68413787	68413788	+	Splice_Site	DEL	AA	AA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:68413786_68413787TAA>T	uc002sei.1	-	5	673	c.281_splice	c.e5-1	p.F94_splice		NM_000945	NP_000936	P63098	CANB1_HUMAN	Homo sapiens protein phosphatase 3, regulatory subunit B, alpha (PPP3R1), mRNA.	94	EF-hand 3.				activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals	calcineurin complex|cytosol	calcium ion binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding			large_intestine(1)	1					Pimecrolimus(DB00337)	GGAAAGCAACTAAAAAAAAGGA	0.332												
PRPF40A	55660	broad.mit.edu	37	2	153520288	153520288	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:153520287_153520287TA>T	uc002tyh.4	-	19	1994	c.1972_splice	c.e19-1	p.D658_splice	PRPF40A_uc002tyg.4_Splice_Site_p.D114_splice|PRPF40A_uc010zcd.1_Splice_Site_p.D609_splice	NM_017892	NP_060362	O75400	PR40A_HUMAN	Homo sapiens PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) (PRPF40A), mRNA.	685	FF 4.				RNA splicing|mRNA processing	nuclear matrix|nuclear speck	protein binding			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(9)|prostate(1)|urinary_tract(1)	21						TCCTTTATCCTAAAAAAAAGA	0.254												
GMPPB	29925	broad.mit.edu	37	3	49760738	49760741	+	Splice_Site	DEL	GGAA	GGAA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:49760737_49760740TGGAA>T	uc003cxl.1	-	3	436	c.211_splice	c.e3-1	p.L71_splice	GMPPB_uc003cxk.1_Splice_Site_p.L71_splice	NM_013334	NP_037466	Q9Y5P6	GMPPB_HUMAN	Homo sapiens GDP-mannose pyrophosphorylase B (GMPPB), transcript variant 1, mRNA.	71					GDP-mannose biosynthetic process|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine		GTP binding|mannose-1-phosphate guanylyltransferase activity			endometrium(1)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.53e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GATTCCCAGCTGGAAGGAAGAGGC	0.583												
ACTR8	93973	broad.mit.edu	37	3	53910110	53910111	+	Splice_Site	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:53910109_53910110T>TG	uc003dhd.3	-	7	880	c.779_splice	c.e7-1	p.G260_splice	ACTR8_uc003dhb.3_Splice_Site_p.G10_splice|ACTR8_uc003dhc.3_Splice_Site_p.G149_splice	NM_022899	NP_075050	Q9H981	ARP8_HUMAN	Homo sapiens ARP8 actin-related protein 8 homolog (yeast) (ACTR8), mRNA.	260					DNA recombination|DNA repair|cell division|mitosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex	protein binding			autonomic_ganglia(1)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(3)|lung(6)|ovary(2)|prostate(1)	19				BRCA - Breast invasive adenocarcinoma(193;0.000143)|KIRC - Kidney renal clear cell carcinoma(284;0.00544)|Kidney(284;0.00607)|OV - Ovarian serous cystadenocarcinoma(275;0.111)		CCACAATCCCTGGGGGGGGAAA	0.515												
FAM55C	91775	broad.mit.edu	37	3	101525973	101525973	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:101525972_101525972TA>T	uc003dvn.3	+	6	1559	c.922_splice	c.e6+2	p.E308_splice	FAM55C_uc010hpn.3_Splice_Site_p.E308_splice	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	Homo sapiens family with sequence similarity 55, member C (FAM55C), transcript variant 2, mRNA.	308						extracellular region				breast(2)|endometrium(6)|kidney(1)|large_intestine(4)|lung(14)|ovary(1)|pancreas(1)|prostate(1)|skin(2)	32						GAATAAAAGGTAAAAAAAAGA	0.353												
KIAA1524	57650	broad.mit.edu	37	3	108276263	108276263	+	Splice_Site	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:108276262_108276262CT>C	uc003dxb.4	-	17	2283	c.2014_splice	c.e17-1	p.A672_splice		NM_020890	NP_065941	Q8TCG1	CIP2A_HUMAN	Homo sapiens KIAA1524 (KIAA1524), mRNA.	672						cytoplasm|integral to membrane	protein binding			NS(1)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(5)|lung(21)|ovary(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	38						GTGTCCGTGCCTCAAAAAAAA	0.363												
STAG1	10274	broad.mit.edu	37	3	136240262	136240262	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:136240261_136240261TA>T	uc003era.1	-	7	764	c.472_splice	c.e7-1	p.D158_splice	STAG1_uc003erb.1_Splice_Site_p.D158_splice|STAG1_uc003erc.1_Splice_Site|STAG1_uc010hua.1_Splice_Site_p.D21_splice|STAG1_uc003ere.3_Splice_Site_p.D158_splice	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	Homo sapiens stromal antigen 1 (STAG1), mRNA.	158					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			NS(2)|breast(4)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(16)|lung(16)|ovary(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	58						ACCACTGTCCTAAAAAACAGA	0.358												
COL25A1	84570	broad.mit.edu	37	4	109753592	109753592	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:109753591_109753591TA>T	uc021xqo.1	-	31	1713	c.1657_splice	c.e31-1	p.G553_splice	COL25A1_uc003hze.1_Splice_Site_p.G553_splice|COL25A1_uc021xqp.1_Splice_Site_p.G553_splice|COL25A1_uc003hzg.3_Splice_Site_p.G553_splice|COL25A1_uc003hzd.3_Splice_Site|COL25A1_uc003hzf.3_Splice_Site_p.G350_splice	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	Homo sapiens collagen, type XXV, alpha 1 (COL25A1), transcript variant 1, mRNA.	553						collagen|extracellular space	beta-amyloid binding|heparin binding			NS(3)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(8)|lung(19)|ovary(2)|pancreas(1)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(1)	49		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		ATCTGTACCCTAAAAAAAAGA	0.393												
SLCO6A1	133482	broad.mit.edu	37	5	101755728	101755728	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:101755727_101755727TA>T	uc003knn.3	-	8	1449	c.1277_splice	c.e8-1	p.G426_splice	SLCO6A1_uc003kno.3_Intron|SLCO6A1_uc003knp.3_Splice_Site_p.G426_splice|SLCO6A1_uc003knq.3_Splice_Site_p.G364_splice	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	Homo sapiens solute carrier organic anion transporter family, member 6A1 (SLCO6A1), mRNA.	426						integral to membrane|plasma membrane	transporter activity			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(17)|lung(22)|ovary(3)|prostate(4)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(1)	60		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		AAACAAGTCCTAAAAAAAAGG	0.343												
RNF145	153830	broad.mit.edu	37	5	158596066	158596066	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:158596065_158596065TA>T	uc010jiq.2	-	8	1179	c.1029_splice	c.e8-1	p.R343_splice	RNF145_uc011ddy.2_Splice_Site_p.R327_splice|RNF145_uc003lxo.2_Splice_Site_p.R341_splice|RNF145_uc011ddz.2_Splice_Site_p.R330_splice|RNF145_uc003lxp.3_Splice_Site_p.R313_splice|RNF145_uc011dea.2_Intron	NM_001199380	NP_001186309	Q96MT1	RN145_HUMAN	Homo sapiens ring finger protein 145 (RNF145), transcript variant 1, mRNA.	313						integral to membrane	zinc ion binding			endometrium(7)|kidney(2)|large_intestine(5)|lung(9)|ovary(3)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	30	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTCATGCCCCTAAAAAAAGCA	0.363												
MAGI2	9863	broad.mit.edu	37	7	77764526	77764526	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:77764525_77764525TA>T	uc003ugx.3	-	17	3100	c.2846_splice	c.e17-1	p.T949_splice	MAGI2_uc003ugy.3_Splice_Site_p.T935_splice|MAGI2_uc010ldx.1_Splice_Site_p.T542_splice	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	Homo sapiens membrane associated guanylate kinase, WW and PDZ domain containing 2 (MAGI2), mRNA.	949	PDZ 5.					cell junction|synapse|synaptosome	phosphatase binding			NS(1)|breast(3)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(12)|lung(37)|ovary(5)|prostate(1)|skin(8)|upper_aerodigestive_tract(1)|urinary_tract(3)	84		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GGGGCACAGCTAAAAAAACCC	0.458												
ABCB4	5244	broad.mit.edu	37	7	87092227	87092227	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:87092226_87092226TA>T	uc003uiv.1	-	4	212	c.136_splice	c.e4-1	p.F46_splice	ABCB4_uc003uiw.1_Splice_Site_p.F46_splice|ABCB4_uc003uix.1_Splice_Site_p.F46_splice|ABCB4_uc003uiy.3_Splice_Site_p.F46_splice	NM_018849	NP_061337	P21439	MDR3_HUMAN	Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 4 (ABCB4), transcript variant B, mRNA.	46					cellular lipid metabolic process	Golgi membrane|apical plasma membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			breast(5)|endometrium(7)|kidney(2)|large_intestine(15)|lung(32)|ovary(4)|pancreas(2)|prostate(4)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	77	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					GTATCGAAACTAAAAAAAGGA	0.343												
NUP205	23165	broad.mit.edu	37	7	135258404	135258404	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:135258403_135258403CA>C	uc003vsw.3	+	3	203	c.172_splice	c.e3-1	p.P58_splice	NUP205_uc011kqa.1_Splice_Site	NM_015135	NP_055950	Q92621	NU205_HUMAN	Homo sapiens nucleoporin 205kDa (NUP205), mRNA.	58					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			breast(4)|central_nervous_system(2)|endometrium(9)|kidney(7)|large_intestine(17)|liver(4)|lung(36)|ovary(5)|prostate(1)|skin(2)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(3)	93						TCATTGTAGCCAAAAAATGTT	0.413												
MLL3	58508	broad.mit.edu	37	7	151836879	151836879	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:151836878_151836878TA>T	uc003wla.3	-	56	14563	c.14344_splice	c.e56-1	p.G4782_splice	MLL3_uc003wkz.3_Splice_Site_p.G3896_splice|MLL3_uc003wkx.3_Splice_Site_p.G940_splice|MLL3_uc003wky.3_Splice_Site_p.G2342_splice	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	Homo sapiens myeloid/lymphoid or mixed-lineage leukemia 3 (MLL3), mRNA.	4782	SET.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			NS(6)|biliary_tract(9)|breast(24)|central_nervous_system(18)|cervix(6)|endometrium(31)|haematopoietic_and_lymphoid_tissue(1)|kidney(26)|large_intestine(52)|liver(1)|lung(102)|ovary(10)|pancreas(17)|prostate(15)|skin(20)|soft_tissue(1)|stomach(3)|upper_aerodigestive_tract(8)|urinary_tract(15)	365	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GCCCAGCCCCTAAAAAAAAGT	0.413			N		medulloblastoma							
FBXL6	26233	broad.mit.edu	37	8	145580194	145580194	+	Splice_Site	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145580193_145580193TG>T	uc003zcb.3	-	7	1070	c.994_splice	c.e7-1	p.V332_splice	C8ORFK29_uc011llb.2_5'Flank|C8ORFK29_uc010mfw.3_5'Flank|C8ORFK29_uc003zby.4_5'Flank|FBXL6_uc003zbz.3_Splice_Site_p.V59_splice|FBXL6_uc003zca.3_Splice_Site_p.V326_splice|FBXL6_uc010mfx.3_Splice_Site_p.V93_splice|SLC52A2_uc003zcc.2_5'Flank|SLC52A2_uc003zce.2_5'Flank|SLC52A2_uc010mfy.2_5'Flank|SLC52A2_uc011llc.2_5'Flank|SLC52A2_uc003zcd.2_5'Flank	NM_012162	NP_036294	Q8N531	FBXL6_HUMAN	Homo sapiens F-box and leucine-rich repeat protein 6 (FBXL6), transcript variant 1, mRNA.	332					proteolysis		ubiquitin-protein ligase activity			endometrium(1)|lung(3)|ovary(1)	5	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			CCGCAGCACCTGGGGGCAAGG	0.672												
SLC39A4	55630	broad.mit.edu	37	8	145640283	145640283	+	Splice_Site	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145640282_145640282TG>T	uc003zcq.3	-	5	905	c.805_splice	c.e5-1	p.V269_splice	SLC39A4_uc003zcm.1_5'Flank|SLC39A4_uc003zcn.3_5'Flank|SLC39A4_uc003zco.3_5'UTR|SLC39A4_uc003zcp.3_Splice_Site_p.V244_splice	NM_130849	NP_570901	Q6P5W5	S39A4_HUMAN	Homo sapiens solute carrier family 39 (zinc transporter), member 4 (SLC39A4), transcript variant 2, mRNA.	269						cytoplasmic membrane-bounded vesicle|integral to membrane|recycling endosome membrane	zinc ion transmembrane transporter activity			endometrium(1)|kidney(1)|large_intestine(1)|lung(5)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)	14	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;1.12e-40)|all cancers(56;8.17e-36)|BRCA - Breast invasive adenocarcinoma(115;0.0407)|Colorectal(110;0.055)			CAGGCATACCTGGGGGGTGGC	0.672												
JMJD1C	221037	broad.mit.edu	37	10	64975218	64975218	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:64975217_64975217TA>T	uc001jmn.3	-	7	1123	c.823_splice	c.e7-1	p.S275_splice	JMJD1C_uc001jml.3_Splice_Site_p.S56_splice|JMJD1C_uc001jmm.3_Splice_Site|JMJD1C_uc010qiq.2_Splice_Site_p.S93_splice|JMJD1C_uc009xpi.3_Splice_Site_p.S93_splice|JMJD1C_uc009xpj.2_Splice_Site|JMJD1C_uc001jmp.1_Splice_Site	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	Homo sapiens jumonji domain containing 1C (JMJD1C), transcript variant 1, mRNA.	275					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			breast(2)|central_nervous_system(2)|cervix(1)|endometrium(8)|kidney(8)|large_intestine(9)|lung(27)|ovary(6)|prostate(4)|skin(4)|stomach(3)|upper_aerodigestive_tract(3)	77	Prostate(12;0.0119)|all_hematologic(501;0.191)					ATAATGGCTCTAAAAATAACC	0.373												
SORCS1	114815	broad.mit.edu	37	10	108489875	108489875	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:108489874_108489874TA>T	uc001kyl.3	-	6	1142	c.960_splice	c.e6-1	p.W320_splice	SORCS1_uc021pxw.1_Splice_Site_p.W320_splice|SORCS1_uc009xxs.3_Splice_Site_p.W320_splice|SORCS1_uc001kym.3_Splice_Site_p.W320_splice|SORCS1_uc001kyn.2_Splice_Site_p.W320_splice|SORCS1_uc001kyo.3_Splice_Site_p.W320_splice	NM_001013031	NP_001013049	Q8WY21	SORC1_HUMAN	Homo sapiens sortilin-related VPS10 domain containing receptor 1 (SORCS1), transcript variant 2, mRNA.	320						integral to membrane	neuropeptide receptor activity|protein binding			breast(5)|central_nervous_system(1)|cervix(2)|endometrium(9)|kidney(2)|large_intestine(24)|lung(69)|ovary(1)|prostate(8)|skin(1)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	127		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		ATCACAGACCTAAAAAATGGA	0.423												
NAP1L4	4676	broad.mit.edu	37	11	2991167	2991168	+	Splice_Site	DEL	AA	AA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:2991166_2991167TAA>T	uc010qxm.2	-	8	687	c.403_splice	c.e8-1	p.G135_splice	NAP1L4_uc001lxc.3_Splice_Site_p.G135_splice|NAP1L4_uc010qxn.2_Splice_Site_p.G135_splice	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	Homo sapiens nucleosome assembly protein 1-like 4 (NAP1L4), mRNA.	135					nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			endometrium(2)|kidney(3)|large_intestine(1)|lung(6)|ovary(1)	13		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		CATGTCTCCCTAAAAAAAAGAT	0.416												
ATL3	25923	broad.mit.edu	37	11	63420050	63420050	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:63420049_63420049TA>T	uc001nxk.1	-	4	682	c.406_splice	c.e4-1	p.V136_splice	ATL3_uc010rms.1_Splice_Site_p.V118_splice	NM_015459	NP_056274	Q6DD88	ATLA3_HUMAN	Homo sapiens atlastin GTPase 3 (ATL3), mRNA.	136					Golgi organization|endoplasmic reticulum organization|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	GTP binding|GTPase activity|identical protein binding			endometrium(1)|large_intestine(3)|lung(2)|ovary(1)|pancreas(1)|skin(1)|stomach(1)|urinary_tract(1)	11						AACTGCAACCTAAAAAAAAGG	0.373												
ARAP1	116985	broad.mit.edu	37	11	72404518	72404518	+	Splice_Site	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:72404517_72404517TG>T	uc001osu.3	-	29	3998	c.3809_splice	c.e29-1	p.A1270_splice	ARAP1_uc001osv.3_Splice_Site_p.A1270_splice|ARAP1_uc001osr.3_Splice_Site_p.A1030_splice|ARAP1_uc001oss.3_Splice_Site_p.A1025_splice|ARAP1_uc009yth.3_Splice_Site_p.A964_splice|ARAP1_uc010rre.2_Splice_Site_p.A1025_splice|BC150585_uc009yti.1_Non-coding_Transcript	NM_001040118	NP_056057	Q96P48	ARAP1_HUMAN	Homo sapiens ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 (ARAP1), transcript variant 3, mRNA.	1270					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	Golgi cisterna membrane|cytosol|plasma membrane	ARF GTPase activator activity|Rho GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|zinc ion binding			cervix(2)|endometrium(2)|large_intestine(10)|lung(8)|ovary(1)|skin(3)|urinary_tract(1)	27						CACGGCTGGCTGGGGGGTGGG	0.662												
PLCZ1	89869	broad.mit.edu	37	12	18841025	18841025	+	Splice_Site	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:18841024_18841024AT>A	uc021qvx.1	-	13	1782	c.1591_splice	c.e13+1	p.A531_splice	PLCZ1_uc001rdv.4_Splice_Site_p.A427_splice|PLCZ1_uc001rdw.4_Splice_Site_p.A272_splice|PLCZ1_uc001rdu.1_Splice_Site_p.A313_splice|PLCZ1_uc009zil.1_Splice_Site	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	Homo sapiens phospholipase C, zeta 1 (PLCZ1), mRNA.	531	C2.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			NS(1)|breast(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|lung(13)|ovary(1)|skin(4)|upper_aerodigestive_tract(1)	31	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					GGAGCTCACCATTTTTTTTAA	0.294												
KIF21A	55605	broad.mit.edu	37	12	39735929	39735929	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:39735928_39735928TA>T	uc001rly.3	-	13	2133	c.1713_splice	c.e13-1	p.S571_splice	KIF21A_uc001rlw.3_5'Flank|KIF21A_uc001rlx.3_Splice_Site_p.S558_splice|KIF21A_uc001rlz.3_Splice_Site_p.S558_splice|KIF21A_uc010skl.2_Splice_Site_p.S558_splice	NM_001173464	NP_001166935	Q7Z4S6	KI21A_HUMAN	Homo sapiens kinesin family member 21A (KIF21A), transcript variant 1, mRNA.	571					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			NS(1)|breast(1)|central_nervous_system(1)|cervix(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(14)|lung(41)|ovary(5)|pancreas(1)|prostate(1)|skin(4)|stomach(1)|urinary_tract(2)	86		Lung NSC(34;0.179)|all_lung(34;0.213)				CCAGCCACACTAAAAAAAGGA	0.333												
KRT75	9119	broad.mit.edu	37	12	52822530	52822533	+	Splice_Site	DEL	GAGA	GAGA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:52822529_52822532TGAGA>T	uc001saj.2	-	6	1058	c.1036_splice	c.e6-1	p.Y346_splice		NM_004693	NP_004684	O95678	K2C75_HUMAN	Homo sapiens keratin 75 (KRT75), mRNA.	346	Coil 2.|Rod.					keratin filament	structural molecule activity			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(13)|lung(10)|prostate(1)|skin(1)	28				BRCA - Breast invasive adenocarcinoma(357;0.192)		CTCCTCGTACTGAGAGAACCAGAG	0.554												
FLT1	2321	broad.mit.edu	37	13	29012359	29012359	+	Splice_Site	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:29012358_29012358CT>C	uc001usb.3	-	4	798	c.513_splice	c.e4+1	p.K171_splice	FLT1_uc010aar.1_Splice_Site_p.K171_splice|FLT1_uc001usc.3_Splice_Site_p.K171_splice|FLT1_uc010tdp.1_Splice_Site_p.K171_splice	NM_002019	NP_002010	P17948	VGFR1_HUMAN	Homo sapiens fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) (FLT1), transcript variant 1, mRNA.	171	Ig-like C2-type 2.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	Golgi apparatus|extracellular space|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			NS(1)|breast(2)|central_nervous_system(5)|endometrium(8)|kidney(3)|large_intestine(20)|lung(55)|ovary(3)|prostate(1)|skin(12)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	115	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TCAAATTTACCTTTTTTAAAG	0.383												
DOCK9	23348	broad.mit.edu	37	13	99536156	99536156	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:99536155_99536155TA>T	uc001vnt.2	-	22	2441	c.2386_splice	c.e22-1	p.H796_splice	DOCK9_uc001vnw.2_Splice_Site_p.H795_splice|DOCK9_uc021rlw.1_Splice_Site_p.H795_splice|DOCK9_uc001vnv.1_Splice_Site|DOCK9_uc010tir.1_Splice_Site_p.H796_splice|DOCK9_uc010tis.1_Splice_Site_p.H795_splice|DOCK9_uc010tit.1_Splice_Site_p.H796_splice|DOCK9_uc010afu.1_Splice_Site_p.H642_splice	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	Homo sapiens dedicator of cytokinesis 9 (DOCK9), transcript variant 1, mRNA.	796	DHR-1.				blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			breast(3)|central_nervous_system(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(12)|lung(18)|prostate(3)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	59	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					ACCATAATGCTAAAAAAAATA	0.403												
MYO5C	55930	broad.mit.edu	37	15	52564923	52564923	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:52564922_52564922TA>T	uc010bff.3	-	6	769	c.607_splice	c.e6-1	p.A203_splice	MYO5C_uc010uga.2_Splice_Site|MYO5C_uc010ugb.2_Splice_Site|MYO5C_uc010ugc.2_Splice_Site_p.A166_splice	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	Homo sapiens myosin VC (MYO5C), mRNA.	203	Myosin head-like.					myosin complex	ATP binding|actin binding|calmodulin binding|motor activity			breast(1)|central_nervous_system(3)|cervix(1)|endometrium(8)|kidney(7)|large_intestine(15)|lung(12)|ovary(7)|prostate(3)|skin(6)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	66				all cancers(107;0.0137)		TCCAACGGCCTAAAAAAAATA	0.363												
C16orf7	9605	broad.mit.edu	37	16	89778933	89778933	+	Splice_Site	DEL	G	G	-	rs143123169	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:89778932_89778932TG>T	uc002fom.1	-	6	669	c.544_splice	c.e6-1	p.T182_splice	C16orf7_uc002fol.1_Splice_Site_p.T112_splice|LOC100128881_uc002fon.1_Intron	NM_004913	NP_004904	Q9Y2B5	CP007_HUMAN	Homo sapiens chromosome 16 open reading frame 7 (C16orf7), mRNA.	182					ATP synthesis coupled proton transport		GTPase activator activity|transporter activity			breast(1)|lung(3)|ovary(1)	5		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		AGAGAGGGTCTGGGGGGGGAG	0.667												
RAMP2	10266	broad.mit.edu	37	17	40914372	40914373	+	Splice_Site	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40914371_40914372A>AG	uc002ibg.3	+	3	232	c.164_splice	c.e3-1	p.G55_splice	LOC100190938_uc002ibe.4_5'Flank|LOC100190938_uc002ibf.4_5'Flank|RAMP2_uc010cyt.3_Frame_Shift_Ins_p.T59fs|RAMP2_uc021txv.1_Intron	NM_005854	NP_005845	O60895	RAMP2_HUMAN	Homo sapiens receptor (G protein-coupled) activity modifying protein 2 (RAMP2), mRNA.	55					intracellular protein transport|receptor-mediated endocytosis|regulation of G-protein coupled receptor protein signaling pathway	coated pit|integral to plasma membrane|lysosome	protein transporter activity			endometrium(2)|lung(1)|stomach(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0741)	Pramlintide(DB01278)	CTGTACCTACAGGGGGGACGGT	0.505												
EVPL	2125	broad.mit.edu	37	17	74010507	74010509	+	Splice_Site	DEL	CTT	CTT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:74010506_74010508CCTT>C	uc010wss.1	-	18	2667	c.2439_splice	c.e18+1	p.K813_splice	EVPL_uc002jqi.2_Splice_Site_p.K791_splice|EVPL_uc010wst.1_Splice_Site_p.K261_splice	NM_001988	NP_001979	Q92817	EVPL_HUMAN	Homo sapiens envoplakin (EVPL), mRNA.	791	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			breast(4)|central_nervous_system(4)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(8)|lung(14)|ovary(2)|pancreas(2)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(4)	54						CCCAGCCTCACCTTCTGCGCCTG	0.670												
RAB12	201475	broad.mit.edu	37	18	8636358	8636358	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:8636357_8636357TA>T	uc002knp.3	+	5	904	c.621_splice	c.e5+2	p.K207_splice		NM_001025300	NP_001020471	Q6IQ22	RAB12_HUMAN	Homo sapiens RAB12, member RAS oncogene family (RAB12), mRNA.	207					protein transport|small GTPase mediated signal transduction	Golgi membrane	GTP binding			breast(1)|lung(4)|prostate(1)|urinary_tract(1)	7						CTGAAAAAGGTAAAAAAAAGA	0.328												
LMAN1	3998	broad.mit.edu	37	18	57013285	57013285	+	Splice_Site	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:57013284_57013284CT>C	uc002lhz.3	-	8	855	c.823_splice	c.e8-1	p.P275_splice		NM_005570	NP_005561	P49257	LMAN1_HUMAN	Homo sapiens lectin, mannose-binding, 1 (LMAN1), mRNA.	275					ER to Golgi vesicle-mediated transport|blood coagulation|post-translational protein modification|protein N-linked glycosylation via asparagine|protein folding|protein transport	ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|endoplasmic reticulum membrane|integral to membrane	mannose binding|metal ion binding|unfolded protein binding			breast(2)|endometrium(1)|kidney(2)|large_intestine(3)|lung(5)|ovary(1)|prostate(1)|skin(1)	16		Colorectal(73;0.0946)			Antihemophilic Factor(DB00025)	CTGGTGTGGGCTTTTTTTTGG	0.294												
ZNF43	7594	broad.mit.edu	37	19	22002026	22002026	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:22002025_22002025TA>T	uc002nqj.3	-	2	134	c.4_splice	c.e2-1	p.G2_splice	ZNF43_uc002nql.3_Splice_Site|ZNF43_uc002nqm.3_Splice_Site|ZNF43_uc010ecv.3_Splice_Site|ZNF43_uc002nqk.3_Intron	NM_003423	NP_003414	P17038	ZNF43_HUMAN	Homo sapiens zinc finger protein 43 (ZNF43), mRNA.	2					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			autonomic_ganglia(1)|breast(2)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(14)|liver(1)|lung(16)|ovary(2)|prostate(3)|stomach(3)|upper_aerodigestive_tract(2)	51		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		CAATGGTCCCTAAAAAAAACA	0.383												
MORC2	22880	broad.mit.edu	37	22	31331151	31331151	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:31331150_31331150TA>T	uc003aje.1	-	20	2991	c.1627_splice	c.e20-1	p.E543_splice		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	Homo sapiens MORC family CW-type zinc finger 2 (MORC2), mRNA.	605							ATP binding|zinc ion binding			breast(2)|kidney(2)|large_intestine(5)|lung(4)|ovary(2)|pancreas(1)|skin(4)|upper_aerodigestive_tract(1)	21						CACAGGTTCCTAAAAAAAGGC	0.567												
LARP4B	23185	broad.mit.edu	37	10	890939	890939	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:890939delT	uc001ifs.1	-	5	528	c.487delA	c.(487-489)ACAfs	p.T163fs		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	163	HTH La-type RNA-binding.						nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						AATTCCAATGTTTTTTTAAGT	0.353												
RTKN2	219790	broad.mit.edu	37	10	63999501	63999501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:63999501delA	uc001jlw.2	-	5	491	c.394delT	c.(394-396)TGTfs	p.C132fs	RTKN2_uc001jlx.2_Frame_Shift_Del_p.C132fs	NM_145307	NP_660350	Q8IZC4	RTKN2_HUMAN	rhotekin 2	132					signal transduction	intracellular					0	Prostate(12;0.0297)|all_hematologic(501;0.215)					TTGAATAAACAAAAAATGGCA	0.289												
PCF11	51585	broad.mit.edu	37	11	82877219	82877219	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:82877219delA	uc001ozx.3	+	5	1625	c.1280delA	c.(1279-1281)GAAfs	p.E427fs	PCF11_uc010rsu.1_Frame_Shift_Del_p.E427fs	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	427	Lys-rich.				mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						AAAACTGCAGAAAAAAAGGAT	0.348												
TREH	11181	broad.mit.edu	37	11	118529408	118529408	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:118529408delC	uc001pty.1	-	14	1625	c.1580delG	c.(1579-1581)GGAfs	p.G527fs	TREH_uc009zaj.1_Frame_Shift_Del_p.G496fs|TREH_uc001ptz.1_Frame_Shift_Del_p.G404fs	NM_007180	NP_009111	O43280	TREA_HUMAN	trehalase precursor	527					polysaccharide digestion|trehalose catabolic process	anchored to plasma membrane	alpha,alpha-trehalase activity			pancreas(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.16e-05)		ATATTCTCCTCCCCCACCGGG	0.612												
MLL2	8085	broad.mit.edu	37	12	49434492	49434492	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:49434492delG	uc001rta.3	-	31	7061	c.7061delC	c.(7060-7062)CCTfs	p.P2354fs		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2354	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						AGCCTGGGCAGGGGGTGGCTC	0.622			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)		
OR6S1	341799	broad.mit.edu	37	14	21109390	21109390	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:21109390delC	uc001vxv.1	-	1	461	c.461delG	c.(460-462)GGAfs	p.G154fs		NM_001001968	NP_001001968	Q8NH40	OR6S1_HUMAN	olfactory receptor, family 6, subfamily S,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00304)		Epithelial(56;1.23e-06)|all cancers(55;1.01e-05)	GBM - Glioblastoma multiforme(265;0.0135)		AGGGACGAGTCCCCCCACCCA	0.607												
IGFALS	3483	broad.mit.edu	37	16	1842147	1842147	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:1842147delG	uc002cmy.2	-	2	353	c.272delC	c.(271-273)CCGfs	p.P91fs	IGFALS_uc010uvn.1_Frame_Shift_Del_p.P129fs|IGFALS_uc010uvo.1_5'UTR	NM_004970	NP_004961	P35858	ALS_HUMAN	insulin-like growth factor binding protein, acid	91	LRR 1.				cell adhesion|signal transduction	soluble fraction	insulin-like growth factor binding				0						GAAGGCTGCCGGGGGGACGGA	0.682												
PKMYT1	9088	broad.mit.edu	37	16	3026876	3026876	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:3026876delG	uc002csn.2	-	3	610	c.167delC	c.(166-168)CCTfs	p.P56fs	PKMYT1_uc010uwn.1_RNA|PKMYT1_uc002csm.2_Frame_Shift_Del_p.P56fs|PKMYT1_uc002cso.2_Intron|PKMYT1_uc002csp.2_Frame_Shift_Del_p.P47fs|PKMYT1_uc002csq.2_Frame_Shift_Del_p.P47fs|PKMYT1_uc010bsy.1_Frame_Shift_Del_p.P47fs	NM_004203	NP_004194	Q99640	PMYT1_HUMAN	protein kinase Myt1 isoform 1	56	Pro-rich.				G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis	endoplasmic reticulum membrane|Golgi membrane|membrane fraction|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1						GCCCTTGGCAGGGGGCGGAGG	0.701												
SIAH1	6477	broad.mit.edu	37	16	48396053	48396053	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:48396053delA	uc002efo.1	-	2	404	c.287delT	c.(286-288)TTCfs	p.F96fs	uc002efk.1_RNA|SIAH1_uc002efl.2_RNA|SIAH1_uc002efn.1_Frame_Shift_Del_p.F127fs	NM_003031	NP_003022	Q8IUQ4	SIAH1_HUMAN	seven in absentia homolog 1 isoform a	96	SIAH-type.|SBD.				axon guidance|cell cycle|neuron apoptosis|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|spermatogenesis	beta-catenin destruction complex|cytosol|nucleus	protein C-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		all_cancers(37;0.157)|all_lung(18;0.11)|Breast(268;0.238)				TTTACAGGGGAAAAGTACTGA	0.478												
TERF2	7014	broad.mit.edu	37	16	69419639	69419639	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:69419639delC	uc002exd.2	-	1	235	c.110delG	c.(109-111)GGCfs	p.G37fs	TERF2_uc002exe.2_Frame_Shift_Del_p.G37fs	NM_005652	NP_005643	Q15554	TERF2_HUMAN	telomeric repeat binding factor 2	37					age-dependent telomere shortening|cell cycle|cellular senescence|negative regulation of telomere maintenance via semi-conservative replication|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|regulation of transcription, DNA-dependent|telomeric loop formation	Golgi apparatus|nuclear telomere cap complex|nucleoplasm	double-stranded telomeric DNA binding|protein C-terminus binding|protein homodimerization activity			lung(1)	1		Ovarian(137;0.101)				ctccgccgggccccccagccc	0.463												
BCAR1	9564	broad.mit.edu	37	16	75269317	75269318	+	Frame_Shift_Ins	INS	-	-	G	rs3206884		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:75269317_75269318insG	uc002fdv.2	-	5	1602_1603	c.1479_1480insC	c.(1477-1482)CCCTCTfs	p.P493fs	BCAR1_uc002fdt.2_5'UTR|BCAR1_uc002fdu.2_Frame_Shift_Ins_p.P283fs|BCAR1_uc010cgu.2_Frame_Shift_Ins_p.P482fs|BCAR1_uc010vna.1_Frame_Shift_Ins_p.P491fs|BCAR1_uc010vnb.1_Frame_Shift_Ins_p.P539fs|BCAR1_uc002fdw.2_Frame_Shift_Ins_p.P493fs|BCAR1_uc010vnc.1_Frame_Shift_Ins_p.P345fs|BCAR1_uc010vnd.1_Frame_Shift_Ins_p.P511fs|BCAR1_uc002fdx.2_Frame_Shift_Ins_p.P511fs	NM_014567	NP_055382	P56945	BCAR1_HUMAN	breast cancer anti-estrogen resistance 1	493_494	Ser-rich.				actin filament organization|B cell receptor signaling pathway|blood coagulation|cell adhesion|cell division|cell migration|cell proliferation|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|integrin-mediated signaling pathway|nerve growth factor receptor signaling pathway|platelet-derived growth factor receptor signaling pathway|positive regulation of cell migration|regulation of apoptosis|regulation of cell growth|T cell receptor signaling pathway	cytosol|focal adhesion|membrane fraction|ruffle	protein kinase binding|protein phosphatase binding|SH3 domain binding|signal transducer activity			central_nervous_system(5)|breast(2)|prostate(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.169)		TGTGGCTCAGAGGGGCTACGCC	0.703												
NDUFB7	4713	broad.mit.edu	37	19	14682803	14682803	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:14682803delG	uc002mzg.2	-	1	84	c.10delC	c.(10-12)CACfs	p.H4fs		NM_004146	NP_004137	P17568	NDUB7_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	4					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial intermembrane space|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			ovary(1)	1					NADH(DB00157)	CGGACCAGGTGGGCCCCCATG	0.677												
PPP5C	5536	broad.mit.edu	37	19	46850393	46850393	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:46850393delC	uc002pem.2	+	1	100	c.40delC	c.(40-42)CCCfs	p.P14fs	PPP5C_uc010xya.1_5'UTR|PPP5C_uc002pen.2_Frame_Shift_Del_p.P14fs	NM_006247	NP_006238	P53041	PPP5_HUMAN	protein phosphatase 5, catalytic subunit	14					mitosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein dephosphorylation|transcription, DNA-dependent	Golgi apparatus|nucleus	metal ion binding|protein binding|protein serine/threonine phosphatase activity|signal transducer activity			lung(1)|pancreas(1)	2		Ovarian(192;0.0731)|all_neural(266;0.196)		OV - Ovarian serous cystadenocarcinoma(262;0.000196)|all cancers(93;0.00192)|GBM - Glioblastoma multiforme(486;0.0499)|Epithelial(262;0.0504)		GTGTGCTGAGCCCCCCCGGGA	0.687											OREG0025570	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
IL11	3589	broad.mit.edu	37	19	55877435	55877435	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:55877435delC	uc002qks.1	-	5	676	c.540delG	c.(538-540)GGGfs	p.G180fs	FAM71E2_uc002qkr.2_5'Flank|FAM71E2_uc002qkq.2_5'Flank|IL11_uc010yfx.1_Frame_Shift_Del_p.G101fs	NM_000641	NP_000632	P20809	IL11_HUMAN	interleukin 11 precursor	180					B cell differentiation|fat cell differentiation|megakaryocyte differentiation|negative regulation of hormone secretion|platelet activation|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	extracellular space	cytokine activity|growth factor activity|interleukin-11 receptor binding				0	Breast(117;0.191)	Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)	Oprelvekin(DB00038)	TCAGGTGCAGCCCCCCCAGGA	0.562												
TRMT6	51605	broad.mit.edu	37	20	5924808	5924808	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:5924808delT	uc002wmh.1	-	4	580	c.458delA	c.(457-459)AAAfs	p.K153fs	TRMT6_uc010zra.1_5'UTR|TRMT6_uc010gbn.1_5'UTR|TRMT6_uc010gbo.1_RNA	NM_015939	NP_057023	Q9UJA5	TRM6_HUMAN	tRNA methyltransferase 6	153					regulation of translational initiation|tRNA processing	nucleus	protein binding|translation initiation factor activity			pancreas(1)	1						AACTACTTACTTTTTTTTCTT	0.194												
WHSC1	7468	broad.mit.edu	37	4	1978235	1978235	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:1978235delA	uc003gdz.3	+	21	3831	c.3655delA	c.(3655-3657)AAAfs	p.K1219fs	WHSC1_uc003geb.3_Frame_Shift_Del_p.K1219fs|WHSC1_uc003gec.3_Frame_Shift_Del_p.K1219fs|WHSC1_uc003ged.3_Frame_Shift_Del_p.K1219fs|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gei.3_Frame_Shift_Del_p.K438fs|WHSC1_uc011bvh.1_Frame_Shift_Del_p.K280fs|WHSC1_uc010icf.2_Frame_Shift_Del_p.K567fs	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	1219					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		GGAAAAGGGCAAAAAGACCAA	0.527			T	IGH@	MM							
INTS1	26173	broad.mit.edu	37	7	1527082	1527082	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:1527082delC	uc003skn.2	-	20	2621	c.2520delG	c.(2518-2520)GGGfs	p.G840fs	INTS1_uc003skp.1_Frame_Shift_Del_p.G187fs	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	840					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		TCCGGGGGGGCCCCCTGAGGG	0.677												
LRRN3	54674	broad.mit.edu	37	7	110764636	110764637	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:110764636_110764637insA	uc003vft.3	+	4	2854_2855	c.1808_1809insA	c.(1807-1809)AGAfs	p.R603fs	IMMP2L_uc003vfq.1_Intron|IMMP2L_uc010ljr.1_Intron|IMMP2L_uc003vfr.2_Intron|LRRN3_uc003vfu.3_Frame_Shift_Ins_p.R603fs|LRRN3_uc003vfs.3_Frame_Shift_Ins_p.R603fs	NM_001099660	NP_001093130	Q9H3W5	LRRN3_HUMAN	leucine rich repeat neuronal 3 precursor	603	Extracellular (Potential).|Fibronectin type-III.					integral to membrane				skin(3)|ovary(2)|pancreas(2)|central_nervous_system(1)	8				UCEC - Uterine corpus endometrioid carcinoma (4;0.245)|LUSC - Lung squamous cell carcinoma(290;0.0715)|Lung(3;0.0864)|STAD - Stomach adenocarcinoma(3;0.125)		CAGAAAAACAGAAAAAAATGTG	0.356												
ADCK5	203054	broad.mit.edu	37	8	145608333	145608333	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145608333delG	uc003zch.2	+	3	222	c.168delG	c.(166-168)GTGfs	p.V56fs	ADCK5_uc003zcg.2_RNA	NM_174922	NP_777582	Q3MIX3	ADCK5_HUMAN	aarF domain containing kinase 5	56	Helical; (Potential).					integral to membrane	protein serine/threonine kinase activity			stomach(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;8.96e-41)|Epithelial(56;4.08e-40)|all cancers(56;4.51e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			CCGCGGTAGTGGGGGCGCCCC	0.667												
GLRA2	2742	broad.mit.edu	37	X	14548222	14548222	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:14548222delT	uc010nep.2	+	2	375	c.43delT	c.(43-45)TTTfs	p.F15fs	GLRA2_uc010neq.2_Frame_Shift_Del_p.F15fs|GLRA2_uc004cwe.3_Frame_Shift_Del_p.F15fs|GLRA2_uc011mio.1_5'UTR|GLRA2_uc011mip.1_5'Flank	NM_001118885	NP_001112357	P23416	GLRA2_HUMAN	glycine receptor, alpha 2 isoform A	15					neuropeptide signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(1)|lung(1)	2	Hepatocellular(33;0.128)				Ethanol(DB00898)|Glycine(DB00145)	CTTGTTTGCATTTTTCTTAGA	0.363												
SH3KBP1	30011	broad.mit.edu	37	X	19560215	19560215	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:19560215delG	uc004czm.2	-	16	2036	c.1720delC	c.(1720-1722)CTGfs	p.L574fs	SH3KBP1_uc011mje.1_Frame_Shift_Del_p.L313fs|SH3KBP1_uc011mjf.1_Frame_Shift_Del_p.L336fs|SH3KBP1_uc004czl.2_Frame_Shift_Del_p.L537fs|SH3KBP1_uc010nfm.2_Frame_Shift_Del_p.L19fs	NM_031892	NP_114098	Q96B97	SH3K1_HUMAN	SH3-domain kinase binding protein 1 isoform a	574					apoptosis|cell-cell signaling|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytoplasmic vesicle membrane|cytoskeleton|cytosol|focal adhesion|nucleus|synapse|synaptosome	SH3 domain binding				0						GAGGATGACAGGGGGGAGGGC	0.647												
RPS6KA6	27330	broad.mit.edu	37	X	83403063	83403063	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:83403063delT	uc004eej.1	-	4	404	c.327delA	c.(325-327)AAAfs	p.K109fs	RPS6KA6_uc011mqt.1_Frame_Shift_Del_p.K109fs|RPS6KA6_uc011mqu.1_Frame_Shift_Del_p.K6fs|RPS6KA6_uc010nmo.1_RNA	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	109	Protein kinase 1.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						TTAAAGAGGCTTTTTTTAACA	0.303												
TAF7L	54457	broad.mit.edu	37	X	100538467	100538467	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:100538467delT	uc004ehb.2	-	4	520	c.508delA	c.(508-510)ACCfs	p.T170fs	TAF7L_uc004eha.2_Frame_Shift_Del_p.T84fs|TAF7L_uc004ehc.1_Frame_Shift_Del_p.T84fs	NM_024885	NP_079161	Q5H9L4	TAF7L_HUMAN	TATA box binding protein-associated factor, RNA	170					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription initiation from RNA polymerase II promoter	cytoplasm|transcription factor TFIID complex	binding			breast(1)	1						TTATAAAAGGTTTTTTTATCA	0.393												
ZNF75D	7626	broad.mit.edu	37	X	134421687	134421688	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:134421687_134421688insT	uc004eyp.2	-	7	3569_3570	c.914_915insA	c.(913-915)AAGfs	p.K305fs	ZNF75D_uc004eym.2_Intron|ZNF75D_uc004eyn.2_Frame_Shift_Ins_p.K84fs|ZNF75D_uc004eyo.2_Frame_Shift_Ins_p.K210fs	NM_007131	NP_009062	P51815	ZN75D_HUMAN	zinc finger protein 75	305	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TCATTCTGGTCTTTTTTGATAC	0.371												
MAGEC1	9947	broad.mit.edu	37	X	140995386	140995386	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:140995386delG	uc004fbt.2	+	4	2482	c.2196delG	c.(2194-2196)CAGfs	p.Q732fs	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	732							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCTCCTCAGGGGGAGGACT	0.542										HNSCC(15;0.026)		
GABRQ	55879	broad.mit.edu	37	X	151821062	151821062	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:151821062delC	uc004ffp.1	+	9	1237	c.1217delC	c.(1216-1218)GCCfs	p.A406fs		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	406						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCAGCGCAGGCCCCCCTGGCA	0.587												
TMEM187	8269	broad.mit.edu	37	X	153247940	153247941	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:153247940_153247941delCT	uc004fjq.2	+	2	961_962	c.427_428delCT	c.(427-429)CTCfs	p.L143fs	hsa-mir-3202-2|MI0014253_5'Flank	NM_003492	NP_003483	Q14656	TM187_HUMAN	transmembrane protein 187	143	Helical; (Potential).					integral to membrane|transport vesicle					0	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CTGGCTGTTCCTCTCTCTTGAG	0.673												
H2AFB1	474382	broad.mit.edu	37	X	154113626	154113626	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:154113626delT	uc004fmu.2	+	1	310	c.302delT	c.(301-303)CTTfs	p.L101fs	F8_uc004fmt.2_Intron|F8_uc004fms.2_Intron|F8A1_uc004fmv.2_5'Flank	NM_080720	NP_542451	P0C5Y9	H2AB1_HUMAN	H2A histone family, member B3	101	Docking domain.				nucleosome assembly	nucleosome|nucleus	DNA binding				0	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CTGAGCACCCTTTTCAACACG	0.637												
NADK	65220	broad.mit.edu	37	1	1685540	1685541	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:1685539_1685540T>TG	uc001aic.3	-	9	1273_1274	c.1051_1052A>CA	c.(1051-1053)cacfs	p.H351fs	NADK_uc001aid.4_Frame_Shift_Ins_p.H351fs|NADK_uc001aie.3_Frame_Shift_Ins_p.H496fs|NADK_uc010nyv.2_Frame_Shift_Ins_p.H319fs	NM_023018	NP_075394	O95544	NADK_HUMAN	Homo sapiens NAD kinase (NADK), transcript variant 1, mRNA.	351					ATP metabolic process|NAD metabolic process|water-soluble vitamin metabolic process	cytosol	ATP binding|NAD+ kinase activity|metal ion binding|protein binding			NS(1)|autonomic_ganglia(1)|endometrium(4)|large_intestine(2)|lung(4)|ovary(1)|prostate(2)|stomach(1)|urinary_tract(1)	17	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.61e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;8.75e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.33e-23)|GBM - Glioblastoma multiforme(42;1.35e-07)|Colorectal(212;0.000203)|COAD - Colon adenocarcinoma(227;0.000225)|Kidney(185;0.00265)|STAD - Stomach adenocarcinoma(132;0.00655)|BRCA - Breast invasive adenocarcinoma(365;0.00855)|KIRC - Kidney renal clear cell carcinoma(229;0.0382)|Lung(427;0.207)		GGACAGCGAGTGGGGGCAGATG	0.663												
CCDC27	148870	broad.mit.edu	37	1	3688025	3688025	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:3688024_3688024GC>G	uc001akv.2	+	11	1989	c.1908_1908GC>G	c.(1906-1908)gtgfs	p.V636fs	LOC388588_uc001akw.4_5'Flank	NM_152492	NP_689705	Q2M243	CCD27_HUMAN	Homo sapiens coiled-coil domain containing 27 (CCDC27), mRNA.	636										breast(1)|endometrium(2)|kidney(1)|large_intestine(8)|liver(2)|lung(17)|prostate(1)|skin(2)|urinary_tract(2)	36	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		GCGTCAAAGTGCCCCCCCTGC	0.547												
CHD5	26038	broad.mit.edu	37	1	6196693	6196693	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:6196692_6196692TA>T	uc001amb.2	-	16	2692	c.2581_2581TA>A	c.(2581-2583)aggfs	p.R861fs	CHD5_uc001ama.2_Non-coding_Transcript|CHD5_uc001amc.1_Non-coding_Transcript	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	Homo sapiens chromodomain helicase DNA binding protein 5 (CHD5), mRNA.	861	Helicase ATP-binding.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			breast(3)|central_nervous_system(3)|liver(1)|lung(1)|ovary(4)|pancreas(1)|skin(1)|upper_aerodigestive_tract(2)	16	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TTTAAGACCCTAAAAAACTGA	0.602												
TAS1R1	80835	broad.mit.edu	37	1	6636476	6636476	+	Splice_Site	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:6636475_6636475CT>C	uc001ant.3	+	4	1357	c.1261_splice	c.e4-1	p.L421_splice	TAS1R1_uc001anu.3_Splice_Site_p.L167_splice|TAS1R1_uc021ofp.1_Intron	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	Homo sapiens taste receptor, type 1, member 1 (TAS1R1), transcript variant 2, mRNA.	421					sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			NS(2)|central_nervous_system(1)|endometrium(2)|large_intestine(7)|lung(13)|ovary(1)|skin(1)|urinary_tract(2)	29	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		TTTCTTTCAGCTTTTGGAGCA	0.512												
TNFRSF9	3604	broad.mit.edu	37	1	7998254	7998254	+	Splice_Site	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:7998253_7998253CT>C	uc001aot.3	-	5	607	c.346_splice	c.e5+1	p.G116_splice		NM_001561	NP_001552	Q07011	TNR9_HUMAN	Homo sapiens tumor necrosis factor receptor superfamily, member 9 (TNFRSF9), mRNA.	116					induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity	p.G116S(1)		NS(1)|endometrium(2)|kidney(1)|large_intestine(5)|lung(5)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	19	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		GCAAACGTACCTTTTTTTGTC	0.408												
ERRFI1	54206	broad.mit.edu	37	1	8074255	8074255	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:8074254_8074254GT>G	uc001aoz.3	-	3	654	c.405_405AC>C	c.(403-405)aacfs	p.N135fs	ERRFI1_uc001apa.1_Frame_Shift_Del_p.N60fs	NM_018948	NP_061821	Q9UJM3	ERRFI_HUMAN	Homo sapiens ERBB receptor feedback inhibitor 1 (ERRFI1), mRNA.	135					lung alveolus development|lung epithelium development|lung vasculature development|negative regulation of epidermal growth factor receptor activity|negative regulation of protein autophosphorylation|regulation of keratinocyte differentiation|response to stress|skin morphogenesis	cytoplasm|extrinsic to internal side of plasma membrane|nucleus	Rho GTPase activator activity|protein kinase binding			breast(1)|endometrium(2)|large_intestine(3)|liver(3)|lung(3)|ovary(1)|prostate(1)|skin(2)	16	Ovarian(185;0.06)|all_lung(157;0.151)	all_epithelial(116;1.76e-16)|all_lung(118;3.66e-05)|Lung NSC(185;0.000163)|Renal(390;0.000469)|Colorectal(325;0.0033)|Breast(348;0.0044)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.33e-70)|GBM - Glioblastoma multiforme(8;8.05e-37)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;6.9e-06)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.000985)|READ - Rectum adenocarcinoma(331;0.0642)		GGGAAGGGGAGTTTTTTATGG	0.502												
PRDM2	7799	broad.mit.edu	37	1	14108560	14108560	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:14108559_14108559GA>G	uc001avi.3	+	7	5125	c.4269_4269GA>G	c.(4267-4269)aagfs	p.K1423fs	PRDM2_uc001avg.3_Intron|PRDM2_uc001avh.3_Frame_Shift_Del_p.K1423fs|PRDM2_uc001avk.3_Frame_Shift_Del_p.K1222fs|PRDM2_uc009voe.3_Intron|PRDM2_uc009vof.3_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	Homo sapiens PR domain containing 2, with ZNF domain (PRDM2), transcript variant 1, mRNA.	1423	Arg/Lys-rich (basic).					Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(16)|lung(20)|ovary(3)|prostate(3)|skin(1)|urinary_tract(2)	55	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		ATGCATTGAAGAAAAAAAATC	0.393												
EPHA2	1969	broad.mit.edu	37	1	16462199	16462199	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:16462198_16462198CG>C	uc001aya.2	-	5	1535	c.1380_1380CG>G	c.(1378-1380)ccgfs	p.P460fs	EPHA2_uc010oca.2_Frame_Shift_Del_p.P460fs	NM_004431	NP_004422	P29317	EPHA2_HUMAN	Homo sapiens EPH receptor A2 (EPHA2), mRNA.	460	Fibronectin type-III 2.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding	p.P460fs*33(1)		NS(1)|biliary_tract(1)|breast(3)|central_nervous_system(3)|cervix(2)|endometrium(1)|kidney(1)|large_intestine(6)|lung(12)|ovary(2)|pancreas(1)|prostate(3)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	42		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	TCTGCTGCGGCGGGGGGATGC	0.662												
TCEA3	6920	broad.mit.edu	37	1	23710913	23710914	+	Splice_Site	DEL	GA	GA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:23710912_23710913TGA>T	uc021oig.1	-	10	1102	c.967_splice	c.e10-1	p.V323_splice	TCEA3_uc009vqm.2_Intron	NM_003196	NP_003187	O75764	TCEA3_HUMAN	Homo sapiens transcription elongation factor A (SII), 3 (TCEA3), mRNA.	323					regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	nucleus	DNA binding|translation elongation factor activity|zinc ion binding			endometrium(1)|kidney(1)|large_intestine(1)|lung(3)|urinary_tract(1)	7		Colorectal(325;3.46e-05)|Lung NSC(340;4.16e-05)|all_lung(284;6.68e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.0054)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.6e-25)|Colorectal(126;8.32e-08)|COAD - Colon adenocarcinoma(152;4.29e-06)|GBM - Glioblastoma multiforme(114;9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00424)|STAD - Stomach adenocarcinoma(196;0.0145)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0963)|LUSC - Lung squamous cell carcinoma(448;0.198)		TGTCTGCACCTGAGAGAGAGAA	0.495												
MYOM3	127294	broad.mit.edu	37	1	24411132	24411132	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:24411131_24411131TA>T	uc001bin.4	-	16	1962	c.1799_splice	c.e16-1	p.A600_splice	MYOM3_uc001bim.4_Splice_Site_p.A257_splice|MYOM3_uc001bio.3_Splice_Site_p.A600_splice|MYOM3_uc001bip.1_Intron	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	Homo sapiens myomesin family, member 3 (MYOM3), mRNA.	600										NS(2)|breast(2)|central_nervous_system(1)|endometrium(5)|kidney(6)|large_intestine(3)|lung(40)|ovary(2)|prostate(1)|skin(4)|urinary_tract(2)	68		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GGAGGGTAGCTAAAAAATAGA	0.542												
ARID1A	8289	broad.mit.edu	37	1	27057924	27057924	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:27057923_27057923AC>A	uc001bmv.1	+	2	2004	c.1631_1631AC>A	c.(1630-1632)cacfs	p.H544fs	ARID1A_uc001bmt.1_Frame_Shift_Del_p.H544fs|ARID1A_uc001bmu.1_Frame_Shift_Del_p.H544fs|ARID1A_uc001bmw.1_Frame_Shift_Del_p.H161fs	NM_006015	NP_006006	O14497	ARI1A_HUMAN	Homo sapiens AT rich interactive domain 1A (SWI-like) (ARID1A), transcript variant 1, mRNA.	544					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	SWI/SNF complex|nBAF complex|npBAF complex	DNA binding|protein binding	p.Q543*(3)|p.Q543fs*79(1)	ARID1A/MAST2_ENST00000361297(2)	NS(1)|autonomic_ganglia(1)|biliary_tract(1)|breast(13)|central_nervous_system(6)|cervix(2)|endometrium(56)|haematopoietic_and_lymphoid_tissue(8)|kidney(10)|large_intestine(41)|liver(31)|lung(34)|ovary(130)|pancreas(18)|prostate(8)|skin(9)|stomach(14)|upper_aerodigestive_tract(4)|urinary_tract(24)	411		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		ACACAGCAGCACCCCCAGAGC	0.647			"""Mis, N, F, S, D"""		"""clear cell ovarian carcinoma, RCC"""							
SPOCD1	90853	broad.mit.edu	37	1	32256573	32256573	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:32256572_32256572TC>T	uc001bts.1	-	15	3341	c.3283_3283GA>A	c.(3283-3285)aggfs	p.R1095fs	SPOCD1_uc001btr.1_3'UTR|SPOCD1_uc001btu.3_Frame_Shift_Del_p.R1082fs|SPOCD1_uc001btv.3_Frame_Shift_Del_p.R575fs	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	Homo sapiens SPOC domain containing 1 (SPOCD1), mRNA.	1095					transcription, DNA-dependent					NS(1)|breast(1)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(8)|liver(1)|lung(7)|ovary(6)|prostate(1)|skin(3)|stomach(1)|urinary_tract(2)	37		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		GGCCAGAGCCTCCCCCTGCCT	0.667												
KIAA1522	57648	broad.mit.edu	37	1	33233495	33233495	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:33233494_33233494AC>A	uc001bvu.1	+	1	386	c.342_342AC>A	c.(340-342)cgafs	p.R114fs	KIAA1522_uc010ohm.1_Frame_Shift_Del_p.R66fs|KIAA1522_uc001bvv.2_Frame_Shift_Del_p.R55fs|KIAA1522_uc010ohn.1_Frame_Shift_Del_p.R55fs	NM_020888	NP_065939	Q9P206	K1522_HUMAN	Homo sapiens KIAA1522 (KIAA1522), transcript variant 1, mRNA.	55			S -> P (in dbSNP:rs3737994).							breast(1)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(2)|lung(5)|ovary(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	24		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				CCAGTGGGCGACCCCCCCACC	0.617												
CSMD2	114784	broad.mit.edu	37	1	34128586	34128586	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:34128585_34128585AG>A	uc001bxm.1	-	25	4337	c.4160_4160CT>T	c.(4159-4161)ctgfs	p.L1387fs	CSMD2_uc001bxn.1_Frame_Shift_Del_p.L1347fs|CSMD2_uc001bxo.1_Frame_Shift_Del_p.L260fs	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	Homo sapiens CUB and Sushi multiple domains 2 (CSMD2), mRNA.	1347	Sushi 8.					integral to membrane|plasma membrane	protein binding			NS(5)|breast(5)|central_nervous_system(3)|cervix(2)|endometrium(20)|haematopoietic_and_lymphoid_tissue(4)|kidney(9)|large_intestine(43)|lung(114)|ovary(8)|pancreas(1)|prostate(6)|skin(20)|upper_aerodigestive_tract(5)|urinary_tract(1)	246		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTCCTTGGGCAGGGCCGGGCC	0.577												
DLGAP3	58512	broad.mit.edu	37	1	35365852	35365852	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:35365851_35365851AC>A	uc001byc.3	-	1	1131	c.1131_1131GT>T	c.(1129-1131)ggtfs	p.G377fs		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	Homo sapiens discs, large (Drosophila) homolog-associated protein 3 (DLGAP3), mRNA.	377					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				central_nervous_system(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(6)|lung(23)|ovary(4)|prostate(3)|skin(3)|urinary_tract(1)	46		Myeloproliferative disorder(586;0.0393)				CGGTGGGGTAACCCCCCCAGT	0.607												
SFPQ	6421	broad.mit.edu	37	1	35657105	35657106	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:35657104_35657105CAA>C	uc001bys.3	-	1	947_948	c.854_855TTG>G	c.(853-855)ttgfs	p.L285fs		NM_005066	NP_005057	P23246	SFPQ_HUMAN	Homo sapiens splicing factor proline/glutamine-rich (SFPQ), mRNA.	285					DNA recombination|DNA repair|alternative nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|RNA binding|nucleotide binding|protein binding		SFPQ/TFE3(6)	NS(1)|breast(2)|endometrium(2)|kidney(1)|large_intestine(10)|lung(4)|ovary(1)|prostate(1)|skin(2)|urinary_tract(1)	25		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.196)				CAGGCCTCCTCAAGAGAGACAA	0.406			T	TFE3	papillary renal cell							
ZMYM4	9202	broad.mit.edu	37	1	35836080	35836080	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:35836079_35836079TA>T	uc001byt.3	+	6	1112	c.1032_1032TA>T	c.(1030-1032)tgtfs	p.C344fs	ZMYM4_uc009vuu.3_Frame_Shift_Del_p.C312fs|ZMYM4_uc001byu.3_Frame_Shift_Del_p.C20fs|ZMYM4_uc009vuv.3_Frame_Shift_Del_p.C83fs|AF119915_uc001byv.2_5'Flank	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	Homo sapiens zinc finger, MYM-type 4 (ZMYM4), mRNA.	344					multicellular organismal development		DNA binding|zinc ion binding			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(7)|kidney(6)|large_intestine(13)|lung(16)|ovary(2)|prostate(3)|skin(2)	54		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GTTCTGGTTGTAAAAAAATCC	0.478												
GNL2	29889	broad.mit.edu	37	1	38056409	38056409	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:38056408_38056408AT>A	uc001cbk.3	-	3	446	c.283_283AT>T	c.(283-285)tttfs	p.F95fs	GNL2_uc010oif.1_5'UTR|GNL2_uc009vve.2_Frame_Shift_Del_p.F95fs	NM_013285	NP_037417	Q13823	NOG2_HUMAN	Homo sapiens guanine nucleotide binding protein-like 2 (nucleolar) (GNL2), mRNA.	95					ribosome biogenesis	nucleolus	GTP binding|GTPase activity|protein binding			breast(1)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(6)|lung(8)|ovary(2)|prostate(3)|skin(1)|urinary_tract(1)	30		Myeloproliferative disorder(586;0.0393)				TCCTCTTGAAATTTTTGTAAT	0.378												
MACF1	23499	broad.mit.edu	37	1	39951359	39951359	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:39951358_39951358AG>A	uc021olw.1	+	63	17709	c.17709_17709AG>A	c.(17707-17709)gcafs	p.A5903fs	MACF1_uc021ols.1_Frame_Shift_Del_p.A5392fs|MACF1_uc021olt.1_Frame_Shift_Del_p.A5395fs|MACF1_uc001cde.2_Frame_Shift_Del_p.A309fs|MACF1_uc001cdg.3_3'UTR|MACF1_uc001cdh.3_3'UTR	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	Homo sapiens microtubule-actin crosslinking factor 1 (MACF1), transcript variant 1, mRNA.	7353					Golgi to plasma membrane protein transport|Wnt receptor signaling pathway|cell cycle arrest|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|wound healing	Golgi apparatus|microtubule|ruffle membrane	ATPase activity|actin filament binding|calcium ion binding|microtubule binding			breast(11)|central_nervous_system(5)|endometrium(18)|haematopoietic_and_lymphoid_tissue(1)|kidney(11)|large_intestine(36)|lung(78)|ovary(12)|prostate(2)|skin(9)|stomach(2)|upper_aerodigestive_tract(8)|urinary_tract(10)	203	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GCAGCGCTGCAGGGGGCCAAG	0.577												
HIVEP3	59269	broad.mit.edu	37	1	42048868	42048868	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:42048867_42048867AG>A	uc001cgz.4	-	3	2815	c.1602_1602CT>T	c.(1600-1602)cctfs	p.P534fs	HIVEP3_uc001cha.4_Frame_Shift_Del_p.P534fs|HIVEP3_uc001cgy.3_Non-coding_Transcript	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	Homo sapiens human immunodeficiency virus type I enhancer binding protein 3 (HIVEP3), transcript variant 1, mRNA.	534	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			NS(2)|breast(3)|central_nervous_system(5)|endometrium(13)|kidney(3)|large_intestine(13)|lung(33)|ovary(4)|prostate(5)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	85	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GGAGAGGCACAGGGGGGGCGG	0.597												
B4GALT2	8704	broad.mit.edu	37	1	44456113	44456114	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:44456112_44456113C>CG	uc010okl.2	+	6	1274_1275	c.1198_1199C>CG	c.(1198-1200)cggfs	p.R400fs	B4GALT2_uc001clg.3_Frame_Shift_Ins_p.R371fs|B4GALT2_uc001clh.3_Frame_Shift_Ins_p.R305fs|B4GALT2_uc001cli.3_Frame_Shift_Ins_p.R371fs|CCDC24_uc001clj.3_5'Flank|CCDC24_uc009vxc.3_5'Flank	NM_030587	NP_085076	O60909	B4GT2_HUMAN	Homo sapiens UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 (B4GALT2), transcript variant 1, mRNA.	371					post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	N-acetyllactosamine synthase activity|beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|lactose synthase activity|metal ion binding			endometrium(4)|large_intestine(3)|lung(5)|ovary(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	17	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			N-Acetyl-D-glucosamine(DB00141)	GTGGCCCCCTCGGGGCTGACAC	0.619												
SLC6A9	6536	broad.mit.edu	37	1	44467092	44467094	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:44467091_44467093TGAA>T	uc001cll.3	-	8	1580_1582	c.1388_1390TTCA>A	c.(1387-1392)ttcatg>tAtg	p.463_464FM>Y	SLC6A9_uc009vxe.2_In_Frame_Del_p.319_320FM>Y|SLC6A9_uc010okm.1_In_Frame_Del_p.390_391FM>Y|SLC6A9_uc001clm.3_In_Frame_Del_p.409_410FM>Y|SLC6A9_uc009vxd.3_Non-coding_Transcript|SLC6A9_uc010okn.2_In_Frame_Del_p.394_395FM>Y|SLC6A9_uc010oko.2_In_Frame_Del_p.279_280FM>Y|SLC6A9_uc001cln.3_In_Frame_Del_p.390_391FM>Y|SLC6A9_uc010okp.1_Non-coding_Transcript	NM_201649	NP_964012	P48067	SC6A9_HUMAN	Homo sapiens solute carrier family 6 (neurotransmitter transporter, glycine), member 9 (SLC6A9), transcript variant 2, mRNA.	463						integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			endometrium(3)|large_intestine(8)|lung(7)|ovary(1)|skin(1)|urinary_tract(2)	22	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	AGGATAAGCATGAAGAAGAAGAG	0.635												
PLK3	1263	broad.mit.edu	37	1	45270026	45270026	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:45270025_45270025GC>G	uc001cmn.3	+	11	1457	c.1357_1357GC>G	c.(1357-1359)gccfs	p.A453fs		NM_004073	NP_004064	Q9H4B4	PLK3_HUMAN	Homo sapiens polo-like kinase 3 (PLK3), mRNA.	453						membrane	ATP binding|protein binding|protein serine/threonine kinase activity			endometrium(4)|large_intestine(2)|lung(8)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	19	Acute lymphoblastic leukemia(166;0.155)					ACAGAACCCGGCCCCCCTGGC	0.622												
PRDX1	5052	broad.mit.edu	37	1	45981482	45981482	+	Splice_Site	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:45981481_45981481TG>T	uc001coc.3	-	3	422	c.107_splice	c.e3-1	p.G36_splice	PRDX1_uc001cob.3_Splice_Site_p.G36_splice|PRDX1_uc001coa.3_Splice_Site_p.G36_splice|PRDX1_uc021omw.1_Splice_Site_p.G36_splice	NM_181696	NP_859048	Q06830	PRDX1_HUMAN	Homo sapiens peroxiredoxin 1 (PRDX1), transcript variant 2, mRNA.	36	Thioredoxin.				cell proliferation|cell redox homeostasis|hydrogen peroxide catabolic process|skeletal system development	melanosome|mitochondrion|nucleus	protein binding|thioredoxin peroxidase activity			breast(1)|endometrium(3)|kidney(1)|large_intestine(1)|lung(5)|skin(1)	12	Acute lymphoblastic leukemia(166;0.155)					CATATTTTCCTGGGGGGAAAA	0.403												
IPP	3652	broad.mit.edu	37	1	46206587	46206587	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:46206586_46206586TA>T	uc001cou.3	-	2	978	c.711_711TA>A	c.(709-711)ttafs	p.L237fs	IPP_uc001cos.4_Frame_Shift_Del_p.L237fs	NM_005897	NP_005888	Q9Y573	IPP_HUMAN	Homo sapiens intracisternal A particle-promoted polypeptide (IPP), transcript variant 1, mRNA.	237						actin cytoskeleton|cytoplasm	actin binding			central_nervous_system(1)|endometrium(1)|kidney(4)|large_intestine(6)|lung(5)|ovary(1)|stomach(2)	20	Acute lymphoblastic leukemia(166;0.155)					CTATATACTTTAAAAGTCTCT	0.343												
CACHD1	57685	broad.mit.edu	37	1	65157117	65157117	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:65157116_65157116AC>A	uc001dbo.1	+	26	3649	c.3544_3544AC>A	c.(3544-3546)accfs	p.T1182fs	CACHD1_uc001dbp.1_Frame_Shift_Del_p.T937fs|CACHD1_uc001dbq.1_Frame_Shift_Del_p.T937fs|CACHD1_uc010opa.1_Frame_Shift_Del_p.T426fs|CACHD1_uc021ooi.1_Non-coding_Transcript	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	Homo sapiens cache domain containing 1 (CACHD1), mRNA.	1233					calcium ion transport	integral to membrane		p.Q1185fs*23(1)		breast(4)|endometrium(3)|kidney(3)|large_intestine(20)|lung(14)|ovary(2)|pancreas(1)|prostate(5)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	55						AGACCTGGATACCCCCCCTCA	0.552												
C1orf173	127254	broad.mit.edu	37	1	75072466	75072467	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:75072465_75072466ACT>A	uc001dgg.3	-	9	1527_1528	c.1308_1309AGT>T	c.(1306-1311)gagtatfs	p.E436fs	CR627203_uc001dgh.3_Intron|C1orf173_uc001dgi.4_Frame_Shift_Del_p.E230fs	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	Homo sapiens chromosome 1 open reading frame 173 (C1orf173), mRNA.	436	Glu-rich.									NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(23)|lung(123)|ovary(3)|prostate(10)|skin(10)|stomach(1)|upper_aerodigestive_tract(5)	184						GGTATCACATACTCTCTCTCTT	0.401												
USP33	23032	broad.mit.edu	37	1	78178969	78178969	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:78178968_78178968TA>T	uc001dht.3	-	21	2656	c.2309_splice	c.e21-1	p.G770_splice	USP33_uc001dhs.3_Splice_Site_p.G491_splice|USP33_uc001dhu.3_Splice_Site_p.G739_splice|USP33_uc001dhv.3_Splice_Site_p.G575_splice|USP33_uc001dhw.3_Splice_Site_p.G762_splice	NM_015017	NP_963918	Q8TEY7	UBP33_HUMAN	Homo sapiens ubiquitin specific peptidase 33 (USP33), transcript variant 1, mRNA.	770	DUSP 1.				axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	VCB complex|perinuclear region of cytoplasm	G-protein-coupled receptor binding|cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			breast(1)|central_nervous_system(2)|endometrium(4)|kidney(4)|large_intestine(10)|lung(19)|ovary(1)|prostate(2)|urinary_tract(1)	44						GAGGAACACCTAAAAAAATAT	0.289												
CDC7	8317	broad.mit.edu	37	1	91977476	91977476	+	Frame_Shift_Del	DEL	A	A	-	rs13447504	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:91977475_91977475GA>G	uc001doe.3	+	5	732	c.567_567GA>G	c.(565-567)ctgfs	p.L189fs	CDC7_uc001dof.3_Frame_Shift_Del_p.L189fs|CDC7_uc010osw.2_Frame_Shift_Del_p.L161fs|CDC7_uc009wdc.3_Frame_Shift_Del_p.L189fs|CDC7_uc009wdd.3_5'Flank	NM_003503	NP_003494	O00311	CDC7_HUMAN	Homo sapiens cell division cycle 7 homolog (S. cerevisiae) (CDC7), transcript variant 1, mRNA.	189	Protein kinase.				DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|cell cycle checkpoint|cell division|positive regulation of cell proliferation|regulation of S phase	cytoplasm|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(1)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(4)|lung(8)|ovary(2)|prostate(1)|stomach(2)	23		all_lung(203;0.0165)|Lung NSC(277;0.0562)		all cancers(265;0.00108)|Epithelial(280;0.0184)|KIRC - Kidney renal clear cell carcinoma(1967;0.124)		ATAGGCGCCTGAAAAAGTAAG	0.274												
CDC14A	8556	broad.mit.edu	37	1	100889837	100889837	+	Frame_Shift_Del	DEL	C	C	-	rs138415707		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:100889836_100889836AC>A	uc001dtf.2	+	4	856	c.368_368AC>A	c.(367-369)aacfs	p.N123fs	CDC14A_uc009web.2_Non-coding_Transcript|CDC14A_uc010oui.1_Frame_Shift_Del_p.N65fs|CDC14A_uc001dte.4_Frame_Shift_Del_p.N123fs|CDC14A_uc009wed.1_5'UTR|CDC14A_uc001dtg.4_Frame_Shift_Del_p.N123fs|CDC14A_uc009wee.3_Frame_Shift_Del_p.N123fs	NM_033312	NP_201569	Q9UNH5	CC14A_HUMAN	Homo sapiens CDC14 cell division cycle 14 homolog A (S. cerevisiae) (CDC14A), transcript variant 2, mRNA.	123	A.				cell cycle|cell division|cell proliferation	centrosome|nucleus|spindle	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			breast(1)|endometrium(5)|kidney(6)|large_intestine(6)|lung(10)|skin(2)|urinary_tract(1)	31		all_epithelial(167;3.71e-06)|all_lung(203;0.00097)|Lung NSC(277;0.001)		Epithelial(280;0.0676)|all cancers(265;0.127)|COAD - Colon adenocarcinoma(174;0.201)|Lung(183;0.227)|Colorectal(144;0.241)		TCTGGCTCAAACCCCCCCTAT	0.403												
RBM15	64783	broad.mit.edu	37	1	110888168	110888169	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:110888167_110888168G>GT	uc001dzl.1	+	1	2953_2954	c.2870_2871G>GT	c.(2869-2871)ggtfs	p.G957fs	RBM15_uc001dzm.1_Intron|BC069739_uc001dzn.1_Non-coding_Transcript	NM_022768	NP_073605	Q96T37	RBM15_HUMAN	Homo sapiens RNA binding motif protein 15 (RBM15), transcript variant 1, mRNA.	957					interspecies interaction between organisms	nucleus	RNA binding|nucleotide binding|protein binding			ovary(3)	3		all_cancers(81;2.89e-06)|all_epithelial(167;2.96e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Breast(1374;0.0634)		BRCA - Breast invasive adenocarcinoma(282;0.000224)|Epithelial(280;0.000476)|Kidney(133;0.000539)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|all cancers(265;0.00144)|Lung(183;0.0238)|Colorectal(144;0.103)|LUSC - Lung squamous cell carcinoma(189;0.135)		ACAGGGTTTGGTTTTCAGATAG	0.386			T	MKL1	acute megakaryocytic leukemia							
SLC16A1	6566	broad.mit.edu	37	1	113471890	113471890	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:113471889_113471889TG>T	uc001ecx.3	-	1	874	c.42_42CA>A	c.(40-42)ccafs	p.P14fs	SLC16A1_uc001ecy.3_Frame_Shift_Del_p.P14fs|SLC16A1_uc001ecz.3_Frame_Shift_Del_p.P14fs	NM_001166496	NP_003042	P53985	MOT1_HUMAN	Homo sapiens solute carrier family 16, member 1 (monocarboxylic acid transporter 1) (SLC16A1), transcript variant 2, mRNA.	14					blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	integral to membrane|membrane fraction|plasma membrane	mevalonate transmembrane transporter activity|protein binding|secondary active monocarboxylate transmembrane transporter activity|symporter activity			breast(2)|central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(4)|lung(8)|skin(1)|urinary_tract(1)	20	Lung SC(450;0.246)	all_cancers(81;7.6e-08)|all_epithelial(167;3.82e-07)|all_lung(203;3.07e-05)|Lung NSC(69;5.51e-05)|Prostate(1639;0.00232)		Epithelial(280;7.31e-13)|all cancers(265;5.1e-10)|Kidney(133;5.29e-07)|KIRC - Kidney renal clear cell carcinoma(1967;8.63e-06)|OV - Ovarian serous cystadenocarcinoma(397;1.48e-05)|BRCA - Breast invasive adenocarcinoma(282;0.003)|LUSC - Lung squamous cell carcinoma(189;0.008)|Lung(183;0.00948)|Colorectal(144;0.0325)|COAD - Colon adenocarcinoma(174;0.0643)	Pyruvic acid(DB00119)	AGCCTCCATCTGGGGGGGTGT	0.428												
SYCP1	6847	broad.mit.edu	37	1	115454180	115454180	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:115454179_115454179TA>T	uc001efr.3	+	17	1714	c.1505_1505TA>T	c.(1504-1506)ctafs	p.L502fs	SYCP1_uc010owt.2_Non-coding_Transcript|SYCP1_uc001efq.3_Frame_Shift_Del_p.L502fs|SYCP1_uc009wgw.3_Frame_Shift_Del_p.L502fs	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	Homo sapiens synaptonemal complex protein 1 (SYCP1), mRNA.	502				IQLTAITTSEQYYSKEVKDLKTELENEK -> YSYCHYHKW TVLPKRGQRPKLSSKRE (in Ref. 2; BAA22586).	cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding	p.L502I(1)	RGS22/SYCP1(2)	NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(17)|lung(20)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	48	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTTAAAGATCTAAAAACTGAG	0.264												
CD58	965	broad.mit.edu	37	1	117078662	117078663	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:117078661_117078662A>AT	uc001egm.3	-	2	674_675	c.553_554T>AT	c.(553-555)atafs	p.I185fs	CD58_uc001egn.3_Non-coding_Transcript|CD58_uc010owy.2_Frame_Shift_Ins_p.I185fs|CD58_uc001ego.1_Intron|CD58_uc001egp.4_Frame_Shift_Ins_p.I185fs	NM_001779	NP_001770	P19256	LFA3_HUMAN	Homo sapiens CD58 molecule (CD58), transcript variant 1, mRNA.	185	Ig-like C2-type.				blood coagulation|cell-cell adhesion|leukocyte migration	anchored to membrane|integral to plasma membrane	protein binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(2)|lung(3)|urinary_tract(1)	9	Lung SC(450;0.225)	all_cancers(81;0.000363)|all_lung(203;0.000118)|all_epithelial(167;0.000149)|Lung NSC(69;0.000577)		Lung(183;0.0086)|LUSC - Lung squamous cell carcinoma(189;0.0528)|Colorectal(144;0.0775)|all cancers(265;0.109)|Epithelial(280;0.118)|COAD - Colon adenocarcinoma(174;0.121)		AGTACACTGTATTTTTTGTGGA	0.342												
TRIM45	80263	broad.mit.edu	37	1	117663624	117663624	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:117663623_117663623TC>T	uc001egz.2	-	0	789	c.201_201GA>A	c.(199-201)ggafs	p.G67fs	TRIM45_uc009whe.2_Frame_Shift_Del_p.G67fs	NM_025188	NP_079464	Q9H8W5	TRI45_HUMAN	Homo sapiens tripartite motif containing 45 (TRIM45), transcript variant 1, mRNA.	67						cytoplasm|nucleus	zinc ion binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(8)|lung(9)|prostate(1)	23	Lung SC(450;0.225)	all_cancers(81;0.000979)|all_lung(203;7.65e-05)|all_epithelial(167;0.000134)|Lung NSC(69;0.000389)		Lung(183;0.0537)|Colorectal(144;0.172)|LUSC - Lung squamous cell carcinoma(189;0.187)		TGTCAGAGTCTCCCCCTCGGA	0.542												
TCHH	7062	broad.mit.edu	37	1	152082769	152082769	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:152082768_152082768TC>T	uc009wne.1	-	2	3197	c.2925_2925GA>A	c.(2923-2925)ggafs	p.G975fs	TCHH_uc001ezp.2_Frame_Shift_Del_p.G975fs	NM_007113	NP_009044	Q07283	TRHY_HUMAN	Homo sapiens trichohyalin (TCHH), mRNA.	975	10 X 30 AA tandem repeats.				keratinization	cytoskeleton	calcium ion binding	p.G975R(1)		NS(2)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(20)|kidney(9)|large_intestine(16)|lung(33)|ovary(3)|pancreas(1)|prostate(4)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(4)	105	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ccggttcctctcccagcagct	0.567												
ISG20L2	81875	broad.mit.edu	37	1	156694105	156694105	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:156694104_156694104GC>G	uc001fps.1	-	1	1045	c.784_784GC>C	c.(784-786)catfs	p.H262fs	ISG20L2_uc001fpt.1_Frame_Shift_Del_p.H262fs	NM_030980	NP_112242	Q9H9L3	I20L2_HUMAN	Homo sapiens interferon stimulated exonuclease gene 20kDa-like 2 (ISG20L2), mRNA.	262	Exonuclease.				ribosome biogenesis	nucleolus	exonuclease activity|nucleic acid binding|protein binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(1)|kidney(2)|large_intestine(2)|lung(6)|ovary(1)|skin(1)	16	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGGATGGCATGCCCCACCACT	0.532												
INSRR	3645	broad.mit.edu	37	1	156814367	156814367	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:156814366_156814366TC>T	uc010pht.2	-	13	2924	c.2625_2625GA>A	c.(2623-2625)ggafs	p.G875fs	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	Homo sapiens insulin receptor-related receptor (INSRR), mRNA.	875	Fibronectin type-III 3.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			breast(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(8)|lung(13)|ovary(7)|prostate(3)|skin(4)|stomach(1)|upper_aerodigestive_tract(2)	42	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCAGGTGGACTCCCCCAAACT	0.572												
ARHGEF11	9826	broad.mit.edu	37	1	156914828	156914828	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:156914827_156914827AG>A	uc001fqo.3	-	28	3895	c.2855_2855CT>T	c.(2854-2856)ctgfs	p.L952fs	ARHGEF11_uc010phu.2_Frame_Shift_Del_p.L368fs|ARHGEF11_uc001fqn.3_Frame_Shift_Del_p.L992fs	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Homo sapiens Rho guanine nucleotide exchange factor (GEF) 11 (ARHGEF11), transcript variant 1, mRNA.	952					G-protein coupled receptor protein signaling pathway|Rho protein signal transduction|actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of Rho protein signal transduction|regulation of cell growth|striated muscle contraction	Golgi apparatus|cytosol|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			NS(1)|breast(3)|central_nervous_system(3)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(15)|lung(27)|ovary(4)|pancreas(2)|pleura(1)|prostate(4)|skin(7)|stomach(1)|urinary_tract(2)	81	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CTCTGCTGCCAGGGGGTTGCT	0.567												
CD5L	922	broad.mit.edu	37	1	157805670	157805672	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:157805669_157805671ACTT>A	uc001frk.4	-	2	473_475	c.330_332AAGT>T	c.(328-333)gaagtt>gaTt	p.110_111EV>D		NM_005894	NP_005885	O43866	CD5L_HUMAN	Homo sapiens CD5 molecule-like (CD5L), mRNA.	110	SRCR 1.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			NS(1)|breast(4)|central_nervous_system(1)|endometrium(6)|kidney(2)|large_intestine(9)|lung(25)|ovary(1)|prostate(1)|stomach(1)|urinary_tract(1)	52	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			ACAATCATAAACTTCTTCTTGCT	0.498												
OR6K6	128371	broad.mit.edu	37	1	158725437	158725437	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:158725436_158725436AT>A	uc001fsw.1	+	0	831	c.831_831AT>A	c.(829-831)ctafs	p.L277fs		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	Homo sapiens olfactory receptor, family 6, subfamily K, member 6 (OR6K6), mRNA.	277					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(1)|large_intestine(5)|lung(17)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	29	all_hematologic(112;0.0378)					TGTTCTTGCTATTTTTTGGCA	0.458												
SLAMF8	56833	broad.mit.edu	37	1	159799703	159799703	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:159799702_159799702CG>C	uc001fue.4	+	1	297	c.87_87CG>C	c.(85-87)gtcfs	p.V29fs		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	Homo sapiens SLAM family member 8 (SLAMF8), mRNA.	29						integral to membrane				endometrium(2)|large_intestine(4)|lung(6)	12	all_hematologic(112;0.0597)					TGAGCAAAGTCGGGGGCTCGG	0.602												
ILDR2	387597	broad.mit.edu	37	1	166925999	166925999	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:166925998_166925998AT>A	uc001gdx.2	-	2	527	c.471_471AT>T	c.(469-471)aatfs	p.N157fs		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	Homo sapiens immunoglobulin-like domain containing receptor 2 (ILDR2), mRNA.	157	Ig-like V-type.					integral to membrane				NS(3)|breast(1)|kidney(2)|large_intestine(2)|lung(9)|ovary(1)|skin(2)|upper_aerodigestive_tract(2)	22						CTGAGTCCTCATTTTTCCCCT	0.448												
FMO3	2328	broad.mit.edu	37	1	171080111	171080111	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:171080110_171080110GA>G	uc001ghi.3	+	5	910	c.799_799GA>G	c.(799-801)gaafs	p.E267fs	FMO3_uc001ghh.3_Frame_Shift_Del_p.E267fs|FMO3_uc010pmb.2_Frame_Shift_Del_p.E247fs|FMO3_uc010pmc.2_Frame_Shift_Del_p.E204fs	NM_001002294	NP_008825	P31513	FMO3_HUMAN	Homo sapiens flavin containing monooxygenase 3 (FMO3), transcript variant 2, mRNA.	267					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			endometrium(1)|kidney(1)|large_intestine(12)|lung(12)|skin(1)|stomach(2)|urinary_tract(2)	31	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATTCAAGCATGAAAACTATGG	0.438												
PIGC	5279	broad.mit.edu	37	1	172411559	172411559	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:172411558_172411558CA>C	uc021pey.1	-	0	205	c.205_205TG>G	c.(205-207)gtgfs	p.V69fs	PIGC_uc001gii.1_Intron|C1orf105_uc001gik.3_Intron|PIGC_uc001gin.3_Frame_Shift_Del_p.V69fs|PIGC_uc001gio.3_Frame_Shift_Del_p.V69fs	NM_153747	NP_714969	Q92535	PIGC_HUMAN	Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class C (PIGC), transcript variant 1, mRNA.	69					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			breast(1)|endometrium(1)|kidney(1)|lung(1)	4						CAGATAACCACAAAAACACAA	0.468												
PDC	5132	broad.mit.edu	37	1	186413213	186413214	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:186413212_186413213C>CA	uc001gsa.3	-	3	712_713	c.639_640G>TG	c.(637-642)tttgctfs	p.F213fs	MIR548F1_uc021pgf.1_Intron|PDC_uc001grz.3_Frame_Shift_Ins_p.F161fs	NM_002597	NP_072098	P20941	PHOS_HUMAN	Homo sapiens phosducin (PDC), transcript variant 1, mRNA.	213					G-protein coupled receptor protein signaling pathway|phototransduction|visual perception	actin cytoskeleton|cytosol|nucleus|photoreceptor inner segment|photoreceptor outer segment	phospholipase inhibitor activity			central_nervous_system(1)|endometrium(1)|large_intestine(2)|lung(1)|prostate(1)|skin(1)	7		Breast(1374;1.53e-05)		KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.0129)		ACATCCCCAGCAAAAAATTCTT	0.381												
CACNA1S	779	broad.mit.edu	37	1	201019593	201019594	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:201019592_201019593C>CG	uc001gvv.3	-	33	4392_4393	c.4165_4166G>CG	c.(4165-4167)cggfs	p.R1389fs		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	Homo sapiens calcium channel, voltage-dependent, L type, alpha 1S subunit (CACNA1S), mRNA.	1389	Dihydropyridine binding (By similarity).|Phenylalkylamine binding (By similarity).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			NS(2)|breast(4)|central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(13)|large_intestine(19)|lung(37)|ovary(6)|prostate(3)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(2)	102					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GGACCAGTCCCGGGTGAGGTAG	0.530												
MDM4	4194	broad.mit.edu	37	1	204499948	204499948	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:204499947_204499947TA>T	uc001hba.3	+	4	453	c.287_splice	c.e4+2	p.S96_splice	MDM4_uc001hbd.2_Splice_Site|MDM4_uc010pqw.2_Splice_Site|MDM4_uc010pqx.2_Splice_Site|MDM4_uc001hay.2_Splice_Site_p.S96_splice|MDM4_uc021phx.1_Intron|MDM4_uc001hbb.3_Splice_Site|MDM4_uc010pqy.2_Splice_Site|MDM4_uc001hbc.3_Splice_Site|MDM4_uc009xbe.1_Splice_Site	NM_002393	NP_002384	O15151	MDM4_HUMAN	Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant 1, mRNA.	96	SWIB.				G0 to G1 transition|apoptosis|cell proliferation|cellular response to hypoxia|negative regulation of apoptosis|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of protein catabolic process|negative regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization	nucleus	enzyme binding|zinc ion binding			central_nervous_system(2)|endometrium(1)|large_intestine(3)|lung(4)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)	16	all_cancers(21;0.00146)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.112)|all_epithelial(62;0.118)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;3.15e-47)|all cancers(3;3.56e-32)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|Epithelial(59;0.143)|BRCA - Breast invasive adenocarcinoma(75;0.143)			AGACCCAAGGTAAAAACAGTG	0.398			A		"""GBM, bladder, retinoblastoma"""							
CR1L	1379	broad.mit.edu	37	1	207850873	207850873	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:207850872_207850872TA>T	uc001hga.4	+	1	357	c.236_236TA>T	c.(235-237)ctafs	p.L79fs	CR1L_uc001hfz.2_Non-coding_Transcript|CR1L_uc001hgb.1_Non-coding_Transcript	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	Homo sapiens complement component (3b/4b) receptor 1-like (CR1L), mRNA.	79	Sushi 1.					cytoplasm|extracellular region|membrane				endometrium(1)|kidney(1)|large_intestine(2)|lung(15)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	22						ATCATCTGCCTAAAAAACTCA	0.438												
PLXNA2	5362	broad.mit.edu	37	1	208315787	208315788	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:208315786_208315787T>TG	uc001hgz.3	-	3	2151_2152	c.1393_1394A>CA	c.(1393-1395)catfs	p.H465fs		NM_025179	NP_079455	O75051	PLXA2_HUMAN	Homo sapiens plexin A2 (PLXNA2), mRNA.	465	Sema.				axon guidance	integral to membrane|intracellular|plasma membrane		p.H465fs*57(2)		NS(1)|breast(3)|central_nervous_system(5)|cervix(1)|endometrium(15)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(9)|liver(1)|lung(28)|ovary(3)|prostate(5)|skin(2)|upper_aerodigestive_tract(3)	80				OV - Ovarian serous cystadenocarcinoma(81;0.199)		GACCCCACCATGGGGGGGACCG	0.594												
NSL1	25936	broad.mit.edu	37	1	212911845	212911845	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:212911844_212911844GT>G	uc001hjn.3	-	5	786	c.752_752AC>C	c.(751-753)accfs	p.T251fs	NSL1_uc001hjm.3_3'UTR|NSL1_uc010pti.2_Frame_Shift_Del_p.T210fs	NM_015471	NP_056286	Q96IY1	NSL1_HUMAN	Homo sapiens NSL1, MIND kinetochore complex component, homolog (S. cerevisiae) (NSL1), transcript variant 1, mRNA.	251					cell division|chromosome segregation|mitotic prometaphase	MIS12/MIND type complex|cytosol|nucleus	protein binding			breast(1)|kidney(1)|large_intestine(1)|lung(2)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	9				OV - Ovarian serous cystadenocarcinoma(81;0.00597)|all cancers(67;0.00893)|GBM - Glioblastoma multiforme(131;0.0514)|Epithelial(68;0.102)		CATGTCAGAGGTTTTCCTGGA	0.403												
SUSD4	55061	broad.mit.edu	37	1	223437982	223437982	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:223437981_223437981CA>C	uc001hnx.3	-	3	1349	c.715_715TG>G	c.(715-717)gctfs	p.A239fs	SUSD4_uc001hny.4_Frame_Shift_Del_p.A239fs|SUSD4_uc010puw.2_Frame_Shift_Del_p.A79fs|SUSD4_uc001hnz.2_Frame_Shift_Del_p.A239fs|SUSD4_uc010pux.1_Frame_Shift_Del_p.A168fs	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	Homo sapiens sushi domain containing 4 (SUSD4), transcript variant 1, mRNA.	239	Sushi 3.					integral to membrane				cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(5)|liver(1)|lung(5)|skin(1)	17				GBM - Glioblastoma multiforme(131;0.0611)		CCTTCCAGAGCAAGGCACCGG	0.453												
AHCTF1	25909	broad.mit.edu	37	1	247062817	247062817	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:247062816_247062816TA>T	uc001ibv.2	-	11	1557	c.1460_splice	c.e11-1	p.D487_splice	AHCTF1_uc009xgs.1_Splice_Site	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	Homo sapiens AT hook containing transcription factor 1 (AHCTF1), mRNA.	478	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mRNA transport|mitotic prometaphase|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			NS(1)|breast(6)|cervix(3)|endometrium(8)|kidney(6)|large_intestine(12)|liver(2)|lung(21)|ovary(5)|prostate(1)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(2)	74	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			AAGTGGCATCTAAAAAAAAGA	0.308												
ZNF124	7678	broad.mit.edu	37	1	247319909	247319909	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr1:247319908_247319908GT>G	uc001ick.3	-	3	1155	c.1016_1016AC>C	c.(1015-1017)actfs	p.T339fs	ZNF124_uc001ici.3_Intron|ZNF124_uc001icj.1_Frame_Shift_Del_p.T277fs	NM_003431	NP_003422	Q15973	ZN124_HUMAN	Homo sapiens zinc finger protein 124 (ZNF124), transcript variant 1, mRNA.	339					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			biliary_tract(1)|breast(1)|endometrium(2)|kidney(3)|large_intestine(2)|lung(3)|urinary_tract(2)	14	all_cancers(71;5.07e-05)|all_epithelial(71;8.72e-06)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0488)|Lung NSC(105;0.053)		OV - Ovarian serous cystadenocarcinoma(106;0.00739)			TCCAGTATGAGTTTTTTTATG	0.368												
KIDINS220	57498	broad.mit.edu	37	2	8871749	8871749	+	Frame_Shift_Del	DEL	G	G	-	rs34141362		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:8871748_8871748AG>A	uc002qzc.2	-	29	4600	c.4418_4418CT>T	c.(4417-4419)ctgfs	p.L1473fs	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Frame_Shift_Del_p.L1374fs|KIDINS220_uc002qzb.2_Frame_Shift_Del_p.L327fs	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	Homo sapiens kinase D-interacting substrate, 220kDa (KIDINS220), mRNA.	1473					activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				NS(1)|breast(1)|central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(11)|lung(25)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	60	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GATAGGATCCAGGGGGGAAGC	0.468												
KIDINS220	57498	broad.mit.edu	37	2	8926140	8926140	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:8926139_8926139GT>G	uc002qzc.2	-	16	2143	c.1961_1961AC>C	c.(1960-1962)acafs	p.T654fs	KIDINS220_uc010yiv.1_Frame_Shift_Del_p.T420fs|KIDINS220_uc002qzd.2_Frame_Shift_Del_p.T612fs|KIDINS220_uc010yiw.1_Frame_Shift_Del_p.T655fs	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	Homo sapiens kinase D-interacting substrate, 220kDa (KIDINS220), mRNA.	654	KAP NTPase.				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				NS(1)|breast(1)|central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(11)|lung(25)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	60	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GAGACAACATGTTTTTTTCCA	0.318												
RAD51AP2	729475	broad.mit.edu	37	2	17698737	17698737	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:17698736_17698736GT>G	uc002rcl.1	-	0	971	c.947_947AC>C	c.(946-948)actfs	p.T316fs	RAD51AP2_uc010exn.1_Frame_Shift_Del_p.T307fs	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	Homo sapiens RAD51 associated protein 2 (RAD51AP2), mRNA.	316										endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(10)|liver(1)|lung(17)|ovary(1)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	49	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CGCTTCTACAGTTTTTTTATC	0.328												
GEN1	348654	broad.mit.edu	37	2	17941334	17941334	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:17941333_17941333CA>C	uc002rct.2	+	1	196	c.123_123CA>C	c.(121-123)gtcfs	p.V41fs	SMC6_uc010exo.3_Intron|GEN1_uc010yjs.1_Frame_Shift_Del_p.V41fs|GEN1_uc002rcu.2_Frame_Shift_Del_p.V41fs	NM_182625	NP_872431	Q17RS7	GEN_HUMAN	Homo sapiens Gen endonuclease homolog 1 (Drosophila) (GEN1), transcript variant 1, mRNA.	41	N-domain.				DNA repair	nucleus	DNA binding|endonuclease activity|metal ion binding			breast(6)|central_nervous_system(1)|kidney(1)|large_intestine(3)|ovary(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	16	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CACAGACAGTCAAAAAAATGA	0.418								Homologous recombination				
ADCY3	109	broad.mit.edu	37	2	25062829	25062829	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:25062828_25062828GC>G	uc010ykm.2	-	5	1468	c.1269_1269GC>C	c.(1267-1269)ggcfs	p.G423fs	ADCY3_uc002rfr.4_Frame_Shift_Del_p.G34fs|ADCY3_uc002rfs.4_Frame_Shift_Del_p.G423fs	NM_004036	NP_004027	O60266	ADCY3_HUMAN	Homo sapiens adenylate cyclase 3 (ADCY3), mRNA.	423					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			NS(1)|breast(5)|endometrium(7)|kidney(1)|large_intestine(7)|lung(14)|ovary(3)|prostate(4)|skin(2)	44	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					GGCCCAGGACGCCCCCCAGCA	0.632												
IFT172	26160	broad.mit.edu	37	2	27682634	27682634	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:27682633_27682633TC>T	uc002rku.3	-	23	2636	c.2585_2585GA>A	c.(2584-2586)gacfs	p.D862fs		NM_015662	NP_056477	Q9UG01	IF172_HUMAN	Homo sapiens intraflagellar transport 172 homolog (Chlamydomonas) (IFT172), mRNA.	862					cilium assembly	cilium	binding			central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(17)|lung(17)|ovary(1)|pancreas(1)|upper_aerodigestive_tract(1)	43	Acute lymphoblastic leukemia(172;0.155)					CACCAGGTGGTCCCCCCATGC	0.532												
XDH	7498	broad.mit.edu	37	2	31598297	31598299	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:31598296_31598298TGAA>T	uc002rnv.1	-	14	1629_1631	c.1550_1552TTCA>A	c.(1549-1554)ttcaag>tAag	p.517_518FK>*		NM_000379	NP_000370	P47989	XDH_HUMAN	Homo sapiens xanthine dehydrogenase (XDH), mRNA.	517				FFF -> LLL (in Ref. 3; AAA75287).	purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			breast(3)|central_nervous_system(2)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(13)|lung(31)|ovary(1)|pancreas(1)|prostate(3)|skin(9)|urinary_tract(1)	74	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AGGTAGAACTTGAAGAAGAAGCT	0.591												
FAM98A	25940	broad.mit.edu	37	2	33810704	33810704	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:33810703_33810703GT>G	uc002rpa.1	-	6	856	c.782_782AC>C	c.(781-783)actfs	p.T261fs	FAM98A_uc010yne.1_Frame_Shift_Del_p.T66fs|FAM98A_uc010ynd.1_Frame_Shift_Del_p.T92fs|FAM98A_uc002roz.1_Frame_Shift_Del_p.T99fs	NM_015475	NP_056290	Q8NCA5	FA98A_HUMAN	Homo sapiens family with sequence similarity 98, member A (FAM98A), mRNA.	262										NS(1)|breast(1)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(3)|lung(12)|ovary(1)|prostate(1)|skin(1)	24	all_hematologic(175;0.115)					AGAAATAGTAGTTTTAGGGGA	0.413												
SIX2	10736	broad.mit.edu	37	2	45233498	45233498	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:45233497_45233497CG>C	uc002ruo.3	-	1	981	c.688_688CG>G	c.(688-690)gcafs	p.A230fs		NM_016932	NP_058628	Q9NPC8	SIX2_HUMAN	Homo sapiens SIX homeobox 2 (SIX2), mRNA.	230						nucleus	sequence-specific DNA binding transcription factor activity			endometrium(6)|large_intestine(3)|lung(8)|pancreas(1)|prostate(2)|upper_aerodigestive_tract(2)	22		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AGGAGCAGTGCGGGGCTGGAT	0.701												
MSH2	4436	broad.mit.edu	37	2	47656978	47656978	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:47656977_47656977CA>C	uc002rvy.1	+	6	1241	c.1173_1173CA>C	c.(1171-1173)gccfs	p.A391fs	MSH2_uc010yoh.1_Frame_Shift_Del_p.A325fs|MSH2_uc002rvz.3_Frame_Shift_Del_p.A391fs|MSH2_uc010fbg.2_Frame_Shift_Del_p.A201fs	NM_000251	NP_000242	P43246	MSH2_HUMAN	Homo sapiens mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) (MSH2), mRNA.	391					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|Y-form DNA binding|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding	p.0?(2)|p.?(2)		NS(1)|breast(4)|central_nervous_system(2)|cervix(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(9)|kidney(5)|large_intestine(50)|lung(18)|ovary(5)|prostate(2)|skin(3)|small_intestine(1)|stomach(2)|urinary_tract(1)	112		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ACCGACTTGCCAAGAAGTTTC	0.378			"""D, Mis, N, F, S"""		"""colorectal, endometrial, ovarian"""	"""colorectal, endometrial, ovarian"""		Mismatch excision repair (MMR)	Turcot syndrome;Muir-Torre syndrome;Lynch syndrome;Constitutional Mismatch Repair Deficiency Syndrome			
CEP68	23177	broad.mit.edu	37	2	65305008	65305011	+	Frame_Shift_Del	DEL	AAGA	AAGA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:65305007_65305010TAAGA>T	uc002sdl.4	+	4	2227_2230	c.2013_2016TAAGA>T	c.(2011-2016)tttaagfs	p.F671fs	CEP68_uc010yqb.1_Intron|CEP68_uc002sdk.4_Frame_Shift_Del_p.F534fs|CEP68_uc010yqc.2_Frame_Shift_Del_p.F671fs	NM_015147	NP_055962	Q76N32	CEP68_HUMAN	Homo sapiens centrosomal protein 68kDa (CEP68), mRNA.	671					centrosome organization	centrosome				breast(1)|endometrium(6)|kidney(8)|large_intestine(5)|lung(8)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	32						TTAAGCAATTTAAGAAAGATATAG	0.407												
ZNF638	27332	broad.mit.edu	37	2	71626730	71626730	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:71626729_71626729TG>T	uc002shx.3	+	12	2864	c.2541_2541TG>T	c.(2539-2541)actfs	p.T847fs	ZNF638_uc010yqw.1_Frame_Shift_Del_p.T426fs|ZNF638_uc002shz.3_Frame_Shift_Del_p.T847fs|ZNF638_uc002shy.3_Frame_Shift_Del_p.T847fs|ZNF638_uc002sia.3_Frame_Shift_Del_p.T847fs|ZNF638_uc002sib.1_Frame_Shift_Del_p.T847fs|ZNF638_uc002sic.3_5'UTR	NM_014497	NP_055312	Q14966	ZN638_HUMAN	Homo sapiens zinc finger protein 638 (ZNF638), transcript variant 1, mRNA.	847					RNA splicing	cytoplasm|nuclear speck	RNA binding|double-stranded DNA binding|nucleotide binding|zinc ion binding			breast(4)|central_nervous_system(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(16)|lung(28)|ovary(2)|pancreas(2)|prostate(1)|skin(2)|urinary_tract(1)	63						CCAAAAAGACTGGGAATGTCA	0.343												
DYSF	8291	broad.mit.edu	37	2	71839797	71839797	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:71839796_71839796GC>G	uc010fen.3	+	38	4388	c.4247_4247GC>G	c.(4246-4248)tgcfs	p.C1416fs	DYSF_uc010fei.3_Frame_Shift_Del_p.C1415fs|DYSF_uc010feh.3_Frame_Shift_Del_p.C1384fs|DYSF_uc002sig.4_Frame_Shift_Del_p.C1384fs|DYSF_uc010yqx.2_Non-coding_Transcript|DYSF_uc010feg.3_Frame_Shift_Del_p.C1429fs|DYSF_uc010fee.3_Frame_Shift_Del_p.C1398fs|DYSF_uc010fef.3_Frame_Shift_Del_p.C1415fs|DYSF_uc002sie.3_Frame_Shift_Del_p.C1398fs|DYSF_uc010feo.3_Frame_Shift_Del_p.C1430fs|DYSF_uc010fej.3_Frame_Shift_Del_p.C1385fs|DYSF_uc010fel.3_Frame_Shift_Del_p.C1385fs|DYSF_uc010fem.3_Frame_Shift_Del_p.C1399fs|DYSF_uc002sif.3_Frame_Shift_Del_p.C1399fs|DYSF_uc010fek.3_Frame_Shift_Del_p.C1416fs|DYSF_uc010yqy.2_Frame_Shift_Del_p.C279fs|DYSF_uc010yqz.2_Frame_Shift_Del_p.C138fs	NM_001130987	NP_001124459	O75923	DYSF_HUMAN	Homo sapiens dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) (DYSF), transcript variant 1, mRNA.	1398						cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			autonomic_ganglia(2)|breast(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(22)|lung(57)|ovary(3)|pancreas(1)|prostate(2)|skin(6)|upper_aerodigestive_tract(3)|urinary_tract(2)	111						GAGCTCTACTGCCCCCCCATC	0.617												
DYSF	8291	broad.mit.edu	37	2	71906295	71906295	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:71906294_71906294CT>C	uc010fen.3	+	52	6133	c.5992_5992CT>C	c.(5992-5994)cttfs	p.L1998fs	DYSF_uc010fei.3_Frame_Shift_Del_p.L1976fs|DYSF_uc010feh.3_Frame_Shift_Del_p.L1966fs|DYSF_uc002sig.4_Frame_Shift_Del_p.L1945fs|DYSF_uc010yqx.2_Non-coding_Transcript|DYSF_uc010feg.3_Frame_Shift_Del_p.L1990fs|DYSF_uc010fee.3_Frame_Shift_Del_p.L1980fs|DYSF_uc010fef.3_Frame_Shift_Del_p.L1997fs|DYSF_uc002sie.3_Frame_Shift_Del_p.L1959fs|DYSF_uc010feo.3_Frame_Shift_Del_p.L1991fs|DYSF_uc010fej.3_Frame_Shift_Del_p.L1967fs|DYSF_uc010fel.3_Frame_Shift_Del_p.L1946fs|DYSF_uc010fem.3_Frame_Shift_Del_p.L1981fs|DYSF_uc002sif.3_Frame_Shift_Del_p.L1960fs|DYSF_uc010fek.3_Frame_Shift_Del_p.L1977fs|DYSF_uc010yqy.2_Frame_Shift_Del_p.L840fs|DYSF_uc010yqz.2_Frame_Shift_Del_p.L720fs	NM_001130987	NP_001124459	O75923	DYSF_HUMAN	Homo sapiens dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) (DYSF), transcript variant 1, mRNA.	1959						cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			autonomic_ganglia(2)|breast(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(22)|lung(57)|ovary(3)|pancreas(1)|prostate(2)|skin(6)|upper_aerodigestive_tract(3)|urinary_tract(2)	111						GTTTGTGTCCCTTTTTGAGCA	0.537												
WBP1	23559	broad.mit.edu	37	2	74687410	74687411	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:74687409_74687410A>AC	uc002slj.2	+	3	614_615	c.411_412A>AC	c.(409-414)ccacccfs	p.P137fs	INO80B_uc002sli.2_Non-coding_Transcript|WBP1_uc002sll.2_Non-coding_Transcript	NM_012477	NP_036609	Q96G27	WBP1_HUMAN	Homo sapiens WW domain binding protein 1 (WBP1), mRNA.	137							WW domain binding			endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(1)|ovary(1)|urinary_tract(1)	8						CAGGCACACCACCCCCCCCTTA	0.584												
TCF7L1	83439	broad.mit.edu	37	2	85532498	85532498	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:85532497_85532497AC>A	uc002soy.3	+	7	1185	c.960_960AC>A	c.(958-960)gcafs	p.A320fs		NM_031283	NP_112573	Q9HCS4	TF7L1_HUMAN	Homo sapiens transcription factor 7-like 1 (T-cell specific, HMG-box) (TCF7L1), mRNA.	320	Pro-rich.				Wnt receptor signaling pathway|chromatin organization|regulation of Wnt receptor signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|lung(3)|skin(4)|upper_aerodigestive_tract(1)	18						AGGAACCGGCACCCCCCAGCC	0.662												
RGPD2	729857	broad.mit.edu	37	2	88082493	88082493	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:88082492_88082492TA>T	uc010fhc.2	-	19	4089	c.4051_4051TA>A	c.(4051-4053)agtfs	p.S1351fs	RGPD2_uc002ssm.1_Frame_Shift_Del_p.S608fs|RGPD2_uc021vkn.1_Frame_Shift_Del_p.S1343fs	NM_001078170	NP_001071638	Q68DN6	RGPD1_HUMAN	Homo sapiens RANBP2-like and GRIP domain containing 2 (RGPD2), mRNA.	1343	RanBD1 2.				intracellular transport		binding			breast(1)|pancreas(1)	2						GCCATGTGACTAAAAACAACT	0.358												
EIF2AK3	9451	broad.mit.edu	37	2	88879087	88879087	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:88879086_88879086GT>G	uc002stc.4	-	10	2138	c.1836_1836AC>C	c.(1834-1836)aacfs	p.N612fs		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	Homo sapiens eukaryotic translation initiation factor 2-alpha kinase 3 (EIF2AK3), mRNA.	612	Protein kinase.				ER overload response|activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						CATCTACTTTGTTTTTAGCTT	0.373												
PROM2	150696	broad.mit.edu	37	2	95953207	95953209	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:95953206_95953208AGAG>A	uc002suk.3	+	19	2371_2373	c.2238_2240AGAG>A	c.(2236-2241)agagag>agAg	p.E748del	PROM2_uc002suh.2_In_Frame_Del_p.E748del|PROM2_uc002sui.3_In_Frame_Del_p.E748del|PROM2_uc002suj.3_In_Frame_Del_p.E402del|PROM2_uc002sul.3_In_Frame_Del_p.E274del|PROM2_uc002sum.3_Non-coding_Transcript	NM_001165977	NP_653308	Q8N271	PROM2_HUMAN	Homo sapiens prominin 2 (PROM2), transcript variant 2, mRNA.	748						apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				breast(1)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(8)|lung(12)|ovary(3)|prostate(1)|skin(1)|urinary_tract(1)	32						CCTGGGTGAGAGAGGAGGTGAGT	0.640												
NCAPH	23397	broad.mit.edu	37	2	97025921	97025921	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:97025920_97025920CA>C	uc002svz.1	+	10	1481	c.1397_1397CA>C	c.(1396-1398)acafs	p.T466fs	NCAPH_uc010fhv.1_Frame_Shift_Del_p.T455fs|NCAPH_uc010yum.1_Frame_Shift_Del_p.T442fs|NCAPH_uc010yun.1_Frame_Shift_Del_p.T330fs	NM_015341	NP_056156	Q15003	CND2_HUMAN	Homo sapiens non-SMC condensin I complex, subunit H (NCAPH), mRNA.	466					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|microtubule cytoskeleton|nucleus				haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(11)|ovary(1)|prostate(1)|skin(2)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	28		Ovarian(717;0.0221)				AAGAAGAGTACAAAAAAAGAT	0.328												
EIF5B	9669	broad.mit.edu	37	2	99977650	99977650	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:99977649_99977649TA>T	uc002tab.3	+	3	469	c.285_285TA>T	c.(283-285)gatfs	p.D95fs		NM_015904	NP_056988	O60841	IF2P_HUMAN	Homo sapiens eukaryotic translation initiation factor 5B (EIF5B), mRNA.	95	Poly-Lys.				regulation of translational initiation	cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			breast(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(13)|ovary(2)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	31						CCTCAAAAGATAAAAAAAAGA	0.303												
MERTK	10461	broad.mit.edu	37	2	112760715	112760717	+	In_Frame_Del	DEL	TGT	TGT	-	rs140681547		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:112760714_112760716ATGT>A	uc002thk.1	+	11	1858_1860	c.1736_1738ATGT>A	c.(1735-1740)gatgtt>gAtt	p.V581del	MERTK_uc002thl.1_In_Frame_Del_p.V405del	NM_006343	NP_006334	Q12866	MERTK_HUMAN	Homo sapiens c-mer proto-oncogene tyrosine kinase (MERTK), mRNA.	581					cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			breast(1)|endometrium(3)|kidney(2)|large_intestine(6)|liver(1)|lung(18)|pancreas(1)|skin(1)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(10)	46						AAACTAGAAGATGTTGTGATTGA	0.335												
RBM43	375287	broad.mit.edu	37	2	152107765	152107765	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:152107764_152107764AT>A	uc002txh.3	-	3	878	c.730_730AT>T	c.(730-732)ttcfs	p.F244fs		NM_198557	NP_940959	Q6ZSC3	RBM43_HUMAN	Homo sapiens RNA binding motif protein 43 (RBM43), mRNA.	244							RNA binding|nucleotide binding			endometrium(2)|large_intestine(3)|lung(2)|ovary(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.131)		AGAATGTGGAATTTTTTCAGT	0.383												
PRPF40A	55660	broad.mit.edu	37	2	153520288	153520288	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:153520287_153520287TA>T	uc002tyh.4	-	19	1994	c.1972_splice	c.e19-1	p.D658_splice	PRPF40A_uc002tyg.4_Splice_Site_p.D114_splice|PRPF40A_uc010zcd.1_Splice_Site_p.D609_splice	NM_017892	NP_060362	O75400	PR40A_HUMAN	Homo sapiens PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) (PRPF40A), mRNA.	685	FF 4.				RNA splicing|mRNA processing	nuclear matrix|nuclear speck	protein binding			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(9)|prostate(1)|urinary_tract(1)	21						TCCTTTATCCTAAAAAAAAGA	0.254												
GALNT3	2591	broad.mit.edu	37	2	166613688	166613688	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:166613687_166613687CT>C	uc010fph.1	-	6	1649	c.1262_1262AG>G	c.(1261-1263)agcfs	p.S421fs	GALNT3_uc010fpi.1_Frame_Shift_Del_p.S421fs	NM_004482	NP_004473	Q14435	GALT3_HUMAN	Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) (GALNT3), mRNA.	421					protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	Golgi cisterna membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	calcium ion binding|manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			NS(1)|central_nervous_system(2)|endometrium(2)|kidney(1)|large_intestine(3)|lung(6)|ovary(1)|prostate(3)|skin(1)	20						GCTATGAGGGCTTTTGCTGCG	0.393												
SCN9A	6335	broad.mit.edu	37	2	167144965	167144966	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:167144964_167144965C>CT	uc010fpl.3	-	9	1637_1638	c.1296_1297G>AG	c.(1294-1299)aaagagfs	p.K432fs	BC051759_uc002udp.3_Intron|SCN9A_uc002udr.1_Frame_Shift_Ins_p.K303fs|SCN9A_uc002uds.1_Frame_Shift_Ins_p.K303fs|SCN9A_uc002udt.1_Frame_Shift_Ins_p.K303fs	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	Homo sapiens sodium channel, voltage-gated, type IX, alpha subunit (SCN9A), mRNA.	432						voltage-gated sodium channel complex	voltage-gated sodium channel activity			NS(1)|breast(5)|central_nervous_system(6)|endometrium(6)|kidney(3)|large_intestine(27)|lung(38)|ovary(6)|prostate(8)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(2)	108					Lamotrigine(DB00555)|Lidocaine(DB00281)	TCTTCTTGCTCTTTTTTAAGAC	0.391												
UBR3	130507	broad.mit.edu	37	2	170865361	170865361	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:170865360_170865360TA>T	uc010zdi.2	+	28	4277	c.4277_4277TA>T	c.(4276-4278)atafs	p.I1426fs	UBR3_uc002ufr.4_Non-coding_Transcript|UBR3_uc010fqa.3_Frame_Shift_Del_p.I247fs|UBR3_uc002uft.4_Frame_Shift_Del_p.I283fs|UBR3_uc010zdj.2_Frame_Shift_Del_p.I88fs	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	Homo sapiens ubiquitin protein ligase E3 component n-recognin 3 (putative) (UBR3), mRNA.	1426					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(2)|cervix(1)|endometrium(5)|kidney(2)|large_intestine(9)|liver(1)|lung(8)|ovary(1)|prostate(3)|stomach(1)	33						ATGAAAGATATAAAAAATACC	0.289												
DCAF17	80067	broad.mit.edu	37	2	172334538	172334538	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:172334537_172334537TA>T	uc002ugx.3	+	11	1550	c.1223_1223TA>T	c.(1222-1224)gtafs	p.V408fs	DCAF17_uc010zdq.2_Non-coding_Transcript|DCAF17_uc010zdr.2_Non-coding_Transcript|DCAF17_uc010fqf.2_Frame_Shift_Del_p.V341fs|DCAF17_uc010fqg.3_Frame_Shift_Del_p.V128fs	NM_025000	NP_079276	Q5H9S7	DCA17_HUMAN	Homo sapiens DDB1 and CUL4 associated factor 17 (DCAF17), transcript variant 1, mRNA.	408						CUL4 RING ubiquitin ligase complex|integral to membrane|nucleolus				endometrium(1)|kidney(2)|large_intestine(3)|lung(10)|prostate(1)	17						GGACGGGTGGTAAAAAAAAGT	0.368												
HOXD8	3234	broad.mit.edu	37	2	176995458	176995458	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:176995457_176995457TC>T	uc002uko.3	+	0	990	c.363_363TC>T	c.(361-363)cctfs	p.P121fs	AX747372_uc002ukl.1_5'Flank|AX747372_uc002ukm.1_5'Flank|HOXD8_uc002ukn.3_Intron|HOXD8_uc002ukp.3_Frame_Shift_Del_p.P121fs	NM_019558	NP_062458	P13378	HXD8_HUMAN	Homo sapiens homeobox D8 (HOXD8), transcript variant 1, mRNA.	121	Poly-Pro.				anterior/posterior axis specification, embryo	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|large_intestine(2)|lung(5)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.195)	Colorectal(32;0.0224)|READ - Rectum adenocarcinoma(9;0.0556)		cgccgccacctcccccCTGCG	0.692												
TTN	7273	broad.mit.edu	37	2	179505298	179505298	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:179505297_179505297CT>C	uc021vsy.1	-	169	33215	c.32990_32990AG>G	c.(32989-32991)aggfs	p.R10997fs	MIR548N_uc021vsx.1_Intron|TTN_uc021vsz.1_Frame_Shift_Del_p.R4692fs|TTN_uc021vta.1_Frame_Shift_Del_p.R4625fs|TTN_uc021vtb.1_Frame_Shift_Del_p.R4500fs|TTN_uc010fre.1_Frame_Shift_Del_p.R875fs|TTN_uc002umw.1_Non-coding_Transcript|TTN_uc002umx.1_Frame_Shift_Del_p.R212fs	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	Homo sapiens titin (TTN), transcript variant N2-A, mRNA.	11924	Glu-rich.|Pro-rich.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTCCTTTCCCTTTTTGTAAC	0.313												
DNAJC10	54431	broad.mit.edu	37	2	183595815	183595815	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:183595814_183595814CT>C	uc002uow.1	+	8	1200	c.785_785CT>C	c.(784-786)actfs	p.T262fs	DNAJC10_uc002uox.1_Non-coding_Transcript|DNAJC10_uc002uoy.1_Non-coding_Transcript|DNAJC10_uc002uoz.1_Frame_Shift_Del_p.T262fs|DNAJC10_uc010fro.1_Non-coding_Transcript	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 10 (DNAJC10), mRNA.	262					ER-associated protein catabolic process|apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			breast(3)|endometrium(1)|kidney(4)|large_intestine(7)|lung(15)|ovary(1)|skin(1)	32			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			TGGCTGATCACTTTTTGTTCA	0.308												
DNAH7	56171	broad.mit.edu	37	2	196722321	196722321	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:196722320_196722320AT>A	uc002utj.4	-	43	8296	c.8195_8195AT>T	c.(8194-8196)attfs	p.I2732fs		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	Homo sapiens dynein, axonemal, heavy chain 7 (DNAH7), mRNA.	2732	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity	p.I2732fs*15(1)		NS(4)|breast(2)|endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(15)|large_intestine(28)|liver(3)|lung(100)|ovary(4)|prostate(5)|skin(26)|upper_aerodigestive_tract(2)|urinary_tract(3)	205						GAAATCCTCAATTTTTTTCCC	0.433												
RAPH1	65059	broad.mit.edu	37	2	204305798	204305798	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:204305797_204305797TG>T	uc002vad.3	-	13	2341	c.2116_2116CA>A	c.(2116-2118)aatfs	p.N706fs		NM_213589	NP_998754	Q70E73	RAPH1_HUMAN	Homo sapiens Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 (RAPH1), transcript variant 1, mRNA.	706					cell-matrix adhesion|signal transduction	cytoplasm|cytoskeleton|filopodium|lamellipodium|nucleus|plasma membrane				breast(5)|central_nervous_system(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(7)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	32						ACAACTCCATTGGGGGGTACC	0.612												
RAPH1	65059	broad.mit.edu	37	2	204326092	204326092	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:204326091_204326091GT>G	uc002vad.3	-	5	1076	c.851_851AC>C	c.(850-852)acafs	p.T284fs	RAPH1_uc002vae.3_Frame_Shift_Del_p.T336fs|RAPH1_uc002vaf.3_Frame_Shift_Del_p.T336fs	NM_213589	NP_998754	Q70E73	RAPH1_HUMAN	Homo sapiens Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 (RAPH1), transcript variant 1, mRNA.	284	Ras-associating.				cell-matrix adhesion|signal transduction	cytoplasm|cytoskeleton|filopodium|lamellipodium|nucleus|plasma membrane				breast(5)|central_nervous_system(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(7)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	32						CACCATCATTGTTTTAGAACT	0.408												
ZDBF2	57683	broad.mit.edu	37	2	207172526	207172526	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:207172525_207172525TA>T	uc002vbp.2	+	4	3523	c.3273_3273TA>T	c.(3271-3273)gttfs	p.V1091fs		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	Homo sapiens zinc finger, DBF-type containing 2 (ZDBF2), mRNA.	1091							nucleic acid binding|zinc ion binding			endometrium(4)|kidney(5)|large_intestine(28)|lung(50)|ovary(4)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	95						AGGAAGCGGTTAAAAAAATAG	0.313												
CRYGD	1421	broad.mit.edu	37	2	209025577	209025577	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:209025576_209025576AC>A	uc002vcq.4	-	2	494	c.477_477GT>T	c.(475-477)ggtfs	p.G159fs	CRYGD_uc021vvu.1_Intron	NM_014617	NP_055432	P07320	CRGD_HUMAN	Homo sapiens crystallin, gamma A (CRYGA), mRNA.	159	Beta/gamma crystallin 'Greek key' 4.				cellular response to reactive oxygen species|visual perception	soluble fraction	protein binding|structural constituent of eye lens			breast(1)|endometrium(1)|lung(3)	5				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.0858)|Lung(261;0.133)		TGGCATCTGCACCCCCCCAGT	0.527												
CCDC108	255101	broad.mit.edu	37	2	219892999	219892999	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:219892998_219892998AG>A	uc002vjl.1	-	11	1860	c.1776_1776CT>T	c.(1774-1776)cctfs	p.P592fs	CCDC108_uc010fwa.1_Frame_Shift_Del_p.P35fs|CCDC108_uc010zkp.1_Frame_Shift_Del_p.P581fs|CCDC108_uc010zkq.1_Frame_Shift_Del_p.P527fs	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	Homo sapiens coiled-coil domain containing 108 (CCDC108), transcript variant 1, mRNA.	592						integral to membrane	structural molecule activity			autonomic_ganglia(1)|breast(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(18)|liver(1)|lung(34)|ovary(2)|pancreas(1)|prostate(6)|skin(5)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	80		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCAGGATGTCAGGGGGGTAGA	0.622												
IRS1	3667	broad.mit.edu	37	2	227662352	227662352	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:227662351_227662351CG>C	uc021vxn.1	-	0	1104	c.1104_1104CG>G	c.(1102-1104)ccgfs	p.P368fs	IRS1_uc002voh.4_Frame_Shift_Del_p.P368fs	NM_005544	NP_005535	P35568	IRS1_HUMAN	Homo sapiens insulin receptor substrate 1 (IRS1), mRNA.	368	Ser-rich.				fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	SH2 domain binding|insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|transmembrane receptor protein tyrosine kinase adaptor activity			autonomic_ganglia(1)|breast(2)|central_nervous_system(4)|endometrium(5)|kidney(4)|large_intestine(10)|lung(33)|ovary(6)|pancreas(1)|prostate(1)|urinary_tract(2)	69		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		TGTGGTTGAGCGGGGGGTGCA	0.706											OREG0015248	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
COL4A3	1285	broad.mit.edu	37	2	228125809	228125809	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:228125808_228125808TC>T	uc002vom.2	+	19	1287	c.1125_1125TC>T	c.(1123-1125)ggtfs	p.G375fs	BC035052_uc002voq.1_Intron|AK056332_uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	Homo sapiens collagen, type IV, alpha 3 (Goodpasture antigen) (COL4A3), mRNA.	375	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			NS(4)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(24)|ovary(1)|pancreas(1)|prostate(1)|skin(6)|upper_aerodigestive_tract(2)|urinary_tract(1)	55		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GTCCCAGTGGTCCCCCCGGAG	0.388												
SPHKAP	80309	broad.mit.edu	37	2	228973586	228973586	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:228973585_228973585AT>A	uc002vpq.2	-	2	256	c.209_209AT>T	c.(208-210)attfs	p.I70fs	SPHKAP_uc002vpp.2_Frame_Shift_Del_p.I70fs|SPHKAP_uc010zlx.1_Frame_Shift_Del_p.I70fs	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	Homo sapiens SPHK1 interactor, AKAP domain containing (SPHKAP), transcript variant 1, mRNA.	70						cytoplasm	protein binding			NS(5)|breast(5)|central_nervous_system(2)|endometrium(11)|haematopoietic_and_lymphoid_tissue(3)|kidney(12)|large_intestine(25)|lung(86)|ovary(6)|pancreas(1)|prostate(6)|skin(17)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	185		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TACAAAACCAATTTGGCAGGG	0.458												
DIS3L2	129563	broad.mit.edu	37	2	233194613	233194613	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:233194612_233194612AC>A	uc010fxz.3	+	14	2105	c.1829_1829AC>A	c.(1828-1830)cacfs	p.H610fs	DIS3L2_uc002vsm.4_Non-coding_Transcript|DIS3L2_uc002vso.3_Non-coding_Transcript	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	Homo sapiens DIS3 mitotic control homolog (S. cerevisiae)-like 2 (DIS3L2), mRNA.	610							RNA binding|exonuclease activity|ribonuclease activity			breast(2)|central_nervous_system(1)|endometrium(5)|kidney(3)|large_intestine(7)|lung(18)|ovary(1)|prostate(2)|urinary_tract(1)	40		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		CTGCGCCGGCACCCCCCGCCC	0.642												
UGT1A1	54658	broad.mit.edu	37	2	234590941	234590941	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:234590940_234590940AT>A	uc002vut.3	+	0	357	c.357_357AT>A	c.(355-357)ttafs	p.L119fs	UGT1A1_uc010zmv.1_Intron|UGT1A1_uc002vup.3_Intron|UGT1A1_uc002vuq.3_Intron|UGT1A1_uc002vur.3_Intron|UGT1A1_uc010zmw.1_Intron|UGT1A1_uc002vus.3_Intron|UGT1A1_uc010zmx.1_Frame_Shift_Del_p.L119fs	NM_019077	NP_061950	P22309	UD11_HUMAN	Homo sapiens UDP glucuronosyltransferase 1 family, polypeptide A7 (UGT1A7), mRNA.	122					bilirubin conjugation|digestion|estrogen metabolic process|flavone metabolic process|heme catabolic process	endoplasmic reticulum membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding|steroid binding			breast(1)|central_nervous_system(2)|endometrium(7)|large_intestine(5)|lung(9)|skin(4)|urinary_tract(2)	30		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;4.1e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000435)|Lung(119;0.00211)|LUSC - Lung squamous cell carcinoma(224;0.0054)	Abacavir(DB01048)|Adenine(DB00173)|Diclofenac(DB00586)|Estradiol(DB00783)|Ezetimibe(DB00973)|Irinotecan(DB00762)|Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|Propofol(DB00818)|Rifampin(DB01045)|Troglitazone(DB00197)	TTTTTGACTTATTTTTTTCAA	0.388												
HDLBP	3069	broad.mit.edu	37	2	242187454	242187454	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr2:242187453_242187453AT>A	uc002waz.3	-	13	1869	c.1696_1696AT>T	c.(1696-1698)tgcfs	p.C566fs	HDLBP_uc002wba.3_Frame_Shift_Del_p.C566fs|HDLBP_uc021vzg.1_Frame_Shift_Del_p.C533fs	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	Homo sapiens high density lipoprotein binding protein (HDLBP), transcript variant 2, mRNA.	566	KH 6.				cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	RNA binding|lipid binding|protein binding			breast(7)|cervix(1)|endometrium(8)|kidney(1)|large_intestine(11)|lung(8)|ovary(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	44		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		TATTTTGTGCATTTTTCCACC	0.478												
PDCD6IP	10015	broad.mit.edu	37	3	33866811	33866812	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:33866810_33866811A>AT	uc003cfx.3	+	4	749_750	c.594_595A>AT	c.(592-597)gtatttfs	p.V198fs	PDCD6IP_uc011axv.2_Frame_Shift_Ins_p.V198fs|PDCD6IP_uc003cfy.3_Frame_Shift_Ins_p.V198fs	NM_013374	NP_037506	Q8WUM4	PDC6I_HUMAN	Homo sapiens programmed cell death 6 interacting protein (PDCD6IP), transcript variant 1, mRNA.	198	BRO1.|Interaction with CHMP4A, CHMP4B and CHMP4C.|Interaction with EIAV p9.				apoptosis|cell cycle|cell division|interspecies interaction between organisms|protein transport	cytosol|melanosome|microtubule organizing center	calcium-dependent protein binding			central_nervous_system(3)|endometrium(1)|kidney(2)|large_intestine(7)|lung(6)|ovary(2)|skin(1)|stomach(1)	23						CTCAAGAAGTATTTTTTTTAAA	0.366												
EPM2AIP1	9852	broad.mit.edu	37	3	37033280	37033280	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:37033279_37033279AT>A	uc003cgk.3	-	0	1517	c.1290_1290AT>T	c.(1288-1290)aatfs	p.N430fs	MLH1_uc011aye.2_5'Flank|MLH1_uc003cgl.3_5'Flank|MLH1_uc011ayb.2_5'Flank|MLH1_uc010hge.3_5'Flank|MLH1_uc011ayc.2_5'Flank|MLH1_uc011ayd.2_5'Flank|MLH1_uc003cgo.3_5'Flank|MLH1_uc003cgn.4_5'Flank	NM_014805	NP_055620	Q7L775	EPMIP_HUMAN	Homo sapiens EPM2A (laforin) interacting protein 1 (EPM2AIP1), mRNA.	430				N -> I (in Ref. 2; AAG43120).		endoplasmic reticulum				breast(1)|endometrium(3)|kidney(1)|large_intestine(7)|liver(1)|lung(12)|ovary(2)	27						AGTCTGTTAGATTTTTTTCCT	0.338												
DLEC1	9940	broad.mit.edu	37	3	38104179	38104179	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:38104178_38104178TA>T	uc003chp.1	+	4	1001	c.980_980TA>T	c.(979-981)ctafs	p.L327fs	DLEC1_uc003cho.1_Frame_Shift_Del_p.L327fs|DLEC1_uc010hgv.1_Frame_Shift_Del_p.L327fs|DLEC1_uc010hgw.1_Frame_Shift_Del_p.L26fs|DLEC1_uc003chq.1_Non-coding_Transcript	NM_007337	NP_031363	Q9Y238	DLEC1_HUMAN	Homo sapiens deleted in lung and esophageal cancer 1 (DLEC1), transcript variant DLEC1-S3, mRNA.	327					negative regulation of cell proliferation	cytoplasm				NS(1)|breast(3)|central_nervous_system(3)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(9)|lung(14)|ovary(3)|pancreas(3)|prostate(1)|skin(5)|upper_aerodigestive_tract(2)	51				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		AACCACTTCCTAAAAAATCCC	0.453												
CSRNP1	64651	broad.mit.edu	37	3	39185302	39185303	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:39185301_39185302T>TG	uc003cjg.3	-	4	1228_1229	c.1014_1015A>CA	c.(1012-1017)cccatgfs	p.P338fs	CSRNP1_uc003cjh.3_Frame_Shift_Ins_p.P338fs	NM_033027	NP_149016	Q96S65	CSRN1_HUMAN	Homo sapiens cysteine-serine-rich nuclear protein 1 (CSRNP1), mRNA.	338					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(3)|endometrium(4)|kidney(1)|large_intestine(5)|lung(3)|ovary(5)|skin(3)	24						TCATTGTTCATGGGGGGCTTGG	0.609												
ZNF35	7584	broad.mit.edu	37	3	44700847	44700847	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:44700846_44700846GA>G	uc003cnq.3	+	3	1212	c.991_991GA>G	c.(991-993)gaafs	p.E331fs	ZNF35_uc003cnr.3_Frame_Shift_Del_p.E171fs	NM_003420	NP_003411	P13682	ZNF35_HUMAN	Homo sapiens zinc finger protein 35 (ZNF35), mRNA.	331					cellular response to retinoic acid|spermatogenesis	nucleus|perinuclear region of cytoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|liver(2)|lung(4)|ovary(1)|prostate(1)|skin(1)	12		Ovarian(412;0.0228)		OV - Ovarian serous cystadenocarcinoma(275;2.49e-27)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)		CCACATTACGGAAAAATGCTA	0.418												
SETD2	29072	broad.mit.edu	37	3	47161907	47161907	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:47161906_47161906CT>C	uc003cqv.3	-	2	4273	c.4187_4187AG>G	c.(4186-4188)aggfs	p.R1396fs	SETD2_uc003cqs.3_Frame_Shift_Del_p.R1407fs	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	Homo sapiens SET domain containing 2 (SETD2), mRNA.	1407					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			breast(6)|central_nervous_system(5)|endometrium(4)|kidney(63)|large_intestine(18)|lung(26)|ovary(6)|prostate(2)|skin(3)|soft_tissue(1)|stomach(2)|urinary_tract(5)	141		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		TTCCTGCCTCCTTTTTTTAAG	0.388			"""N, F, S, Mis"""		clear cell renal carcinoma							
CELSR3	1951	broad.mit.edu	37	3	48699915	48699915	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:48699914_48699914GC>G	uc003cuf.1	-	2	364	c.364_364GC>C	c.(364-366)ccafs	p.P122fs	CELSR3_uc003cul.3_Frame_Shift_Del_p.P52fs	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	Homo sapiens cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila) (CELSR3), mRNA.	52					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|calcium ion binding|protein binding			NS(1)|biliary_tract(1)|breast(2)|central_nervous_system(3)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(7)|lung(23)|ovary(9)|prostate(6)|skin(7)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(5)	83				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TGCGCCCTTGGCCCCGTAGTG	0.667												
IP6K2	51447	broad.mit.edu	37	3	48730461	48730461	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:48730460_48730460GT>G	uc003cuq.3	-	2	816	c.355_355AC>C	c.(355-357)catfs	p.H119fs	IP6K2_uc003cup.3_Frame_Shift_Del_p.H119fs	NM_016291	NP_057375	Q9UHH9	IP6K2_HUMAN	Homo sapiens inositol hexakisphosphate kinase 2 (IP6K2), transcript variant 1, mRNA.	119					negative regulation of cell growth|phosphatidylinositol phosphorylation|positive regulation of apoptosis|type I interferon-mediated signaling pathway	intermediate filament cytoskeleton|nucleus	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol trisphosphate 3-kinase activity	p.H119H(1)		biliary_tract(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(2)|lung(7)|ovary(1)	15						AAGACATGATGTTTTTTGTTT	0.433												
GMPPB	29925	broad.mit.edu	37	3	49760738	49760741	+	Splice_Site	DEL	GGAA	GGAA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:49760737_49760740TGGAA>T	uc003cxl.1	-	3	436	c.211_splice	c.e3-1	p.L71_splice	GMPPB_uc003cxk.1_Splice_Site_p.L71_splice	NM_013334	NP_037466	Q9Y5P6	GMPPB_HUMAN	Homo sapiens GDP-mannose pyrophosphorylase B (GMPPB), transcript variant 1, mRNA.	71					GDP-mannose biosynthetic process|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine		GTP binding|mannose-1-phosphate guanylyltransferase activity			endometrium(1)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.53e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GATTCCCAGCTGGAAGGAAGAGGC	0.583												
MST1R	4486	broad.mit.edu	37	3	49940944	49940944	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:49940943_49940943AG>A	uc003cxy.4	-	0	364	c.100_100CT>T	c.(100-102)tacfs	p.Y34fs	MST1R_uc011bdc.2_Frame_Shift_Del_p.Y34fs|MST1R_uc011bdd.2_Frame_Shift_Del_p.Y34fs|MST1R_uc011bde.1_Frame_Shift_Del_p.Y34fs|MST1R_uc011bdf.1_Frame_Shift_Del_p.Y34fs|MST1R_uc011bdg.2_Frame_Shift_Del_p.Y34fs	NM_002447	NP_002438	Q04912	RON_HUMAN	Homo sapiens macrophage stimulating 1 receptor (c-met-related tyrosine kinase) (MST1R), transcript variant 1, mRNA.	34	Sema.				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			cervix(1)|endometrium(5)|large_intestine(3)|lung(17)|ovary(5)|prostate(2)|skin(1)|urinary_tract(3)	37				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		GAGGCCGCGTAGGGGGTGCGC	0.667												
VPRBP	9730	broad.mit.edu	37	3	51457448	51457448	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:51457447_51457447GT>G	uc003dbe.2	-	13	3003	c.2818_2818AC>C	c.(2818-2820)cagfs	p.Q940fs	VPRBP_uc021wys.1_Frame_Shift_Del_p.Q939fs|VPRBP_uc003dbf.1_Frame_Shift_Del_p.Q269fs	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	Homo sapiens Vpr (HIV-1) binding protein (VPRBP), transcript variant 1, mRNA.	993					interspecies interaction between organisms	cytoplasm|nucleus	protein binding			breast(1)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(6)|lung(12)|ovary(1)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)	41				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		CTGTCCAGCTGTTTTTTTATG	0.502												
DNAH1	25981	broad.mit.edu	37	3	52402790	52402790	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52402789_52402789CG>C	uc011bef.2	+	36	6059	c.5798_5798CG>C	c.(5797-5799)gcgfs	p.A1933fs		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	Homo sapiens dynein, axonemal, heavy chain 1 (DNAH1), mRNA.	1933	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			cervix(2)|endometrium(18)|kidney(6)|large_intestine(3)|lung(31)|prostate(1)|urinary_tract(1)	62				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TTCATCCGGGCGGGGGCCATC	0.592												
STAB1	23166	broad.mit.edu	37	3	52551026	52551026	+	Frame_Shift_Del	DEL	G	G	-	rs72947529	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52551025_52551025TG>T	uc003dej.3	+	41	4463	c.4389_4389TG>T	c.(4387-4389)catfs	p.H1463fs	STAB1_uc003dek.1_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	Homo sapiens stabilin 1 (STAB1), mRNA.	1463	EGF-like 11.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			breast(4)|central_nervous_system(3)|endometrium(7)|kidney(2)|large_intestine(13)|liver(1)|lung(27)|ovary(1)|pancreas(1)|prostate(4)|skin(6)|upper_aerodigestive_tract(4)|urinary_tract(3)	76				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CCCACGGCCATGGGGGCTGCT	0.677												
PBRM1	55193	broad.mit.edu	37	3	52643791	52643792	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52643790_52643791C>CT	uc003des.2	-	15	2117_2118	c.2105_2106G>AG	c.(2104-2106)aagfs	p.K702fs	PBRM1_uc003dex.2_Non-coding_Transcript|PBRM1_uc003deq.2_Frame_Shift_Ins_p.K702fs|PBRM1_uc003der.2_Frame_Shift_Ins_p.K670fs|PBRM1_uc003det.2_Frame_Shift_Ins_p.K717fs|PBRM1_uc003deu.2_Frame_Shift_Ins_p.K717fs|PBRM1_uc003dev.2_Non-coding_Transcript|PBRM1_uc003dew.2_Frame_Shift_Ins_p.K702fs|PBRM1_uc010hmk.1_Frame_Shift_Ins_p.K702fs|PBRM1_uc003dey.2_Frame_Shift_Ins_p.K702fs|PBRM1_uc003dez.1_Frame_Shift_Ins_p.K702fs|PBRM1_uc003dfb.1_Frame_Shift_Ins_p.K615fs|PBRM1_uc003dfa.1_Frame_Shift_Ins_p.K48fs|PBRM1_uc003dfc.3_Frame_Shift_Ins_p.K69fs	NM_181042	NP_060635	Q86U86	PB1_HUMAN	Homo sapiens polybromo 1 (PBRM1), transcript variant 4, mRNA.	702	Bromo 5.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	DNA binding|chromatin binding|protein binding			breast(5)|endometrium(5)|kidney(301)|liver(1)|lung(22)|pancreas(1)	335				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		TGTCCATGGGCTTTTTAATAGT	0.416			"""Mis, N, F, S, D, O"""		"""clear cell renal carcinoma, breast"""							
PBRM1	55193	broad.mit.edu	37	3	52643943	52643944	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:52643942_52643943A>AT	uc003des.2	-	15	1965_1966	c.1953_1954T>AT	c.(1951-1956)aaatcafs	p.K651fs	PBRM1_uc003dex.2_Non-coding_Transcript|PBRM1_uc003deq.2_Frame_Shift_Ins_p.K651fs|PBRM1_uc003der.2_Frame_Shift_Ins_p.K619fs|PBRM1_uc003det.2_Frame_Shift_Ins_p.K666fs|PBRM1_uc003deu.2_Frame_Shift_Ins_p.K666fs|PBRM1_uc003dev.2_Non-coding_Transcript|PBRM1_uc003dew.2_Frame_Shift_Ins_p.K651fs|PBRM1_uc010hmk.1_Frame_Shift_Ins_p.K651fs|PBRM1_uc003dey.2_Frame_Shift_Ins_p.K651fs|PBRM1_uc003dez.1_Frame_Shift_Ins_p.K651fs|PBRM1_uc003dfb.1_Frame_Shift_Ins_p.K564fs|PBRM1_uc003dfa.1_5'UTR|PBRM1_uc003dfc.3_Frame_Shift_Ins_p.K18fs	NM_181042	NP_060635	Q86U86	PB1_HUMAN	Homo sapiens polybromo 1 (PBRM1), transcript variant 4, mRNA.	651					chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	DNA binding|chromatin binding|protein binding	p.S652fs*13(3)|p.S652*(1)|p.S620fs*13(1)		breast(5)|endometrium(5)|kidney(301)|liver(1)|lung(22)|pancreas(1)	335				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		ATGTATTTTGATTTTTTAGGAG	0.347			"""Mis, N, F, S, D, O"""		"""clear cell renal carcinoma, breast"""							
ACTR8	93973	broad.mit.edu	37	3	53910110	53910111	+	Splice_Site	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:53910109_53910110T>TG	uc003dhd.3	-	7	880	c.779_splice	c.e7-1	p.G260_splice	ACTR8_uc003dhb.3_Splice_Site_p.G10_splice|ACTR8_uc003dhc.3_Splice_Site_p.G149_splice	NM_022899	NP_075050	Q9H981	ARP8_HUMAN	Homo sapiens ARP8 actin-related protein 8 homolog (yeast) (ACTR8), mRNA.	260					DNA recombination|DNA repair|cell division|mitosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex	protein binding			autonomic_ganglia(1)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(3)|lung(6)|ovary(2)|prostate(1)	19				BRCA - Breast invasive adenocarcinoma(193;0.000143)|KIRC - Kidney renal clear cell carcinoma(284;0.00544)|Kidney(284;0.00607)|OV - Ovarian serous cystadenocarcinoma(275;0.111)		CCACAATCCCTGGGGGGGGAAA	0.515												
FLNB	2317	broad.mit.edu	37	3	58089788	58089788	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:58089787_58089787TG>T	uc003djj.2	+	9	1750	c.1585_1585TG>T	c.(1585-1587)tggfs	p.W529fs	FLNB_uc010hne.2_Frame_Shift_Del_p.W529fs|FLNB_uc003djk.2_Frame_Shift_Del_p.W529fs|FLNB_uc010hnf.2_Frame_Shift_Del_p.W529fs|FLNB_uc003djl.2_Frame_Shift_Del_p.W360fs|FLNB_uc003djm.2_Frame_Shift_Del_p.W360fs	NM_001457	NP_001448	O75369	FLNB_HUMAN	Homo sapiens filamin B, beta (FLNB), transcript variant 2, mRNA.	529					actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			NS(1)|breast(13)|central_nervous_system(2)|endometrium(10)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(23)|liver(2)|lung(38)|ovary(6)|prostate(3)|skin(8)|upper_aerodigestive_tract(3)|urinary_tract(5)	120				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		TGCCATCACATGGGGGGGACA	0.592												
PROK2	60675	broad.mit.edu	37	3	71821968	71821968	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:71821967_71821967CA>C	uc003dpa.4	-	3	452	c.298_298TG>G	c.(298-300)gggfs	p.G100fs	PROK2_uc003doz.4_Frame_Shift_Del_p.G79fs	NM_001126128	NP_001119600	Q9HC23	PROK2_HUMAN	Homo sapiens prokineticin 2 (PROK2), transcript variant 1, mRNA.	100					activation of MAPK activity|angiogenesis|anti-apoptosis|cell proliferation|chemotaxis|elevation of cytosolic calcium ion concentration|inflammatory response|neuropeptide signaling pathway|positive regulation of smooth muscle contraction|sensory perception of pain|spermatogenesis	extracellular region	G-protein-coupled receptor binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(2)|upper_aerodigestive_tract(1)	6		Prostate(10;0.00899)		BRCA - Breast invasive adenocarcinoma(55;1.89e-05)|Epithelial(33;0.000173)|LUSC - Lung squamous cell carcinoma(21;0.00168)|Lung(16;0.00306)		ATCCTCCGCCCAAAAAATGGA	0.393												
FAM55C	91775	broad.mit.edu	37	3	101525973	101525973	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:101525972_101525972TA>T	uc003dvn.3	+	6	1559	c.922_splice	c.e6+2	p.E308_splice	FAM55C_uc010hpn.3_Splice_Site_p.E308_splice	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	Homo sapiens family with sequence similarity 55, member C (FAM55C), transcript variant 2, mRNA.	308						extracellular region				breast(2)|endometrium(6)|kidney(1)|large_intestine(4)|lung(14)|ovary(1)|pancreas(1)|prostate(1)|skin(2)	32						GAATAAAAGGTAAAAAAAAGA	0.353												
NFKBIZ	64332	broad.mit.edu	37	3	101571028	101571029	+	Frame_Shift_Del	DEL	AT	AT	-	rs145163386		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:101571027_101571028CAT>C	uc003dvp.3	+	1	503_504	c.388_389CAT>C	c.(388-390)catfs	p.H130fs	NFKBIZ_uc003dvo.3_Frame_Shift_Del_p.H30fs|NFKBIZ_uc010hpo.3_Frame_Shift_Del_p.H30fs|NFKBIZ_uc003dvq.3_Frame_Shift_Del_p.H130fs	NM_031419	NP_001005474	Q9BYH8	IKBZ_HUMAN	Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta (NFKBIZ), transcript variant 1, mRNA.	130					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				breast(1)|endometrium(3)|kidney(2)|large_intestine(4)|lung(8)|ovary(2)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	24						CATCCGAAGTCATAAACAGAAG	0.485												
KIAA1524	57650	broad.mit.edu	37	3	108276263	108276263	+	Splice_Site	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:108276262_108276262CT>C	uc003dxb.4	-	17	2283	c.2014_splice	c.e17-1	p.A672_splice		NM_020890	NP_065941	Q8TCG1	CIP2A_HUMAN	Homo sapiens KIAA1524 (KIAA1524), mRNA.	672						cytoplasm|integral to membrane	protein binding			NS(1)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(5)|lung(21)|ovary(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	38						GTGTCCGTGCCTCAAAAAAAA	0.363												
CCDC80	151887	broad.mit.edu	37	3	112356992	112356992	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:112356991_112356991CT>C	uc003dzf.3	-	1	1980	c.1762_1762AG>G	c.(1762-1764)ggafs	p.G588fs	CCDC80_uc011bhv.2_Frame_Shift_Del_p.G588fs|CCDC80_uc003dzg.3_Frame_Shift_Del_p.G588fs|CCDC80_uc003dzh.1_Frame_Shift_Del_p.G588fs	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	Homo sapiens coiled-coil domain containing 80 (CCDC80), transcript variant 2, mRNA.	588	Lys-rich.									breast(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(13)|liver(1)|lung(21)|ovary(3)|pancreas(2)|prostate(4)	51						GTTTTACCTCCTtttttcttc	0.443												
ZBTB20	26137	broad.mit.edu	37	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:114058002_114058002AG>A	uc003ebi.3	-	4	2256	c.2076_2076CT>T	c.(2074-2076)cctfs	p.P692fs	ZBTB20_uc003ebj.3_Frame_Shift_Del_p.P619fs|ZBTB20_uc010hqp.3_Frame_Shift_Del_p.P619fs|ZBTB20_uc003ebk.3_Frame_Shift_Del_p.P619fs|ZBTB20_uc003ebl.3_Frame_Shift_Del_p.P619fs|ZBTB20_uc003ebm.3_Frame_Shift_Del_p.P619fs|ZBTB20_uc003ebn.3_Frame_Shift_Del_p.P619fs	NM_001164342	NP_056457	Q9HC78	ZBT20_HUMAN	Homo sapiens zinc finger and BTB domain containing 20 (ZBTB20), transcript variant 1, mRNA.	692					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(10)|kidney(2)|large_intestine(8)|lung(15)|ovary(4)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)	48				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		GTGTGCCTGCAGGGGGGGTCC	0.632												
HGD	3081	broad.mit.edu	37	3	120352071	120352072	+	Frame_Shift_Ins	INS	-	-	G	rs120074172		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:120352070_120352071T>TG	uc003edw.3	-	12	1571_1572	c.1111_1112A>CA	c.(1111-1113)catfs	p.H371fs	HGD_uc003edv.3_Frame_Shift_Ins_p.H230fs	NM_000187	NP_000178	Q93099	HGD_HUMAN	Homo sapiens homogentisate 1,2-dioxygenase (HGD), mRNA.	371			H -> R (in AKU).		L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding			cervix(1)|endometrium(4)|kidney(2)|large_intestine(3)|lung(11)|ovary(1)|prostate(1)|skin(2)	25				GBM - Glioblastoma multiforme(114;0.158)		ATCAGGTCCATGGGGGGTCATT	0.545												
PARP15	165631	broad.mit.edu	37	3	122345823	122345823	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:122345822_122345822GA>G	uc003efm.2	+	8	1446	c.1380_1380GA>G	c.(1378-1380)atgfs	p.M460fs	PARP15_uc003efn.2_Intron|PARP15_uc003efo.1_Frame_Shift_Del_p.M207fs|PARP15_uc003efp.1_Frame_Shift_Del_p.M226fs|PARP15_uc011bjt.1_Intron	NM_001113523	NP_001106995	Q460N3	PAR15_HUMAN	Homo sapiens poly (ADP-ribose) polymerase family, member 15 (PARP15), transcript variant 1, mRNA.	438	PARP catalytic.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	NAD+ ADP-ribosyltransferase activity			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(5)|lung(11)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	24				GBM - Glioblastoma multiforme(114;0.0531)		ACGACAGCATGAAAAAAAGAG	0.373												
UMPS	7372	broad.mit.edu	37	3	124458976	124458976	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:124458975_124458975CG>C	uc003ehl.4	+	3	1193	c.1087_1087CG>C	c.(1087-1089)cggfs	p.R363fs	UMPS_uc011bkb.2_Frame_Shift_Del_p.R271fs|UMPS_uc003ehn.4_Frame_Shift_Del_p.R185fs|UMPS_uc003ehm.4_Non-coding_Transcript|UMPS_uc011bka.2_Frame_Shift_Del_p.R185fs|UMPS_uc011bkc.2_Frame_Shift_Del_p.R185fs|UMPS_uc011bkd.2_Intron	NM_000373	NP_000364	P11172	UMPS_HUMAN	Homo sapiens uridine monophosphate synthetase (UMPS), transcript variant 1, mRNA.	363	OMPdecase.				'de novo' UMP biosynthetic process|'de novo' pyrimidine base biosynthetic process|pyrimidine nucleoside biosynthetic process	cytosol|nucleus	orotate phosphoribosyltransferase activity|orotidine-5'-phosphate decarboxylase activity			cervix(1)|endometrium(2)|kidney(2)|large_intestine(2)|lung(6)|ovary(1)|skin(2)	16				GBM - Glioblastoma multiforme(114;0.146)		GCCTTTGCATCGGGGGTGCCT	0.567												
TMEM108	66000	broad.mit.edu	37	3	133098772	133098772	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:133098771_133098771AC>A	uc003epi.3	+	3	486	c.216_216AC>A	c.(214-216)ggafs	p.G72fs	TMEM108_uc003eph.3_Frame_Shift_Del_p.G72fs|TMEM108_uc003epj.1_Frame_Shift_Del_p.G72fs|TMEM108_uc003epk.3_Intron	NM_001136469	NP_076432	Q6UXF1	TM108_HUMAN	Homo sapiens transmembrane protein 108 (TMEM108), transcript variant 2, mRNA.	72	Pro-rich.					integral to membrane		p.D71Y(1)		endometrium(3)|kidney(1)|large_intestine(5)|lung(22)|ovary(2)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	38						ATCCCGATGGACCCCCCTCAC	0.627												
STAG1	10274	broad.mit.edu	37	3	136240262	136240262	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:136240261_136240261TA>T	uc003era.1	-	7	764	c.472_splice	c.e7-1	p.D158_splice	STAG1_uc003erb.1_Splice_Site_p.D158_splice|STAG1_uc003erc.1_Splice_Site|STAG1_uc010hua.1_Splice_Site_p.D21_splice|STAG1_uc003ere.3_Splice_Site_p.D158_splice	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	Homo sapiens stromal antigen 1 (STAG1), mRNA.	158					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			NS(2)|breast(4)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(16)|lung(16)|ovary(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	58						ACCACTGTCCTAAAAAACAGA	0.358												
RBP2	5948	broad.mit.edu	37	3	139173585	139173585	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:139173584_139173584TC>T	uc003eth.3	-	2	392	c.341_341GA>A	c.(340-342)gacfs	p.D114fs		NM_004164	NP_004155	P50120	RET2_HUMAN	Homo sapiens retinol binding protein 2, cellular (RBP2), mRNA.	114				D -> G (in Ref. 4; AAH69396).	epidermis development|retinoid metabolic process|steroid metabolic process|vitamin A metabolic process	cytosol	retinal binding|retinol binding|transporter activity			breast(1)|large_intestine(1)|lung(7)|prostate(1)|skin(1)|urinary_tract(1)	12					Vitamin A(DB00162)	GTACAGCTTGTCCCCCTCAAT	0.517												
ZBTB38	253461	broad.mit.edu	37	3	141162875	141162876	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:141162874_141162875T>TA	uc010hup.3	+	1	1694_1695	c.1647_1648T>TA	c.(1645-1650)agtaaafs	p.S549fs	ZBTB38_uc003etw.3_Frame_Shift_Ins_p.S548fs|ZBTB38_uc010hun.3_Frame_Shift_Ins_p.S545fs|ZBTB38_uc010huo.3_Frame_Shift_Ins_p.S548fs|ZBTB38_uc003ety.3_Frame_Shift_Ins_p.S548fs|ZBTB38_uc021xes.1_Frame_Shift_Ins_p.S548fs	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	Homo sapiens zinc finger and BTB domain containing 38 (ZBTB38), mRNA.	548					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(3)|cervix(4)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(3)|lung(14)|ovary(3)|prostate(2)|skin(3)|urinary_tract(1)	41						TTTCCATCAGTAAAAAAACAGC	0.386												
GRK7	131890	broad.mit.edu	37	3	141535708	141535708	+	Frame_Shift_Del	DEL	G	G	-	rs149574289		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:141535707_141535707CG>C	uc011bnd.2	+	3	1561	c.1477_1477CG>C	c.(1477-1479)cggfs	p.R493fs		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	Homo sapiens G protein-coupled receptor kinase 7 (GRK7), mRNA.	493	AGC-kinase C-terminal.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity	p.R493L(1)		endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(3)|lung(14)|ovary(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	26						CTCTGAGGTTCGGGGGGTGGA	0.458												
ATR	545	broad.mit.edu	37	3	142188315	142188315	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:142188314_142188314CA>C	uc003eux.4	-	37	6539	c.6417_6417TG>G	c.(6415-6417)ttgfs	p.L2139fs	ATR_uc003euy.1_Frame_Shift_Del_p.L25fs	NM_001184	NP_001175	Q13535	ATR_HUMAN	Homo sapiens ataxia telangiectasia and Rad3 related (ATR), mRNA.	2139	FAT.				DNA damage checkpoint|DNA repair|DNA replication|cell cycle|cellular response to UV|cellular response to gamma radiation|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			NS(1)|breast(10)|central_nervous_system(1)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(20)|liver(2)|lung(45)|ovary(3)|skin(10)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(4)	122						AAAAAGCAGTCAAAAATTGAT	0.368								Other conserved DNA damage response genes				
ATP11B	23200	broad.mit.edu	37	3	182587085	182587086	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:182587084_182587085G>GA	uc003flb.3	+	16	2088_2089	c.1831_1832G>GA	c.(1831-1833)gaafs	p.E611fs	ATP11B_uc003flc.3_Frame_Shift_Ins_p.E195fs	NM_014616	NP_055431	Q9Y2G3	AT11B_HUMAN	Homo sapiens ATPase, class VI, type 11B (ATP11B), mRNA.	611					ATP biosynthetic process|aminophospholipid transport	integral to membrane|nuclear inner membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(3)|cervix(2)|endometrium(2)|kidney(4)|large_intestine(6)|liver(2)|lung(14)|ovary(2)|pancreas(2)|prostate(1)|skin(2)|urinary_tract(1)	41	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;1.2e-42)|Epithelial(37;2.77e-36)|LUSC - Lung squamous cell carcinoma(7;7.58e-24)|Lung(8;4.66e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.35e-20)			TGGAGAAATAGAAAAAACCAGA	0.292												
B3GNT5	84002	broad.mit.edu	37	3	182987918	182987919	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:182987917_182987918T>TG	uc003flm.3	+	1	854_855	c.331_332T>TG	c.(331-333)tggfs	p.W111fs	MCF2L2_uc003fli.1_Intron|MCF2L2_uc003flj.1_Intron|MCF2L2_uc011bqr.1_Intron|B3GNT5_uc003flk.3_Frame_Shift_Ins_p.W111fs|B3GNT5_uc003fll.3_Frame_Shift_Ins_p.W111fs|B3GNT5_uc021xic.1_Frame_Shift_Ins_p.W111fs	NM_032047	NP_114436	Q9BYG0	B3GN5_HUMAN	Homo sapiens UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 (B3GNT5), mRNA.	111					central nervous system development|glycolipid biosynthetic process|protein glycosylation	Golgi membrane|integral to membrane	beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity|galactosyltransferase activity	p.T110T(1)		endometrium(2)|large_intestine(1)|lung(3)|ovary(1)|skin(1)	8	all_cancers(143;8.52e-13)|Ovarian(172;0.0355)		all cancers(12;4.52e-44)|Epithelial(37;8.82e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			TAGAAGGACGTGGGGCAATGAA	0.426												
CLCN2	1181	broad.mit.edu	37	3	184070896	184070896	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:184070895_184070895TC>T	uc003foi.3	-	17	2193	c.2069_2069GA>A	c.(2068-2070)gagfs	p.E690fs	CLCN2_uc003foh.3_Frame_Shift_Del_p.E214fs|CLCN2_uc010hya.2_Frame_Shift_Del_p.E673fs|CLCN2_uc011brl.2_Frame_Shift_Del_p.E690fs|CLCN2_uc011brm.2_Frame_Shift_Del_p.E646fs	NM_004366	NP_004357	P51788	CLCN2_HUMAN	Homo sapiens chloride channel 2 (CLCN2), transcript variant 1, mRNA.	690						chloride channel complex	voltage-gated chloride channel activity			breast(2)|central_nervous_system(4)|endometrium(1)|kidney(3)|large_intestine(4)|lung(9)|ovary(1)|prostate(1)|stomach(1)|upper_aerodigestive_tract(1)	27	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	CTTGTGGGTCTCCCCCCGGGC	0.622												
UBXN7	26043	broad.mit.edu	37	3	196089374	196089376	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr3:196089373_196089375CTCT>C	uc003fwm.4	-	8	1093_1095	c.1018_1020AGAG>G	c.(1018-1020)gag>G	p.E340del	UBXN7_uc003fwn.4_In_Frame_Del_p.E192del|UBXN7_uc010iae.3_In_Frame_Del_p.E178del	NM_015562	NP_056377	O94888	UBXN7_HUMAN	Homo sapiens UBX domain protein 7 (UBXN7), mRNA.	340	Poly-Glu.						protein binding			NS(1)|endometrium(2)|large_intestine(4)|lung(6)|ovary(2)|pancreas(1)|prostate(1)|skin(1)	18						GATTCTCTACCTCTTCTTCTTCA	0.458												
HTT	3064	broad.mit.edu	37	4	3133117	3133117	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:3133116_3133116GA>G	uc021xkv.1	+	14	2235	c.2090_2090GA>G	c.(2089-2091)ggafs	p.G697fs		NM_002111	NP_002102	P42858	HD_HUMAN	Homo sapiens huntingtin (HTT), mRNA.	697					Golgi organization|establishment of mitotic spindle orientation|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	Golgi apparatus|autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			breast(1)|cervix(2)|endometrium(14)|kidney(5)|large_intestine(23)|lung(28)|ovary(4)|prostate(2)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(1)	87		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CTAACAGGGGGAAAAAATGGT	0.478												
EVC	2121	broad.mit.edu	37	4	5806486	5806486	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:5806485_5806485GA>G	uc003gil.1	+	16	2662	c.2478_2478GA>G	c.(2476-2478)cggfs	p.R826fs	EVC_uc003gim.1_Non-coding_Transcript	NM_153717	NP_714928	P57679	EVC_HUMAN	Homo sapiens Ellis van Creveld syndrome (EVC), mRNA.	826					muscle organ development	integral to membrane				NS(1)|breast(1)|endometrium(2)|large_intestine(10)|lung(11)|ovary(1)|skin(1)|stomach(1)	28		Myeloproliferative disorder(84;0.117)				ACAAACTGCGGAAAAAGCAAG	0.562												
MRPL1	65008	broad.mit.edu	37	4	78804445	78804445	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:78804444_78804444GA>G	uc003hku.2	+	2	390	c.192_192GA>G	c.(190-192)gagfs	p.E64fs		NM_020236	NP_064621	Q9BYD6	RM01_HUMAN	Homo sapiens mitochondrial ribosomal protein L1 (MRPL1), nuclear gene encoding mitochondrial protein, mRNA.	64							RNA binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(9)|prostate(1)	17						CACCAGATGAGAAAAAAGATG	0.299												
HELQ	113510	broad.mit.edu	37	4	84350768	84350768	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:84350767_84350767CT>C	uc003hom.3	-	11	2607	c.2428_2428AG>G	c.(2428-2430)ggafs	p.G810fs	HELQ_uc010ikb.3_Frame_Shift_Del_p.G743fs|HELQ_uc003hol.4_Non-coding_Transcript|HELQ_uc010ikc.3_Non-coding_Transcript	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	Homo sapiens helicase, POLQ-like (HELQ), mRNA.	810							ATP binding|ATP-dependent helicase activity|nucleic acid binding			breast(1)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(10)|lung(17)|ovary(2)|skin(2)	38						TGTAGGAGTCCTTTTTCTGTC	0.328								Other identified genes with known or suspected DNA repair function				
SLC10A6	345274	broad.mit.edu	37	4	87769943	87769943	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:87769942_87769942GC>G	uc003hqd.2	-	0	475	c.327_327GC>C	c.(325-327)ggcfs	p.G109fs		NM_197965	NP_932069	Q3KNW5	SOAT_HUMAN	Homo sapiens solute carrier family 10 (sodium/bile acid cotransporter family), member 6 (SLC10A6), mRNA.	109						integral to membrane|plasma membrane	bile acid:sodium symporter activity			central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(2)|lung(3)	9		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.00099)		TAGAGATGGTGCCCCCCGGGC	0.507												
AFF1	4299	broad.mit.edu	37	4	88047293	88047293	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:88047292_88047292TC>T	uc011ccz.2	+	13	2890	c.2615_2615TC>T	c.(2614-2616)ctcfs	p.L872fs	AFF1_uc003hqj.4_Frame_Shift_Del_p.L865fs|AFF1_uc003hqk.4_Frame_Shift_Del_p.L865fs|AFF1_uc011cda.2_Frame_Shift_Del_p.L503fs	NM_001166693	NP_001160165	P51825	AFF1_HUMAN	Homo sapiens AF4/FMR2 family, member 1 (AFF1), transcript variant 1, mRNA.	865	Poly-Ser.					nucleus	sequence-specific DNA binding transcription factor activity			breast(1)|large_intestine(2)	3		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		AAGGAAATGCTCCCCCCGCCA	0.577												
MEPE	56955	broad.mit.edu	37	4	88766708	88766709	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:88766707_88766708C>CA	uc021xpx.1	+	3	792_793	c.780_781C>CA	c.(778-783)gtcaaafs	p.V260fs	MEPE_uc021xpu.1_Frame_Shift_Ins_p.V229fs|MEPE_uc021xpv.1_Frame_Shift_Ins_p.V116fs|MEPE_uc021xpw.1_Frame_Shift_Ins_p.V116fs|MEPE_uc010ikn.3_Frame_Shift_Ins_p.V116fs|MEPE_uc003hqy.3_Frame_Shift_Ins_p.V229fs|MEPE_uc021xpy.1_Frame_Shift_Ins_p.V116fs	NM_001184697	NP_001171626	Q9NQ76	MEPE_HUMAN	Homo sapiens matrix extracellular phosphoglycoprotein (MEPE), transcript variant 5, mRNA.	229					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			cervix(1)|endometrium(1)|kidney(3)|large_intestine(5)|lung(19)|ovary(1)|skin(5)|upper_aerodigestive_tract(1)	36		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		TCTCAAAAGTCAAAAAAATCCC	0.416												
HERC3	8916	broad.mit.edu	37	4	89585357	89585357	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:89585356_89585356GA>G	uc003hrw.1	+	11	1490	c.1324_1324GA>G	c.(1324-1326)gaafs	p.E442fs	HERC3_uc011cdn.1_Frame_Shift_Del_p.E324fs|HERC3_uc011cdo.1_Intron	NM_014606	NP_055421	Q15034	HERC3_HUMAN	Homo sapiens hect domain and RLD 3 (HERC3), mRNA.	442					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			NS(1)|breast(1)|central_nervous_system(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(10)|lung(14)|prostate(2)|skin(2)	45				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		AAGTTTTCTTGAAAAAAAGTA	0.398												
PPP3CA	5530	broad.mit.edu	37	4	102001725	102001725	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:102001724_102001724GA>G	uc011cen.1	-	7	1595	c.920_920TC>C	c.(919-921)tcafs	p.S307fs	PPP3CA_uc003hvu.2_Frame_Shift_Del_p.S307fs|PPP3CA_uc010ilj.2_Frame_Shift_Del_p.S307fs|PPP3CA_uc003hvt.2_Frame_Shift_Del_p.S294fs|PPP3CA_uc003hvs.2_Frame_Shift_Del_p.S240fs|PPP3CA_uc010ilk.2_Intron	NM_000944	NP_000935	Q08209	PP2BA_HUMAN	Homo sapiens protein phosphatase 3, catalytic subunit, alpha isozyme (PPP3CA), transcript variant 1, mRNA.	307					protein dephosphorylation	calcineurin complex|cytosol|nucleus	calcium ion binding|calmodulin binding			breast(1)|cervix(1)|endometrium(3)|large_intestine(4)|lung(8)|ovary(1)|skin(1)|urinary_tract(1)	20				OV - Ovarian serous cystadenocarcinoma(123;6.79e-08)		ATTTGGTGCTGAAAAAATTGT	0.318												
KIAA1109	84162	broad.mit.edu	37	4	123109176	123109176	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:123109175_123109175AG>A	uc003ieh.3	+	6	798	c.753_753AG>A	c.(751-753)aaafs	p.K251fs	KIAA1109_uc003iei.1_Frame_Shift_Del_p.K5fs	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	Homo sapiens KIAA1109 (KIAA1109), mRNA.	251					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				breast(7)|central_nervous_system(1)|cervix(1)|endometrium(16)|kidney(6)|large_intestine(33)|liver(4)|lung(74)|ovary(9)|pancreas(1)|prostate(5)|skin(6)|upper_aerodigestive_tract(6)|urinary_tract(3)	172						ATATTGTGAAAGGAAAGCTTG	0.338												
FAT4	79633	broad.mit.edu	37	4	126389840	126389840	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:126389839_126389839GT>G	uc003ifj.4	+	10	12072	c.12072_12072GT>G	c.(12070-12072)gagfs	p.E4024fs	FAT4_uc011cgp.2_Frame_Shift_Del_p.E2287fs|FAT4_uc003ifi.1_Frame_Shift_Del_p.E1502fs	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	Homo sapiens FAT tumor suppressor homolog 4 (Drosophila) (FAT4), mRNA.	4024	Laminin G-like 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(6)|autonomic_ganglia(1)|breast(4)|central_nervous_system(3)|cervix(3)|endometrium(27)|haematopoietic_and_lymphoid_tissue(3)|kidney(10)|large_intestine(93)|liver(3)|lung(120)|ovary(9)|pancreas(2)|prostate(21)|skin(31)|stomach(1)|upper_aerodigestive_tract(12)|urinary_tract(6)	355						ACCGGGCTGAGTTTTTGGCCC	0.408												
PCDH10	57575	broad.mit.edu	37	4	134071649	134071649	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:134071648_134071648AC>A	uc003iha.3	+	0	1179	c.353_353AC>A	c.(352-354)aacfs	p.N118fs	BC040219_uc003igy.3_5'Flank|PCDH10_uc003igz.3_Frame_Shift_Del_p.N118fs	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	Homo sapiens protocadherin 10 (PCDH10), transcript variant 1, mRNA.	118	Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.S121fs*13(1)		NS(2)|breast(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(30)|liver(1)|lung(72)|ovary(2)|prostate(2)|skin(2)|stomach(1)|upper_aerodigestive_tract(6)|urinary_tract(2)	136				LUSC - Lung squamous cell carcinoma(193;0.227)		ATTAATGACAACCCCCCCTCT	0.602												
LRBA	987	broad.mit.edu	37	4	151788975	151788975	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:151788974_151788974GA>G	uc010ipj.3	-	21	2859	c.2615_2615TC>C	c.(2614-2616)tctfs	p.S872fs	LRBA_uc003ilu.4_Frame_Shift_Del_p.S872fs	NM_006726	NP_006717	P50851	LRBA_HUMAN	Homo sapiens LPS-responsive vesicle trafficking, beach and anchor containing (LRBA), transcript variant 2, mRNA.	872						Golgi apparatus|endoplasmic reticulum|integral to membrane|lysosome|plasma membrane	protein binding			breast(6)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(20)|lung(32)|ovary(4)|prostate(6)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	91	all_hematologic(180;0.151)					ATAGCAGAGAGAAAGCATCCA	0.338												
GALNT7	51809	broad.mit.edu	37	4	174242834	174242835	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:174242833_174242834C>CA	uc003isz.4	+	11	2022_2023	c.1939_1940C>CA	c.(1939-1941)caafs	p.Q647fs	GALNT7_uc011ckb.2_Frame_Shift_Ins_p.Q424fs	NM_017423	NP_059119	Q86SF2	GALT7_HUMAN	Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) (GALNT7), mRNA.	647	Ricin B-type lectin.				protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(1)|kidney(3)|large_intestine(5)|liver(1)|lung(9)	19		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;1.87e-18)|Epithelial(43;3.44e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-09)|STAD - Stomach adenocarcinoma(60;0.0019)|GBM - Glioblastoma multiforme(59;0.0119)|LUSC - Lung squamous cell carcinoma(193;0.0199)		TAAAACGACTCAAAAATGGGAA	0.371												
FAT1	2195	broad.mit.edu	37	4	187630605	187630605	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr4:187630604_187630604AT>A	uc003izf.3	-	1	566	c.378_378AT>T	c.(376-378)aatfs	p.N126fs	FAT1_uc010iso.1_Frame_Shift_Del_p.N126fs	NM_005245	NP_005236	Q14517	FAT1_HUMAN	Homo sapiens FAT tumor suppressor homolog 1 (Drosophila) (FAT1), mRNA.	126	Cadherin 1.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			NS(1)|breast(3)|central_nervous_system(3)|endometrium(38)|haematopoietic_and_lymphoid_tissue(2)|kidney(12)|large_intestine(33)|lung(88)|ovary(13)|pancreas(2)|prostate(16)|skin(2)|upper_aerodigestive_tract(11)|urinary_tract(4)	228						CCACATTAGTATTTTTTTCAA	0.408										HNSCC(5;0.00058)		
SLC12A7	10723	broad.mit.edu	37	5	1074698	1074698	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:1074697_1074697TG>T	uc003jbu.3	-	15	2123	c.2057_2057CA>A	c.(2056-2058)cacfs	p.H686fs		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	Homo sapiens solute carrier family 12 (potassium/chloride transporters), member 7 (SLC12A7), mRNA.	686					potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			breast(1)|endometrium(3)|kidney(2)|large_intestine(3)|lung(14)|ovary(2)|prostate(1)|skin(4)|urinary_tract(2)	32	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	GTTCTTGGTGTGGGGGGGACC	0.647												
IRX4	50805	broad.mit.edu	37	5	1880905	1880905	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:1880904_1880904GC>G	uc003jcz.2	-	2	461	c.342_342GC>C	c.(340-342)ggcfs	p.G114fs	IRX4_uc011cmf.1_5'UTR	NM_016358	NP_057442	P78413	IRX4_HUMAN	Homo sapiens iroquois homeobox 4 (IRX4), mRNA.	114					heart development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			endometrium(1)|lung(7)|ovary(1)|prostate(1)	10				GBM - Glioblastoma multiforme(108;0.242)		CTGGTGCCAGGCCCCCATGCG	0.627												
DNAH5	1767	broad.mit.edu	37	5	13753633	13753633	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:13753632_13753632GA>G	uc003jfd.2	-	62	10624	c.10582_10582TC>C	c.(10582-10584)ctafs	p.L3528fs	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	Homo sapiens dynein, axonemal, heavy chain 5 (DNAH5), mRNA.	3528					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			NS(6)|breast(14)|central_nervous_system(4)|cervix(2)|endometrium(23)|haematopoietic_and_lymphoid_tissue(8)|kidney(11)|large_intestine(85)|liver(1)|lung(129)|ovary(16)|pancreas(2)|prostate(5)|skin(48)|stomach(5)|upper_aerodigestive_tract(11)|urinary_tract(8)	378	Lung NSC(4;0.00476)					GAATAAGATAGAAAAGCTGTA	0.363									Kartagener syndrome			
RICTOR	253260	broad.mit.edu	37	5	38975672	38975672	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:38975671_38975671AT>A	uc003jlo.2	-	9	879	c.857_857AT>T	c.(856-858)atgfs	p.M286fs	RICTOR_uc003jlp.2_Frame_Shift_Del_p.M286fs|RICTOR_uc010ivf.2_Frame_Shift_Del_p.M1fs|RICTOR_uc003jlq.1_Frame_Shift_Del_p.M270fs	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	Homo sapiens RPTOR independent companion of MTOR, complex 2 (RICTOR), mRNA.	286					T cell costimulation|actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade	TORC2 complex|cytosol	protein binding			NS(1)|breast(4)|central_nervous_system(2)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(14)|lung(33)|ovary(3)|prostate(3)|skin(5)	75	all_lung(31;0.000396)					TATGATTCCCATTTTACTGGC	0.388												
PARP8	79668	broad.mit.edu	37	5	50123859	50123859	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:50123858_50123858TA>T	uc003jon.4	+	20	2240	c.2058_2058TA>T	c.(2056-2058)gctfs	p.A686fs	PARP8_uc011cpz.2_Frame_Shift_Del_p.A578fs|PARP8_uc003joo.3_Frame_Shift_Del_p.A686fs|PARP8_uc003jop.3_Frame_Shift_Del_p.A644fs	NM_001178055	NP_078891	Q8N3A8	PARP8_HUMAN	Homo sapiens poly (ADP-ribose) polymerase family, member 8 (PARP8), transcript variant 1, mRNA.	686	PARP catalytic.					intracellular	NAD+ ADP-ribosyltransferase activity			breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(10)|lung(23)|ovary(1)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	49		Lung NSC(810;0.0305)|Breast(144;0.222)				TTAGAGCTGCTAAAAAACTCT	0.398												
SLC38A9	153129	broad.mit.edu	37	5	54948375	54948375	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:54948374_54948374GA>G	uc003jqf.2	-	9	1527	c.935_935TC>C	c.(934-936)tcafs	p.S312fs	SLC38A9_uc003jqd.2_Frame_Shift_Del_p.S249fs|SLC38A9_uc010ivx.2_Frame_Shift_Del_p.S285fs|SLC38A9_uc003jqe.2_Non-coding_Transcript|SLC38A9_uc010ivy.2_Frame_Shift_Del_p.S183fs	NM_173514	NP_775785	Q8NBW4	S38A9_HUMAN	Homo sapiens solute carrier family 38, member 9 (SLC38A9), mRNA.	312					amino acid transport|sodium ion transport	integral to membrane				endometrium(1)|kidney(1)|large_intestine(3)|lung(3)	8		Lung NSC(810;0.00122)|Prostate(74;0.0376)|Breast(144;0.181)				ATTAAATTTTGAAAAAAATGA	0.408												
MAP3K1	4214	broad.mit.edu	37	5	56178088	56178089	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:56178087_56178088AAC>A	uc003jqw.4	+	13	3561_3562	c.3060_3061AAC>A	c.(3058-3063)caaacafs	p.Q1020fs		NM_005921	NP_005912	Q13233	M3K1_HUMAN	Homo sapiens mitogen-activated protein kinase kinase kinase 1 (MAP3K1), mRNA.	1020					MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|cellular response to mechanical stimulus|innate immune response|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			NS(1)|breast(19)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(8)|lung(11)|ovary(1)|skin(3)|urinary_tract(1)	57		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		CATCTCCTCAAACACAGCGCAA	0.455												
PIK3R1	5295	broad.mit.edu	37	5	67522741	67522741	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:67522740_67522740GA>G	uc003jva.3	+	1	817	c.237_237GA>G	c.(235-237)aggfs	p.R79fs		NM_181523	NP_852664	P27986	P85A_HUMAN	Homo sapiens phosphoinositide-3-kinase, regulatory subunit 1 (alpha) (PIK3R1), transcript variant 1, mRNA.	79	SH3.				T cell costimulation|T cell receptor signaling pathway|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.0?(1)		breast(12)|central_nervous_system(31)|cervix(1)|endometrium(68)|haematopoietic_and_lymphoid_tissue(5)|kidney(1)|large_intestine(32)|lung(10)|ovary(9)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(2)	178		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	ATATTGGAAGGAAAAAAATCT	0.493			"""Mis, F, O"""		"""gliobastoma, ovarian, colorectal"""					TCGA GBM(4;<1E-08)		
PIK3R1	5295	broad.mit.edu	37	5	67576487	67576488	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:67576486_67576487C>CA	uc003jva.3	+	5	1345_1346	c.765_766C>CA	c.(763-768)agcaaafs	p.S255fs		NM_181523	NP_852664	P27986	P85A_HUMAN	Homo sapiens phosphoinositide-3-kinase, regulatory subunit 1 (alpha) (PIK3R1), transcript variant 1, mRNA.	255	Rho-GAP.				T cell costimulation|T cell receptor signaling pathway|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.0?(1)|p.?(1)		breast(12)|central_nervous_system(31)|cervix(1)|endometrium(68)|haematopoietic_and_lymphoid_tissue(5)|kidney(1)|large_intestine(32)|lung(10)|ovary(9)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(2)	178		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	AAACCTCCAGCAAAAATCTGTT	0.386			"""Mis, F, O"""		"""gliobastoma, ovarian, colorectal"""					TCGA GBM(4;<1E-08)		
CMYA5	202333	broad.mit.edu	37	5	79034436	79034437	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:79034435_79034436T>TG	uc003kgc.3	+	1	9919_9920	c.9847_9848T>TG	c.(9847-9849)tggfs	p.W3283fs		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	Homo sapiens cardiomyopathy associated 5 (CMYA5), mRNA.	3283						perinuclear region of cytoplasm				NS(2)|breast(4)|central_nervous_system(1)|cervix(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(4)|kidney(4)|large_intestine(37)|lung(34)|ovary(6)|pancreas(2)|prostate(5)|skin(5)|stomach(11)|upper_aerodigestive_tract(3)|urinary_tract(1)	128		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGGGGAAATTTGGGGAAAGTTT	0.455												
ANKRD34B	340120	broad.mit.edu	37	5	79854405	79854405	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:79854404_79854404CT>C	uc010jam.3	-	3	1785	c.1435_1435AG>G	c.(1435-1437)gtgfs	p.V479fs	ANKRD34B_uc003kgw.3_Frame_Shift_Del_p.V479fs|ANKRD34B_uc010jan.3_Frame_Shift_Del_p.V479fs|ANKRD34B_uc021yax.1_Frame_Shift_Del_p.V479fs	NM_001004441	NP_001004441	A5PLL1	AN34B_HUMAN	Homo sapiens ankyrin repeat domain 34B (ANKRD34B), mRNA.	479						cytoplasm|nucleus				NS(1)|breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(3)|lung(13)|pancreas(1)|prostate(1)|urinary_tract(1)	28		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-46)|Epithelial(54;5.64e-41)|all cancers(79;3.24e-36)		GGCATAAGCACTTTTTGACCA	0.363												
ANKRD34B	340120	broad.mit.edu	37	5	79854592	79854592	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:79854591_79854591TG>T	uc010jam.3	-	3	1598	c.1248_1248CA>A	c.(1246-1248)ccafs	p.P416fs	ANKRD34B_uc003kgw.3_Frame_Shift_Del_p.P416fs|ANKRD34B_uc010jan.3_Frame_Shift_Del_p.P416fs|ANKRD34B_uc021yax.1_Frame_Shift_Del_p.P416fs	NM_001004441	NP_001004441	A5PLL1	AN34B_HUMAN	Homo sapiens ankyrin repeat domain 34B (ANKRD34B), mRNA.	416						cytoplasm|nucleus				NS(1)|breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(3)|lung(13)|pancreas(1)|prostate(1)|urinary_tract(1)	28		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-46)|Epithelial(54;5.64e-41)|all cancers(79;3.24e-36)		TCAGGGGACCTGGGGGGATAT	0.463												
CETN3	1070	broad.mit.edu	37	5	89701581	89701581	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:89701580_89701580CT>C	uc003kjo.3	-	2	315	c.190_190AG>G	c.(190-192)gctfs	p.A64fs		NM_004365	NP_004356	O15182	CETN3_HUMAN	Homo sapiens centrin, EF-hand protein, 3 (CETN3), mRNA.	64	EF-hand 2.				cell division|centrosome cycle|mitosis	centriole	calcium ion binding			lung(3)	3		all_cancers(142;7.93e-09)|all_epithelial(76;2.13e-11)|Lung NSC(167;2.46e-05)|all_lung(232;3.25e-05)|Ovarian(174;0.00832)|Colorectal(57;0.122)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(54;1.42e-32)|Epithelial(54;1.45e-26)|all cancers(79;2.87e-23)		AGTACATCAGCTTTTTTTACA	0.313												
FAM81B	153643	broad.mit.edu	37	5	94784099	94784099	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:94784098_94784098CA>C	uc003kla.1	+	8	1201	c.1155_1155CA>C	c.(1153-1155)tccfs	p.S385fs	FAM81B_uc010jbe.1_Frame_Shift_Del_p.S181fs	NM_152548	NP_689761	Q96LP2	FA81B_HUMAN	Homo sapiens family with sequence similarity 81, member B (FAM81B), mRNA.	385										central_nervous_system(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(4)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	22		all_cancers(142;1.1e-06)|all_epithelial(76;1.48e-09)|all_lung(232;0.000696)|Lung NSC(167;0.000947)|Ovarian(225;0.00473)		all cancers(79;1.04e-16)		ATAAATTGTCCAAAAAGATGG	0.333												
FER	2241	broad.mit.edu	37	5	108219101	108219101	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:108219100_108219100GA>G	uc003kop.1	+	8	1311	c.927_927GA>G	c.(925-927)ttgfs	p.L309fs	FER_uc011cvf.1_Intron|FER_uc011cvg.1_Frame_Shift_Del_p.L134fs	NM_005246	NP_005237	P16591	FER_HUMAN	Homo sapiens fer (fps/fes related) tyrosine kinase (FER), mRNA.	309					intracellular signal transduction|peptidyl-tyrosine phosphorylation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			NS(2)|biliary_tract(1)|endometrium(1)|kidney(2)|large_intestine(8)|lung(12)|ovary(1)|skin(2)|stomach(1)|urinary_tract(2)	32		all_cancers(142;2.86e-06)|all_epithelial(76;9.81e-08)|Prostate(80;0.00972)|Lung NSC(167;0.039)|Ovarian(225;0.0448)|all_lung(232;0.0496)|Colorectal(57;0.0986)|Breast(839;0.152)		OV - Ovarian serous cystadenocarcinoma(64;6.77e-10)|Epithelial(69;4.13e-08)|COAD - Colon adenocarcinoma(37;0.0174)		ATTCTAGGTTGAAAACGTTAG	0.323												
MAN2A1	4124	broad.mit.edu	37	5	109117120	109117120	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:109117119_109117119AT>A	uc003kou.1	+	8	2360	c.1397_1397AT>A	c.(1396-1398)gatfs	p.D466fs		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	Homo sapiens mannosidase, alpha, class 2A, member 1 (MAN2A1), mRNA.	466					mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			breast(2)|central_nervous_system(2)|endometrium(7)|kidney(2)|large_intestine(13)|lung(20)|ovary(3)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	55		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		ACTTTATCAGATTTTTTTGAT	0.328												
AQPEP	206338	broad.mit.edu	37	5	115338562	115338562	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:115338561_115338561TA>T	uc003kro.3	+	10	2014	c.1850_1850TA>T	c.(1849-1851)atafs	p.I617fs	AQPEP_uc003krp.3_Non-coding_Transcript|AQPEP_uc003krs.3_Non-coding_Transcript|AQPEP_uc003krq.3_Non-coding_Transcript|AQPEP_uc003krr.3_Non-coding_Transcript	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	Homo sapiens laeverin (AQPEP), mRNA.	617					proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding										ATTCTTTGGATAAAAAATGGA	0.303												
PDLIM4	8572	broad.mit.edu	37	5	131606779	131606779	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:131606778_131606778AC>A	uc003kwo.3	+	3	575	c.498_498AC>A	c.(496-498)ccafs	p.P166fs	BC030525_uc003kwm.4_Intron|PDLIM4_uc003kwn.3_Frame_Shift_Del_p.P166fs|PDLIM4_uc003kwp.3_Frame_Shift_Del_p.P166fs	NM_003687	NP_003678	P50479	PDLI4_HUMAN	Homo sapiens PDZ and LIM domain 4 (PDLIM4), transcript variant 1, mRNA.	166							protein binding|zinc ion binding			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(2)|ovary(2)|urinary_tract(1)	10			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ATGTGTCTCCACCCCCCAGGT	0.592												
IRF1	3659	broad.mit.edu	37	5	131822004	131822005	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:131822003_131822004GCA>G	uc003kxa.2	-	6	840_841	c.606_607TGC>C	c.(604-609)gtgccgfs	p.V202fs	C5orf56_uc010jds.2_Frame_Shift_Del_p.G55fs|IRF1_uc003kxd.2_Intron|IRF1_uc003kxb.2_Frame_Shift_Del_p.V202fs|IRF1_uc010jdt.2_Frame_Shift_Del_p.V202fs	NM_002198	NP_002189	P10914	IRF1_HUMAN	Homo sapiens interferon regulatory factor 1 (IRF1), mRNA.	202					blood coagulation|cellular response to mechanical stimulus|interferon-gamma-mediated signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	nucleoplasm				cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(1)|lung(2)|prostate(2)|skin(1)|urinary_tract(1)	11		all_cancers(142;0.026)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	LUAD - Lung adenocarcinoma(142;0.247)		GTGCTGTCCGGCACAACTTCCA	0.594												
CDKL3	51265	broad.mit.edu	37	5	133634349	133634349	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:133634348_133634348GA>G	uc003kzf.4	-	12	1892	c.1773_1773TC>C	c.(1771-1773)ttcfs	p.F591fs	CDKL3_uc011cxm.1_Intron|CDKL3_uc011cxn.1_Intron|CDKL3_uc010jdw.2_Intron|CDKL3_uc011cxo.1_Intron|CDKL3_uc011cxp.1_Intron|CDKL3_uc011cxq.2_3'UTR	NM_001113575	NP_001107047	Q8IVW4	CDKL3_HUMAN	Homo sapiens cyclin-dependent kinase-like 3 (CDKL3), transcript variant 1, mRNA.	591						cytoplasm	ATP binding|cyclin-dependent protein kinase activity			breast(1)|central_nervous_system(1)|endometrium(1)|large_intestine(2)|lung(3)|prostate(3)	11			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GACACTACCAGAAAAAAAACC	0.358												
HARS	3035	broad.mit.edu	37	5	140057538	140057538	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140057537_140057537AC>A	uc003lgv.3	-	5	668	c.586_586GT>T	c.(586-588)tgcfs	p.C196fs	HARS_uc003lgu.3_Frame_Shift_Del_p.C127fs|HARS_uc011czm.2_Frame_Shift_Del_p.C156fs|HARS_uc003lgw.3_Frame_Shift_Del_p.C176fs|HARS_uc011czn.2_Frame_Shift_Del_p.C136fs|HARS_uc011czo.2_Frame_Shift_Del_p.C122fs|HARS_uc011czp.2_Frame_Shift_Del_p.C82fs|HARS_uc011czq.2_Intron	NM_002109	NP_002100	P12081	SYHC_HUMAN	Homo sapiens histidyl-tRNA synthetase (HARS), mRNA.	196					histidyl-tRNA aminoacylation	cytosol	ATP binding|histidine-tRNA ligase activity			NS(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(8)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)	19			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		L-Histidine(DB00117)	AGGATCTCGCACATGATCTTC	0.532												
PCDHAC2	56134	broad.mit.edu	37	5	140181371	140181372	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:140181370_140181371G>GA	uc003lhf.2	+	0	588_589	c.588_589G>GA	c.(586-591)ttgaaafs	p.L196fs	PCDHAC2_uc003lha.2_Intron|PCDHAC2_uc003lhb.2_Intron|PCDHAC2_uc003lhd.2_Intron|PCDHAC2_uc011czy.2_Intron|PCDHAC2_uc011czz.2_Frame_Shift_Ins_p.L196fs	NM_018906	NP_061729	Q9Y5I4	PCDC2_HUMAN	Homo sapiens protocadherin alpha 3 (PCDHA3), transcript variant 1, mRNA.	211	Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			NS(1)|breast(1)|endometrium(4)|kidney(4)|large_intestine(10)|liver(2)|lung(9)|ovary(2)|prostate(1)|skin(7)|upper_aerodigestive_tract(3)|urinary_tract(1)	45			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACTCGTGTTGAAAAAAAATTT	0.361												
FAT2	2196	broad.mit.edu	37	5	150905452	150905452	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:150905451_150905451AG>A	uc003lue.4	-	16	10397	c.10384_10384CT>T	c.(10384-10386)tacfs	p.Y3462fs	FAT2_uc003lud.4_Frame_Shift_Del_p.Y155fs	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	Homo sapiens FAT tumor suppressor homolog 2 (Drosophila) (FAT2), mRNA.	3462	Cadherin 31.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding	p.P3461T(1)		NS(6)|breast(3)|central_nervous_system(3)|cervix(5)|endometrium(15)|haematopoietic_and_lymphoid_tissue(4)|kidney(8)|large_intestine(61)|liver(1)|lung(60)|ovary(6)|prostate(5)|skin(5)|stomach(2)|upper_aerodigestive_tract(11)|urinary_tract(1)	196		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CGAAACGAGTAGGGGGGGCCA	0.582												
RNF145	153830	broad.mit.edu	37	5	158596066	158596066	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:158596065_158596065TA>T	uc010jiq.2	-	8	1179	c.1029_splice	c.e8-1	p.R343_splice	RNF145_uc011ddy.2_Splice_Site_p.R327_splice|RNF145_uc003lxo.2_Splice_Site_p.R341_splice|RNF145_uc011ddz.2_Splice_Site_p.R330_splice|RNF145_uc003lxp.3_Splice_Site_p.R313_splice|RNF145_uc011dea.2_Intron	NM_001199380	NP_001186309	Q96MT1	RN145_HUMAN	Homo sapiens ring finger protein 145 (RNF145), transcript variant 1, mRNA.	313						integral to membrane	zinc ion binding			endometrium(7)|kidney(2)|large_intestine(5)|lung(9)|ovary(3)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	30	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTCATGCCCCTAAAAAAAGCA	0.363												
GABRB2	2561	broad.mit.edu	37	5	160757965	160757965	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:160757964_160757964GC>G	uc003lys.1	-	8	1221	c.1003_1003GC>C	c.(1003-1005)cccfs	p.P335fs	GABRB2_uc011deh.1_Frame_Shift_Del_p.P174fs|GABRB2_uc003lyr.1_Frame_Shift_Del_p.P335fs|GABRB2_uc003lyt.1_Frame_Shift_Del_p.P335fs|GABRB2_uc021yhg.1_Frame_Shift_Del_p.P272fs	NM_021911	NP_068711	P47870	GBRB2_HUMAN	Homo sapiens gamma-aminobutyric acid (GABA) A receptor, beta 2 (GABRB2), transcript variant 1, mRNA.	335					gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	GABA-A receptor activity|chloride channel activity			breast(1)|central_nervous_system(1)|endometrium(2)|large_intestine(6)|liver(1)|lung(9)|soft_tissue(1)|upper_aerodigestive_tract(2)|urinary_tract(3)	26	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TGGCGTTGGGGCCCCCTCCCA	0.507												
SH3PXD2B	285590	broad.mit.edu	37	5	171774309	171774309	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:171774308_171774308AG>A	uc003mbr.3	-	10	1212	c.1041_1041CT>T	c.(1039-1041)cctfs	p.P347fs		NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	Homo sapiens SH3 and PX domains 2B (SH3PXD2B), mRNA.	347					adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	SH2 domain binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding			NS(1)|breast(1)|endometrium(1)|kidney(3)|large_intestine(9)|lung(12)|ovary(3)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)	36	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CCCGGCGAGGAGGGGGTCTCT	0.562												
AGXT2L2	85007	broad.mit.edu	37	5	177651540	177651540	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:177651539_177651539GC>G	uc003miz.3	-	5	780	c.528_528GC>C	c.(526-528)ggcfs	p.G176fs	AGXT2L2_uc003miy.3_5'UTR|AGXT2L2_uc003mjc.3_Frame_Shift_Del_p.G135fs|AGXT2L2_uc003mjb.3_Intron|AGXT2L2_uc003mja.3_Non-coding_Transcript|AGXT2L2_uc003mjd.1_Frame_Shift_Del_p.G34fs	NM_153373	NP_699204	Q8IUZ5	AT2L2_HUMAN	Homo sapiens alanine-glyoxylate aminotransferase 2-like 2 (AGXT2L2), mRNA.	176						mitochondrion	pyridoxal phosphate binding|transaminase activity			breast(1)|endometrium(2)|large_intestine(1)|pancreas(1)|prostate(1)	6	all_cancers(89;0.00185)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.181)|all cancers(165;0.235)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	CCCGGTAGGGGCCCCGGTAGG	0.617												
ZNF354A	6940	broad.mit.edu	37	5	178140425	178140425	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:178140424_178140424AT>A	uc003mjj.3	-	4	653	c.455_455AT>T	c.(454-456)atcfs	p.I152fs		NM_005649	NP_005640	O60765	Z354A_HUMAN	Homo sapiens zinc finger protein 354A (ZNF354A), mRNA.	152					regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|endometrium(2)|large_intestine(7)|lung(3)|ovary(2)|skin(2)|stomach(2)	19	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		TATAGTGGGGATTTTTTTGTG	0.358												
HNRNPH1	3187	broad.mit.edu	37	5	179050041	179050041	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:179050040_179050040GA>G	uc021yjd.1	-	0	126	c.95_95TC>C	c.(94-96)tctfs	p.S32fs	HNRNPH1_uc003mkf.4_Frame_Shift_Del_p.S32fs|HNRNPH1_uc003mkg.4_5'UTR|HNRNPH1_uc003mke.4_Frame_Shift_Del_p.S32fs|HNRNPH1_uc003mkh.4_Frame_Shift_Del_p.S32fs|HNRNPH1_uc021yje.1_5'Flank	NM_005520	NP_005511	P31943	HNRH1_HUMAN	Homo sapiens heterogeneous nuclear ribonucleoprotein H1 (H) (HNRNPH1), mRNA.	32	RRM 1.				regulation of RNA splicing	actin cytoskeleton|catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|poly(U) RNA binding|protein binding			breast(1)|cervix(1)|endometrium(2)|kidney(3)|large_intestine(2)|lung(4)|skin(1)	14						TAACTCACCAGAAAAAAACCT	0.687												
BTNL8	79908	broad.mit.edu	37	5	180374580	180374580	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr5:180374579_180374579AT>A	uc003mmp.3	+	3	975	c.741_741AT>A	c.(739-741)ctafs	p.L247fs	BTNL8_uc003mmq.3_Frame_Shift_Del_p.L247fs|BTNL8_uc010jll.3_Frame_Shift_Del_p.L247fs|BTNL8_uc011dhg.2_Frame_Shift_Del_p.L122fs|BTNL8_uc010jlm.3_Frame_Shift_Del_p.L131fs|BTNL8_uc011dhh.2_Frame_Shift_Del_p.L63fs	NM_001040462	NP_001153182	Q6UX41	BTNL8_HUMAN	Homo sapiens butyrophilin-like 8 (BTNL8), transcript variant 2, mRNA.	247						integral to membrane				breast(1)|endometrium(4)|kidney(2)|large_intestine(4)|lung(12)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)	28	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCTGTGGCCTATTTTTTGGCA	0.443												
CDYL	9425	broad.mit.edu	37	6	4943960	4943961	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:4943959_4943960TTA>T	uc003mwi.3	+	6	1594_1595	c.1463_1464TTA>T	c.(1462-1464)gttfs	p.V488fs	CDYL_uc003mwj.3_Frame_Shift_Del_p.V434fs|CDYL_uc003mwk.3_Frame_Shift_Del_p.V199fs|CDYL_uc011dhx.2_Frame_Shift_Del_p.V302fs|CDYL_uc011dhy.2_Frame_Shift_Del_p.V302fs	NM_001143971	NP_001137443	Q9Y232	CDYL1_HUMAN	Homo sapiens chromodomain protein, Y-like (CDYL), transcript variant 5, mRNA.	488					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	histone acetyltransferase activity			breast(2)|kidney(2)|large_intestine(9)|lung(13)|skin(1)|stomach(2)|urinary_tract(1)	30	Ovarian(93;0.11)	all_hematologic(90;0.0901)|Lung NSC(90;0.244)		OV - Ovarian serous cystadenocarcinoma(45;0.182)		TGTTCTACCGTTATGTTTCCCA	0.391												
HIVEP1	3096	broad.mit.edu	37	6	12164370	12164371	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:12164369_12164370C>CA	uc003nac.3	+	8	8011_8012	c.7832_7833C>CA	c.(7831-7833)gcafs	p.A2611fs	HIVEP1_uc011diq.2_Non-coding_Transcript	NM_002114	NP_002105	P15822	ZEP1_HUMAN	Homo sapiens human immunodeficiency virus type I enhancer binding protein 1 (HIVEP1), mRNA.	2611					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			NS(1)|breast(5)|central_nervous_system(1)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(3)|kidney(8)|large_intestine(11)|liver(1)|lung(31)|ovary(4)|prostate(1)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(3)	90	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				CGGGAAAATGCAAAAAAAGTTC	0.540												
RNF182	221687	broad.mit.edu	37	6	13977682	13977682	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:13977681_13977681AC>A	uc021ylw.1	+	2	824	c.331_331AC>A	c.(331-333)accfs	p.T111fs	RNF182_uc021ylx.1_Frame_Shift_Del_p.T111fs|RNF182_uc003nbe.3_Frame_Shift_Del_p.T111fs|RNF182_uc003nbf.3_Frame_Shift_Del_p.T111fs|RNF182_uc003nbg.3_Frame_Shift_Del_p.T111fs|RNF182_uc021yly.1_Frame_Shift_Del_p.T111fs	NM_001165034	NP_689950	Q8N6D2	RN182_HUMAN	Homo sapiens ring finger protein 182 (RNF182), transcript variant 4, mRNA.	111						cytoplasm|integral to membrane|intracellular membrane-bounded organelle	protein binding|ubiquitin-protein ligase activity|zinc ion binding			cervix(1)|large_intestine(7)|liver(2)|lung(2)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)	15	Breast(50;0.00405)|Ovarian(93;0.0964)	all_hematologic(90;0.135)	Epithelial(50;0.195)			GCTGCTGCTCACCCCCAAGAG	0.552												
KIF13A	63971	broad.mit.edu	37	6	17837308	17837308	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:17837307_17837307GC>G	uc003ncg.4	-	10	1117	c.957_957GC>C	c.(955-957)ggcfs	p.G319fs	KIF13A_uc003ncf.3_Frame_Shift_Del_p.G319fs|KIF13A_uc003nch.4_Frame_Shift_Del_p.G319fs|KIF13A_uc003nci.4_Frame_Shift_Del_p.G319fs|KIF13A_uc003ncj.3_5'UTR	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	Homo sapiens kinesin family member 13A (KIF13A), transcript variant 1, mRNA.	319					Golgi to plasma membrane protein transport|cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			breast(3)|cervix(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(19)|lung(16)|ovary(2)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	64	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			TTTGGCTGTTGCCCCCCAAGT	0.453												
SLC17A2	10246	broad.mit.edu	37	6	25921520	25921521	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:25921519_25921520A>AT	uc011dkb.2	-	2	444_445	c.361_362T>AT	c.(361-363)atgfs	p.M121fs	SLC17A2_uc011dkc.2_Frame_Shift_Ins_p.M121fs|SLC17A2_uc003nfl.3_Frame_Shift_Ins_p.M121fs			O00624	NPT3_HUMAN	Homo sapiens solute carrier family 17 (sodium phosphate), member 2 (SLC17A2), mRNA.	121					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity	p.M121fs*7(2)		endometrium(3)|kidney(1)|large_intestine(9)|lung(12)|ovary(2)|skin(3)|upper_aerodigestive_tract(1)	31						AGCACCAAGCATTTTTTTTGCT	0.455												
PPP1R11	6992	broad.mit.edu	37	6	30037082	30037082	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:30037081_30037081TA>T	uc003npb.3	+	2	635	c.379_379TA>T	c.(379-381)taafs	p.*127fs	PPP1R11_uc010jrw.3_Non-coding_Transcript|PPP1R11_uc003npc.3_Non-coding_Transcript	NM_021959	NP_068778	O60927	PP1RB_HUMAN	Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 11 (PPP1R11), mRNA.	0						soluble fraction	protein binding|protein phosphatase inhibitor activity			lung(2)|ovary(1)|prostate(1)|skin(2)	6						AATGCAGCACTAAATCCCTCT	0.612												
HLA-C	3107	broad.mit.edu	37	6	31323363	31323364	+	Frame_Shift_Ins	INS	-	-	G	rs77061046		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:31323362_31323363T>TG	uc003nth.2	-	3	680_681	c.626_627A>CA	c.(625-627)ccafs	p.P209fs	HLA-C_uc003ntf.2_Intron|HLA-C_uc003ntg.1_Frame_Shift_Ins_p.P88fs|HLA-C_uc003nti.1_Non-coding_Transcript|HLA-C_uc010jsn.1_Non-coding_Transcript|HLA-C_uc010jso.2_3'UTR|HLA-C_uc021yum.1_3'UTR	NM_005514	NP_005505	Q9TNN7	1C05_HUMAN	Homo sapiens major histocompatibility complex, class I, B (HLA-B), mRNA.	209	Alpha-3.|Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	MHC class I protein complex|integral to membrane				central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(2)|lung(4)|prostate(4)|skin(2)|upper_aerodigestive_tract(1)	17						CGTGTGTCTTTGGGGGGTCTGA	0.579												
NFKBIL1	4795	broad.mit.edu	37	6	31525506	31525506	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:31525505_31525505AC>A	uc003nub.3	+	2	554	c.435_435AC>A	c.(433-435)ggafs	p.G145fs	NFKBIL1_uc011dnr.2_Frame_Shift_Del_p.G122fs|NFKBIL1_uc011dns.2_Frame_Shift_Del_p.G122fs|NFKBIL1_uc011dnt.1_Non-coding_Transcript|NFKBIL1_uc003nuc.3_Frame_Shift_Del_p.G145fs	NM_005007	NP_001138434	Q9UBC1	IKBL1_HUMAN	Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 (NFKBIL1), transcript variant 1, mRNA.	145					cytoplasmic sequestering of transcription factor		protein binding			breast(1)|endometrium(2)|large_intestine(1)|lung(2)|skin(1)	7						TGGGCTGGGGACCCCCCTGGG	0.582												
TNF	7124	broad.mit.edu	37	6	31543582	31543582	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:31543581_31543581AG>A	uc003nui.3	+	0	232	c.63_63AG>A	c.(61-63)acafs	p.T21fs	TNF_uc003nuj.3_5'Flank	NM_000594	NP_000585	P01375	TNFA_HUMAN	Homo sapiens tumor necrosis factor (TNF), mRNA.	21					activation of MAPK activity|activation of MAPKKK activity|activation of caspase activity|anti-apoptosis|cellular response to nicotine|chronic inflammatory response to antigenic stimulus|embryonic digestive tract development|induction of apoptosis via death domain receptors|induction of necroptosis by extracellular signals|leukocyte tethering or rolling|necrotic cell death|negative regulation of branching involved in lung morphogenesis|negative regulation of cytokine secretion involved in immune response|negative regulation of fat cell differentiation|negative regulation of interleukin-6 production|negative regulation of lipid catabolic process|negative regulation of lipid storage|negative regulation of viral genome replication|positive regulation of ERK1 and ERK2 cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of NFAT protein import into nucleus|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of chemokine biosynthetic process|positive regulation of chemokine production|positive regulation of cytokine secretion|positive regulation of fever generation|positive regulation of heterotypic cell-cell adhesion|positive regulation of membrane protein ectodomain proteolysis|positive regulation of nitric oxide biosynthetic process|positive regulation of osteoclast differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of podosome assembly|positive regulation of protein complex disassembly|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of vitamin D biosynthetic process|protein import into nucleus, translocation|receptor biosynthetic process|regulation of insulin secretion|response to glucocorticoid stimulus|response to salt stress|response to virus|sequestering of triglyceride|transformed cell apoptosis|tumor necrosis factor-mediated signaling pathway	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane raft|phagocytic cup|recycling endosome	cytokine activity|identical protein binding|protease binding|transcription regulatory region DNA binding|tumor necrosis factor receptor binding			large_intestine(1)|lung(2)|ovary(1)|pancreas(1)|skin(3)	8		Ovarian(999;0.00556)			Adalimumab(DB00051)|Adenosine(DB00640)|Amrinone(DB01427)|Atorvastatin(DB01076)|Chloroquine(DB00608)|Clenbuterol(DB01407)|Etanercept(DB00005)|Glucosamine(DB01296)|Infliximab(DB00065)|Naltrexone(DB00704)|Pranlukast(DB01411)|Procaterol(DB01366)|Saquinavir(DB01232)|Simvastatin(DB00641)|Thalidomide(DB01041)	CCAAGAAGACAGGGGGGCCCC	0.642									Naso-/Oropharyngeal/Laryngeal Cancer, Familial Clustering of			
TNF	7124	broad.mit.edu	37	6	31544976	31544984	+	In_Frame_Del	DEL	AACCAGCTG	AACCAGCTG	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:31544975_31544983TAACCAGCTG>T	uc003nui.3	+	3	532_540	c.363_371TAACCAGCTG>T	c.(361-372)gataaccagctg>gaTg	p.NQL122del	TNF_uc003nuj.3_5'UTR	NM_000594	NP_000585	P01375	TNFA_HUMAN	Homo sapiens tumor necrosis factor (TNF), mRNA.	122					activation of MAPK activity|activation of MAPKKK activity|activation of caspase activity|anti-apoptosis|cellular response to nicotine|chronic inflammatory response to antigenic stimulus|embryonic digestive tract development|induction of apoptosis via death domain receptors|induction of necroptosis by extracellular signals|leukocyte tethering or rolling|necrotic cell death|negative regulation of branching involved in lung morphogenesis|negative regulation of cytokine secretion involved in immune response|negative regulation of fat cell differentiation|negative regulation of interleukin-6 production|negative regulation of lipid catabolic process|negative regulation of lipid storage|negative regulation of viral genome replication|positive regulation of ERK1 and ERK2 cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of NFAT protein import into nucleus|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of chemokine biosynthetic process|positive regulation of chemokine production|positive regulation of cytokine secretion|positive regulation of fever generation|positive regulation of heterotypic cell-cell adhesion|positive regulation of membrane protein ectodomain proteolysis|positive regulation of nitric oxide biosynthetic process|positive regulation of osteoclast differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of podosome assembly|positive regulation of protein complex disassembly|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of vitamin D biosynthetic process|protein import into nucleus, translocation|receptor biosynthetic process|regulation of insulin secretion|response to glucocorticoid stimulus|response to salt stress|response to virus|sequestering of triglyceride|transformed cell apoptosis|tumor necrosis factor-mediated signaling pathway	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane raft|phagocytic cup|recycling endosome	cytokine activity|identical protein binding|protease binding|transcription regulatory region DNA binding|tumor necrosis factor receptor binding	p.D121N(1)		large_intestine(1)|lung(2)|ovary(1)|pancreas(1)|skin(3)	8		Ovarian(999;0.00556)			Adalimumab(DB00051)|Adenosine(DB00640)|Amrinone(DB01427)|Atorvastatin(DB01076)|Chloroquine(DB00608)|Clenbuterol(DB01407)|Etanercept(DB00005)|Glucosamine(DB01296)|Infliximab(DB00065)|Naltrexone(DB00704)|Pranlukast(DB01411)|Procaterol(DB01366)|Saquinavir(DB01232)|Simvastatin(DB00641)|Thalidomide(DB01041)	AGCTGAGAGATAACCAGCTGGTGGTGCCA	0.627									Naso-/Oropharyngeal/Laryngeal Cancer, Familial Clustering of			
RGL2	5863	broad.mit.edu	37	6	33263965	33263966	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:33263964_33263965G>GC	uc003odv.3	-	5	1168_1169	c.608_609C>GC	c.(607-609)ggcfs	p.G203fs	RGL2_uc003odu.3_5'UTR|RGL2_uc010jur.3_Intron|RGL2_uc003odw.3_Frame_Shift_Ins_p.G121fs|RGL2_uc011drb.2_Frame_Shift_Ins_p.G121fs	NM_004761	NP_001230667	O15211	RGL2_HUMAN	Homo sapiens ral guanine nucleotide dissociation stimulator-like 2 (RGL2), transcript variant 1, mRNA.	203	N-terminal Ras-GEF.				Ras protein signal transduction|regulation of small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity			breast(2)|cervix(2)|endometrium(7)|kidney(2)|lung(14)|ovary(1)|pancreas(1)|prostate(1)|skin(3)|urinary_tract(1)	34						GGTCAGCGCTGCCCCCCCCAAC	0.653												
KCTD20	222658	broad.mit.edu	37	6	36452576	36452576	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:36452575_36452575TA>T	uc003ome.3	+	6	1332	c.941_941TA>T	c.(940-942)ctafs	p.L314fs	KCTD20_uc011dtn.2_Frame_Shift_Del_p.L68fs|KCTD20_uc010jwk.3_Frame_Shift_Del_p.L148fs|KCTD20_uc011dto.2_Frame_Shift_Del_p.L68fs|KCTD20_uc011dtm.2_Frame_Shift_Del_p.L169fs	NM_173562	NP_775833	Q7Z5Y7	KCD20_HUMAN	Homo sapiens potassium channel tetramerisation domain containing 20 (KCTD20), mRNA.	314						voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(5)|ovary(2)|skin(1)	15						GAACGGGGCCTAAAAAACATT	0.338												
STK38	11329	broad.mit.edu	37	6	36463593	36463593	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:36463592_36463592GC>G	uc003omg.3	-	12	1955	c.1367_1367GC>C	c.(1366-1368)gcafs	p.A456fs	STK38_uc003omh.3_Frame_Shift_Del_p.A456fs|STK38_uc003omi.3_Frame_Shift_Del_p.A456fs	NM_007271	NP_009202	Q15208	STK38_HUMAN	Homo sapiens serine/threonine kinase 38 (STK38), mRNA.	456					intracellular protein kinase cascade|negative regulation of MAP kinase activity	MLL5-L complex|cytoplasm	ATP binding|magnesium ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity			NS(1)|endometrium(4)|large_intestine(2)|lung(9)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	22						GGAAGGTATTGCCCCCCTTGC	0.458												
DNAH8	1769	broad.mit.edu	37	6	38738314	38738314	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:38738313_38738313CT>C	uc021yzh.1	+	11	1851	c.1742_1742CT>C	c.(1741-1743)gctfs	p.A581fs	DNAH8_uc003ooe.2_Frame_Shift_Del_p.A364fs	NM_001206927	NP_001193856			Homo sapiens dynein, axonemal, heavy chain 8 (DNAH8), mRNA.											NS(7)|breast(9)|central_nervous_system(4)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(3)|kidney(16)|large_intestine(44)|liver(4)|lung(101)|ovary(7)|pancreas(2)|prostate(8)|skin(28)|stomach(4)|upper_aerodigestive_tract(6)|urinary_tract(4)	260						AAATTTGAAGCTTTTTGCAAA	0.363												
TREML2	79865	broad.mit.edu	37	6	41166037	41166039	+	In_Frame_Del	DEL	CTT	CTT	-	rs66965554		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:41166036_41166038ACTT>A	uc010jxm.1	-	1	364_366	c.185_187AAGT>T	c.(184-189)aagtgt>aTgt	p.62_63KC>M		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	Homo sapiens triggering receptor expressed on myeloid cells-like 2 (TREML2), mRNA.	62	Ig-like V-type.				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity	p.P62T(1)|p.P62L(1)		breast(1)|central_nervous_system(1)|large_intestine(1)|lung(13)|ovary(1)|prostate(1)	18	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCAGGCTCACACTTCTTCTTCCT	0.567												
FRS3	10817	broad.mit.edu	37	6	41739249	41739249	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:41739248_41739248CG>C	uc003orc.1	-	6	832	c.588_588CG>G	c.(586-588)ccgfs	p.P196fs		NM_006653	NP_006644	O43559	FRS3_HUMAN	Homo sapiens fibroblast growth factor receptor substrate 3 (FRS3), mRNA.	196					fibroblast growth factor receptor signaling pathway	plasma membrane	fibroblast growth factor receptor binding|insulin receptor binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(4)|ovary(2)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	14	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;8.38e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CTTCACTGGCCGGTGTGTTGA	0.632												
TRERF1	55809	broad.mit.edu	37	6	42196265	42196266	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:42196264_42196265G>GC	uc003ose.2	-	17	4044_4045	c.3481_3482C>GC	c.(3481-3483)gcgfs	p.A1161fs	TRERF1_uc011duq.1_Frame_Shift_Ins_p.A1058fs|TRERF1_uc003osb.2_Frame_Shift_Ins_p.A909fs|TRERF1_uc003osc.2_Frame_Shift_Ins_p.A897fs|TRERF1_uc003osd.2_Frame_Shift_Ins_p.A1141fs	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	Homo sapiens transcriptional regulating factor 1 (TRERF1), mRNA.	1141	Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|RNA polymerase II transcription cofactor activity|ligand-dependent nuclear receptor transcription coactivator activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			breast(1)|central_nervous_system(2)|endometrium(7)|kidney(1)|large_intestine(12)|lung(13)|ovary(3)|pancreas(1)|skin(3)|urinary_tract(2)	45	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CAGCCCCGGCGCCCCCACGGGC	0.609												
KIAA0240	23506	broad.mit.edu	37	6	42832627	42832627	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:42832626_42832626TA>T	uc003osn.1	+	12	2833	c.2682_2682TA>T	c.(2680-2682)tctfs	p.S894fs	KIAA0240_uc011duw.1_Frame_Shift_Del_p.S894fs|KIAA0240_uc003osp.1_Frame_Shift_Del_p.S894fs	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	Homo sapiens KIAA0240 (KIAA0240), mRNA.	894										NS(1)|breast(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(7)|lung(22)|ovary(1)|prostate(3)|skin(3)	44	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			GAAACATTTCTAAAAAAACAG	0.493												
CYP39A1	51302	broad.mit.edu	37	6	46607340	46607340	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:46607339_46607339AT>A	uc003oyf.1	-	2	584	c.380_380AT>T	c.(379-381)atgfs	p.M127fs	CYP39A1_uc011dwa.1_Frame_Shift_Del_p.M107fs|CYP39A1_uc010jzd.1_Intron	NM_016593	NP_057677	Q9NYL5	CP39A_HUMAN	Homo sapiens cytochrome P450, family 39, subfamily A, polypeptide 1 (CYP39A1), mRNA.	127					bile acid biosynthetic process|bile acid catabolic process|digestion|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	24-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity		EIF3K/CYP39A1(2)	NS(1)|endometrium(2)|kidney(2)|large_intestine(5)|lung(6)|ovary(1)|prostate(2)|skin(2)	21						GACAGTCCCCATTTTCCCTTT	0.363												
CENPQ	55166	broad.mit.edu	37	6	49438702	49438703	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:49438701_49438702G>GA	uc003ozh.1	+	2	206_207	c.117_118G>GA	c.(115-120)gtgaaafs	p.V39fs		NM_018132	NP_060602	Q7L2Z9	CENPQ_HUMAN	Homo sapiens centromere protein Q (CENPQ), mRNA.	39					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	chromosome, centromeric region|cytosol|nucleoplasm				central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|lung(4)|ovary(2)|prostate(1)	11	Lung NSC(77;0.0128)					GAAACACAGTGAAAAAAAATAA	0.292												
EFHC1	114327	broad.mit.edu	37	6	52334208	52334208	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:52334207_52334207CA>C	uc003pap.4	+	6	1429	c.1214_1214CA>C	c.(1213-1215)ccafs	p.P405fs	EFHC1_uc011dwv.1_Frame_Shift_Del_p.P314fs|EFHC1_uc011dww.2_Frame_Shift_Del_p.P386fs	NM_018100	NP_060570	Q5JVL4	EFHC1_HUMAN	Homo sapiens EF-hand domain (C-terminal) containing 1 (EFHC1), transcript variant A, mRNA.	405						axoneme|neuronal cell body	calcium ion binding|protein C-terminus binding			breast(3)|central_nervous_system(1)|endometrium(4)|large_intestine(8)|lung(6)|ovary(2)|pancreas(1)|prostate(1)|skin(1)	27	Lung NSC(77;0.109)					CCAAAAGCTCCAAAAAAAGAC	0.373												
GSTA2	2939	broad.mit.edu	37	6	52616455	52616456	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:52616454_52616455G>GC	uc003pay.3	-	5	616_617	c.466_467C>GC	c.(466-468)gctfs	p.A156fs		NM_000846	NP_000837	P09210	GSTA2_HUMAN	Homo sapiens glutathione S-transferase alpha 2 (GSTA2), mRNA.	156	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity	p.R155L(1)		breast(1)|endometrium(1)|kidney(2)|large_intestine(1)|lung(4)|ovary(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	16	Lung NSC(77;0.118)				Aminophenazone(DB01424)|Amsacrine(DB00276)|Busulfan(DB01008)|Chlorambucil(DB00291)|Chloroquine(DB00608)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Ethacrynic acid(DB00903)|Glutathione(DB00143)|Mechlorethamine(DB00888)|Praziquantel(DB01058)|Vitamin E(DB00163)	GTGAATGTCAGCCCGGCTCAGC	0.520												
HCRTR2	3062	broad.mit.edu	37	6	55039411	55039412	+	Frame_Shift_Ins	INS	-	-	C	rs76774128		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:55039410_55039411T>TC	uc003pcl.3	+	0	340_341	c.25_26T>TC	c.(25-27)tccfs	p.S9fs	HCRTR2_uc010jzv.3_Non-coding_Transcript|HCRTR2_uc010jzu.1_Non-coding_Transcript	NM_001526	NP_001517	O43614	OX2R_HUMAN	Homo sapiens hypocretin (orexin) receptor 2 (HCRTR2), mRNA.	9					feeding behavior	integral to plasma membrane	neuropeptide receptor activity	p.P11fs*11(1)		breast(3)|endometrium(2)|kidney(1)|large_intestine(7)|lung(23)|ovary(2)|prostate(1)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(1)	46	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			ATTGGAGGACTCCCCCCCTTGT	0.564												
PHF3	23469	broad.mit.edu	37	6	64394219	64394219	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:64394218_64394218AG>A	uc003pep.1	+	2	620	c.595_595AG>A	c.(595-597)aggfs	p.R199fs	PHF3_uc010kaf.1_Frame_Shift_Del_p.R199fs|PHF3_uc003pem.2_Frame_Shift_Del_p.R152fs|PHF3_uc010kag.1_Frame_Shift_Del_p.R111fs|PHF3_uc010kah.1_Frame_Shift_Del_p.R13fs|PHF3_uc003pen.2_Frame_Shift_Del_p.R111fs|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.3_Frame_Shift_Del_p.R199fs	NM_015153	NP_055968	Q92576	PHF3_HUMAN	Homo sapiens PHD finger protein 3 (PHF3), mRNA.	199					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			breast(7)|cervix(2)|endometrium(8)|kidney(7)|large_intestine(18)|lung(21)|ovary(3)|prostate(1)|skin(2)|upper_aerodigestive_tract(6)	75	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			GGAGAATAGAAGGTGCAGCCG	0.403												
FILIP1	27145	broad.mit.edu	37	6	76023993	76023993	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:76023992_76023992AT>A	uc010kbe.3	-	5	2095	c.1565_1565AT>T	c.(1564-1566)atafs	p.I522fs	FILIP1_uc003phy.1_Frame_Shift_Del_p.I519fs|FILIP1_uc003phz.3_Frame_Shift_Del_p.I420fs|FILIP1_uc003pia.3_Frame_Shift_Del_p.I519fs|FILIP1_uc003pib.1_Frame_Shift_Del_p.I271fs	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	Homo sapiens filamin A interacting protein 1 (FILIP1), mRNA.	519								p.Q521H(1)		breast(3)|central_nervous_system(3)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(18)|liver(1)|lung(28)|ovary(1)|pancreas(1)|prostate(5)|skin(9)|upper_aerodigestive_tract(4)	80						TTCTTGTTTTATTTTTTCCAT	0.318												
SENP6	26054	broad.mit.edu	37	6	76369099	76369100	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:76369098_76369099C>CA	uc003pid.4	+	7	1290_1291	c.671_672C>CA	c.(670-672)tcafs	p.S224fs	SENP6_uc003pie.4_Frame_Shift_Ins_p.S217fs|SENP6_uc003pic.2_Frame_Shift_Ins_p.S217fs|SENP6_uc003pif.1_Frame_Shift_Ins_p.S115fs	NM_015571	NP_056386	Q9GZR1	SENP6_HUMAN	Homo sapiens SUMO1/sentrin specific peptidase 6 (SENP6), transcript variant 1, mRNA.	224					proteolysis	cytoplasm|nucleus	cysteine-type peptidase activity			breast(2)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(2)|lung(12)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	27		all_hematologic(105;0.189)				TCTCCTGCTTCAAAAAAATGTT	0.347												
RARS2	57038	broad.mit.edu	37	6	88229955	88229955	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:88229954_88229954CT>C	uc003pme.3	-	12	1116	c.1056_1056AG>G	c.(1054-1056)aagfs	p.K352fs	RARS2_uc003pmc.3_Frame_Shift_Del_p.K177fs|RARS2_uc003pmf.3_Non-coding_Transcript	NM_020320	NP_064716	Q5T160	SYRM_HUMAN	Homo sapiens arginyl-tRNA synthetase 2, mitochondrial (RARS2), nuclear gene encoding mitochondrial protein, mRNA.	352					arginyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|arginine-tRNA ligase activity|protein binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(6)|lung(7)|ovary(2)|prostate(1)|upper_aerodigestive_tract(1)	22		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0456)		GCTGAAAATGCTTTTTTTGTC	0.328												
POU3F2	5454	broad.mit.edu	37	6	99283815	99283815	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:99283814_99283814GA>G	uc003ppe.3	+	0	1235	c.1065_1065GA>G	c.(1063-1065)cggfs	p.R355fs		NM_005604	NP_005595	P20265	PO3F2_HUMAN	Homo sapiens POU class 3 homeobox 2 (POU3F2), mRNA.	355					positive regulation of cell proliferation		identical protein binding|sequence-specific DNA binding transcription factor activity	p.R355W(1)		endometrium(2)|large_intestine(3)|lung(5)	10		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0355)		GGCGCAAGCGGAAAAAGCGGA	0.617												
USP45	85015	broad.mit.edu	37	6	99936572	99936572	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:99936571_99936571TA>T	uc003ppx.2	-	5	1137	c.604_604TA>A	c.(604-606)aatfs	p.N202fs	USP45_uc003ppw.2_5'UTR|USP45_uc010kcq.2_Frame_Shift_Del_p.N202fs|USP45_uc003pqa.3_Frame_Shift_Del_p.N202fs	NM_001080481	NP_001073950	Q70EL2	UBP45_HUMAN	Homo sapiens ubiquitin specific peptidase 45 (USP45), mRNA.	202					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			NS(1)|breast(2)|central_nervous_system(1)|endometrium(5)|large_intestine(6)|lung(2)|ovary(1)|skin(1)|stomach(2)|upper_aerodigestive_tract(1)	22		all_cancers(76;0.000208)|Acute lymphoblastic leukemia(125;8.41e-11)|all_hematologic(75;2.56e-07)|all_epithelial(107;0.122)|Colorectal(196;0.133)		BRCA - Breast invasive adenocarcinoma(108;0.0718)		ATGACTGCATTAAAAAAGCAA	0.323												
PREP	5550	broad.mit.edu	37	6	105736713	105736713	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:105736712_105736712CT>C	uc003prc.3	-	10	1608	c.1375_1375AG>G	c.(1375-1377)ggcfs	p.G459fs		NM_002726	NP_002717	P48147	PPCE_HUMAN	Homo sapiens prolyl endopeptidase (PREP), mRNA.	459				G -> S (in Ref. 2; BAA04661).	proteolysis		serine-type endopeptidase activity			breast(1)|endometrium(2)|large_intestine(7)|lung(12)|ovary(3)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	29		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	AATTTTATGCCTTTTTTATGC	0.398												
KIAA1919	91749	broad.mit.edu	37	6	111587480	111587480	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:111587479_111587479CT>C	uc003puv.4	+	3	1136	c.714_714CT>C	c.(712-714)ttcfs	p.F238fs		NM_153369	NP_699200	Q5TF39	NAGT1_HUMAN	Homo sapiens KIAA1919 (KIAA1919), mRNA.	238					carbohydrate transport|sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			large_intestine(3)|lung(2)|ovary(4)|skin(3)	12		all_cancers(87;2.35e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.0209)		OV - Ovarian serous cystadenocarcinoma(136;0.055)|all cancers(137;0.0871)|Epithelial(106;0.0884)		TTCTGTTCTTCTTTTTTTATG	0.398												
MARCKS	4082	broad.mit.edu	37	6	114181730	114181731	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:114181729_114181730G>GC	uc003pvy.4	+	1	1368_1369	c.973_974G>GC	c.(973-975)gccfs	p.A325fs		NM_002356	NP_002347	P29966	MARCS_HUMAN	Homo sapiens myristoylated alanine-rich protein kinase C substrate (MARCKS), mRNA.	325					energy reserve metabolic process|regulation of insulin secretion	actin cytoskeleton|plasma membrane	actin filament binding|calmodulin binding			breast(1)|kidney(1)|large_intestine(1)|lung(1)	4		all_cancers(87;7.65e-05)|all_epithelial(87;0.000296)|all_hematologic(75;0.0172)|Colorectal(196;0.0317)|all_lung(197;0.198)		Epithelial(106;1.59e-07)|all cancers(137;9.85e-07)|OV - Ovarian serous cystadenocarcinoma(136;0.000322)		CAGTCCAGAAGCCCCCCCAGCG	0.644												
KIAA0408	9729	broad.mit.edu	37	6	127768353	127768353	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:127768352_127768352CT>C	uc011ebs.2	-	4	1448	c.1112_1112AG>G	c.(1111-1113)aggfs	p.R371fs	KIAA0408_uc003qbc.3_Frame_Shift_Del_p.R371fs|SOGA3_uc003qbd.3_3'UTR|KIAA0408_uc003qba.3_5'Flank|KIAA0408_uc003qbb.3_Frame_Shift_Del_p.R254fs	NM_014702	NP_055517	Q6ZU52	K0408_HUMAN	Homo sapiens KIAA0408 (KIAA0408), mRNA.	371							protein binding			endometrium(3)|large_intestine(7)|lung(15)|ovary(1)|pancreas(1)|skin(1)	28				GBM - Glioblastoma multiforme(226;0.0217)|all cancers(137;0.13)		AGAGGGGCTCCTTTTTGCACC	0.438												
PTPRK	5796	broad.mit.edu	37	6	128326374	128326374	+	Frame_Shift_Del	DEL	T	T	-	rs150668582		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:128326373_128326373GT>G	uc003qbk.3	-	14	2714	c.2347_2347AC>C	c.(2347-2349)cgcfs	p.R783fs	PTPRK_uc010kfc.3_Frame_Shift_Del_p.R784fs|PTPRK_uc003qbj.3_Frame_Shift_Del_p.R784fs|PTPRK_uc011ebu.2_Frame_Shift_Del_p.R784fs|PTPRK_uc003qbl.1_Frame_Shift_Del_p.R678fs|PTPRK_uc011ebv.1_Frame_Shift_Del_p.R794fs|PTPRK_uc010kfd.1_5'UTR	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	Homo sapiens protein tyrosine phosphatase, receptor type, K (PTPRK), transcript variant 2, mRNA.	783					cell migration|cellular response to UV|cellular response to reactive oxygen species|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity		PTPRK/RSPO3(10)	autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(14)|lung(24)|ovary(3)|pancreas(1)|skin(6)|upper_aerodigestive_tract(3)|urinary_tract(1)	72				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		GCATCTTTGCGTTTTTTAGCA	0.468												
AHI1	54806	broad.mit.edu	37	6	135784284	135784285	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:135784283_135784284G>GTT	uc003qgi.3	-	7	1294_1295	c.910_911C>AAC	c.(910-912)acafs	p.T304fs	AHI1_uc003qgh.3_Frame_Shift_Ins_p.T304fs|AHI1_uc003qgj.3_Frame_Shift_Ins_p.T304fs|AHI1_uc003qgk.4_Non-coding_Transcript|AHI1_uc003qgl.3_Frame_Shift_Ins_p.T304fs	NM_001134831	NP_060121	Q8N157	AHI1_HUMAN	Homo sapiens Abelson helper integration site 1 (AHI1), transcript variant 1, mRNA.	304						adherens junction|cilium|microtubule basal body				NS(1)|breast(1)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(6)|lung(18)|ovary(1)	37	Breast(56;0.239)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00904)|OV - Ovarian serous cystadenocarcinoma(155;0.00991)		CTTCTTTTTTGTTTTTTTTGGT	0.307												
MAP3K5	4217	broad.mit.edu	37	6	136943992	136943993	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:136943991_136943992G>GTC	uc003qhc.3	-	14	2505_2506	c.2144_2145C>GAC	c.(2143-2145)gacfs	p.D715fs	MAP3K5_uc011edj.2_Intron|MAP3K5_uc011edk.1_Frame_Shift_Ins_p.D560fs	NM_005923	NP_005914	Q99683	M3K5_HUMAN	Homo sapiens mitogen-activated protein kinase kinase kinase 5 (MAP3K5), mRNA.	715	Protein kinase.				activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|MAP kinase kinase kinase activity|caspase activator activity|magnesium ion binding|protein homodimerization activity|protein phosphatase binding			NS(1)|breast(1)|cervix(1)|endometrium(8)|kidney(6)|large_intestine(6)|lung(24)|ovary(2)|prostate(1)|skin(4)|urinary_tract(4)	58	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TGTACCTGCTGTCTCTCTCTGG	0.391												
PLEKHG1	57480	broad.mit.edu	37	6	151153218	151153218	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:151153217_151153217GA>G	uc011eem.1	+	14	3235	c.3147_3147GA>G	c.(3145-3147)gcgfs	p.A1049fs	PLEKHG1_uc011eel.1_Frame_Shift_Del_p.A1030fs|PLEKHG1_uc003qny.1_Frame_Shift_Del_p.A990fs|PLEKHG1_uc003qnz.2_Frame_Shift_Del_p.A990fs	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	Homo sapiens pleckstrin homology domain containing, family G (with RhoGef domain) member 1 (PLEKHG1), mRNA.	990					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			breast(3)|central_nervous_system(1)|endometrium(5)|kidney(2)|large_intestine(10)|lung(19)|ovary(5)|prostate(4)|stomach(1)|urinary_tract(3)	53			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		TTAAGAAGGCGAATCAACTTT	0.498												
AKAP12	9590	broad.mit.edu	37	6	151672365	151672366	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:151672364_151672365A>AC	uc011eep.2	+	3	3078_3079	c.2838_2839A>AC	c.(2836-2841)gaacccfs	p.E946fs	AKAP12_uc003qoe.3_Frame_Shift_Ins_p.E946fs|AKAP12_uc003qof.3_Frame_Shift_Ins_p.E848fs|AKAP12_uc010kim.3_Intron|AKAP12_uc003qog.3_Frame_Shift_Ins_p.E841fs	NM_005100	NP_005091	Q02952	AKA12_HUMAN	Homo sapiens A kinase (PRKA) anchor protein 12 (AKAP12), transcript variant 1, mRNA.	946				E -> G (in Ref. 4; CAH18338).	G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			breast(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(22)|lung(22)|ovary(2)|pancreas(1)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	68		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		CAGAAGAAGAACCCCCCACGGT	0.525												
C6orf70	55780	broad.mit.edu	37	6	170160062	170160063	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr6:170160061_170160062G>GT	uc003qxg.1	+	6	766_767	c.733_734G>GT	c.(733-735)gttfs	p.V245fs	C6orf70_uc011ehb.1_Frame_Shift_Ins_p.V119fs|C6orf70_uc003qxh.1_Frame_Shift_Ins_p.V245fs|C6orf70_uc010kky.1_Frame_Shift_Ins_p.V119fs	NM_018341	NP_060811	Q5T6L9	CF070_HUMAN	Homo sapiens chromosome 6 open reading frame 70 (C6orf70), mRNA.	245						integral to membrane				breast(1)|endometrium(1)|kidney(3)|large_intestine(7)|lung(7)|ovary(1)	20		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.2e-22)|BRCA - Breast invasive adenocarcinoma(81;1.49e-07)|GBM - Glioblastoma multiforme(31;0.00191)		GGATTTGATTGTTTTTCCTGGT	0.391												
ETV1	2115	broad.mit.edu	37	7	13975473	13975474	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:13975472_13975473T>TG	uc021zzz.1	-	5	501_502	c.414_415A>CA	c.(412-417)cccacafs	p.P138fs	ETV1_uc021zzt.1_Frame_Shift_Ins_p.P98fs|ETV1_uc021zzu.1_Intron|ETV1_uc021zzv.1_Frame_Shift_Ins_p.P80fs|ETV1_uc021zzw.1_Frame_Shift_Ins_p.P98fs|ETV1_uc021zzx.1_Intron|ETV1_uc021zzy.1_Frame_Shift_Ins_p.P80fs|ETV1_uc022aaa.1_Frame_Shift_Ins_p.P120fs|ETV1_uc022aab.1_Frame_Shift_Ins_p.P138fs|ETV1_uc003ssw.4_Frame_Shift_Ins_p.P138fs|ETV1_uc003ssx.3_Non-coding_Transcript|ETV1_uc022aac.1_Frame_Shift_Ins_p.P120fs|ETV1_uc022aad.1_Frame_Shift_Ins_p.P120fs|ETV1_uc010ktv.3_Frame_Shift_Ins_p.P7fs	NM_004956	NP_004947	P50549	ETV1_HUMAN	Homo sapiens ets variant 1 (ETV1), transcript variant 1, mRNA.	138					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(34)|ACSL3_ENST00000357430/ETV1(2)|EWSR1/ETV1(7)|KLK2/ETV1(3)|SLC45A3/ETV1(3)|HNRNPA2B1/ETV1(8)	breast(1)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(9)|lung(15)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)	31						CTGGATGGTGTGGGGGGGTTGG	0.530			T	"""EWSR1, TMPRSS2, SLC45A3, C15orf21, HNRNPA2B1. ACSL3"""	"""Ewing sarcoma, prostate"""							
TSPAN13	27075	broad.mit.edu	37	7	16815998	16815998	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:16815997_16815997AT>A	uc003stq.3	+	1	467	c.225_225AT>A	c.(223-225)ctafs	p.L75fs		NM_014399	NP_055214	O95857	TSN13_HUMAN	Homo sapiens tetraspanin 13 (TSPAN13), mRNA.	75						integral to plasma membrane|membrane fraction				autonomic_ganglia(1)|endometrium(1)|large_intestine(1)|ovary(1)|prostate(1)|skin(1)|stomach(1)	7	Lung NSC(10;0.0494)|all_lung(11;0.109)			UCEC - Uterine corpus endometrioid carcinoma (126;0.188)		AGGTGTTGCTATTTTTTGTAT	0.363												
HOXA1	3198	broad.mit.edu	37	7	27135357	27135357	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:27135356_27135356AC>A	uc003sye.3	-	0	270	c.176_176GT>T	c.(175-177)gtgfs	p.V59fs	HOXA1_uc003syd.3_Frame_Shift_Del_p.V59fs|HOXA1_uc022aao.1_Frame_Shift_Del_p.V59fs|HOTAIRM1_uc003syg.3_5'Flank|HOTAIRM1_uc022aap.1_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	Homo sapiens homeobox A1 (HOXA1), transcript variant 1, mRNA.	59						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			endometrium(2)|kidney(2)|large_intestine(4)|liver(1)|lung(14)|ovary(4)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	31						ACCGATCTGCACCCCCCTGCC	0.657											OREG0003750	type=REGULATORY REGION|Gene=BC031342|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay
ABCA13	154664	broad.mit.edu	37	7	48391813	48391814	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:48391812_48391813C>CT	uc003toq.2	+	30	10440_10441	c.10416_10417C>CT	c.(10414-10419)aacttcfs	p.N3472fs	ABCA13_uc010kys.1_Frame_Shift_Ins_p.N546fs|ABCA13_uc003tos.1_Frame_Shift_Ins_p.N298fs	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 13 (ABCA13), mRNA.	3472					transport	integral to membrane	ATP binding|ATPase activity			breast(13)|central_nervous_system(8)|endometrium(25)|haematopoietic_and_lymphoid_tissue(4)|kidney(20)|large_intestine(51)|lung(100)|ovary(5)|pancreas(2)|prostate(22)|skin(10)|stomach(3)|upper_aerodigestive_tract(3)|urinary_tract(4)	270						TCGACAAGAACTTCAGATCAGA	0.446												
DDC	1644	broad.mit.edu	37	7	50531075	50531075	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:50531074_50531074AT>A	uc003tpg.4	-	13	1499	c.1298_1298AT>T	c.(1297-1299)atcfs	p.I433fs	DDC_uc022ade.1_Frame_Shift_Del_p.I355fs|DDC_uc003tpf.4_Frame_Shift_Del_p.I433fs|DDC_uc022adb.1_Frame_Shift_Del_p.I395fs|DDC_uc022adc.1_Frame_Shift_Del_p.I385fs|DDC_uc022add.1_Frame_Shift_Del_p.I340fs	NM_001082971	NP_001076440	P20711	DDC_HUMAN	Homo sapiens dopa decarboxylase (aromatic L-amino acid decarboxylase) (DDC), transcript variant 1, mRNA.	433					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			breast(1)|endometrium(4)|kidney(3)|large_intestine(2)|lung(23)|ovary(4)|skin(2)|stomach(1)	40	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	AACCAAGTGGATTTTTTTGGC	0.507												
MAGI2	9863	broad.mit.edu	37	7	77764526	77764526	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:77764525_77764525TA>T	uc003ugx.3	-	17	3100	c.2846_splice	c.e17-1	p.T949_splice	MAGI2_uc003ugy.3_Splice_Site_p.T935_splice|MAGI2_uc010ldx.1_Splice_Site_p.T542_splice	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	Homo sapiens membrane associated guanylate kinase, WW and PDZ domain containing 2 (MAGI2), mRNA.	949	PDZ 5.					cell junction|synapse|synaptosome	phosphatase binding			NS(1)|breast(3)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(12)|lung(37)|ovary(5)|prostate(1)|skin(8)|upper_aerodigestive_tract(1)|urinary_tract(3)	84		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GGGGCACAGCTAAAAAAACCC	0.458												
ABCB4	5244	broad.mit.edu	37	7	87092227	87092227	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:87092226_87092226TA>T	uc003uiv.1	-	4	212	c.136_splice	c.e4-1	p.F46_splice	ABCB4_uc003uiw.1_Splice_Site_p.F46_splice|ABCB4_uc003uix.1_Splice_Site_p.F46_splice|ABCB4_uc003uiy.3_Splice_Site_p.F46_splice	NM_018849	NP_061337	P21439	MDR3_HUMAN	Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 4 (ABCB4), transcript variant B, mRNA.	46					cellular lipid metabolic process	Golgi membrane|apical plasma membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			breast(5)|endometrium(7)|kidney(2)|large_intestine(15)|lung(32)|ovary(4)|pancreas(2)|prostate(4)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	77	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					GTATCGAAACTAAAAAAAGGA	0.343												
AKAP9	10142	broad.mit.edu	37	7	91709345	91709345	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:91709344_91709344GA>G	uc003ulg.3	+	30	8122	c.7897_7897GA>G	c.(7897-7899)gaafs	p.E2633fs	AKAP9_uc003ulf.3_Frame_Shift_Del_p.E2625fs|AKAP9_uc003uli.3_Frame_Shift_Del_p.E2256fs|AKAP9_uc003ulj.3_Frame_Shift_Del_p.E403fs	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	Homo sapiens A kinase (PRKA) anchor protein (yotiao) 9 (AKAP9), transcript variant 2, mRNA.	2645	Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	Golgi apparatus|centrosome|cytosol	receptor binding	p.T2632S(1)		NS(1)|autonomic_ganglia(2)|breast(14)|central_nervous_system(3)|cervix(1)|endometrium(13)|kidney(12)|large_intestine(35)|lung(49)|ovary(8)|prostate(6)|skin(8)|stomach(1)|urinary_tract(2)	155	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AGAAATTGCAGAAAAAAATGT	0.323			T	BRAF	papillary thyroid							
DLX6	1750	broad.mit.edu	37	7	96639185	96639185	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:96639184_96639184AC>A	uc022ahu.1	+	2	707	c.707_707AC>A	c.(706-708)gacfs	p.D236fs	DLX6-AS1_uc003uol.3_Intron|DLX6-AS1_uc010lfo.1_Intron	NM_005222	NP_005213	P56179	DLX6_HUMAN	Homo sapiens distal-less homeobox 6 (DLX6), mRNA.	118					nervous system development|skeletal system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|kidney(1)|large_intestine(1)|liver(2)|lung(4)|ovary(2)|urinary_tract(1)	12	all_cancers(62;9.56e-09)|all_epithelial(64;7.38e-09)|Esophageal squamous(72;0.0125)|all_lung(186;0.0855)|Lung NSC(181;0.0858)					CATGAGAGCGACCCCCTCCAG	0.562												
ZKSCAN5	23660	broad.mit.edu	37	7	99129418	99129419	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:99129417_99129418G>GA	uc003uqv.3	+	6	2189_2190	c.2065_2066G>GA	c.(2065-2067)gaafs	p.E689fs	ZKSCAN5_uc010lfx.3_Frame_Shift_Ins_p.E689fs|ZKSCAN5_uc003uqw.3_Frame_Shift_Ins_p.E689fs|ZKSCAN5_uc003uqx.3_Frame_Shift_Ins_p.E616fs|ZKSCAN5_uc003uqy.3_Frame_Shift_Ins_p.E425fs	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	Homo sapiens zinc finger with KRAB and SCAN domains 5 (ZKSCAN5), transcript variant 2, mRNA.	689					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(3)|endometrium(1)|kidney(1)|large_intestine(6)|lung(6)|ovary(1)|prostate(1)|skin(1)|urinary_tract(1)	21	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					TCAGAAAAATGAAAAAAATGGC	0.411												
ACTL6B	51412	broad.mit.edu	37	7	100245131	100245131	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:100245130_100245130TG>T	uc003uvy.3	-	7	803	c.696_696CA>A	c.(694-696)ccafs	p.P232fs	ACTL6B_uc003uvz.3_Non-coding_Transcript	NM_016188	NP_057272	O94805	ACL6B_HUMAN	Homo sapiens actin-like 6B (ACTL6B), mRNA.	232					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	SWI/SNF complex|nBAF complex	ATP binding|protein binding|structural constituent of cytoskeleton			endometrium(1)|large_intestine(3)|lung(7)|ovary(1)|skin(1)	13	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					TCTTCCAGTTTGGGGGGGCAC	0.607												
PUS7	54517	broad.mit.edu	37	7	105148917	105148918	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:105148916_105148917G>GC	uc010lji.3	-	0	51_52	c.43_44C>GC	c.(43-45)gcafs	p.A15fs	PUS7_uc003vcx.3_Frame_Shift_Ins_p.A15fs|PUS7_uc003vcy.3_Frame_Shift_Ins_p.A15fs|PUS7_uc003vcz.1_Frame_Shift_Ins_p.A15fs	NM_019042	NP_061915	Q96PZ0	PUS7_HUMAN	Homo sapiens pseudouridylate synthase 7 homolog (S. cerevisiae) (PUS7), mRNA.	15					pseudouridine synthesis|tRNA processing		RNA binding|pseudouridine synthase activity			breast(1)|endometrium(2)|kidney(1)|large_intestine(9)|lung(8)|pancreas(1)|skin(1)	23						GACAACCAGTGCCCCACGTTTC	0.431												
PIK3CG	5294	broad.mit.edu	37	7	106519994	106519994	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:106519993_106519993GA>G	uc003vdv.4	+	5	2506	c.2421_2421GA>G	c.(2419-2421)aagfs	p.K807fs	PIK3CG_uc003vdu.3_Frame_Shift_Del_p.K807fs|PIK3CG_uc003vdw.3_Frame_Shift_Del_p.K807fs	NM_002649	NP_002640	P48736	PK3CG_HUMAN	Homo sapiens phosphoinositide-3-kinase, catalytic, gamma polypeptide (PIK3CG), mRNA.	807					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding	p.S806F(1)		breast(7)|central_nervous_system(9)|cervix(1)|endometrium(6)|kidney(4)|large_intestine(16)|liver(4)|lung(59)|ovary(4)|pancreas(4)|prostate(3)|skin(6)|stomach(3)|upper_aerodigestive_tract(5)|urinary_tract(1)	132						TGGCCTCCAAGAAAAAACCAC	0.378												
LRRN3	54674	broad.mit.edu	37	7	110764637	110764638	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:110764636_110764637G>GA	uc003vft.4	+	3	2854_2855	c.1808_1809G>GA	c.(1807-1809)agafs	p.R603fs	IMMP2L_uc003vfq.2_Intron|IMMP2L_uc010ljr.2_Intron|IMMP2L_uc003vfr.3_Intron|LRRN3_uc003vfu.4_Frame_Shift_Ins_p.R603fs|LRRN3_uc003vfs.4_Frame_Shift_Ins_p.R603fs|LRRN3_uc022akc.1_Frame_Shift_Ins_p.R603fs	NM_001099660	NP_060804	Q9H3W5	LRRN3_HUMAN	Homo sapiens leucine rich repeat neuronal 3 (LRRN3), transcript variant 1, mRNA.	603	Fibronectin type-III.					integral to membrane				NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(15)|lung(20)|ovary(2)|pancreas(2)|prostate(1)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(1)	55				UCEC - Uterine corpus endometrioid carcinoma (4;0.245)|LUSC - Lung squamous cell carcinoma(290;0.0715)|Lung(3;0.0864)|STAD - Stomach adenocarcinoma(3;0.125)		CAGAAAAACAGAAAAAAATGTG	0.356												
ST7	7982	broad.mit.edu	37	7	116771955	116771956	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:116771954_116771955GGA>G	uc003vin.3	+	5	795_796	c.581_582GGA>G	c.(580-582)tggfs	p.W194fs	ST7_uc011knl.2_Frame_Shift_Del_p.W194fs|ST7_uc003vio.3_Frame_Shift_Del_p.W194fs|ST7_uc003viq.3_Frame_Shift_Del_p.W148fs|ST7_uc011knm.2_Frame_Shift_Del_p.W151fs|ST7_uc003vir.3_Frame_Shift_Del_p.W142fs|ST7-AS2_uc003viu.3_Intron|ST7-AS2_uc003viw.3_Intron|ST7_uc003vix.1_Frame_Shift_Del_p.W30fs	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	Homo sapiens suppression of tumorigenicity 7 (ST7), transcript variant b, mRNA.	194						integral to membrane	binding			NS(1)|breast(4)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(4)|liver(2)|lung(5)|ovary(1)|skin(1)	21	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CAGAAAGCCTGGAGAGAGAGAA	0.386												
WNT16	51384	broad.mit.edu	37	7	120971879	120971879	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:120971878_120971878TG>T	uc003vjw.3	+	2	750	c.493_493TG>T	c.(493-495)tggfs	p.W165fs	WNT16_uc003vjv.3_Frame_Shift_Del_p.W155fs|WNT16_uc010lkl.3_Intron	NM_057168	NP_476509	Q9UBV4	WNT16_HUMAN	Homo sapiens wingless-type MMTV integration site family, member 16 (WNT16), transcript variant 1, mRNA.	165					Wnt receptor signaling pathway, calcium modulating pathway|anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|keratinocyte differentiation|keratinocyte proliferation|negative regulation of cell death|optic cup formation involved in camera-type eye development|oxidative stress-induced premature senescence|positive regulation of JNK cascade|positive regulation of gene expression|positive regulation of phosphatidylinositol 3-kinase cascade|replicative senescence	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity	p.C168fs*4(2)|p.H164P(1)		breast(1)|large_intestine(4)|lung(9)|ovary(3)|prostate(1)	18	all_neural(327;0.117)					AGGCTGGCACTGGGGGGGCTG	0.537												
GRM8	2918	broad.mit.edu	37	7	126173278	126173278	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:126173277_126173277TG>T	uc003vlr.2	-	7	2470	c.2159_2159CA>A	c.(2158-2160)cacfs	p.H720fs	GRM8_uc003vls.2_Non-coding_Transcript|GRM8_uc011kof.1_Non-coding_Transcript|GRM8_uc003vlt.2_Frame_Shift_Del_p.H720fs|GRM8_uc010lkz.1_Non-coding_Transcript	NM_000845	NP_000836	O00222	GRM8_HUMAN	Homo sapiens glutamate receptor, metabotropic 8 (GRM8), transcript variant 1, mRNA.	720					negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				breast(3)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(4)|large_intestine(16)|lung(62)|ovary(5)|pancreas(1)|prostate(1)|skin(14)|stomach(1)|upper_aerodigestive_tract(6)|urinary_tract(4)	125		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	AATGATGATGTGGGGGGGATC	0.502										HNSCC(24;0.065)		
SND1	27044	broad.mit.edu	37	7	127724828	127724828	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:127724827_127724827AC>A	uc003vmi.3	+	18	2388	c.2162_2162AC>A	c.(2161-2163)cacfs	p.H721fs	SND1_uc010lle.3_Frame_Shift_Del_p.H374fs	NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	Homo sapiens staphylococcal nuclease and tudor domain containing 1 (SND1), mRNA.	721					gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	RNA-induced silencing complex|melanosome|nucleus	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			central_nervous_system(1)|endometrium(8)|kidney(1)|large_intestine(9)|lung(15)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(3)	41						ATTGCCAGTCACCCCCCTGTA	0.562												
CCDC136	64753	broad.mit.edu	37	7	128451944	128451944	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:128451943_128451943AG>A	uc003vnv.2	+	12	2534	c.2118_2118AG>A	c.(2116-2118)caafs	p.Q706fs	CCDC136_uc003vnu.2_Intron|CCDC136_uc003vnx.2_Frame_Shift_Del_p.Q522fs|CCDC136_uc010llq.2_Frame_Shift_Del_p.Q75fs|CCDC136_uc003vny.2_Frame_Shift_Del_p.Q316fs	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	Homo sapiens coiled-coil domain containing 136 (CCDC136), transcript variant 1, mRNA.	706						integral to membrane	protein binding			breast(2)|endometrium(3)|kidney(1)|large_intestine(4)|lung(11)|ovary(3)	24						AGCAAGAGCAAGGGAGGCTCC	0.572												
NUP205	23165	broad.mit.edu	37	7	135258404	135258404	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:135258403_135258403CA>C	uc003vsw.3	+	3	203	c.172_splice	c.e3-1	p.P58_splice	NUP205_uc011kqa.1_Splice_Site	NM_015135	NP_055950	Q92621	NU205_HUMAN	Homo sapiens nucleoporin 205kDa (NUP205), mRNA.	58					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			breast(4)|central_nervous_system(2)|endometrium(9)|kidney(7)|large_intestine(17)|liver(4)|lung(36)|ovary(5)|prostate(1)|skin(2)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(3)	93						TCATTGTAGCCAAAAAATGTT	0.413												
KIAA1549	57670	broad.mit.edu	37	7	138603524	138603524	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:138603523_138603523TA>T	uc011kql.2	-	1	898	c.849_849TA>A	c.(847-849)ttafs	p.L283fs	KIAA1549_uc011kqj.2_Frame_Shift_Del_p.L283fs	NM_001164665	NP_001158137	Q9HCM3	K1549_HUMAN	Homo sapiens KIAA1549 (KIAA1549), transcript variant 2, mRNA.	283						integral to membrane			KIAA1549/BRAF(703)	large_intestine(4)|pancreas(1)|upper_aerodigestive_tract(2)	7						ACCGGGAGCTTAAAAAAAGGG	0.517			O	BRAF	pilocytic astrocytoma							
AGK	55750	broad.mit.edu	37	7	141301025	141301025	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr7:141301024_141301024GA>G	uc003vwi.2	+	4	412	c.241_241GA>G	c.(241-243)gaafs	p.E81fs	AGK_uc011krg.1_Non-coding_Transcript	NM_018238	NP_060708	Q53H12	AGK_HUMAN	Homo sapiens acylglycerol kinase (AGK), nuclear gene encoding mitochondrial protein, mRNA.	81	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	mitochondrial membrane	ATP binding|NAD+ kinase activity|acylglycerol kinase activity|diacylglycerol kinase activity			breast(1)|endometrium(1)|large_intestine(4)|lung(6)|ovary(1)|pancreas(1)|prostate(3)	17	Melanoma(164;0.0171)					GACTCTATTTGAAAAAAATGC	0.363												
DLGAP2	9228	broad.mit.edu	37	8	1497600	1497600	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:1497599_1497599AC>A	uc003wpl.3	+	1	837	c.740_740AC>A	c.(739-741)tacfs	p.Y247fs	DLGAP2_uc003wpm.3_Frame_Shift_Del_p.Y247fs	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	Homo sapiens discs, large (Drosophila) homolog-associated protein 2 (DLGAP2), mRNA.	326					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding			breast(1)|endometrium(6)|lung(31)|prostate(3)	41		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GCCCACTGCTACCCCGACGCG	0.667												
SOX7	83595	broad.mit.edu	37	8	10583646	10583646	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:10583645_10583645AG>A	uc011kwz.2	-	5	959	c.926_926CT>T	c.(925-927)ctgfs	p.L309fs	SOX7_uc003wtf.3_Frame_Shift_Del_p.L257fs	NM_031439	NP_113627	Q9BT81	SOX7_HUMAN	Homo sapiens SRY (sex determining region Y)-box 7 (SOX7), mRNA.	257	Sox C-terminal.				endoderm formation|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of caspase activity|regulation of canonical Wnt receptor signaling pathway	cytoplasm|nucleus	transcription regulatory region DNA binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(5)|lung(6)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	20				COAD - Colon adenocarcinoma(149;0.0732)		CAGGGAGCCCAGGGGGTGGCT	0.687												
MTMR9	66036	broad.mit.edu	37	8	11162509	11162510	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:11162508_11162509C>CA	uc003wtm.3	+	3	974_975	c.576_577C>CA	c.(574-579)cacaaafs	p.H192fs	MTMR9_uc010lrx.3_Frame_Shift_Ins_p.H85fs|MTMR9_uc011kxa.2_Frame_Shift_Ins_p.H107fs	NM_015458	NP_056273	Q96QG7	MTMR9_HUMAN	Homo sapiens myotubularin related protein 9 (MTMR9), mRNA.	192	Myotubularin phosphatase.					cytoplasm	phosphatase activity|protein binding			cervix(1)|endometrium(3)|kidney(2)|large_intestine(2)|lung(4)|ovary(1)|skin(1)|urinary_tract(2)	16			STAD - Stomach adenocarcinoma(15;0.215)	COAD - Colon adenocarcinoma(149;0.0678)		GCTATTACCACAAAAAAAATGG	0.455												
ZDHHC2	51201	broad.mit.edu	37	8	17067924	17067925	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:17067923_17067924C>CT	uc003wxe.3	+	9	1281_1282	c.884_885C>CT	c.(883-885)actfs	p.T295fs		NM_016353	NP_057437	Q9UIJ5	ZDHC2_HUMAN	Homo sapiens zinc finger, DHHC-type containing 2 (ZDHHC2), mRNA.	295						integral to membrane	acyltransferase activity|zinc ion binding			endometrium(1)|kidney(1)|large_intestine(3)|lung(1)|pancreas(1)|stomach(1)	8				Colorectal(111;0.0697)|COAD - Colon adenocarcinoma(73;0.244)		TCCTTTCCAACTTGCCTTGTTA	0.371												
MTUS1	57509	broad.mit.edu	37	8	17611702	17611703	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:17611701_17611702G>GCA	uc003wxv.3	-	1	2089_2090	c.1615_1616C>TGC	c.(1615-1617)gccfs	p.A539fs	MTUS1_uc010lsy.3_Non-coding_Transcript|MTUS1_uc003wxw.3_Frame_Shift_Ins_p.A539fs|MTUS1_uc010lsz.3_Frame_Shift_Ins_p.A539fs	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	Homo sapiens microtubule associated tumor suppressor 1 (MTUS1), transcript variant 1, mRNA.	539						Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				breast(1)|central_nervous_system(1)|endometrium(4)|kidney(4)|large_intestine(14)|lung(8)|ovary(1)|skin(2)|urinary_tract(1)	36				Colorectal(111;0.0778)		GGGTGATGAGGCACTGGTCTGC	0.426												
PIWIL2	55124	broad.mit.edu	37	8	22175773	22175773	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:22175772_22175772TA>T	uc003xbn.2	+	19	2535	c.2387_2387TA>T	c.(2386-2388)ttafs	p.L796fs	PIWIL2_uc011kzf.1_Frame_Shift_Del_p.L796fs|PIWIL2_uc010ltv.2_Frame_Shift_Del_p.L796fs	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	Homo sapiens piwi-like 2 (Drosophila) (PIWIL2), transcript variant 2, mRNA.	796	Piwi.				DNA methylation involved in gamete generation|RNA 5'-end processing|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|spermatogenesis	chromatoid body|pi-body	piRNA binding			NS(1)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(14)|lung(14)|prostate(4)|skin(5)|stomach(1)|upper_aerodigestive_tract(1)	46				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		GTGGGCTCCTTAAAAAAGTTT	0.458												
ADAMDEC1	27299	broad.mit.edu	37	8	24249828	24249828	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:24249827_24249827TA>T	uc003xdz.2	+	1	361	c.141_141TA>T	c.(139-141)cctfs	p.P47fs	ADAMDEC1_uc010lub.2_5'UTR|ADAMDEC1_uc011lab.1_Intron	NM_014479	NP_001138744	O15204	ADEC1_HUMAN	Homo sapiens ADAM-like, decysin 1 (ADAMDEC1), transcript variant 1, mRNA.	47					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			NS(1)|breast(1)|large_intestine(4)|skin(2)|stomach(1)	9		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		TAGTTTGTCCTAAAAAACTTC	0.348												
PLAG1	5324	broad.mit.edu	37	8	57079754	57079754	+	Frame_Shift_Del	DEL	T	T	-	rs141930943		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:57079753_57079753CT>C	uc003xsq.4	-	2	1003	c.552_552AG>G	c.(550-552)aagfs	p.K184fs	PLAG1_uc003xsr.4_Frame_Shift_Del_p.K184fs|PLAG1_uc010lyi.3_Frame_Shift_Del_p.K184fs|PLAG1_uc010lyj.3_Frame_Shift_Del_p.K102fs|PLAG1_uc022aur.1_Frame_Shift_Del_p.K102fs	NM_001114635	NP_001108107	Q6DJT9	PLAG1_HUMAN	Homo sapiens pleiomorphic adenoma gene 1 (PLAG1), transcript variant 3, mRNA.	184	Decreased nuclear import with localization in the nucleus but also in the cytoplasm.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding		CTNNB1/PLAG1(60)|LIFR_ENST00000263409/PLAG1(10)|HAS2/PLAG1(10)|FGFR1_ENST00000447712/PLAG1(28)|COL1A2/PLAG1(3)|CHCHD7/PLAG1(12)|TCEA1_ENST00000521604/PLAG1(3)	breast(3)|central_nervous_system(1)|cervix(1)|kidney(2)|large_intestine(7)|lung(11)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	28		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.125)	Epithelial(17;0.00179)|all cancers(17;0.0125)			CGCACTGGTGCTTTTTTTCTT	0.483			T	"""TCEA1, LIFR, CTNNB1, CHCHD7"""	salivary adenoma							
PENK	5179	broad.mit.edu	37	8	57354072	57354072	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:57354071_57354071GC>G	uc003xsz.2	-	1	645	c.564_564GC>C	c.(562-564)ggcfs	p.G188fs	PENK_uc003xta.3_Frame_Shift_Del_p.G188fs	NM_006211	NP_006202	P01210	PENK_HUMAN	Homo sapiens proenkephalin (PENK), transcript variant 2, mRNA.	188					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			central_nervous_system(3)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|liver(1)|lung(5)|ovary(2)|skin(3)|upper_aerodigestive_tract(2)	21		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CTCTCATGAAGCCCCCATATC	0.517												
ZFHX4	79776	broad.mit.edu	37	8	77763477	77763477	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:77763476_77763476TA>T	uc003yau.2	+	9	4706	c.4319_4319TA>T	c.(4318-4320)ttafs	p.L1440fs	ZFHX4_uc003yaw.1_Frame_Shift_Del_p.L1395fs	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	Homo sapiens zinc finger homeobox 4 (ZFHX4), mRNA.	1395						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(3)|breast(11)|central_nervous_system(1)|endometrium(36)|haematopoietic_and_lymphoid_tissue(2)|kidney(15)|large_intestine(66)|liver(2)|lung(245)|ovary(11)|pancreas(3)|prostate(11)|skin(7)|upper_aerodigestive_tract(13)|urinary_tract(6)	432			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TTCCAGGCTTTAAAAAAACAC	0.483										HNSCC(33;0.089)		
POP1	10940	broad.mit.edu	37	8	99168468	99168468	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:99168467_99168467TA>T	uc003yij.4	+	14	2347	c.2247_2247TA>T	c.(2245-2247)cctfs	p.P749fs	POP1_uc011lgv.2_Frame_Shift_Del_p.P749fs|POP1_uc003yik.3_Frame_Shift_Del_p.P749fs	NM_001145860	NP_055844	Q99575	POP1_HUMAN	Homo sapiens processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) (POP1), transcript variant 1, mRNA.	749					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			autonomic_ganglia(1)|breast(3)|endometrium(4)|large_intestine(9)|lung(15)|ovary(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	36	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			CTCCCATGCCTAAAAAAACTC	0.507												
FBXO43	286151	broad.mit.edu	37	8	101154105	101154105	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:101154104_101154104CT>C	uc003yjd.3	-	1	1114	c.378_378AG>G	c.(376-378)aagfs	p.K126fs	FBXO43_uc003yje.3_Frame_Shift_Del_p.K92fs|FBXO43_uc010mbp.2_Frame_Shift_Del_p.K126fs	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	Homo sapiens F-box protein 43 (FBXO43), transcript variant 2, mRNA.	126					meiosis		zinc ion binding			endometrium(1)|kidney(4)|large_intestine(5)|lung(14)|prostate(1)|skin(5)|urinary_tract(1)	31	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			AGATACATTTCTTTTTTTGAG	0.393												
RIMS2	9699	broad.mit.edu	37	8	104898242	104898242	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:104898241_104898241GA>G	uc003yls.3	+	1	989	c.748_748GA>G	c.(748-750)gaafs	p.E250fs	RIMS2_uc003ylp.3_Frame_Shift_Del_p.E472fs|RIMS2_uc003ylw.2_Frame_Shift_Del_p.E280fs|RIMS2_uc003ylq.3_Frame_Shift_Del_p.E280fs|RIMS2_uc003ylr.3_Frame_Shift_Del_p.E280fs	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	Homo sapiens regulating synaptic membrane exocytosis 2 (RIMS2), transcript variant 2, mRNA.	503					intracellular protein transport	cell junction|presynaptic membrane	Rab GTPase binding|metal ion binding	p.L249P(1)		NS(1)|breast(4)|central_nervous_system(5)|endometrium(8)|haematopoietic_and_lymphoid_tissue(4)|kidney(2)|large_intestine(22)|liver(1)|lung(68)|ovary(6)|pancreas(2)|prostate(3)|skin(6)|stomach(1)|upper_aerodigestive_tract(10)|urinary_tract(1)	144			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AACAAAACGGGAAAAAATGGA	0.448										HNSCC(12;0.0054)		
PKHD1L1	93035	broad.mit.edu	37	8	110432893	110432893	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:110432892_110432892AC>A	uc003yne.3	+	22	2774	c.2670_2670AC>A	c.(2668-2670)atafs	p.I890fs		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	Homo sapiens polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 (PKHD1L1), mRNA.	890					immune response	cytosol|extracellular space|integral to membrane	receptor activity			NS(4)|breast(13)|central_nervous_system(6)|cervix(1)|endometrium(19)|kidney(17)|large_intestine(34)|lung(122)|ovary(11)|pancreas(3)|prostate(9)|skin(3)|stomach(4)|upper_aerodigestive_tract(13)|urinary_tract(4)	263			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTTACAATATACCCATGATGG	0.328										HNSCC(38;0.096)		
TRPS1	7227	broad.mit.edu	37	8	116599584	116599585	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:116599583_116599584TTC>T	uc003yny.3	-	4	2922_2923	c.2344_2345GAA>A	c.(2344-2346)aagfs	p.K782fs	TRPS1_uc011lhy.2_Frame_Shift_Del_p.K773fs|TRPS1_uc003ynz.3_Frame_Shift_Del_p.K769fs|TRPS1_uc010mcy.3_Frame_Shift_Del_p.K769fs	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	Homo sapiens trichorhinophalangeal syndrome I (TRPS1), mRNA.	769	Mediates interaction with GLI3.				NLS-bearing substrate import into nucleus|negative regulation of transcription from RNA polymerase II promoter|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			autonomic_ganglia(1)|breast(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(25)|lung(58)|ovary(3)|pancreas(1)|prostate(1)|skin(6)|urinary_tract(2)	111	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			CTCTTCCAGCTTCTCTCTCTTC	0.505									Langer-Giedion syndrome			
TRPS1	7227	broad.mit.edu	37	8	116631857	116631858	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:116631856_116631857A>AG	uc003yny.3	-	2	1046_1047	c.468_469T>CT	c.(466-471)ccctcafs	p.P156fs	TRPS1_uc011lhy.2_Frame_Shift_Ins_p.P147fs|TRPS1_uc003ynz.3_Frame_Shift_Ins_p.P143fs|TRPS1_uc010mcy.3_Frame_Shift_Ins_p.P143fs	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	Homo sapiens trichorhinophalangeal syndrome I (TRPS1), mRNA.	143					NLS-bearing substrate import into nucleus|negative regulation of transcription from RNA polymerase II promoter|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			autonomic_ganglia(1)|breast(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(25)|lung(58)|ovary(3)|pancreas(1)|prostate(1)|skin(6)|urinary_tract(2)	111	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			GAGTCCCCTGAGGGGGTGCAGG	0.530									Langer-Giedion syndrome			
ZHX2	22882	broad.mit.edu	37	8	123965055	123965055	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:123965054_123965054AC>A	uc022bag.1	+	0	1304	c.1304_1304AC>A	c.(1303-1305)aacfs	p.N435fs	ZHX2_uc003ypk.1_Frame_Shift_Del_p.N435fs	NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	Homo sapiens zinc fingers and homeoboxes 2 (ZHX2), mRNA.	435	Required for interaction with NFYA.|Required for nuclear localization.|Required for repressor activity.					cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(7)|kidney(1)|large_intestine(10)|lung(15)|ovary(1)|prostate(1)|skin(4)|stomach(3)|urinary_tract(1)	45	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			AAGGTGGCCAACCCCCCGCTC	0.612												
ASAP1	50807	broad.mit.edu	37	8	131073125	131073126	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:131073124_131073125T>TG	uc003yta.2	-	27	3120_3121	c.2892_2893A>CA	c.(2890-2895)cccaaafs	p.P964fs	ASAP1_uc003ysz.2_Frame_Shift_Ins_p.P775fs|ASAP1_uc011liw.2_Frame_Shift_Ins_p.P957fs	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	Homo sapiens ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 (ASAP1), transcript variant 1, mRNA.	964	Pro-rich.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|SH3 domain binding|cytoskeletal adaptor activity|zinc ion binding			breast(5)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(13)|lung(22)|ovary(6)|pancreas(1)|prostate(1)|skin(3)|stomach(1)	68						AGCTGTGGTTTGGGGGGCAGTT	0.599												
EIF2C2	27161	broad.mit.edu	37	8	141559309	141559309	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:141559308_141559308GC>G	uc003yvn.3	-	11	1534	c.1493_1493GC>C	c.(1492-1494)gcgfs	p.A498fs	EIF2C2_uc010meo.3_Frame_Shift_Del_p.A498fs|EIF2C2_uc010men.3_Frame_Shift_Del_p.A421fs	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	Homo sapiens eukaryotic translation initiation factor 2C, 2 (EIF2C2), transcript variant 1, mRNA.	498					mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	RNA-induced silencing complex|cytoplasmic mRNA processing body|cytosol|mRNA cap binding complex|micro-ribonucleoprotein complex|nucleus|polysome	RNA 7-methylguanosine cap binding|endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|siRNA binding|translation initiation factor activity			NS(1)|endometrium(5)|kidney(7)|large_intestine(4)|lung(13)|prostate(1)|skin(1)|urinary_tract(1)	33	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			CACGCTGTCCGCCCCCTGCGC	0.632												
OPLAH	26873	broad.mit.edu	37	8	145112931	145112931	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145112930_145112930AC>A	uc003zar.3	-	7	1153	c.1071_1071GT>T	c.(1069-1071)ggtfs	p.G357fs	OPLAH_uc003zas.1_5'Flank|OPLAH_uc003zat.1_Frame_Shift_Del_p.G135fs	NM_017570	NP_060040	O14841	OPLA_HUMAN	Homo sapiens 5-oxoprolinase (ATP-hydrolysing) (OPLAH), mRNA.	357							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding			breast(1)|central_nervous_system(1)|endometrium(1)|lung(13)|ovary(1)|skin(1)|upper_aerodigestive_tract(2)	20	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	AGAGGCGGGAACCCCCTCCCG	0.657												
FBXL6	26233	broad.mit.edu	37	8	145580194	145580194	+	Splice_Site	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145580193_145580193TG>T	uc003zcb.3	-	7	1070	c.994_splice	c.e7-1	p.V332_splice	C8ORFK29_uc011llb.2_5'Flank|C8ORFK29_uc010mfw.3_5'Flank|C8ORFK29_uc003zby.4_5'Flank|FBXL6_uc003zbz.3_Splice_Site_p.V59_splice|FBXL6_uc003zca.3_Splice_Site_p.V326_splice|FBXL6_uc010mfx.3_Splice_Site_p.V93_splice|SLC52A2_uc003zcc.2_5'Flank|SLC52A2_uc003zce.2_5'Flank|SLC52A2_uc010mfy.2_5'Flank|SLC52A2_uc011llc.2_5'Flank|SLC52A2_uc003zcd.2_5'Flank	NM_012162	NP_036294	Q8N531	FBXL6_HUMAN	Homo sapiens F-box and leucine-rich repeat protein 6 (FBXL6), transcript variant 1, mRNA.	332					proteolysis		ubiquitin-protein ligase activity			endometrium(1)|lung(3)|ovary(1)	5	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			CCGCAGCACCTGGGGGCAAGG	0.672												
SLC39A4	55630	broad.mit.edu	37	8	145640283	145640283	+	Splice_Site	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr8:145640282_145640282TG>T	uc003zcq.3	-	5	905	c.805_splice	c.e5-1	p.V269_splice	SLC39A4_uc003zcm.1_5'Flank|SLC39A4_uc003zcn.3_5'Flank|SLC39A4_uc003zco.3_5'UTR|SLC39A4_uc003zcp.3_Splice_Site_p.V244_splice	NM_130849	NP_570901	Q6P5W5	S39A4_HUMAN	Homo sapiens solute carrier family 39 (zinc transporter), member 4 (SLC39A4), transcript variant 2, mRNA.	269						cytoplasmic membrane-bounded vesicle|integral to membrane|recycling endosome membrane	zinc ion transmembrane transporter activity			endometrium(1)|kidney(1)|large_intestine(1)|lung(5)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)	14	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;1.12e-40)|all cancers(56;8.17e-36)|BRCA - Breast invasive adenocarcinoma(115;0.0407)|Colorectal(110;0.055)			CAGGCATACCTGGGGGGTGGC	0.672												
DOCK8	81704	broad.mit.edu	37	9	332402	332402	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:332401_332401GA>G	uc003zgf.2	+	9	1160	c.1048_1048GA>G	c.(1048-1050)gaafs	p.E350fs	DOCK8_uc011lls.1_Frame_Shift_Del_p.E350fs|DOCK8_uc022bcu.1_Frame_Shift_Del_p.E282fs|DOCK8_uc010mgv.3_Frame_Shift_Del_p.E282fs|DOCK8_uc010mgu.3_5'UTR|DOCK8_uc003zgg.3_Frame_Shift_Del_p.E282fs|DOCK8_uc022bct.1_Non-coding_Transcript	NM_203447	NP_001180465	Q8NF50	DOCK8_HUMAN	Homo sapiens dedicator of cytokinesis 8 (DOCK8), transcript variant 1, mRNA.	350	DHR-1.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			breast(1)|central_nervous_system(5)|endometrium(2)|kidney(6)|large_intestine(13)|lung(22)|ovary(3)|prostate(3)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(6)	65		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		TTGGTAGATTGAAAAAGTCCT	0.338												
IFNE	338376	broad.mit.edu	37	9	21481472	21481472	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:21481471_21481471CT>C	uc003zpg.3	-	0	842	c.223_223AG>G	c.(223-225)ggafs	p.G75fs	MIR31HG_uc003zpe.2_Intron	NM_176891	NP_795372	Q86WN2	IFNE_HUMAN	Homo sapiens interferon, epsilon (IFNE), mRNA.	75					defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding			large_intestine(2)|lung(1)|skin(1)	4						AGAGTGTGTCCTTTTTGGTAC	0.453												
NFX1	4799	broad.mit.edu	37	9	33294465	33294465	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:33294464_33294464GA>G	uc003zsr.3	+	1	225	c.72_72GA>G	c.(70-72)gagfs	p.E24fs	NFX1_uc011lnw.2_Frame_Shift_Del_p.E24fs|NFX1_uc003zso.3_Frame_Shift_Del_p.E24fs|NFX1_uc003zsp.2_Frame_Shift_Del_p.E24fs|NFX1_uc010mjr.2_Frame_Shift_Del_p.E24fs|NFX1_uc003zsq.3_Frame_Shift_Del_p.E24fs	NM_002504	NP_002495	Q12986	NFX1_HUMAN	Homo sapiens nuclear transcription factor, X-box binding 1 (NFX1), transcript variant 1, mRNA.	24	Interaction with PABPC1 and PABC4.				inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.E24*(1)		central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(8)|lung(4)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	25			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		TTCCTCAGGAGAAAAAAAATT	0.363												
VPS13A	23230	broad.mit.edu	37	9	79840849	79840849	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:79840848_79840848GA>G	uc004akr.3	+	13	1428	c.1168_1168GA>G	c.(1168-1170)gaafs	p.E390fs	VPS13A_uc004akp.4_Frame_Shift_Del_p.E390fs|VPS13A_uc004akq.4_Frame_Shift_Del_p.E390fs|VPS13A_uc004aks.3_Frame_Shift_Del_p.E390fs	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A), transcript variant A, mRNA.	390					Golgi to endosome transport|protein transport	intracellular	protein binding			breast(4)|central_nervous_system(1)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(28)|liver(1)|lung(42)|ovary(3)|pancreas(3)|prostate(3)|skin(9)|upper_aerodigestive_tract(1)|urinary_tract(1)	104						TCAGGAGTTGGAAAAAACCTT	0.284												
VPS13A	23230	broad.mit.edu	37	9	79936099	79936099	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:79936098_79936098CA>C	uc004akr.3	+	42	5689	c.5429_5429CA>C	c.(5428-5430)gcafs	p.A1810fs	VPS13A_uc004akp.4_Frame_Shift_Del_p.A1810fs|VPS13A_uc004akq.4_Frame_Shift_Del_p.A1810fs|VPS13A_uc004aks.3_Frame_Shift_Del_p.A1771fs|VPS13A_uc004akt.3_Frame_Shift_Del_p.A150fs	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A), transcript variant A, mRNA.	1810					Golgi to endosome transport|protein transport	intracellular	protein binding			breast(4)|central_nervous_system(1)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(28)|liver(1)|lung(42)|ovary(3)|pancreas(3)|prostate(3)|skin(9)|upper_aerodigestive_tract(1)|urinary_tract(1)	104						AAAAAGAAAGCAAAAATGGCC	0.303												
ZCCHC6	79670	broad.mit.edu	37	9	88967954	88967954	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:88967953_88967953CT>C	uc004aou.3	-	1	300	c.162_162AG>G	c.(160-162)aagfs	p.K54fs	ZCCHC6_uc011ltf.2_Non-coding_Transcript|ZCCHC6_uc004aoq.3_Frame_Shift_Del_p.K54fs|ZCCHC6_uc004aot.3_Frame_Shift_Del_p.K54fs|ZCCHC6_uc004aor.3_Non-coding_Transcript|ZCCHC6_uc004aos.3_Non-coding_Transcript|ZCCHC6_uc004aov.3_Frame_Shift_Del_p.K54fs|ZCCHC6_uc004aow.3_Frame_Shift_Del_p.K54fs|ZCCHC6_uc010mqf.2_Frame_Shift_Del_p.K54fs	NM_001185059	NP_078893	Q5VYS8	TUT7_HUMAN	Homo sapiens zinc finger, CCHC domain containing 6 (ZCCHC6), transcript variant 2, mRNA.	54					RNA 3'-end processing		RNA uridylyltransferase activity|nucleic acid binding|zinc ion binding			breast(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(10)|liver(1)|lung(14)|ovary(2)|prostate(1)|skin(2)|urinary_tract(1)	46						GTGTTATCTTCTTTTTTTGAA	0.418												
ROR2	4920	broad.mit.edu	37	9	94493292	94493292	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:94493291_94493291GC>G	uc004arj.2	-	6	1283	c.1084_1084GC>C	c.(1084-1086)cacfs	p.H362fs	ROR2_uc004ari.1_Frame_Shift_Del_p.H222fs|ROR2_uc004ark.3_Frame_Shift_Del_p.H362fs	NM_004560	NP_004551	Q01974	ROR2_HUMAN	Homo sapiens receptor tyrosine kinase-like orphan receptor 2 (ROR2), mRNA.	362	Kringle.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|Wnt-protein binding|transmembrane receptor protein tyrosine kinase activity	p.G361A(1)		autonomic_ganglia(1)|breast(1)|central_nervous_system(5)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(12)|lung(31)|ovary(3)|prostate(6)|skin(4)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	71						CAGTAGGCGTGCCCCCCTCCA	0.627												
TMOD1	7111	broad.mit.edu	37	9	100353622	100353623	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:100353621_100353622G>GA	uc004axl.2	+	8	1055_1056	c.919_920G>GA	c.(919-921)gaafs	p.E307fs	TMOD1_uc004axk.2_Frame_Shift_Ins_p.E307fs	NM_001166116	NP_003266	P28289	TMOD1_HUMAN	Homo sapiens tropomodulin 1 (TMOD1), transcript variant 2, mRNA.	307					muscle filament sliding	cytosol	actin binding			breast(1)|central_nervous_system(1)|kidney(3)|large_intestine(3)|lung(2)|urinary_tract(1)	11		Acute lymphoblastic leukemia(62;0.154)		STAD - Stomach adenocarcinoma(157;0.105)		GAGCATGTTGGAAAAAAACGCA	0.426												
ZER1	10444	broad.mit.edu	37	9	131504980	131504980	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:131504979_131504979CG>C	uc004bwa.1	-	8	1838	c.1405_1405CG>G	c.(1405-1407)gagfs	p.E469fs		NM_006336	NP_006327	Q7Z7L7	ZER1_HUMAN	Homo sapiens zer-1 homolog (C. elegans) (ZER1), mRNA.	469					ATP hydrolysis coupled proton transport|regulation of ubiquitin-protein ligase activity	Cul2-RING ubiquitin ligase complex|vacuolar proton-transporting V-type ATPase, V1 domain	protein binding|proton-transporting ATPase activity, rotational mechanism|ubiquitin-protein ligase activity			endometrium(1)|kidney(2)|large_intestine(5)|lung(4)|ovary(1)|prostate(1)|urinary_tract(1)	15						TCCAGCTCCTCGGGGATGCTG	0.632												
NUP214	8021	broad.mit.edu	37	9	134003832	134003834	+	In_Frame_Del	DEL	ATT	ATT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:134003831_134003833CATT>C	uc004cag.3	+	2	465_467	c.354_356CATT>C	c.(352-357)tccatt>tcCt	p.I120del	NUP214_uc004cah.3_In_Frame_Del_p.I120del|NUP214_uc004caf.1_In_Frame_Del_p.I120del	NM_005085	NP_005076	P35658	NU214_HUMAN	Homo sapiens nucleoporin 214kDa (NUP214), mRNA.	120					carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			NS(1)|breast(9)|central_nervous_system(3)|endometrium(13)|kidney(2)|large_intestine(9)|liver(2)|lung(29)|ovary(2)|prostate(3)|skin(7)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	86	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		AATATGGTTCCATTATTGCTTTT	0.409			T	"""DEK, SET, ABL1"""	"""AML, T-ALL"""							
CAMSAP1	157922	broad.mit.edu	37	9	138713266	138713267	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:138713265_138713266GGA>G	uc004cgr.4	-	10	3241_3242	c.3241_3242TCC>C	c.(3241-3243)cccfs	p.P1081fs	CAMSAP1_uc004cgq.4_Frame_Shift_Del_p.P971fs|CAMSAP1_uc010nbg.3_Frame_Shift_Del_p.P803fs	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	Homo sapiens calmodulin regulated spectrin-associated protein 1 (CAMSAP1), mRNA.	1081						cytoplasm|microtubule				breast(3)|central_nervous_system(2)|endometrium(6)|kidney(4)|large_intestine(11)|lung(16)|ovary(3)|pancreas(1)|skin(1)	47				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		CACGCCCGTGGGAGAGAGTGGC	0.624												
TPRN	286262	broad.mit.edu	37	9	140086680	140086680	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr9:140086679_140086679TC>T	uc004clt.3	-	2	2105	c.2105_2105GA>A	c.(2104-2106)gagfs	p.E702fs	TPRN_uc004clu.3_Intron	NM_001128228	NP_001121700	Q4KMQ1	TPRN_HUMAN	Homo sapiens taperin (TPRN), mRNA.	691					sensory perception of sound	stereocilium				breast(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(2)|prostate(2)	8						GGTGTCAGACTCCCCCCAGCG	0.667												
IDI2	91734	broad.mit.edu	37	10	1065556	1065556	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:1065555_1065555AG>A	uc001ifv.1	-	4	651	c.586_586CT>T	c.(586-588)tggfs	p.W196fs		NM_033261	NP_150286	Q9BXS1	IDI2_HUMAN	Homo sapiens isopentenyl-diphosphate delta isomerase 2 (IDI2), mRNA.	196	Nudix hydrolase.				carotenoid biosynthetic process|cholesterol biosynthetic process	cytosol|peroxisome	hydrolase activity|isopentenyl-diphosphate delta-isomerase activity|metal ion binding			kidney(1)|large_intestine(3)|lung(3)|ovary(1)|upper_aerodigestive_tract(1)	9		Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.143)	Epithelial(11;0.067)|OV - Ovarian serous cystadenocarcinoma(14;0.169)|all cancers(11;0.192)		GTTCTTAGCCAGGGGGTGACT	0.567												
FRMD4A	55691	broad.mit.edu	37	10	13696452	13696452	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:13696451_13696451TG>T	uc001ims.3	-	22	3367	c.3015_3015CA>A	c.(3013-3015)ccafs	p.P1005fs	PRPF18_uc001imq.3_Intron|FRMD4A_uc009xjf.1_Frame_Shift_Del_p.P1005fs	NM_018027	NP_060497	Q9P2Q2	FRM4A_HUMAN	Homo sapiens FERM domain containing 4A (FRMD4A), mRNA.	1005	Ser-rich.					cytoplasm|cytoskeleton	binding			breast(4)|endometrium(9)|kidney(2)|large_intestine(11)|lung(9)|ovary(2)|pancreas(1)|prostate(2)|skin(1)	41						GGGGGCTGCTTGGGGGGGTGG	0.532												
MLLT10	8028	broad.mit.edu	37	10	21962452	21962452	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:21962451_21962451AG>A	uc021pny.1	+	9	1224	c.1224_1224AG>A	c.(1222-1224)gaafs	p.E408fs	MLLT10_uc001iqs.3_Frame_Shift_Del_p.E408fs|MLLT10_uc001iqv.3_Non-coding_Transcript|MLLT10_uc001iqt.3_Frame_Shift_Del_p.E408fs|MLLT10_uc001ira.3_Intron|MLLT10_uc001irb.3_5'Flank	NM_001195626	NP_001182555	P55197	AF10_HUMAN	Homo sapiens myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 (MLLT10), transcript variant 3, mRNA.	408	DNA-binding.				positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.V411fs*3(1)		NS(1)|large_intestine(2)|lung(1)|skin(1)|upper_aerodigestive_tract(1)	6						GAAGCCAGGAAGGGGGGGTAA	0.438			T	"""MLL, PICALM, CDK6"""	AL							
DNAJC1	64215	broad.mit.edu	37	10	22208818	22208818	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:22208817_22208817CT>C	uc001irc.3	-	4	866	c.579_579AG>G	c.(577-579)aagfs	p.K193fs	DNAJC1_uc021pnz.1_Non-coding_Transcript	NM_022365	NP_071760	Q96KC8	DNJC1_HUMAN	Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 1 (DNAJC1), mRNA.	193					negative regulation of proteolysis|regulation of protein secretion|regulation of transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	ATPase activator activity|DNA binding|heat shock protein binding|unfolded protein binding			cervix(1)|endometrium(1)|large_intestine(2)|lung(13)|skin(2)|upper_aerodigestive_tract(2)	21		Breast(68;0.00869)|Prostate(175;0.0181)|Lung SC(717;0.0262)				TGCTGCCAGTCTTTTTTTTCT	0.303												
SVIL	6840	broad.mit.edu	37	10	29760116	29760116	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:29760115_29760115TC>T	uc001iut.1	-	30	6340	c.5587_5587GA>A	c.(5587-5589)atgfs	p.M1863fs	LOC387647_uc001iup.3_Intron|LOC387647_uc001iuq.1_Intron|SVIL_uc010qdw.1_Frame_Shift_Del_p.M777fs|SVIL_uc001iuu.1_Frame_Shift_Del_p.M1437fs	NM_021738	NP_068506	O95425	SVIL_HUMAN	Homo sapiens supervillin (SVIL), transcript variant 2, mRNA.	1863					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			breast(1)|central_nervous_system(3)|cervix(1)|endometrium(17)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(24)|lung(35)|ovary(8)|prostate(2)|skin(4)|stomach(7)|upper_aerodigestive_tract(2)|urinary_tract(2)	112		Breast(68;0.103)				TGCACCACCATCCCCCCCTGG	0.527												
ARHGAP12	94134	broad.mit.edu	37	10	32101710	32101711	+	Frame_Shift_Ins	INS	-	-	T	rs143153220		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:32101709_32101710G>GT	uc001ivz.1	-	14	2146_2147	c.1876_1877C>AC	c.(1876-1878)accfs	p.T626fs	ARHGAP12_uc001ivy.1_Frame_Shift_Ins_p.T572fs|ARHGAP12_uc009xls.2_Frame_Shift_Ins_p.T577fs|ARHGAP12_uc001iwb.1_Frame_Shift_Ins_p.T619fs|ARHGAP12_uc001iwc.1_Frame_Shift_Ins_p.T594fs|ARHGAP12_uc009xlq.1_Frame_Shift_Ins_p.T547fs	NM_018287	NP_060757	Q8IWW6	RHG12_HUMAN	Homo sapiens Rho GTPase activating protein 12 (ARHGAP12), mRNA.	626					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			NS(1)|breast(3)|endometrium(2)|kidney(1)|large_intestine(11)|lung(10)|skin(1)|urinary_tract(2)	31		Prostate(175;0.0199)				GTTTTTCTTGGTTTTTTTCTGT	0.317												
BICC1	80114	broad.mit.edu	37	10	60546761	60546761	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:60546760_60546760TA>T	uc001jki.1	+	4	465	c.465_465TA>T	c.(463-465)attfs	p.I155fs		NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	Homo sapiens bicaudal C homolog 1 (Drosophila) (BICC1), mRNA.	155	KH 1.				multicellular organismal development		RNA binding			breast(1)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(9)|lung(22)|ovary(2)|prostate(1)|skin(3)|urinary_tract(1)	44						GCAACAATATTAAAAAAGTGA	0.373												
C10orf107	219621	broad.mit.edu	37	10	63519910	63519911	+	Frame_Shift_Ins	INS	-	-	C	rs143081316		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:63519909_63519910G>GC	uc010qik.2	+	4	686_687	c.381_382G>GC	c.(379-384)gagcccfs	p.E127fs		NM_173554	NP_775825	Q8IVU9	CJ107_HUMAN	Homo sapiens chromosome 10 open reading frame 107 (C10orf107), mRNA.	127								p.E127Q(1)		breast(1)|kidney(1)|lung(4)|prostate(1)|skin(1)	8	Prostate(12;0.016)					CATTCATAGAGCCCCCCACAAT	0.416												
JMJD1C	221037	broad.mit.edu	37	10	64975218	64975218	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:64975217_64975217TA>T	uc001jmn.3	-	7	1123	c.823_splice	c.e7-1	p.S275_splice	JMJD1C_uc001jml.3_Splice_Site_p.S56_splice|JMJD1C_uc001jmm.3_Splice_Site|JMJD1C_uc010qiq.2_Splice_Site_p.S93_splice|JMJD1C_uc009xpi.3_Splice_Site_p.S93_splice|JMJD1C_uc009xpj.2_Splice_Site|JMJD1C_uc001jmp.1_Splice_Site	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	Homo sapiens jumonji domain containing 1C (JMJD1C), transcript variant 1, mRNA.	275					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			breast(2)|central_nervous_system(2)|cervix(1)|endometrium(8)|kidney(8)|large_intestine(9)|lung(27)|ovary(6)|prostate(4)|skin(4)|stomach(3)|upper_aerodigestive_tract(3)	77	Prostate(12;0.0119)|all_hematologic(501;0.191)					ATAATGGCTCTAAAAATAACC	0.373												
CCAR1	55749	broad.mit.edu	37	10	70531074	70531074	+	Frame_Shift_Del	DEL	A	A	-	rs3205757		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:70531073_70531073TA>T	uc001joo.3	+	17	2528	c.2409_2409TA>T	c.(2407-2409)gatfs	p.D803fs	CCAR1_uc001jol.1_Non-coding_Transcript|CCAR1_uc001jom.1_Frame_Shift_Del_p.D608fs|CCAR1_uc009xpx.1_Frame_Shift_Del_p.D777fs|CCAR1_uc001jon.1_Frame_Shift_Del_p.D749fs|CCAR1_uc010qiz.1_Frame_Shift_Del_p.D788fs|CCAR1_uc010qja.1_Frame_Shift_Del_p.D788fs|CCAR1_uc010qjb.2_Non-coding_Transcript	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	Homo sapiens cell division cycle and apoptosis regulator 1 (CCAR1), mRNA.	803	Glu-rich.			EKD -> KKK (in Ref. 6; AAH89420).	apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			NS(1)|autonomic_ganglia(1)|breast(4)|central_nervous_system(3)|cervix(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(9)|lung(13)|ovary(7)|skin(3)	56						aagaaaaggataaaaaaagca	0.338												
KIAA1279	26128	broad.mit.edu	37	10	70775815	70775815	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:70775814_70775814TA>T	uc001joy.3	+	6	1620	c.1508_1508TA>T	c.(1507-1509)gtafs	p.V503fs		NM_015634	NP_056449	Q96EK5	KBP_HUMAN	Homo sapiens KIAA1279 (KIAA1279), nuclear gene encoding mitochondrial protein, mRNA.	503					cell differentiation|mitochondrial transport|nervous system development	mitochondrion	kinesin binding	p.V503I(1)		breast(2)|endometrium(1)|kidney(1)|large_intestine(2)|lung(6)|ovary(1)|skin(1)	14						TCACACATTGTAAAAAAAATA	0.383												
HKDC1	80201	broad.mit.edu	37	10	71003028	71003028	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:71003027_71003027TG>T	uc001jpf.4	+	6	914	c.781_781TG>T	c.(781-783)tggfs	p.W261fs	HKDC1_uc010qje.2_Frame_Shift_Del_p.W124fs	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	Homo sapiens hexokinase domain containing 1 (HKDC1), mRNA.	261					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(9)|lung(11)|ovary(5)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	34						CAACACAGAGTGGGGGGCCTT	0.597												
ADAMTS14	140766	broad.mit.edu	37	10	72520490	72520490	+	Frame_Shift_Del	DEL	G	G	-	rs150968185	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:72520489_72520489CG>C	uc001jrg.3	+	21	3561	c.3561_3561CG>C	c.(3559-3561)cccfs	p.P1187fs	ADAMTS14_uc001jrh.3_Frame_Shift_Del_p.P1184fs	NM_139155	NP_631894	Q8WXS8	ATS14_HUMAN	Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 14 (ADAMTS14), transcript variant 1, mRNA.	1184	Pro-rich.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			NS(1)|autonomic_ganglia(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(11)|lung(15)|ovary(7)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	50						CTACCACCCCCGGGGGGCTGC	0.637												
NDST2	8509	broad.mit.edu	37	10	75563406	75563406	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:75563405_75563405GC>G	uc001jvk.2	-	10	2873	c.2069_2069GC>C	c.(2068-2070)gctfs	p.A690fs	NDST2_uc010qks.1_Frame_Shift_Del_p.A316fs|NDST2_uc010qkt.1_Frame_Shift_Del_p.A567fs|NDST2_uc001jvl.1_Frame_Shift_Del_p.A97fs|NDST2_uc009xro.2_Frame_Shift_Del_p.A316fs|NDST2_uc010qku.1_Frame_Shift_Del_p.A565fs	NM_003635	NP_003626	P52849	NDST2_HUMAN	Homo sapiens N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 (NDST2), mRNA.	690	Heparan sulfate N-sulfotransferase 2.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			cervix(1)|endometrium(4)|kidney(1)|large_intestine(7)|lung(11)|ovary(2)|prostate(2)|skin(1)|urinary_tract(1)	30	Prostate(51;0.0112)					CAGGAGGGCAGCCCCCCGCCG	0.537												
SFTPD	6441	broad.mit.edu	37	10	81706245	81706246	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:81706244_81706245CCT>C	uc001kbh.3	-	1	214_215	c.171_172AGG>G	c.(169-174)gagggcfs	p.E57fs		NM_003019	NP_003010	P35247	SFTPD_HUMAN	Homo sapiens surfactant protein D (SFTPD), mRNA.	57	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of T cell proliferation|negative regulation of interleukin-2 biosynthetic process|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			endometrium(1)|kidney(3)|large_intestine(5)|lung(3)|skin(4)|urinary_tract(1)	17	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			CCCCGAGGGCCCTCTCTCCCAT	0.614												
WAPAL	23063	broad.mit.edu	37	10	88259565	88259565	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:88259564_88259564CT>C	uc001kdn.3	-	3	1574	c.1565_1565AG>G	c.(1564-1566)agafs	p.R522fs	WAPAL_uc001kdo.3_Frame_Shift_Del_p.R479fs|WAPAL_uc009xsw.3_Frame_Shift_Del_p.R479fs	NM_015045	NP_055860	Q7Z5K2	WAPL_HUMAN	Homo sapiens wings apart-like homolog (Drosophila) (WAPAL), mRNA.	479	Mediates interaction with the cohesin complex.				cell division|interspecies interaction between organisms|mitosis|negative regulation of DNA replication|negative regulation of chromatin binding|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding			breast(2)|endometrium(2)|kidney(5)|large_intestine(6)|lung(13)|ovary(2)|stomach(1)	31						TGTTTTAGTTCTTTTTTTGCT	0.383												
PDE6C	5146	broad.mit.edu	37	10	95399929	95399929	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:95399928_95399928GT>G	uc001kiu.4	+	11	1722	c.1584_1584GT>G	c.(1582-1584)ctgfs	p.L528fs		NM_006204	NP_006195	P51160	PDE6C_HUMAN	Homo sapiens phosphodiesterase 6C, cGMP-specific, cone, alpha prime (PDE6C), mRNA.	528					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			breast(3)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(10)|lung(12)|ovary(2)|pancreas(1)|skin(4)|upper_aerodigestive_tract(1)	42		Colorectal(252;0.123)				GAATACGACTGTTTTTTGAAA	0.423												
C10orf12	26148	broad.mit.edu	37	10	98743848	98743849	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:98743847_98743848T>TC	uc001kmv.3	+	0	2807_2808	c.2700_2701T>TC	c.(2698-2703)gttcccfs	p.V900fs		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	Homo sapiens chromosome 10 open reading frame 12 (C10orf12), mRNA.	900										NS(1)|breast(2)|endometrium(3)|kidney(1)|large_intestine(8)|lung(19)|ovary(3)|prostate(2)|skin(2)|stomach(4)	45		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		CAGGAGACGTTCCCCCTGTCAA	0.436												
CHUK	1147	broad.mit.edu	37	10	101969415	101969417	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:101969414_101969416AAAG>A	uc001kqp.3	-	9	1119_1121	c.1064_1066CTTT>T	c.(1063-1068)ctttca>cTca	p.S356del		NM_001278	NP_001269	O15111	IKKA_HUMAN	Homo sapiens conserved helix-loop-helix ubiquitous kinase (CHUK), mRNA.	356					I-kappaB phosphorylation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|T cell receptor signaling pathway|Toll signaling pathway|innate immune response|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|nucleus	ATP binding|IkappaB kinase activity|identical protein binding			breast(1)|central_nervous_system(2)|endometrium(2)|large_intestine(9)|lung(8)|ovary(2)|prostate(1)|skin(1)|stomach(1)	27		Colorectal(252;0.117)		Epithelial(162;2.05e-10)|all cancers(201;1.91e-08)		CCTGTCTCTGAAAGAAGTTCTTG	0.365												
PAX2	5076	broad.mit.edu	37	10	102509529	102509530	+	Frame_Shift_Ins	INS	-	-	G	rs75462234		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:102509528_102509529C>CG	uc001krk.4	+	1	619_620	c.69_70C>CG	c.(67-72)ctcgggfs	p.L23fs	PAX2_uc001krm.4_Frame_Shift_Ins_p.L23fs|PAX2_uc001krn.4_Frame_Shift_Ins_p.L23fs|PAX2_uc001kro.4_Frame_Shift_Ins_p.L23fs|PAX2_uc010qps.2_Frame_Shift_Ins_p.L22fs|PAX2_uc001krl.4_Frame_Shift_Ins_p.L23fs|PAX2_uc001krp.1_Frame_Shift_Ins_p.L27fs	NM_003990	NP_003981	Q02962	PAX2_HUMAN	Homo sapiens paired box 2 (PAX2), transcript variant e, mRNA.	23	Paired.				anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity			endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(10)|prostate(1)|upper_aerodigestive_tract(1)	18		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		TGAACCAGCTCGGGGGGGTGTT	0.663												
NOLC1	9221	broad.mit.edu	37	10	103919299	103919300	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:103919298_103919299C>CA	uc001kup.2	+	6	1097_1098	c.862_863C>CA	c.(862-864)caafs	p.Q288fs	NOLC1_uc001kuo.2_Frame_Shift_Ins_p.Q278fs|NOLC1_uc001kuq.2_Frame_Shift_Ins_p.Q279fs|NOLC1_uc009xxb.1_5'UTR|NOLC1_uc001kur.2_5'UTR	NM_004741	NP_004732	Q14978	NOLC1_HUMAN	Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA.	278	11 X 12 AA approximate repeats of an acidic serine cluster.|Interacts with RPA194.				mitosis|rRNA processing	cytoplasm|nucleolus	ATP binding|GTP binding|protein binding			breast(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(10)|lung(12)|ovary(1)|upper_aerodigestive_tract(1)	31		Colorectal(252;0.122)		Epithelial(162;5.19e-08)|all cancers(201;9.43e-07)		GGAAGAGGAGCAAAAAAAACCC	0.525												
SORCS1	114815	broad.mit.edu	37	10	108434854	108434854	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:108434853_108434853CA>C	uc001kyl.3	-	13	2076	c.1894_1894TG>G	c.(1894-1896)gtgfs	p.V632fs	SORCS1_uc021pxw.1_Frame_Shift_Del_p.V632fs|SORCS1_uc009xxs.3_Frame_Shift_Del_p.V632fs|SORCS1_uc001kym.3_Frame_Shift_Del_p.V632fs|SORCS1_uc001kyn.2_Frame_Shift_Del_p.V632fs|SORCS1_uc001kyo.3_Frame_Shift_Del_p.V632fs	NM_001013031	NP_001013049	Q8WY21	SORC1_HUMAN	Homo sapiens sortilin-related VPS10 domain containing receptor 1 (SORCS1), transcript variant 2, mRNA.	632						integral to membrane	neuropeptide receptor activity|protein binding	p.F631C(1)		breast(5)|central_nervous_system(1)|cervix(2)|endometrium(9)|kidney(2)|large_intestine(24)|lung(69)|ovary(1)|prostate(8)|skin(1)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	127		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		ACCCCATCCACAAAAAGTGGA	0.393												
SORCS1	114815	broad.mit.edu	37	10	108489875	108489875	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:108489874_108489874TA>T	uc001kyl.3	-	6	1142	c.960_splice	c.e6-1	p.W320_splice	SORCS1_uc021pxw.1_Splice_Site_p.W320_splice|SORCS1_uc009xxs.3_Splice_Site_p.W320_splice|SORCS1_uc001kym.3_Splice_Site_p.W320_splice|SORCS1_uc001kyn.2_Splice_Site_p.W320_splice|SORCS1_uc001kyo.3_Splice_Site_p.W320_splice	NM_001013031	NP_001013049	Q8WY21	SORC1_HUMAN	Homo sapiens sortilin-related VPS10 domain containing receptor 1 (SORCS1), transcript variant 2, mRNA.	320						integral to membrane	neuropeptide receptor activity|protein binding			breast(5)|central_nervous_system(1)|cervix(2)|endometrium(9)|kidney(2)|large_intestine(24)|lung(69)|ovary(1)|prostate(8)|skin(1)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	127		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		ATCACAGACCTAAAAAATGGA	0.423												
BTBD16	118663	broad.mit.edu	37	10	124066813	124066813	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:124066812_124066812AT>A	uc001lgc.1	+	9	1151	c.900_900AT>A	c.(898-900)acafs	p.T300fs	BTBD16_uc001lgd.1_Frame_Shift_Del_p.T299fs	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	Homo sapiens BTB (POZ) domain containing 16 (BTBD16), mRNA.	300										breast(1)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(5)|lung(3)|skin(2)|stomach(1)|urinary_tract(1)	15		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				CCGTGATGACATTTTTTAAGA	0.358												
ZRANB1	54764	broad.mit.edu	37	10	126660638	126660638	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:126660637_126660637AT>A	uc010qug.2	+	3	1288	c.1184_1184AT>A	c.(1183-1185)gatfs	p.D395fs	ZRANB1_uc001lic.3_Frame_Shift_Del_p.D369fs	NM_017580	NP_060050	Q9UGI0	ZRAN1_HUMAN	Homo sapiens zinc finger, RAN-binding domain containing 1 (ZRANB1), mRNA.	369	TRAF-binding.				Wnt receptor signaling pathway|positive regulation of Wnt receptor signaling pathway|protein K63-linked deubiquitination	aggresome|centrosome|intermediate filament cytoskeleton|nucleolus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			NS(1)|breast(1)|endometrium(5)|kidney(5)|large_intestine(2)|lung(3)|ovary(2)|prostate(1)|skin(2)|urinary_tract(1)	23		all_lung(145;0.0132)|Lung NSC(174;0.0193)|all_neural(114;0.116)|Colorectal(57;0.172)		Colorectal(40;0.113)|COAD - Colon adenocarcinoma(40;0.119)		AGAAAGGGGGATTTTGCTTGC	0.388												
MKI67	4288	broad.mit.edu	37	10	129913250	129913250	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:129913249_129913249AC>A	uc001lke.3	-	6	1618	c.1423_1423GT>T	c.(1423-1425)tgcfs	p.C475fs	MKI67_uc001lkf.3_Intron|MKI67_uc009yav.1_Intron|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	Homo sapiens antigen identified by monoclonal antibody Ki-67 (MKI67), transcript variant 1, mRNA.	475					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			NS(2)|autonomic_ganglia(1)|breast(2)|central_nervous_system(2)|cervix(2)|endometrium(14)|haematopoietic_and_lymphoid_tissue(5)|kidney(7)|large_intestine(30)|lung(64)|ovary(4)|pancreas(1)|prostate(4)|skin(2)|soft_tissue(1)|stomach(10)|upper_aerodigestive_tract(4)|urinary_tract(4)	159		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				AACCCAGAGCACATCTGTCCA	0.383												
EBF3	253738	broad.mit.edu	37	10	131666125	131666125	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:131666124_131666124AC>A	uc021qav.1	-	8	866	c.765_765GT>T	c.(763-765)ggtfs	p.G255fs	EBF3_uc001lki.2_Frame_Shift_Del_p.G269fs	NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	Homo sapiens early B-cell factor 3 (EBF3), mRNA.	278					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(8)|lung(23)|ovary(1)|pancreas(1)|prostate(1)|skin(1)	44		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		TGACGGTGGCACCCCCCGTGG	0.577												
PWWP2B	170394	broad.mit.edu	37	10	134218255	134218255	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:134218254_134218254TC>T	uc001lll.4	+	1	279	c.250_250TC>T	c.(250-252)tccfs	p.S84fs	PWWP2B_uc009ybe.3_Frame_Shift_Del_p.S84fs	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	Homo sapiens PWWP domain containing 2B (PWWP2B), transcript variant 1, mRNA.	84										central_nervous_system(1)|endometrium(1)|large_intestine(1)|lung(5)|urinary_tract(1)	9		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		GGGGTCCAGCTCCCCCCCTCC	0.746												
TUBGCP2	10844	broad.mit.edu	37	10	135111566	135111567	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr10:135111565_135111566A>AT	uc010qvc.1	-	4	863_864	c.506_507T>AT	c.(505-507)aatfs	p.N169fs	TUBGCP2_uc001lmg.1_Frame_Shift_Ins_p.N169fs|TUBGCP2_uc010qvd.1_Frame_Shift_Ins_p.N39fs|TUBGCP2_uc009ybk.1_Frame_Shift_Ins_p.N169fs|TUBGCP2_uc001lmh.1_Non-coding_Transcript	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	Homo sapiens tubulin, gamma complex associated protein 2 (TUBGCP2), mRNA.	169					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding			breast(2)|cervix(1)|endometrium(1)|kidney(3)|large_intestine(6)|lung(16)|ovary(2)|prostate(3)|upper_aerodigestive_tract(1)	35		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		GCTGGCCTGAATTTTTTTTGTT	0.455												
B4GALNT4	338707	broad.mit.edu	37	11	375700	375700	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:375699_375699TG>T	uc001lpb.3	+	9	920	c.911_911TG>T	c.(910-912)gtgfs	p.V304fs		NM_178537	NP_848632	Q76KP1	B4GN4_HUMAN	Homo sapiens beta-1,4-N-acetyl-galactosaminyl transferase 4 (B4GALNT4), mRNA.	304						Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			endometrium(2)|kidney(4)|large_intestine(1)|liver(2)|lung(7)|ovary(2)|pancreas(1)|prostate(4)|upper_aerodigestive_tract(1)	24		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCCAGCCACGTGGGGGGGCGT	0.672												
MUC5B	727897	broad.mit.edu	37	11	1269737	1269737	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:1269736_1269736AC>A	uc001lta.3	+	30	11685	c.11626_11626AC>A	c.(11626-11628)accfs	p.T3876fs		NM_002458	NP_002449	Q9HC84	MUC5B_HUMAN	Homo sapiens mucin 5B, oligomeric mucus/gel-forming (MUC5B), mRNA.	3876	11 X approximate tandem repeats, Ser/Thr- rich.|7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding			cervix(2)|endometrium(36)|kidney(9)|lung(89)|urinary_tract(1)	137		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CTTCACAGTCACCCCCTCCTC	0.647												
TNNT3	7140	broad.mit.edu	37	11	1955030	1955032	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:1955029_1955031AAGG>A	uc001luu.4	+	9	462_464	c.250_252AAGG>A	c.(250-252)aag>A	p.K84del	TNNT3_uc001lun.2_Intron|TNNT3_uc001luw.4_In_Frame_Del_p.K76del|TNNT3_uc001luo.4_In_Frame_Del_p.K76del|TNNT3_uc001lup.4_In_Frame_Del_p.K82del|TNNT3_uc001luq.4_In_Frame_Del_p.K76del|TNNT3_uc001lur.3_In_Frame_Del_p.K76del|TNNT3_uc010qxf.2_In_Frame_Del_p.K82del|TNNT3_uc010qxg.2_In_Frame_Del_p.K16del	NM_006757	NP_006748	P45378	TNNT3_HUMAN	Homo sapiens troponin T type 3 (skeletal, fast) (TNNT3), transcript variant 1, mRNA.	95					muscle filament sliding|regulation of ATPase activity|regulation of striated muscle contraction|skeletal muscle contraction	cytosol|troponin complex	calcium-dependent protein binding|tropomyosin binding|troponin C binding|troponin I binding			breast(2)|endometrium(1)|kidney(1)|lung(8)|ovary(1)|prostate(1)|skin(4)|stomach(1)	19		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00253)|Lung(200;0.0333)|LUSC - Lung squamous cell carcinoma(625;0.0826)		AGCCCGGAAGAAGGAGGAGGAGG	0.606												
OSBPL5	114879	broad.mit.edu	37	11	3141800	3141800	+	Frame_Shift_Del	DEL	C	C	-	rs142011119		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:3141799_3141799AC>A	uc001lxk.2	-	5	616	c.458_458GT>T	c.(457-459)gtgfs	p.V153fs	OSBPL5_uc010qxq.1_Frame_Shift_Del_p.V105fs|OSBPL5_uc009ydw.2_Intron|OSBPL5_uc001lxl.2_Intron|OSBPL5_uc009ydx.3_Frame_Shift_Del_p.V177fs	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	Homo sapiens oxysterol binding protein-like 5 (OSBPL5), transcript variant 1, mRNA.	153	PH.				Golgi to plasma membrane transport|cholesterol metabolic process|cholesterol transport	cytosol	oxysterol binding|protein binding			breast(2)|central_nervous_system(1)|endometrium(2)|kidney(3)|large_intestine(7)|lung(8)|prostate(1)|upper_aerodigestive_tract(1)	25		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		GATGAGCAGCACCCCCGGCTT	0.672												
ZNF195	7748	broad.mit.edu	37	11	3381419	3381419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:3381418_3381418AT>A	uc001lxt.3	-	5	1002	c.820_820AT>T	c.(820-822)tgtfs	p.C274fs	ZNF195_uc010qxr.2_Frame_Shift_Del_p.C255fs|ZNF195_uc009ydz.3_Frame_Shift_Del_p.C229fs|ZNF195_uc001lxu.3_Frame_Shift_Del_p.C206fs|ZNF195_uc001lxv.3_Frame_Shift_Del_p.C251fs|ZNF195_uc021qck.1_Frame_Shift_Del_p.C206fs|ZNF195_uc001lxs.3_Frame_Shift_Del_p.C202fs	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	Homo sapiens zinc finger protein 195 (ZNF195), transcript variant 1, mRNA.	274					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(4)|kidney(1)|large_intestine(2)|lung(9)|ovary(1)	17		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		CATTCTCCACATTTTTGGAAT	0.368												
DCHS1	8642	broad.mit.edu	37	11	6648359	6648360	+	Frame_Shift_Ins	INS	-	-	G	rs138329507		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:6648358_6648359C>CG	uc001mem.1	-	13	6312_6313	c.5911_5912G>CG	c.(5911-5913)cgcfs	p.R1971fs		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	Homo sapiens dachsous 1 (Drosophila) (DCHS1), mRNA.	1971	Cadherin 19.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(4)|kidney(4)|large_intestine(16)|liver(1)|lung(41)|ovary(4)|pancreas(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(6)|urinary_tract(4)	103		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGGCCTGGGCGGGGCAGACGT	0.614												
OR2D3	120775	broad.mit.edu	37	11	6942864	6942864	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:6942863_6942863AC>A	uc010rav.2	+	0	631	c.631_631AC>A	c.(631-633)acafs	p.T211fs		NM_001004684	NP_001004684	Q8NGH3	OR2D3_HUMAN	Homo sapiens olfactory receptor, family 2, subfamily D, member 3 (OR2D3), mRNA.	211					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.S210R(1)		breast(1)|endometrium(2)|large_intestine(7)|lung(12)|prostate(3)|skin(1)|stomach(1)	27		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CACTTACAGCACAGAAATGGC	0.448												
SPTY2D1	144108	broad.mit.edu	37	11	18636367	18636367	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:18636366_18636366CG>C	uc001moy.3	-	2	1671	c.1455_1455CG>G	c.(1453-1455)ccgfs	p.P485fs	SPTY2D1_uc010rdi.1_Frame_Shift_Del_p.P485fs	NM_194285	NP_919261	Q68D10	SPT2_HUMAN	Homo sapiens SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) (SPTY2D1), mRNA.	485	Ser-rich.							p.P485P(2)		breast(4)|cervix(3)|endometrium(2)|kidney(3)|large_intestine(7)|lung(9)|skin(1)|stomach(1)	30						CAGACCGCCCCGGGGGGCCCA	0.602												
CCDC34	91057	broad.mit.edu	37	11	27384534	27384534	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:27384533_27384533AG>A	uc001mrh.1	-	0	263	c.209_209CT>T	c.(208-210)cttfs	p.L70fs	CCDC34_uc001mri.1_Frame_Shift_Del_p.L70fs	NM_030771	NP_110398	Q96HJ3	CCD34_HUMAN	Homo sapiens coiled-coil domain containing 34 (CCDC34), transcript variant 1, mRNA.	70										endometrium(2)|large_intestine(4)|lung(1)|prostate(1)|urinary_tract(1)	9						CTGGTGGCCAAGGGGAGACAA	0.627												
ABTB2	25841	broad.mit.edu	37	11	34180846	34180846	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:34180845_34180845GA>G	uc001mvl.2	-	13	3120	c.2695_2695TC>C	c.(2695-2697)cagfs	p.Q899fs		NM_145804	NP_665803	A8K6S9	A8K6S9_HUMAN	Homo sapiens ankyrin repeat and BTB (POZ) domain containing 2 (ABTB2), mRNA.	713							DNA binding			breast(2)|central_nervous_system(2)|endometrium(4)|kidney(2)|large_intestine(1)|lung(6)|prostate(1)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	25		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				CCACACACCTGAAAAATGTGG	0.522												
PAMR1	25891	broad.mit.edu	37	11	35513670	35513671	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:35513669_35513670A>AC	uc001mwf.3	-	2	345_346	c.302_303T>GT	c.(301-303)ggtfs	p.G101fs	PAMR1_uc001mwg.3_Frame_Shift_Ins_p.G101fs|PAMR1_uc010rew.2_Frame_Shift_Ins_p.G101fs|PAMR1_uc010rex.2_Frame_Shift_Ins_p.G61fs	NM_015430	NP_056245	Q6UXH9	PAMR1_HUMAN	Homo sapiens peptidase domain containing associated with muscle regeneration 1 (PAMR1), transcript variant 1, mRNA.	101					proteolysis	extracellular region	serine-type endopeptidase activity			breast(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(6)|lung(8)|ovary(3)|upper_aerodigestive_tract(1)	26						CATCCAAGGTACCCCCCCATGA	0.520												
CKAP5	9793	broad.mit.edu	37	11	46812114	46812114	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:46812113_46812113CT>C	uc001ndi.2	-	13	1797	c.1671_1671AG>G	c.(1669-1671)aagfs	p.K557fs	CKAP5_uc009ylg.1_Frame_Shift_Del_p.K443fs|CKAP5_uc001ndj.2_Frame_Shift_Del_p.K557fs	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	Homo sapiens cytoskeleton associated protein 5 (CKAP5), transcript variant 1, mRNA.	557					G2/M transition of mitotic cell cycle|RNA transport|cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|mitotic prometaphase|spindle organization	centrosome|cytosol	protein binding			breast(1)|cervix(3)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(7)|lung(13)|ovary(1)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	43						CTGGTTTCCCCTTTTTTGGTG	0.388												
OR5F1	338674	broad.mit.edu	37	11	55761672	55761672	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:55761671_55761671AT>A	uc010riv.2	-	0	431	c.431_431AT>T	c.(430-432)atgfs	p.M144fs		NM_003697	NP_003688	O95221	OR5F1_HUMAN	Homo sapiens olfactory receptor, family 5, subfamily F, member 1 (OR5F1), mRNA.	144					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.M144I(2)		endometrium(6)|kidney(1)|large_intestine(11)|liver(1)|lung(33)|ovary(2)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	58	Esophageal squamous(21;0.00448)					CCCGGCTGCCATTTTTAGGTA	0.502												
OR5T3	390154	broad.mit.edu	37	11	56020656	56020656	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:56020655_56020655TA>T	uc010rjd.2	+	0	980	c.980_980TA>T	c.(979-981)gtafs	p.V327fs		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	Homo sapiens olfactory receptor, family 5, subfamily T, member 3 (OR5T3), mRNA.	327					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)|cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(3)|lung(23)|prostate(2)|skin(2)|upper_aerodigestive_tract(3)	39	Esophageal squamous(21;0.00448)					AACAAAGAAGTAAAAAAGGCA	0.318												
OR5AK2	390181	broad.mit.edu	37	11	56756569	56756569	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:56756568_56756568CT>C	uc010rjp.2	+	0	180	c.180_180CT>C	c.(178-180)tacfs	p.Y60fs		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	Homo sapiens olfactory receptor, family 5, subfamily AK, member 2 (OR5AK2), mRNA.	60					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.T59T(1)		breast(3)|endometrium(1)|large_intestine(4)|lung(3)|ovary(3)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	21						CACTCACGTACTTTTTTCTAC	0.353												
TNKS1BP1	85456	broad.mit.edu	37	11	57077118	57077119	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:57077117_57077118CCT>C	uc001njr.3	-	4	3379_3380	c.3067_3068AGG>G	c.(3067-3069)ggafs	p.G1023fs	TNKS1BP1_uc001njs.3_Frame_Shift_Del_p.G1023fs|TNKS1BP1_uc009ymd.1_Frame_Shift_Del_p.G474fs	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	Homo sapiens tankyrase 1 binding protein 1, 182kDa (TNKS1BP1), mRNA.	1023	Acidic.|Gly-rich.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			breast(3)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(11)|lung(24)|ovary(3)|prostate(3)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(1)	64		all_epithelial(135;0.21)				GCCCCCGGATCCTCTCTCTCCT	0.594												
TNKS1BP1	85456	broad.mit.edu	37	11	57077573	57077574	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:57077572_57077573ATC>A	uc001njr.3	-	4	2924_2925	c.2612_2613GAT>T	c.(2611-2613)gatfs	p.D871fs	TNKS1BP1_uc001njs.3_Frame_Shift_Del_p.D871fs|TNKS1BP1_uc009ymd.1_Frame_Shift_Del_p.D322fs	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	Homo sapiens tankyrase 1 binding protein 1, 182kDa (TNKS1BP1), mRNA.	871	Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			breast(3)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(11)|lung(24)|ovary(3)|prostate(3)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(1)	64		all_epithelial(135;0.21)				TACCCAGTGAATCTCTCTTTCC	0.530												
OR5B2	390190	broad.mit.edu	37	11	58190572	58190573	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:58190571_58190572G>GA	uc010rkg.2	-	0	215_216	c.163_164C>TC	c.(163-165)accfs	p.T55fs		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	Homo sapiens olfactory receptor, family 5, subfamily B, member 2 (OR5B2), mRNA.	55					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.H54Y(1)|p.T55T(1)		NS(2)|large_intestine(2)|lung(19)|ovary(3)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	32	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GTACATGGGGGTGTGGAGACAA	0.505												
EML3	256364	broad.mit.edu	37	11	62378802	62378802	+	Frame_Shift_Del	DEL	G	G	-	rs11553576	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:62378801_62378801TG>T	uc010rly.1	-	2	518	c.210_210CA>A	c.(208-210)ccafs	p.P70fs	EML3_uc001ntr.1_Frame_Shift_Del_p.P42fs|EML3_uc001nts.1_Frame_Shift_Del_p.P42fs|EML3_uc001ntt.1_5'UTR|EML3_uc001ntu.1_Frame_Shift_Del_p.P70fs|EML3_uc009yny.1_5'UTR|ROM1_uc001ntv.3_5'Flank			Q32P44	EMAL3_HUMAN	Homo sapiens echinoderm microtubule associated protein like 3 (EML3), mRNA.	70						cytoplasm|microtubule	protein binding			biliary_tract(1)|breast(3)|endometrium(4)|kidney(2)|large_intestine(1)|lung(11)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	26						GTGGCAGTCCTGGGGGGGCTG	0.602												
SHANK2	22941	broad.mit.edu	37	11	70331959	70331959	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:70331958_70331958AG>A	uc001oqc.3	-	20	4354	c.4242_4242CT>T	c.(4240-4242)cctfs	p.P1414fs	SHANK2_uc010rqn.2_Frame_Shift_Del_p.P890fs|SHANK2_uc001opz.3_Frame_Shift_Del_p.P885fs|BC127192_uc009ysn.1_Intron|SHANK2_uc001opy.3_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	Homo sapiens SH3 and multiple ankyrin repeat domains 2 (SHANK2), transcript variant 1, mRNA.	1101	SAM.				intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|SH3 domain binding|ionotropic glutamate receptor binding			NS(2)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(4)|lung(30)|ovary(3)|pancreas(2)|prostate(3)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	62			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CAAAGCTTTCAGGGGGTGGCA	0.587												
PDE2A	5138	broad.mit.edu	37	11	72294542	72294542	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:72294541_72294541CT>C	uc010rrc.2	-	19	1915	c.1669_1669AG>G	c.(1669-1671)gtgfs	p.V557fs	PDE2A_uc001oso.3_Frame_Shift_Del_p.V536fs|PDE2A_uc010rra.2_Frame_Shift_Del_p.V550fs|PDE2A_uc001osn.3_Frame_Shift_Del_p.V301fs|PDE2A_uc010rrb.2_Frame_Shift_Del_p.V548fs|PDE2A_uc010rrd.2_Frame_Shift_Del_p.V442fs	NM_002599	NP_002590	O00408	PDE2A_HUMAN	Homo sapiens phosphodiesterase 2A, cGMP-stimulated (PDE2A), transcript variant 1, mRNA.	557					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			breast(2)|endometrium(1)|kidney(3)|large_intestine(2)|lung(21)|ovary(2)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	36			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	GCCTCATTCACTTTTTTGTAT	0.512												
ARAP1	116985	broad.mit.edu	37	11	72404518	72404518	+	Splice_Site	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:72404517_72404517TG>T	uc001osu.3	-	29	3998	c.3809_splice	c.e29-1	p.A1270_splice	ARAP1_uc001osv.3_Splice_Site_p.A1270_splice|ARAP1_uc001osr.3_Splice_Site_p.A1030_splice|ARAP1_uc001oss.3_Splice_Site_p.A1025_splice|ARAP1_uc009yth.3_Splice_Site_p.A964_splice|ARAP1_uc010rre.2_Splice_Site_p.A1025_splice|BC150585_uc009yti.1_Non-coding_Transcript	NM_001040118	NP_056057	Q96P48	ARAP1_HUMAN	Homo sapiens ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 (ARAP1), transcript variant 3, mRNA.	1270					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	Golgi cisterna membrane|cytosol|plasma membrane	ARF GTPase activator activity|Rho GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|zinc ion binding			cervix(2)|endometrium(2)|large_intestine(10)|lung(8)|ovary(1)|skin(3)|urinary_tract(1)	27						CACGGCTGGCTGGGGGGTGGG	0.662												
ARHGEF17	9828	broad.mit.edu	37	11	73021527	73021527	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:73021526_73021526GC>G	uc001otu.3	+	0	1864	c.1843_1843GC>G	c.(1843-1845)gccfs	p.A615fs		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Homo sapiens Rho guanine nucleotide exchange factor (GEF) 17 (ARHGEF17), mRNA.	615					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(15)|ovary(2)|skin(2)	32						TGGAAGCGATGCCCCCCCTGG	0.617												
FAT3	120114	broad.mit.edu	37	11	92088049	92088049	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:92088048_92088048GT>G	uc001pdj.4	+	0	2787	c.2770_2770GT>G	c.(2770-2772)gttfs	p.V924fs		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	Homo sapiens FAT tumor suppressor homolog 3 (Drosophila) (FAT3), mRNA.	924	Cadherin 8.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding	p.D923Y(2)		NS(1)|breast(2)|endometrium(10)|kidney(4)|large_intestine(11)|liver(2)|lung(37)|ovary(5)|pancreas(1)|prostate(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(5)	85		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CACTCTTAAAGTTTTTTTAGA	0.443										TCGA Ovarian(4;0.039)		
FAT3	120114	broad.mit.edu	37	11	92533399	92533399	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:92533398_92533398GC>G	uc001pdj.4	+	8	7236	c.7219_7219GC>G	c.(7219-7221)gccfs	p.A2407fs		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	Homo sapiens FAT tumor suppressor homolog 3 (Drosophila) (FAT3), mRNA.	2407	Cadherin 22.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			NS(1)|breast(2)|endometrium(10)|kidney(4)|large_intestine(11)|liver(2)|lung(37)|ovary(5)|pancreas(1)|prostate(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(5)	85		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GAGTGAATTAGCCCCCCGGGG	0.438										TCGA Ovarian(4;0.039)		
TAF1D	79101	broad.mit.edu	37	11	93471453	93471453	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:93471452_93471452CT>C	uc001ped.3	-	2	525	c.282_282AG>G	c.(280-282)aagfs	p.K94fs	TAF1D_uc001pec.3_5'Flank|TAF1D_uc001pdz.3_Non-coding_Transcript	NM_024116	NP_077021	Q9H5J8	TAF1D_HUMAN	Homo sapiens TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa (TAF1D), mRNA.	94					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			large_intestine(1)|lung(3)|prostate(1)|skin(2)	7						TCCTCTTTTTCTTTTTTTTAT	0.343												
MMP3	4314	broad.mit.edu	37	11	102713563	102713563	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:102713562_102713562AT>A	uc001phj.1	-	1	256	c.191_191AT>T	c.(190-192)atcfs	p.I64fs		NM_002422	NP_002413	P08254	MMP3_HUMAN	Homo sapiens matrix metallopeptidase 3 (stromelysin 1, progelatinase) (MMP3), mRNA.	64					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			endometrium(2)|kidney(3)|large_intestine(3)|liver(1)|lung(7)|ovary(2)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	22		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	CATTTCTCGGATTTTTTTAAC	0.438												
GRIA4	2893	broad.mit.edu	37	11	105732822	105732822	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:105732821_105732821GA>G	uc001pix.2	+	4	1005	c.559_559GA>G	c.(559-561)gaafs	p.E187fs	GRIA4_uc001piu.1_Frame_Shift_Del_p.E187fs|GRIA4_uc001piw.2_Frame_Shift_Del_p.E187fs|GRIA4_uc001piv.3_Frame_Shift_Del_p.E187fs|GRIA4_uc009yxk.1_Frame_Shift_Del_p.E187fs	NM_000829	NP_000820	P48058	GRIA4_HUMAN	Homo sapiens glutamate receptor, ionotrophic, AMPA 4 (GRIA4), transcript variant 1, mRNA.	187					glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(5)|kidney(1)|large_intestine(24)|liver(2)|lung(25)|ovary(4)|pancreas(1)|prostate(3)|skin(5)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(6)	82		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	TATATGTGTGGAAAATTTTAA	0.353												
ALKBH8	91801	broad.mit.edu	37	11	107431569	107431571	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:107431568_107431570ACTT>A	uc010rvr.2	-	1	125_127	c.50_52AAGT>T	c.(49-54)aagttc>aTtc	p.17_18KF>I	ALKBH8_uc009yxp.3_In_Frame_Del_p.17_18KF>I|ALKBH8_uc001pjl.3_Non-coding_Transcript	NM_138775	NP_620130	Q96BT7	ALKB8_HUMAN	Homo sapiens alkB, alkylation repair homolog 8 (E. coli) (ALKBH8), mRNA.	17					response to DNA damage stimulus	cytosol|nucleus	RNA binding|metal ion binding|nucleotide binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|protein binding|tRNA (uracil) methyltransferase activity			breast(2)|large_intestine(2)|lung(5)	9		Melanoma(852;0.000288)|Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00301)|all_epithelial(67;0.00512)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.53e-05)|Epithelial(105;0.00029)|all cancers(92;0.00518)		TTCCTTAAGAACTTCTTCTCAGT	0.360												
EXPH5	23086	broad.mit.edu	37	11	108381751	108381751	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:108381750_108381750AT>A	uc001pkk.3	-	5	4595	c.4484_4484AT>T	c.(4483-4485)atgfs	p.M1495fs	EXPH5_uc010rvz.2_Frame_Shift_Del_p.M1339fs|EXPH5_uc010rvy.2_Frame_Shift_Del_p.M1307fs	NM_015065	NP_055880	Q149M6	Q149M6_HUMAN	Homo sapiens exophilin 5 (EXPH5), mRNA.	1495					intracellular protein transport		Rab GTPase binding			breast(3)|central_nervous_system(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(7)|large_intestine(13)|liver(1)|lung(34)|ovary(3)|pancreas(2)|prostate(2)|skin(11)|stomach(3)|upper_aerodigestive_tract(1)	91		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TTTATTAGTCATTTTTTGGCA	0.473												
C11orf88	399949	broad.mit.edu	37	11	111385566	111385567	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:111385565_111385566G>GC	uc009yyd.3	+	0	56_57	c.56_57G>GC	c.(55-57)tgcfs	p.C19fs	BTG4_uc001plj.3_5'Flank|BTG4_uc001plk.3_5'Flank|C11orf88_uc001plo.1_Frame_Shift_Ins_p.C19fs|C11orf88_uc001pln.4_Frame_Shift_Ins_p.C19fs	NM_207430	NP_997313	Q6PI97	CK088_HUMAN	Homo sapiens chromosome 11 open reading frame 88 (C11orf88), transcript variant 1, mRNA.	19										endometrium(1)|large_intestine(3)|lung(2)	6						CAGGAAATGTGCCCCCCGGGAT	0.584											OREG0021329	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
DDX6	1656	broad.mit.edu	37	11	118630686	118630686	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:118630685_118630685GT>G	uc001pub.2	-	7	1171	c.810_810AC>C	c.(808-810)aacfs	p.N270fs	DDX6_uc001pua.2_5'Flank|DDX6_uc001puc.2_Frame_Shift_Del_p.N270fs	NM_004397	NP_004388	P26196	DDX6_HUMAN	Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 (DDX6), mRNA.	270	Helicase ATP-binding.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	RNA-induced silencing complex|cytoplasmic mRNA processing body|cytosol|stress granule	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|protein binding			NS(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(4)|lung(1)|ovary(1)|prostate(1)	13	all_hematologic(175;0.0839)	Renal(330;0.0183)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)|Hepatocellular(160;0.0893)|Breast(348;0.0979)|all_hematologic(192;0.103)		OV - Ovarian serous cystadenocarcinoma(223;3.39e-06)|BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Colorectal(284;0.0377)		AAATCTGCCTGTTTTTAGGTA	0.378			T	IGH@	B-NHL							
BCL9L	283149	broad.mit.edu	37	11	118769574	118769574	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:118769573_118769573TG>T	uc001pug.3	-	7	5016	c.4051_4051CA>A	c.(4051-4053)aagfs	p.K1351fs	BCL9L_uc009zal.3_Frame_Shift_Del_p.K1346fs	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	Homo sapiens B-cell CLL/lymphoma 9-like (BCL9L), mRNA.	1351	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			NS(3)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(13)|lung(20)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|urinary_tract(2)	56	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		GGCTGAGCCTTGGGGGGCTGG	0.617												
BCL9L	283149	broad.mit.edu	37	11	118772974	118772974	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:118772973_118772973CG>C	uc001pug.3	-	5	2444	c.1479_1479CG>G	c.(1477-1479)ccgfs	p.P493fs	BCL9L_uc009zal.3_Frame_Shift_Del_p.P488fs	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	Homo sapiens B-cell CLL/lymphoma 9-like (BCL9L), mRNA.	493	Necessary for interaction with CTNNB1 (By similarity).|Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			NS(3)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(13)|lung(20)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|urinary_tract(2)	56	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		TGTCCCCACCCGGGGGGTGCC	0.622												
CCDC153	283152	broad.mit.edu	37	11	119061043	119061043	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:119061042_119061042AG>A	uc010rze.2	-	6	814	c.600_600CT>T	c.(598-600)cctfs	p.P200fs		NM_001145018	NP_001138490	Q494R4	CC153_HUMAN	Homo sapiens coiled-coil domain containing 153 (CCDC153), mRNA.	200										lung(3)|stomach(1)	4						TCAAAGATCCAGGGGGGGTGA	0.572												
OR8D2	283160	broad.mit.edu	37	11	124189338	124189338	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:124189337_124189337CA>C	uc010sah.2	-	0	757	c.757_757TG>G	c.(757-759)gggfs	p.G253fs		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	Homo sapiens olfactory receptor, family 8, subfamily D, member 2 (OR8D2), mRNA.	253					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(14)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)	25		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		GTTATAGACCCAAAAAAGATG	0.428												
TMEM218	219854	broad.mit.edu	37	11	124967560	124967562	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr11:124967559_124967561CAAG>C	uc001qbs.3	-	3	941_943	c.289_291CTTG>G	c.(289-291)ttg>G	p.L97del	TMEM218_uc010sax.2_In_Frame_Del_p.L97del|TMEM218_uc010saw.2_In_Frame_Del_p.L132del|TMEM218_uc001qbt.3_In_Frame_Del_p.L132del|TMEM218_uc010say.2_Non-coding_Transcript	NM_001080546	NP_001074015	A2RU14	TM218_HUMAN	Homo sapiens transmembrane protein 218 (TMEM218), mRNA.	97						integral to membrane				breast(1)|large_intestine(2)|lung(1)|prostate(1)	5						GGATTAAAACCAAGAAGAGGCCT	0.443												
SPSB2	84727	broad.mit.edu	37	12	6981956	6981956	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:6981955_6981955AG>A	uc001qrl.3	-	1	267	c.111_111CT>T	c.(109-111)cctfs	p.P37fs	SPSB2_uc001qrm.3_Frame_Shift_Del_p.P37fs|RRPL13L_uc009zff.3_5'Flank	NM_001146316	NP_116030	Q99619	SPSB2_HUMAN	Homo sapiens splA/ryanodine receptor domain and SOCS box containing 2 (SPSB2), transcript variant 2, mRNA.	37	B30.2/SPRY.				intracellular signal transduction	cytoplasm	protein binding			kidney(2)|lung(2)|upper_aerodigestive_tract(1)	5						CCAGGTCAGGAGGGGGTGCAG	0.657											OREG0021639	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
PIK3C2G	5288	broad.mit.edu	37	12	18641389	18641389	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:18641388_18641388TA>T	uc001rdt.3	+	17	2503	c.2387_2387TA>T	c.(2386-2388)ctafs	p.L796fs	PIK3C2G_uc010sia.2_Non-coding_Transcript|PIK3C2G_uc010sib.2_Frame_Shift_Del_p.L837fs|PIK3C2G_uc010sic.2_Frame_Shift_Del_p.L615fs	NM_004570	NP_004561	O75747	P3C2G_HUMAN	Homo sapiens phosphoinositide-3-kinase, class 2, gamma polypeptide (PIK3C2G), mRNA.	796					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			breast(5)|central_nervous_system(6)|endometrium(2)|kidney(4)|large_intestine(8)|lung(31)|ovary(2)|prostate(1)|skin(2)|stomach(4)|upper_aerodigestive_tract(1)	66		Hepatocellular(102;0.194)				TTCAGGCTGCTAAAAAATGCA	0.363												
KIF21A	55605	broad.mit.edu	37	12	39735929	39735929	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:39735928_39735928TA>T	uc001rly.3	-	13	2133	c.1713_splice	c.e13-1	p.S571_splice	KIF21A_uc001rlw.3_5'Flank|KIF21A_uc001rlx.3_Splice_Site_p.S558_splice|KIF21A_uc001rlz.3_Splice_Site_p.S558_splice|KIF21A_uc010skl.2_Splice_Site_p.S558_splice	NM_001173464	NP_001166935	Q7Z4S6	KI21A_HUMAN	Homo sapiens kinesin family member 21A (KIF21A), transcript variant 1, mRNA.	571					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			NS(1)|breast(1)|central_nervous_system(1)|cervix(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(14)|lung(41)|ovary(5)|pancreas(1)|prostate(1)|skin(4)|stomach(1)|urinary_tract(2)	86		Lung NSC(34;0.179)|all_lung(34;0.213)				CCAGCCACACTAAAAAAAGGA	0.333												
PDZRN4	29951	broad.mit.edu	37	12	41967558	41967558	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:41967557_41967557CA>C	uc010skn.2	+	9	2984	c.2976_2976CA>C	c.(2974-2976)cacfs	p.H992fs	PDZRN4_uc001rmq.4_Frame_Shift_Del_p.H734fs|PDZRN4_uc009zjz.3_Frame_Shift_Del_p.H732fs|PDZRN4_uc001rmr.3_Frame_Shift_Del_p.H619fs	NM_001164595	NP_001158067	Q6ZMN7	PZRN4_HUMAN	Homo sapiens PDZ domain containing ring finger 4 (PDZRN4), transcript variant 1, mRNA.	992							ubiquitin-protein ligase activity|zinc ion binding			breast(3)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(23)|lung(29)|ovary(3)|pancreas(1)|prostate(2)|skin(4)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	77	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				AACTGAGTCACAAAAAGATGA	0.468												
PRICKLE1	144165	broad.mit.edu	37	12	42858973	42858974	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:42858972_42858973CAA>C	uc010skv.2	-	6	1150_1151	c.863_864TTG>G	c.(862-864)ttgfs	p.L288fs	PRICKLE1_uc001rnl.3_Frame_Shift_Del_p.L288fs|PRICKLE1_uc010skw.2_Frame_Shift_Del_p.L288fs|PRICKLE1_uc001rnm.3_Frame_Shift_Del_p.L288fs	NM_001144881	NP_694571	Q96MT3	PRIC1_HUMAN	Homo sapiens prickle homolog 1 (Drosophila) (PRICKLE1), transcript variant 2, mRNA.	288	LIM zinc-binding 3.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			NS(1)|breast(2)|endometrium(4)|kidney(2)|large_intestine(12)|liver(1)|lung(13)|ovary(3)|skin(5)|upper_aerodigestive_tract(3)|urinary_tract(1)	47	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		GACATCCCAACAAAGAGGCTTT	0.510												
PRKAG1	5571	broad.mit.edu	37	12	49399309	49399309	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:49399308_49399308CA>C	uc001rsy.3	-	3	293	c.187_187TG>G	c.(187-189)gctfs	p.A63fs	PRKAG1_uc010smd.2_Frame_Shift_Del_p.A31fs|PRKAG1_uc001rsz.3_Frame_Shift_Del_p.A63fs|PRKAG1_uc010sme.2_Frame_Shift_Del_p.A63fs	NM_002733	NP_001193639	P54619	AAKG1_HUMAN	Homo sapiens protein kinase, AMP-activated, gamma 1 non-catalytic subunit (PRKAG1), transcript variant 1, mRNA.	63	CBS 1.				cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|positive regulation of protein kinase activity|regulation of fatty acid oxidation|regulation of glycolysis|spermatogenesis	cytosol	cAMP-dependent protein kinase activity|cAMP-dependent protein kinase regulator activity|protein kinase binding			cervix(1)|endometrium(2)|kidney(2)|large_intestine(2)|lung(1)|upper_aerodigestive_tract(1)	9						GTCACCAAAGCAAAAAAAGCT	0.408												
KRT75	9119	broad.mit.edu	37	12	52822530	52822533	+	Splice_Site	DEL	GAGA	GAGA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:52822529_52822532TGAGA>T	uc001saj.2	-	6	1058	c.1036_splice	c.e6-1	p.Y346_splice		NM_004693	NP_004684	O95678	K2C75_HUMAN	Homo sapiens keratin 75 (KRT75), mRNA.	346	Coil 2.|Rod.					keratin filament	structural molecule activity			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(13)|lung(10)|prostate(1)|skin(1)	28				BRCA - Breast invasive adenocarcinoma(357;0.192)		CTCCTCGTACTGAGAGAACCAGAG	0.554												
STAT2	6773	broad.mit.edu	37	12	56742817	56742817	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:56742816_56742816TG>T	uc001slc.3	-	16	1671	c.1468_1468CA>A	c.(1468-1470)aagfs	p.K490fs	STAT2_uc001slb.3_Frame_Shift_Del_p.K32fs|STAT2_uc001sld.3_Frame_Shift_Del_p.K486fs|STAT2_uc010sqn.2_3'UTR	NM_005419	NP_005410	P52630	STAT2_HUMAN	Homo sapiens signal transducer and activator of transcription 2, 113kDa (STAT2), transcript variant 1, mRNA.	490					JAK-STAT cascade|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	cytosol|nucleoplasm|plasma membrane	DNA binding|calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			NS(1)|endometrium(2)|kidney(5)|large_intestine(7)|liver(2)|lung(10)|ovary(1)|skin(3)	31						CAGGGGGCCTTGGGGGGGTTG	0.592												
LRP1	4035	broad.mit.edu	37	12	57556256	57556256	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57556255_57556255GC>G	uc001snd.3	+	13	2824	c.2358_2358GC>G	c.(2356-2358)cggfs	p.R786fs		NM_002332	NP_002323	Q07954	LRP1_HUMAN	Homo sapiens low density lipoprotein receptor-related protein 1 (LRP1), mRNA.	786					aorta morphogenesis|apoptotic cell clearance|negative regulation of Wnt receptor signaling pathway|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			NS(1)|breast(9)|central_nervous_system(3)|cervix(3)|endometrium(33)|haematopoietic_and_lymphoid_tissue(4)|kidney(10)|large_intestine(26)|lung(58)|ovary(10)|pancreas(2)|prostate(11)|skin(7)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(5)	184				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GCAGTGAGCGGCCCCCCATCT	0.612												
LRP1	4035	broad.mit.edu	37	12	57572242	57572242	+	Frame_Shift_Del	DEL	G	G	-	rs139915490		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:57572241_57572241CG>C	uc001snd.3	+	26	4927	c.4461_4461CG>C	c.(4459-4461)tacfs	p.Y1487fs		NM_002332	NP_002323	Q07954	LRP1_HUMAN	Homo sapiens low density lipoprotein receptor-related protein 1 (LRP1), mRNA.	1487					aorta morphogenesis|apoptotic cell clearance|negative regulation of Wnt receptor signaling pathway|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			NS(1)|breast(9)|central_nervous_system(3)|cervix(3)|endometrium(33)|haematopoietic_and_lymphoid_tissue(4)|kidney(10)|large_intestine(26)|lung(58)|ovary(10)|pancreas(2)|prostate(11)|skin(7)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(5)	184				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TGACGCTGTACGGGGGGGAGG	0.592												
TDG	6996	broad.mit.edu	37	12	104373688	104373689	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:104373687_104373688C>CA	uc001tkg.3	+	2	468_469	c.245_246C>CA	c.(244-246)tcafs	p.S82fs	TDG_uc010swh.1_Frame_Shift_Ins_p.S82fs|TDG_uc009zuk.3_Frame_Shift_Ins_p.S78fs|TDG_uc010swi.2_5'UTR|TDG_uc010swj.2_5'UTR	NM_003211	NP_003202	Q13569	TDG_HUMAN	Homo sapiens thymine-DNA glycosylase (TDG), mRNA.	82					depyrimidination|mismatch repair	nucleoplasm	damaged DNA binding|mismatched DNA binding|protein binding|pyrimidine-specific mismatch base pair DNA N-glycosylase activity			large_intestine(2)|lung(14)|ovary(4)|skin(1)|stomach(2)|upper_aerodigestive_tract(1)	24				BRCA - Breast invasive adenocarcinoma(302;0.00114)		CCTGTTGAGTCAAAAAAATCTG	0.332								Base excision repair (BER), DNA glycosylases				
POLR3B	55703	broad.mit.edu	37	12	106773822	106773822	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:106773821_106773821GA>G	uc001tlp.3	+	8	849	c.627_627GA>G	c.(625-627)gagfs	p.E209fs	POLR3B_uc001tlq.3_Frame_Shift_Del_p.E151fs	NM_018082	NP_001154180	Q9NW08	RPC2_HUMAN	Homo sapiens polymerase (RNA) III (DNA directed) polypeptide B (POLR3B), transcript variant 1, mRNA.	209					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(3)|large_intestine(14)|lung(22)|ovary(1)|prostate(3)|skin(3)|urinary_tract(2)	57						CTACCCATGAGAAAAAAAGCA	0.333												
BTBD11	121551	broad.mit.edu	37	12	108008873	108008874	+	Frame_Shift_Ins	INS	-	-	C	rs76689600		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:108008872_108008873A>AC	uc001tmk.1	+	6	2455_2456	c.1934_1935A>AC	c.(1933-1935)cacfs	p.H645fs	BTBD11_uc009zut.1_Frame_Shift_Ins_p.H645fs|BTBD11_uc001tmj.3_Frame_Shift_Ins_p.H645fs|BTBD11_uc001tml.1_Frame_Shift_Ins_p.H182fs	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	Homo sapiens BTB (POZ) domain containing 11 (BTBD11), transcript variant a, mRNA.	645						integral to membrane	DNA binding			NS(1)|breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(13)|lung(18)|ovary(1)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	53						CCATCCGTCCACCCCGAGACCC	0.411												
KCTD10	83892	broad.mit.edu	37	12	109907348	109907349	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:109907347_109907348G>GC	uc001toj.1	-	1	1926_1927	c.213_214C>GC	c.(211-216)gggcgcfs	p.G71fs	KCTD10_uc009zvi.1_Frame_Shift_Ins_p.G60fs|KCTD10_uc001toi.1_Frame_Shift_Ins_p.G63fs|KCTD10_uc001tok.1_5'UTR	NM_031954	NP_114160	Q9H3F6	BACD3_HUMAN	Homo sapiens potassium channel tetramerisation domain containing 10 (KCTD10), mRNA.	63	BTB.				proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination	Cul3-RING ubiquitin ligase complex|cytoplasm|nucleus|voltage-gated potassium channel complex	voltage-gated potassium channel activity			endometrium(2)|kidney(1)|large_intestine(2)|lung(4)|prostate(1)	10						ACTTCCATGCGCCCGCTGAACA	0.559												
ALDH2	217	broad.mit.edu	37	12	112229927	112229927	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:112229926_112229926TG>T	uc001tst.3	+	7	953	c.857_857TG>T	c.(856-858)ctgfs	p.L286fs	ALDH2_uc010syi.2_Frame_Shift_Del_p.L239fs	NM_000690	NP_000681	P05091	ALDH2_HUMAN	Homo sapiens aldehyde dehydrogenase 2 family (mitochondrial) (ALDH2), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA.	286					carbohydrate metabolic process|ethanol oxidation|neurotransmitter biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	aldehyde dehydrogenase|aldehyde dehydrogenase (NAD) activity|electron carrier activity	p.K289fs*45(2)		NS(1)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(3)|liver(1)|lung(6)|ovary(2)|prostate(1)|skin(2)|stomach(1)	22					Disulfiram(DB00822)|Guanidine(DB00536)|NADH(DB00157)|Nitroglycerin(DB00727)	ACCTTGGAGCTGGGGGGGAAG	0.572			T	HMGA2	leiomyoma							
GCN1L1	10985	broad.mit.edu	37	12	120582814	120582814	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:120582813_120582813TC>T	uc001txo.3	-	39	5082	c.5069_5069GA>A	c.(5068-5070)gagfs	p.E1690fs		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	Homo sapiens GCN1 general control of amino-acid synthesis 1-like 1 (yeast) (GCN1L1), mRNA.	1690					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			NS(2)|breast(2)|cervix(2)|endometrium(12)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(13)|liver(1)|lung(36)|ovary(4)|prostate(7)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(2)	94	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AAAGCACGACTCCCCCATGCC	0.582												
VPS37B	79720	broad.mit.edu	37	12	123351987	123351987	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:123351986_123351986TG>T	uc001udl.3	-	3	638	c.535_535CA>A	c.(535-537)aggfs	p.R179fs		NM_024667	NP_078943	Q9H9H4	VP37B_HUMAN	Homo sapiens vacuolar protein sorting 37 homolog B (S. cerevisiae) (VPS37B), mRNA.	179	Pro-rich.				cellular membrane organization|endosome transport|protein transport	late endosome membrane				breast(1)|central_nervous_system(1)|large_intestine(1)|skin(1)|urinary_tract(1)	5	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.08e-05)|Epithelial(86;0.000197)|BRCA - Breast invasive adenocarcinoma(302;0.205)		TCGGGCAGCCTGGGGGGCAGC	0.687												
PXMP2	5827	broad.mit.edu	37	12	133277870	133277870	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:133277869_133277869AG>A	uc001ukt.3	+	3	498	c.433_433AG>A	c.(433-435)aggfs	p.R145fs	PGAM5_uc010tbr.2_Non-coding_Transcript	NM_018663	NP_061133	Q9NR77	PXMP2_HUMAN	Homo sapiens peroxisomal membrane protein 2, 22kDa (PXMP2), mRNA.	145						integral to membrane|peroxisomal membrane	protein binding			large_intestine(1)|liver(2)|lung(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.86e-08)|Epithelial(86;2.47e-07)|all cancers(50;6.85e-06)		CGCCAAGATGAGGGGGGGCTT	0.612												
CHFR	55743	broad.mit.edu	37	12	133448913	133448914	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr12:133448912_133448913T>TC	uc001ulf.2	-	3	385_386	c.301_302A>GA	c.(301-303)gatfs	p.D101fs	CHFR_uc001ulc.1_Non-coding_Transcript|CHFR_uc001uld.2_Frame_Shift_Ins_p.D101fs|CHFR_uc001ule.2_Frame_Shift_Ins_p.D101fs|CHFR_uc010tbs.1_Frame_Shift_Ins_p.D101fs|CHFR_uc010tbt.1_Frame_Shift_Ins_p.D101fs	NM_001161344	NP_001154816	Q96EP1	CHFR_HUMAN	Homo sapiens checkpoint with forkhead and ring finger domains (CHFR), transcript variant 1, mRNA.	101					cell division|mitosis|mitotic cell cycle checkpoint|modification-dependent protein catabolic process|protein polyubiquitination	PML body	nucleotide binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(4)|lung(10)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	26	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00552)|all_epithelial(31;0.226)		OV - Ovarian serous cystadenocarcinoma(86;2.59e-08)|Epithelial(86;6.38e-07)|all cancers(50;1.56e-05)		GTAGATGACATCCCCAGTCTGT	0.480												
TPTE2	93492	broad.mit.edu	37	13	20041394	20041395	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:20041393_20041394C>CA	uc001umd.3	-	7	694_695	c.483_484G>TG	c.(481-486)tttgacfs	p.F161fs	TPTE2_uc009zzk.3_Intron|TPTE2_uc009zzl.3_Intron|TPTE2_uc001ume.3_Intron|TPTE2_uc009zzm.3_Intron|TPTE2_uc010tcm.2_Non-coding_Transcript	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	Homo sapiens transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 (TPTE2), transcript variant 3, mRNA.	161						endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			NS(2)|breast(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(3)|kidney(7)|large_intestine(8)|lung(21)|pancreas(1)|prostate(8)|skin(6)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	65		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		AACTTAATGTCAAAAAAAATGT	0.302												
ZMYM5	9205	broad.mit.edu	37	13	20399239	20399240	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:20399238_20399239C>CT	uc010tcn.1	-	7	1653_1654	c.1388_1389G>AG	c.(1387-1389)aagfs	p.K463fs	ZMYM5_uc001umm.1_Frame_Shift_Ins_p.K287fs	NM_001142684	NP_001136156	Q9UJ78	ZMYM5_HUMAN	Homo sapiens zinc finger, MYM-type 5 (ZMYM5), transcript variant 3, mRNA.	463						nucleus	zinc ion binding			kidney(1)|large_intestine(5)|lung(9)	15		all_cancers(29;2.96e-22)|all_epithelial(30;3.76e-20)|all_lung(29;4.38e-20)|Lung NSC(5;5.8e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.61e-05)|Epithelial(112;4.89e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00171)|Lung(94;0.00942)|LUSC - Lung squamous cell carcinoma(192;0.0431)		aagtcttttcctttttttctgg	0.351												
EFHA1	221154	broad.mit.edu	37	13	22077129	22077129	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:22077128_22077128GA>G	uc001uof.3	-	8	938	c.870_870TC>C	c.(868-870)ttcfs	p.F290fs	EFHA1_uc010tct.2_Frame_Shift_Del_p.F80fs	NM_152726	NP_689939	Q8IYU8	EFHA1_HUMAN	Homo sapiens EF-hand domain family, member A1 (EFHA1), mRNA.	290							calcium ion binding			endometrium(1)|kidney(1)|large_intestine(5)|lung(3)|prostate(1)|skin(2)	13		all_cancers(29;1.24e-15)|all_epithelial(30;5.4e-14)|all_lung(29;2.04e-13)|Lung SC(185;0.0367)		all cancers(112;0.000171)|Epithelial(112;0.000398)|OV - Ovarian serous cystadenocarcinoma(117;0.00641)|Lung(94;0.189)		CAGTGTTAGTGAAAAAAAGTA	0.323												
FLT1	2321	broad.mit.edu	37	13	29012359	29012359	+	Splice_Site	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:29012358_29012358CT>C	uc001usb.3	-	4	798	c.513_splice	c.e4+1	p.K171_splice	FLT1_uc010aar.1_Splice_Site_p.K171_splice|FLT1_uc001usc.3_Splice_Site_p.K171_splice|FLT1_uc010tdp.1_Splice_Site_p.K171_splice	NM_002019	NP_002010	P17948	VGFR1_HUMAN	Homo sapiens fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) (FLT1), transcript variant 1, mRNA.	171	Ig-like C2-type 2.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	Golgi apparatus|extracellular space|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			NS(1)|breast(2)|central_nervous_system(5)|endometrium(8)|kidney(3)|large_intestine(20)|lung(55)|ovary(3)|prostate(1)|skin(12)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	115	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TCAAATTTACCTTTTTTAAAG	0.383												
AKAP11	11215	broad.mit.edu	37	13	42873774	42873774	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:42873773_42873773AT>A	uc001uys.2	+	7	1066	c.891_891AT>A	c.(889-891)acafs	p.T297fs		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	Homo sapiens A kinase (PRKA) anchor protein 11 (AKAP11), mRNA.	297	Ser-rich.				intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			breast(3)|central_nervous_system(4)|cervix(1)|endometrium(6)|kidney(3)|large_intestine(10)|liver(1)|lung(22)|ovary(1)|skin(3)|stomach(2)	56		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		TACAGAAAACATTTTTTTCGT	0.358												
NEK5	341676	broad.mit.edu	37	13	52676262	52676262	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:52676261_52676261TA>T	uc001vge.3	-	9	917	c.777_777TA>A	c.(775-777)ttafs	p.L259fs		NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	Homo sapiens NIMA (never in mitosis gene a)-related kinase 5 (NEK5), mRNA.	259	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			breast(5)|central_nervous_system(1)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(8)|lung(11)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	39		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		TAAGATTCTCTAAAAAGGGCC	0.428												
PCDH17	27253	broad.mit.edu	37	13	58208421	58208421	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:58208420_58208420GC>G	uc001vhq.1	+	0	2632	c.1740_1740GC>G	c.(1738-1740)gcgfs	p.A580fs	PCDH17_uc010aec.1_Frame_Shift_Del_p.A580fs	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	Homo sapiens protocadherin 17 (PCDH17), mRNA.	580	Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			breast(2)|central_nervous_system(2)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(30)|liver(2)|lung(54)|ovary(4)|pancreas(2)|prostate(5)|skin(3)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(2)	120		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		ATGACAACGCGCCAGTGATCG	0.637												
SLITRK1	114798	broad.mit.edu	37	13	84455509	84455509	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:84455508_84455508CT>C	uc001vlk.3	-	0	1021	c.135_135AG>G	c.(133-135)aagfs	p.K45fs		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	Homo sapiens SLIT and NTRK-like family, member 1 (SLITRK1), mRNA.	45	LRRNT.					integral to membrane		p.K45fs*64(1)		NS(2)|breast(1)|central_nervous_system(2)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(22)|liver(1)|lung(36)|ovary(4)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)	80	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TTGTGAAGCCCTTTTTTTCAC	0.463												
GPC6	10082	broad.mit.edu	37	13	94938708	94938708	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr13:94938707_94938707GA>G	uc001vlt.3	+	4	1614	c.982_982GA>G	c.(982-984)gaafs	p.E328fs	GPC6_uc010tig.1_Frame_Shift_Del_p.E328fs	NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	Homo sapiens glypican 6 (GPC6), mRNA.	328						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			NS(1)|breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(10)|lung(13)|skin(2)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	38	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				GAACATGCAAGAAAACAGCAT	0.418												
CHD8	57680	broad.mit.edu	37	14	21870578	21870579	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:21870577_21870578A>ATC	uc001war.2	-	17	3864_3865	c.3799_3800T>GAT	c.(3799-3801)atgfs	p.M1267fs	CHD8_uc001was.2_Frame_Shift_Ins_p.M988fs|CHD8_uc001wav.1_Frame_Shift_Ins_p.M430fs	NM_001170629	NP_001164100	Q9HCK8	CHD8_HUMAN	Homo sapiens chromodomain helicase DNA binding protein 8 (CHD8), transcript variant 1, mRNA.	1267	Helicase C-terminal.				ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|beta-catenin binding|methylated histone residue binding|p53 binding			NS(2)|breast(1)|central_nervous_system(1)|cervix(4)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(8)|lung(33)|ovary(6)|prostate(7)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(2)	85	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		CTTATCAAACATCTCTCTCTCG	0.475												
TGM1	7051	broad.mit.edu	37	14	24729847	24729848	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:24729846_24729847G>GC	uc001wod.3	-	3	690_691	c.566_567C>GC	c.(565-567)ggcfs	p.G189fs	TGM1_uc010tog.2_Intron|TGM1_uc021rrn.1_5'Flank	NM_000359	NP_000350	P22735	TGM1_HUMAN	Homo sapiens transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) (TGM1), mRNA.	189					cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			breast(1)|central_nervous_system(3)|endometrium(3)|kidney(1)|large_intestine(5)|lung(7)|ovary(2)|prostate(2)	24				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	AGCCTCCACTGCCCCCCTTGCC	0.589												
STRN3	29966	broad.mit.edu	37	14	31364949	31364949	+	Frame_Shift_Del	DEL	T	T	-	rs114922597	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:31364948_31364948AT>A	uc001wqu.2	-	16	2360	c.2144_2144AT>T	c.(2143-2145)atgfs	p.M715fs	STRN3_uc001wqv.2_Frame_Shift_Del_p.M631fs|STRN3_uc010tpj.1_Non-coding_Transcript	NM_001083893	NP_001077362	Q13033	STRN3_HUMAN	Homo sapiens striatin, calmodulin binding protein 3 (STRN3), transcript variant 1, mRNA.	715					negative regulation of estrogen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|response to estradiol stimulus	Golgi apparatus|cytoplasm|dendrite|neuronal cell body|nucleoplasm|nucleus|plasma membrane|protein complex	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding|sequence-specific DNA binding transcription factor activity			NS(1)|breast(1)|endometrium(2)|kidney(3)|large_intestine(2)|lung(7)|ovary(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	20	Hepatocellular(127;0.0877)|Breast(36;0.148)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)|BRCA - Breast invasive adenocarcinoma(188;0.0805)	GBM - Glioblastoma multiforme(265;0.0124)		AGAATGGATCATTTTACCTAA	0.333												
NPAS3	64067	broad.mit.edu	37	14	34243648	34243648	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:34243647_34243647TC>T	uc001wru.3	+	7	1021	c.957_957TC>T	c.(955-957)cctfs	p.P319fs	NPAS3_uc001wrs.3_Frame_Shift_Del_p.P306fs|NPAS3_uc001wrv.3_Frame_Shift_Del_p.P289fs|NPAS3_uc001wrt.3_Frame_Shift_Del_p.P287fs	NM_001164749	NP_001158221	Q8IXF0	NPAS3_HUMAN	Homo sapiens neuronal PAS domain protein 3 (NPAS3), transcript variant 1, mRNA.	319	PAS 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity	p.S319I(1)		breast(4)|endometrium(3)|kidney(1)|large_intestine(6)|liver(2)|lung(14)|ovary(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(1)	40	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		ATGCCTTGCCTCCCCCTACGA	0.493												
KIAA0391	9692	broad.mit.edu	37	14	35739731	35739731	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:35739730_35739730GT>G	uc001wsy.1	+	6	1908	c.1548_1548GT>G	c.(1546-1548)ctgfs	p.L516fs	KIAA0391_uc010tps.1_Frame_Shift_Del_p.L421fs|KIAA0391_uc001wsz.1_Frame_Shift_Del_p.L500fs|KIAA0391_uc001wta.3_Non-coding_Transcript|KIAA0391_uc001wtc.1_Frame_Shift_Del_p.L144fs	NM_014672	NP_055487	O15091	MRRP3_HUMAN	Homo sapiens KIAA0391 (KIAA0391), mRNA.	516					tRNA processing	mitochondrion				central_nervous_system(1)|endometrium(4)|large_intestine(2)|lung(5)|skin(1)|upper_aerodigestive_tract(1)	14	Breast(36;0.0545)|Hepatocellular(127;0.158)|Prostate(35;0.184)		Lung(238;2.93e-05)|LUAD - Lung adenocarcinoma(48;3.86e-05)|Epithelial(34;0.0114)|all cancers(34;0.0277)	GBM - Glioblastoma multiforme(112;0.0593)		CCCAACGCCTGTTTTTTAAGT	0.468												
TXNDC16	57544	broad.mit.edu	37	14	52907344	52907345	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:52907343_52907344C>CT	uc001wzs.3	-	18	2390_2391	c.1941_1942G>AG	c.(1939-1944)aaagcafs	p.K647fs	TXNDC16_uc010tqu.2_Frame_Shift_Ins_p.K642fs|TXNDC16_uc010aoe.3_Non-coding_Transcript	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	Homo sapiens thioredoxin domain containing 16 (TXNDC16), transcript variant 1, mRNA.	647					cell redox homeostasis	extracellular region				breast(1)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(2)|lung(10)|prostate(3)|skin(1)	21	Breast(41;0.0716)					GTCAATATTGCTTTTTTATACT	0.332												
GNPNAT1	64841	broad.mit.edu	37	14	53250196	53250196	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:53250195_53250195TA>T	uc001xab.3	-	2	418	c.163_163TA>A	c.(163-165)aagfs	p.K55fs		NM_198066	NP_932332	Q96EK6	GNA1_HUMAN	Homo sapiens glucosamine-phosphate N-acetyltransferase 1 (GNPNAT1), mRNA.	55	N-acetyltransferase.				UDP-N-acetylglucosamine biosynthetic process|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|cytosol|endosome membrane	glucosamine 6-phosphate N-acetyltransferase activity			liver(1)|lung(1)|prostate(1)|skin(1)	4	Breast(41;0.176)					CCCAATACCTTAAAAAAACCT	0.348												
KIAA0586	9786	broad.mit.edu	37	14	59014534	59014534	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:59014533_59014533GC>G	uc010trr.2	+	33	5018	c.4774_4774GC>G	c.(4774-4776)gccfs	p.A1592fs	KIAA0586_uc001xdu.4_Frame_Shift_Del_p.M1495fs|KIAA0586_uc010trs.2_Frame_Shift_Del_p.M1425fs|KIAA0586_uc001xdt.4_Frame_Shift_Del_p.M1466fs|KIAA0586_uc001xdv.4_Frame_Shift_Del_p.M1434fs	NM_001244189	NP_001231118	E9PGW8	E9PGW8_HUMAN	Homo sapiens KIAA0586 (KIAA0586), transcript variant 1, mRNA.	0										endometrium(4)|kidney(6)|large_intestine(8)|lung(12)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	34						CTTCACAGATGCCCCCTGCCA	0.522												
SLC38A6	145389	broad.mit.edu	37	14	61509874	61509874	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:61509873_61509873TA>T	uc001xfh.2	+	8	797	c.633_633TA>T	c.(631-633)attfs	p.I211fs	SLC38A6_uc001xfg.2_Frame_Shift_Del_p.I211fs|SLC38A6_uc001xfi.3_Non-coding_Transcript|SLC38A6_uc001xfj.1_Non-coding_Transcript|SLC38A6_uc001xfk.3_Non-coding_Transcript|SLC38A6_uc010trz.2_Frame_Shift_Del_p.I188fs	NM_001172702	NP_001166173	Q8IZM9	S38A6_HUMAN	Homo sapiens solute carrier family 38, member 6 (SLC38A6), transcript variant 1, mRNA.	211					amino acid transport|sodium ion transport	integral to membrane				central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|liver(2)|lung(5)|ovary(1)|skin(3)|stomach(1)|urinary_tract(1)	21				OV - Ovarian serous cystadenocarcinoma(108;0.0981)		AGGTAATAATTAAAAAATGGT	0.264												
FUT8	2530	broad.mit.edu	37	14	66135985	66135985	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:66135984_66135984CA>C	uc001xin.3	+	6	2348	c.621_621CA>C	c.(619-621)gccfs	p.A207fs	FUT8_uc001xio.3_Frame_Shift_Del_p.A207fs|FUT8_uc010tsp.2_Frame_Shift_Del_p.A44fs|FUT8_uc001xir.4_Non-coding_Transcript|FUT8_uc001xip.3_Frame_Shift_Del_p.A207fs|FUT8_uc001xiq.3_Frame_Shift_Del_p.A78fs|FUT8_uc021ruy.1_Frame_Shift_Del_p.A78fs	NM_178155	NP_004471	Q9BYC5	FUT8_HUMAN	Homo sapiens fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (FUT8), transcript variant 1, mRNA.	207					L-fucose catabolic process|N-glycan processing|in utero embryonic development|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|protein glycosylation in Golgi	Golgi cisterna membrane|integral to membrane	SH3 domain binding|glycoprotein 6-alpha-L-fucosyltransferase activity			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(12)|ovary(1)|prostate(2)|stomach(1)|upper_aerodigestive_tract(2)	22				all cancers(60;0.00109)|OV - Ovarian serous cystadenocarcinoma(108;0.00242)|BRCA - Breast invasive adenocarcinoma(234;0.0114)		GCAGCAAAGCCAAAAAGCTGG	0.418												
SIPA1L1	26037	broad.mit.edu	37	14	72172041	72172044	+	Frame_Shift_Del	DEL	CAAA	CAAA	-	rs138870993		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:72172040_72172043CCAAA>C	uc001xms.3	+	13	4172_4175	c.3811_3814CCAAA>C	c.(3811-3816)ccaaacfs	p.P1271fs	SIPA1L1_uc001xmt.3_Frame_Shift_Del_p.P1250fs|SIPA1L1_uc001xmu.3_Frame_Shift_Del_p.P1250fs|SIPA1L1_uc001xmv.3_Frame_Shift_Del_p.P1271fs|SIPA1L1_uc010ttm.2_Frame_Shift_Del_p.P725fs	NM_015556	NP_056371	O43166	SI1L1_HUMAN	Homo sapiens signal-induced proliferation-associated 1 like 1 (SIPA1L1), mRNA.	1271					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			NS(1)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(11)|kidney(1)|large_intestine(22)|liver(2)|lung(25)|ovary(3)|prostate(3)|skin(3)|stomach(1)	78				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		TCATTTGTCTCCAAACAAACAAGG	0.451												
YLPM1	56252	broad.mit.edu	37	14	75276389	75276390	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:75276388_75276389A>AC	uc001xqj.4	+	6	4951_4952	c.4827_4828A>AC	c.(4825-4830)ccacccfs	p.P1609fs	YLPM1_uc001xql.4_Non-coding_Transcript|YLPM1_uc001xqm.1_Frame_Shift_Ins_p.P92fs	NM_019589	NP_062535	P49750	YLPM1_HUMAN	Homo sapiens YLP motif containing 1 (YLPM1), mRNA.	1414					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				breast(4)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(12)|lung(24)|ovary(3)|pancreas(1)|prostate(1)|skin(1)|urinary_tract(1)	62			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		CAGTATTACCACCCCCACCTGT	0.470												
SERPINA1	5265	broad.mit.edu	37	14	94849556	94849557	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:94849555_94849556C>CA	uc001ycy.4	-	3	573_574	c.19_20G>TG	c.(19-21)tggfs	p.W7fs	SERPINA1_uc001ycw.4_Non-coding_Transcript|SERPINA1_uc001ycx.4_Frame_Shift_Ins_p.W7fs|SERPINA1_uc010auy.3_Frame_Shift_Ins_p.W7fs|SERPINA1_uc001ycz.4_Frame_Shift_Ins_p.W7fs|SERPINA1_uc010auz.3_Frame_Shift_Ins_p.W7fs|SERPINA1_uc010ava.3_Frame_Shift_Ins_p.W7fs|SERPINA1_uc001ydb.4_Frame_Shift_Ins_p.W7fs|SERPINA1_uc010avb.3_Frame_Shift_Ins_p.W7fs|SERPINA1_uc001ydc.4_Frame_Shift_Ins_p.W7fs|SERPINA1_uc010auw.3_Frame_Shift_Ins_p.W7fs|SERPINA1_uc010aux.3_Frame_Shift_Ins_p.W7fs|SERPINA1_uc001yda.1_Frame_Shift_Ins_p.W7fs	NM_001002236	NP_001121179	P01009	A1AT_HUMAN	Homo sapiens serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 (SERPINA1), transcript variant 2, mRNA.	7					acute-phase response|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen|proteinaceous extracellular matrix	protease binding|serine-type endopeptidase inhibitor activity			breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(5)|skin(6)|stomach(1)	24		all_cancers(154;0.0649)|all_epithelial(191;0.223)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)	Alpha-1-proteinase inhibitor(DB00058)	GAGGATGCCCCACGAGACAGAA	0.609												
PPP1R13B	23368	broad.mit.edu	37	14	104206432	104206432	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:104206431_104206431AG>A	uc001yof.1	-	11	2605	c.2322_2322CT>T	c.(2320-2322)cctfs	p.P774fs	PPP1R13B_uc010awv.1_Non-coding_Transcript|PPP1R13B_uc001yog.1_Frame_Shift_Del_p.P641fs	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	Homo sapiens protein phosphatase 1, regulatory subunit 13B (PPP1R13B), mRNA.	774	Pro-rich.				apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			endometrium(6)|kidney(2)|large_intestine(7)|lung(16)|ovary(1)|upper_aerodigestive_tract(1)	33		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				TGGGCTGGGCAGGGGGGAGCT	0.597												
AHNAK2	113146	broad.mit.edu	37	14	105412200	105412200	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:105412199_105412199AG>A	uc010axc.1	-	6	9709	c.9589_9589CT>T	c.(9589-9591)tctfs	p.S3197fs	AHNAK2_uc021seo.1_Intron|AHNAK2_uc001ypx.2_Frame_Shift_Del_p.S3097fs	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	Homo sapiens AHNAK nucleoprotein 2 (AHNAK2), mRNA.	3197						nucleus				cervix(4)|endometrium(4)|large_intestine(3)|lung(14)|ovary(2)|prostate(2)|skin(1)|stomach(3)	33		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			AGTTGGGCAGAGGGGGGCTCA	0.632												
AHNAK2	113146	broad.mit.edu	37	14	105413478	105413478	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:105413477_105413477CG>C	uc010axc.1	-	6	8431	c.8311_8311CG>G	c.(8311-8313)gatfs	p.D2771fs	AHNAK2_uc021seo.1_Intron|AHNAK2_uc001ypx.2_Frame_Shift_Del_p.D2671fs	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	Homo sapiens AHNAK nucleoprotein 2 (AHNAK2), mRNA.	2771						nucleus				cervix(4)|endometrium(4)|large_intestine(3)|lung(14)|ovary(2)|prostate(2)|skin(1)|stomach(3)	33		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ATCTTCACATCGGGGGCTGTC	0.612												
AHNAK2	113146	broad.mit.edu	37	14	105414035	105414035	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr14:105414034_105414034TG>T	uc010axc.1	-	6	7874	c.7754_7754CA>A	c.(7753-7755)cagfs	p.Q2585fs	AHNAK2_uc021seo.1_Intron|AHNAK2_uc001ypx.2_Frame_Shift_Del_p.Q2485fs	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	Homo sapiens AHNAK nucleoprotein 2 (AHNAK2), mRNA.	2585						nucleus				cervix(4)|endometrium(4)|large_intestine(3)|lung(14)|ovary(2)|prostate(2)|skin(1)|stomach(3)	33		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GACATCTAGCTGGGGGCCCTT	0.627												
C15orf29	79768	broad.mit.edu	37	15	34444996	34444996	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:34444995_34444995GA>G	uc001zhp.3	-	3	594	c.434_434TC>C	c.(433-435)tctfs	p.S145fs	C15orf29_uc010ubz.2_Frame_Shift_Del_p.S49fs|C15orf29_uc010uca.1_Frame_Shift_Del_p.S145fs	NM_024713	NP_078989	Q9H079	CO029_HUMAN	Homo sapiens chromosome 15 open reading frame 29 (C15orf29), mRNA.	145						nucleolus				kidney(1)|large_intestine(1)|lung(1)|ovary(1)|prostate(1)	5		all_lung(180;1.86e-06)		all cancers(64;5.49e-18)|GBM - Glioblastoma multiforme(113;8.91e-07)|BRCA - Breast invasive adenocarcinoma(123;0.026)|Lung(196;0.229)		ACTTACCTCAGAAAAAAACCC	0.328												
UBR1	197131	broad.mit.edu	37	15	43350584	43350584	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:43350583_43350583TA>T	uc001zqq.3	-	9	1204	c.1138_1138TA>A	c.(1138-1140)atgfs	p.M380fs	UBR1_uc010udk.1_Frame_Shift_Del_p.M380fs	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	Homo sapiens ubiquitin protein ligase E3 component n-recognin 1 (UBR1), mRNA.	380					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			NS(2)|endometrium(2)|kidney(7)|large_intestine(12)|lung(25)|pancreas(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(1)	58		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		TCCATCTCCATAAAAAAACTG	0.333												
TP53BP1	7158	broad.mit.edu	37	15	43733757	43733757	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:43733756_43733756AT>A	uc001zrs.3	-	14	3199	c.3051_3051AT>T	c.(3049-3051)aatfs	p.N1017fs	TP53BP1_uc010udp.2_Frame_Shift_Del_p.N1017fs|TP53BP1_uc001zrq.4_Frame_Shift_Del_p.N1022fs|TP53BP1_uc001zrr.4_Frame_Shift_Del_p.N1022fs|TP53BP1_uc010udq.1_Frame_Shift_Del_p.N1022fs	NM_005657	NP_005648	Q12888	TP53B_HUMAN	Homo sapiens tumor protein p53 binding protein 1 (TP53BP1), transcript variant 3, mRNA.	1017					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity|p53 binding			breast(4)|endometrium(5)|kidney(7)|large_intestine(22)|lung(13)|ovary(4)|pancreas(2)|prostate(1)|skin(10)|upper_aerodigestive_tract(1)|urinary_tract(3)	72		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		CAGTAGATCCATTTTTTCTTT	0.393								Other conserved DNA damage response genes				
B2M	567	broad.mit.edu	37	15	45007737	45007755	+	Frame_Shift_Del	DEL	AATGGAGAGAGAATTGAAA	AATGGAGAGAGAATTGAAA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:45007736_45007754GAATGGAGAGAGAATTGAAA>G	uc001zuc.3	+	1	243_261	c.183_201GAATGGAGAGAGAATTGAAA>G	c.(181-201)aagaatggagagagaattgaafs	p.K61fs	B2M_uc010uek.1_Frame_Shift_Del_p.K61fs|B2M_uc010bdx.1_Frame_Shift_Del_p.K61fs	NM_004048	NP_004039	P61769	B2MG_HUMAN	Homo sapiens beta-2-microglobulin (B2M), mRNA.	61	Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	Golgi membrane|MHC class I protein complex|early endosome membrane	protein binding	p.K61_L74del(2)|p.N62T(2)|p.K61fs*7(1)|p.V69fs*34(1)		breast(2)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(30)|kidney(8)|large_intestine(6)|lung(6)|ovary(2)|skin(2)|urinary_tract(1)	59		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		ACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGC	0.420												
B2M	567	broad.mit.edu	37	15	45007825	45007825	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:45007824_45007824AC>A	uc001zuc.3	+	1	331	c.271_271AC>A	c.(271-273)accfs	p.T91fs	B2M_uc010uek.1_Frame_Shift_Del_p.T91fs|B2M_uc010bdx.1_Intron	NM_004048	NP_004039	P61769	B2MG_HUMAN	Homo sapiens beta-2-microglobulin (B2M), mRNA.	91	Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	Golgi membrane|MHC class I protein complex|early endosome membrane	protein binding			breast(2)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(30)|kidney(8)|large_intestine(6)|lung(6)|ovary(2)|skin(2)|urinary_tract(1)	59		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		CACTGAATTCACCCCCACTGA	0.418												
SLC12A1	6557	broad.mit.edu	37	15	48527143	48527144	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:48527142_48527143A>AT	uc001zwn.4	+	8	1372_1373	c.1156_1157A>AT	c.(1156-1158)attfs	p.I386fs	SLC12A1_uc010uew.1_Frame_Shift_Ins_p.I192fs|SLC12A1_uc010bem.3_Frame_Shift_Ins_p.I386fs|SLC12A1_uc010uex.2_Frame_Shift_Ins_p.I386fs|SLC12A1_uc001zwq.4_Frame_Shift_Ins_p.I157fs|SLC12A1_uc001zwr.4_Frame_Shift_Ins_p.I113fs	NM_000338	NP_000329	Q13621	S12A1_HUMAN	Homo sapiens solute carrier family 12 (sodium/potassium/chloride transporters), member 1 (SLC12A1), transcript variant 1, mRNA.	386					potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			NS(2)|breast(3)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(14)|lung(30)|ovary(1)|prostate(2)|skin(1)	59		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	TGTCTTTGCCATTTTTTTCCCA	0.431												
RNF111	54778	broad.mit.edu	37	15	59323672	59323673	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:59323671_59323672T>TA	uc002afv.3	+	1	929_930	c.650_651T>TA	c.(649-651)gtafs	p.V217fs	RNF111_uc002afs.3_Frame_Shift_Ins_p.V217fs|RNF111_uc002aft.3_Frame_Shift_Ins_p.V217fs|RNF111_uc002afu.3_Frame_Shift_Ins_p.V217fs|RNF111_uc002afw.3_Frame_Shift_Ins_p.V217fs	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	Homo sapiens ring finger protein 111 (RNF111), mRNA.	217					multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			breast(2)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(9)|lung(11)|ovary(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	35				all cancers(107;0.194)		AAGAGATTTGTAAAAAATAATT	0.406												
USP3	9960	broad.mit.edu	37	15	63845976	63845977	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:63845975_63845976GAA>G	uc002amf.3	+	3	475_476	c.346_347GAA>G	c.(346-348)gaafs	p.E116fs	USP3_uc010uii.1_Non-coding_Transcript|USP3_uc002amg.3_Frame_Shift_Del_p.E31fs|USP3_uc002amh.3_Frame_Shift_Del_p.E94fs|USP3_uc010uij.2_Frame_Shift_Del_p.E72fs|USP3_uc010uik.2_Intron|USP3_uc010bgs.3_Frame_Shift_Del_p.E99fs|USP3_uc002ami.3_5'UTR	NM_006537	NP_006528	Q9Y6I4	UBP3_HUMAN	Homo sapiens ubiquitin specific peptidase 3 (USP3), mRNA.	116					DNA repair|histone deubiquitination|mitotic cell cycle|regulation of protein stability|ubiquitin-dependent protein catabolic process	nuclear chromatin	histone binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			endometrium(3)|large_intestine(7)|lung(4)	14				GBM - Glioblastoma multiforme(80;0.0187)		GAAAGTCAGAGAACACTTACAG	0.386												
NOX5	79400	broad.mit.edu	37	15	69331226	69331226	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:69331225_69331225CT>C	uc002ars.2	+	8	1441	c.1400_1400CT>C	c.(1399-1401)cctfs	p.P467fs	MIR548H4_uc021spl.1_Intron|NOX5_uc002arq.2_Frame_Shift_Del_p.P421fs|NOX5_uc002arp.2_Frame_Shift_Del_p.P449fs|NOX5_uc010bid.2_Frame_Shift_Del_p.P432fs|NOX5_uc010bie.2_Frame_Shift_Del_p.P267fs|NOX5_uc002arr.2_Frame_Shift_Del_p.P439fs|NOX5_uc010bif.2_Intron	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	Homo sapiens NADPH oxidase, EF-hand calcium binding domain 5 (NOX5), transcript variant 1, mRNA.	467	C-terminal catalytic region.|FAD-binding FR-type.				angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|integral to membrane	NADP binding|calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|superoxide-generating NADPH oxidase activity			breast(3)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|liver(2)|lung(18)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	35						AAGCGGCCCCCTTTTTTTCAC	0.542												
ABHD2	11057	broad.mit.edu	37	15	89694928	89694928	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr15:89694927_89694927TG>T	uc002bnj.2	+	7	1132	c.214_214TG>T	c.(214-216)tggfs	p.W72fs	ABHD2_uc002bnk.2_Frame_Shift_Del_p.W72fs	NM_007011	NP_690888	P08910	ABHD2_HUMAN	Homo sapiens abhydrolase domain containing 2 (ABHD2), transcript variant 1, mRNA.	72						integral to membrane	carboxylesterase activity			NS(1)|breast(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(7)|ovary(2)|prostate(2)|soft_tissue(1)	23	Lung NSC(78;0.0472)|all_lung(78;0.089)					ACCGTTGATCTGGGGGAAAAG	0.448												
PPL	5493	broad.mit.edu	37	16	4935386	4935388	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:4935385_4935387GCTC>G	uc002cyd.1	-	21	3359_3361	c.3269_3271GAGC>C	c.(3268-3273)gagctg>gCtg	p.1090_1091EL>A		NM_002705	NP_002696	O60437	PEPL_HUMAN	Homo sapiens periplakin (PPL), mRNA.	1090					keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			breast(6)|central_nervous_system(1)|endometrium(11)|kidney(5)|large_intestine(12)|lung(12)|ovary(4)|prostate(5)|skin(3)|stomach(1)|urinary_tract(2)	62						AGGAAGCTCAGCTCCTCCTCCTG	0.616												
TMC5	79838	broad.mit.edu	37	16	19475299	19475299	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:19475298_19475298CA>C	uc002dgc.4	+	7	2186	c.1437_1437CA>C	c.(1435-1437)gccfs	p.A479fs	TMC5_uc010vaq.2_Frame_Shift_Del_p.A479fs|TMC5_uc002dgb.4_Frame_Shift_Del_p.A479fs|TMC5_uc010var.2_Frame_Shift_Del_p.A479fs|TMC5_uc002dgd.1_Frame_Shift_Del_p.A233fs|TMC5_uc002dge.4_Frame_Shift_Del_p.A233fs|TMC5_uc002dgf.4_Frame_Shift_Del_p.A162fs|TMC5_uc002dgg.4_Frame_Shift_Del_p.A120fs	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	Homo sapiens transmembrane channel-like 5 (TMC5), transcript variant 1, mRNA.	479						integral to membrane				NS(1)|breast(1)|central_nervous_system(1)|endometrium(5)|kidney(1)|large_intestine(3)|liver(2)|lung(12)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)	31						TTACCGTGGCCAAAAAGAACA	0.468												
EEF2K	29904	broad.mit.edu	37	16	22269862	22269862	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:22269861_22269861GC>G	uc002dki.3	+	9	1561	c.1076_1076GC>G	c.(1075-1077)agcfs	p.S359fs	EEF2K_uc002dkh.3_Non-coding_Transcript	NM_013302	NP_037434	O00418	EF2K_HUMAN	Homo sapiens eukaryotic elongation factor-2 kinase (EEF2K), mRNA.	359					insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			breast(1)|central_nervous_system(1)|endometrium(8)|large_intestine(2)|lung(13)|ovary(1)|prostate(1)|skin(2)	29				GBM - Glioblastoma multiforme(48;0.0223)		AAATGTGGGAGCCCCCAAGTA	0.532												
TNRC6A	27327	broad.mit.edu	37	16	24802366	24802366	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:24802365_24802365AG>A	uc002dmm.3	+	5	2516	c.2402_2402AG>A	c.(2401-2403)cagfs	p.Q801fs	TNRC6A_uc010bxs.3_Frame_Shift_Del_p.Q548fs|TNRC6A_uc010vcc.1_Frame_Shift_Del_p.Q548fs|TNRC6A_uc002dmn.3_Frame_Shift_Del_p.Q548fs|TNRC6A_uc002dmo.3_Frame_Shift_Del_p.Q548fs	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	Homo sapiens trinucleotide repeat containing 6A (TNRC6A), mRNA.	801	Sufficient for interaction with EIF2C1 and EIF2C4.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	RNA binding|nucleotide binding			breast(1)|cervix(1)|endometrium(13)|kidney(5)|large_intestine(13)|liver(1)|lung(20)|ovary(3)|skin(2)|soft_tissue(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	64				GBM - Glioblastoma multiforme(48;0.0394)		TCAAACTGCCAGGGGGGGTGG	0.512												
ITGAL	3683	broad.mit.edu	37	16	30528333	30528334	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:30528332_30528333C>CA	uc002dyi.4	+	25	3077_3078	c.2901_2902C>CA	c.(2899-2904)cccaccfs	p.P967fs	ITGAL_uc002dyj.4_Frame_Shift_Ins_p.P883fs|ITGAL_uc010vev.2_Frame_Shift_Ins_p.P201fs	NM_002209	NP_002200	P20701	ITAL_HUMAN	Homo sapiens integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) (ITGAL), transcript variant 1, mRNA.	967					T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	cell adhesion molecule binding|receptor activity	p.P967P(2)		breast(1)|central_nervous_system(3)|cervix(1)|endometrium(10)|kidney(4)|large_intestine(12)|lung(32)|ovary(3)|prostate(4)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	76					Efalizumab(DB00095)	ACAACATACCCACCCTGGAGGC	0.639												
SETD1A	9739	broad.mit.edu	37	16	30975497	30975497	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:30975496_30975496AC>A	uc002ead.1	+	5	1407	c.721_721AC>A	c.(721-723)accfs	p.T241fs	SETD1A_uc002eae.1_Frame_Shift_Del_p.T241fs	NM_014712	NP_055527	O15047	SET1A_HUMAN	Homo sapiens SET domain containing 1A (SETD1A), mRNA.	241					regulation of transcription, DNA-dependent|transcription, DNA-dependent	Set1C/COMPASS complex|chromosome|nuclear speck	RNA binding|histone-lysine N-methyltransferase activity|nucleotide binding|protein binding			NS(2)|breast(2)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(9)|lung(21)|ovary(3)|prostate(2)|skin(4)|upper_aerodigestive_tract(4)|urinary_tract(1)	59						TGGCAACGGCACCCCCTGCTC	0.632												
CDH8	1006	broad.mit.edu	37	16	61851550	61851550	+	Frame_Shift_Del	DEL	C	C	-	rs80346989		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:61851549_61851549GC>G	uc002eog.2	-	6	2066	c.1111_1111GC>C	c.(1111-1113)cccfs	p.P371fs	CDH8_uc002eoh.3_Frame_Shift_Del_p.P140fs	NM_001796	NP_001787	P55286	CADH8_HUMAN	Homo sapiens cadherin 8, type 2 (CDH8), mRNA.	371	Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			biliary_tract(1)|breast(3)|cervix(1)|endometrium(7)|kidney(6)|large_intestine(22)|liver(2)|lung(49)|ovary(6)|pancreas(2)|prostate(5)|skin(4)|urinary_tract(4)	112		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TCTTTAAAGGGCCCCCTGCCA	0.473												
ZFHX3	463	broad.mit.edu	37	16	72829585	72829585	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:72829584_72829584AT>A	uc002fck.3	-	8	7670	c.6997_6997AT>T	c.(6997-6999)tgtfs	p.C2333fs	ZFHX3_uc002fcl.3_Frame_Shift_Del_p.C1419fs	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	Homo sapiens zinc finger homeobox 3 (ZFHX3), transcript variant A, mRNA.	2333					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			NS(3)|breast(7)|cervix(2)|endometrium(18)|haematopoietic_and_lymphoid_tissue(5)|kidney(8)|large_intestine(22)|liver(1)|lung(46)|ovary(5)|pancreas(1)|prostate(15)|skin(6)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(11)	153		Ovarian(137;0.13)				ACCAGGCTACATTTTTTGCAC	0.458												
ZFHX3	463	broad.mit.edu	37	16	72830903	72830904	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:72830902_72830903CCT>C	uc002fck.3	-	8	6351_6352	c.5678_5679AGG>G	c.(5677-5679)aggfs	p.R1893fs	ZFHX3_uc002fcl.3_Frame_Shift_Del_p.R979fs	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	Homo sapiens zinc finger homeobox 3 (ZFHX3), transcript variant A, mRNA.	1893					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			NS(3)|breast(7)|cervix(2)|endometrium(18)|haematopoietic_and_lymphoid_tissue(5)|kidney(8)|large_intestine(22)|liver(1)|lung(46)|ovary(5)|pancreas(1)|prostate(15)|skin(6)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(11)	153		Ovarian(137;0.13)				CGGCGCTGTCCCTCTCTCTCTG	0.540												
FA2H	79152	broad.mit.edu	37	16	74752943	74752943	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:74752942_74752942TG>T	uc002fde.2	-	4	806	c.730_730CA>A	c.(730-732)agcfs	p.S244fs	FA2H_uc002fdd.2_5'Flank|FA2H_uc010vmy.2_Non-coding_Transcript	NM_024306	NP_077282	Q7L5A8	FA2H_HUMAN	Homo sapiens fatty acid 2-hydroxylase (FA2H), mRNA.	244					cell death|electron transport chain|fatty acid biosynthetic process|sphingolipid metabolic process|transport	endoplasmic reticulum membrane|integral to membrane|microsome	heme binding|oxidoreductase activity			endometrium(2)|large_intestine(4)|lung(3)|skin(1)	10						TAGCTGTCGCTGGGGGGCTTC	0.617												
ADAT1	23536	broad.mit.edu	37	16	75651057	75651057	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:75651056_75651056GA>G	uc002feo.2	-	5	577	c.408_408TC>C	c.(406-408)ttcfs	p.F136fs	ADAT1_uc002fep.2_5'UTR	NM_012091	NP_036223	Q9BUB4	ADAT1_HUMAN	Homo sapiens adenosine deaminase, tRNA-specific 1 (ADAT1), transcript variant 1, mRNA.	136	A to I editase.				tRNA processing		RNA binding|metal ion binding|tRNA-specific adenosine deaminase activity			breast(1)|endometrium(4)|large_intestine(3)|lung(7)|ovary(1)|prostate(1)|skin(1)|stomach(1)	19						TATGGCTGGAGAAAAACACAA	0.398												
CENPN	55839	broad.mit.edu	37	16	81051433	81051434	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr16:81051432_81051433T>TA	uc002ffy.4	+	4	1137_1138	c.347_348T>TA	c.(346-348)ttafs	p.L116fs	CENPN_uc002ffw.4_Frame_Shift_Ins_p.L116fs|CENPN_uc002ffx.2_Frame_Shift_Ins_p.L116fs|CENPN_uc010vnl.1_Frame_Shift_Ins_p.L116fs|CENPN_uc010vnm.1_Frame_Shift_Ins_p.L96fs	NM_001100625	NP_001094095	Q96H22	CENPN_HUMAN	Homo sapiens centromere protein N (CENPN), transcript variant 1, mRNA.	116					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleoplasm				breast(1)|large_intestine(5)|lung(4)	10						CAGAGAGCATTAAAAAATGTAA	0.243												
PAFAH1B1	5048	broad.mit.edu	37	17	2579802	2579802	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:2579801_2579801TA>T	uc002fuw.4	+	8	1471	c.903_903TA>T	c.(901-903)actfs	p.T301fs	PAFAH1B1_uc010ckb.2_Intron|PAFAH1B1_uc010vqz.2_Intron	NM_000430	NP_000421	P43034	LIS1_HUMAN	Homo sapiens platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) (PAFAH1B1), mRNA.	301	Interaction with dynein and dynactin.				G2/M transition of mitotic cell cycle|acrosome assembly|actin cytoskeleton organization|adult locomotory behavior|brain morphogenesis|corpus callosum morphogenesis|establishment of mitotic spindle orientation|hippocampus development|layer formation in cerebral cortex|learning or memory|lipid catabolic process|microtubule organizing center organization|mitotic prometaphase|neuroblast proliferation|neuromuscular process controlling balance|neuron migration|platelet activating factor metabolic process|regulation of Rho GTPase activity|retrograde axon cargo transport|synaptic transmission|vesicle transport along microtubule	astral microtubule|cell cortex|centrosome|cytosol|kinetochore|motile primary cilium|nuclear membrane|perinuclear region of cytoplasm	dynactin binding|heparin binding|microtubule binding|phospholipase binding|phosphoprotein binding|protein homodimerization activity			endometrium(2)|kidney(1)|large_intestine(4)|liver(2)|lung(1)|skin(1)	11						TTCTGTAGACTAAAAAAAGTG	0.358												
CYB5D2	124936	broad.mit.edu	37	17	4053313	4053314	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:4053312_4053313TTA>T	uc002fxm.4	+	1	966_967	c.378_379TTA>T	c.(376-381)aattatfs	p.N126fs	CYB5D2_uc002fxl.4_Frame_Shift_Del_p.N14fs|CYB5D2_uc010cko.3_Frame_Shift_Del_p.N14fs	NM_144611	NP_001241685	Q8WUJ1	NEUFC_HUMAN	Homo sapiens cytochrome b5 domain containing 2 (CYB5D2), transcript variant 1, mRNA.	126	Cytochrome b5 heme-binding.				nervous system development	extracellular region	heme binding			breast(1)|large_intestine(3)|liver(2)|ovary(1)	7						ATGAGAAGAATTATGTGTGTGT	0.460												
SENP3	26168	broad.mit.edu	37	17	7467048	7467048	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:7467047_7467047GC>G	uc002ghm.3	+	1	937	c.654_654GC>G	c.(652-654)gggfs	p.G218fs	EIF4A1_uc002gho.2_5'UTR|SENP3_uc002ghn.1_5'Flank	NM_015670	NP_056485	Q9H4L4	SENP3_HUMAN	Homo sapiens SUMO1/sentrin/SMT3 specific peptidase 3 (SENP3), mRNA.	218					proteolysis	MLL1 complex|nucleolus	cysteine-type peptidase activity			central_nervous_system(1)|ovary(1)	2		Prostate(122;0.157)				TGCCCTCTGGGCCCCCCATGG	0.652												
PFAS	5198	broad.mit.edu	37	17	8167809	8167809	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:8167808_8167808GC>G	uc002gkr.3	+	16	2079	c.1938_1938GC>G	c.(1936-1938)aagfs	p.K646fs	PFAS_uc010vuv.2_Frame_Shift_Del_p.K222fs|PFAS_uc002gks.3_5'Flank	NM_012393	NP_036525	O15067	PUR4_HUMAN	Homo sapiens phosphoribosylformylglycinamidine synthase (PFAS), mRNA.	646					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			central_nervous_system(3)|endometrium(8)|kidney(2)|large_intestine(2)|lung(9)|ovary(3)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(3)	35					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TGCAGAGGAAGCCCCCCATGC	0.647												
SREBF1	6720	broad.mit.edu	37	17	17721094	17721094	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:17721093_17721093AG>A	uc002gru.2	-	6	1515	c.1321_1321CT>T	c.(1321-1323)ttgfs	p.L441fs	SREBF1_uc002grp.2_Frame_Shift_Del_p.P10fs|SREBF1_uc002grq.2_5'UTR|SREBF1_uc002grr.2_Frame_Shift_Del_p.L187fs|SREBF1_uc002grs.2_Frame_Shift_Del_p.L417fs|SREBF1_uc002grt.2_Frame_Shift_Del_p.L471fs|SREBF1_uc010cpp.1_Frame_Shift_Del_p.L417fs|SREBF1_uc010cpq.1_Frame_Shift_Del_p.L441fs	NM_004176	NP_004167	P36956	SRBP1_HUMAN	Homo sapiens sterol regulatory element binding transcription factor 1 (SREBF1), transcript variant 2, mRNA.	441	Gly/Pro/Ser-rich.|Interaction with LMNA (By similarity).				cellular response to starvation|cholesterol metabolic process|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter	ER to Golgi transport vesicle membrane|Golgi membrane|endoplasmic reticulum|endoplasmic reticulum membrane|integral to membrane|nuclear envelope|nucleus	protein binding|sequence-specific DNA binding transcription factor activity|sterol response element binding			cervix(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(5)|skin(1)|urinary_tract(1)	14						CCAAGGGACAAGGGGCTGCTC	0.642												
NEK8	284086	broad.mit.edu	37	17	27068996	27068996	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:27068995_27068995TC>T	uc002hcp.3	+	14	2069	c.2069_2069TC>T	c.(2068-2070)gtcfs	p.V690fs	TRAF4_uc002hcq.1_5'Flank|TRAF4_uc002hcs.3_5'Flank	NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	Homo sapiens NIMA (never in mitosis gene a)- related kinase 8 (NEK8), mRNA.	690						cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(3)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|liver(1)|lung(12)|ovary(2)|pancreas(1)|prostate(1)|skin(2)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	35	Lung NSC(42;0.0158)					GATGAGCCGGTCCCCCCCTGA	0.582												
ATAD5	79915	broad.mit.edu	37	17	29185289	29185289	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:29185288_29185288TA>T	uc002hfs.1	+	8	3246	c.2903_2903TA>T	c.(2902-2904)ctafs	p.L968fs	ATAD5_uc002hft.1_Frame_Shift_Del_p.L865fs	NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	Homo sapiens ATPase family, AAA domain containing 5 (ATAD5), mRNA.	968					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(8)|kidney(3)|large_intestine(18)|lung(13)|ovary(3)|pancreas(1)	51		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				CCCTTACTCCTAAAAAAACAA	0.308												
CDK12	51755	broad.mit.edu	37	17	37687472	37687472	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:37687471_37687471TG>T	uc010cvv.3	+	13	4961	c.4375_4375TG>T	c.(4375-4377)tggfs	p.W1459fs	CDK12_uc002hrw.4_Frame_Shift_Del_p.W1450fs	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Homo sapiens cyclin-dependent kinase 12 (CDK12), transcript variant 1, mRNA.	1459					RNA splicing|mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|RNA polymerase II carboxy-terminal domain kinase activity|cyclin-dependent protein kinase activity|protein binding			NS(4)|breast(3)|endometrium(5)|kidney(4)|large_intestine(11)|lung(23)|ovary(11)|prostate(4)|skin(2)|urinary_tract(3)	70						AGGCCTTCACTGGGGGGGCCC	0.557			"""Mis, N, F"""		serous ovarian					TCGA Ovarian(9;0.13)		
TOP2A	7153	broad.mit.edu	37	17	38573080	38573083	+	Frame_Shift_Del	DEL	ACAG	ACAG	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:38573079_38573082AACAG>A	uc002huq.3	-	1	246_249	c.87_90CTGTT>T	c.(85-90)tctgttfs	p.S29fs		NM_001067	NP_001058	P11388	TOP2A_HUMAN	Homo sapiens topoisomerase (DNA) II alpha 170kDa (TOP2A), mRNA.	29					DNA ligation|DNA repair|DNA topological change|DNA-dependent DNA replication|apoptotic chromosome condensation|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|phosphatidylinositol-mediated signaling|positive regulation of apoptosis|positive regulation of retroviral genome replication|resolution of meiotic recombination intermediates|sister chromatid segregation	DNA topoisomerase complex (ATP-hydrolyzing)|cytoplasm|nucleolus|nucleoplasm|synaptonemal complex	ATP binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|chromatin binding|drug binding|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity|ubiquitin binding			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(8)|lung(9)|ovary(5)|pancreas(2)|prostate(3)|skin(1)|upper_aerodigestive_tract(2)	39		Breast(137;0.00328)	STAD - Stomach adenocarcinoma(5;0.00183)		Amsacrine(DB00276)|Ciprofloxacin(DB00537)|Dexrazoxane(DB00380)|Doxorubicin(DB00997)|Enoxacin(DB00467)|Epirubicin(DB00445)|Etoposide(DB00773)|Fleroxacin(DB04576)|Gatifloxacin(DB01044)|Idarubicin(DB01177)|Levofloxacin(DB01137)|Lomefloxacin(DB00978)|Lucanthone(DB04967)|Mitoxantrone(DB01204)|Moxifloxacin(DB00218)|Norfloxacin(DB01059)|Ofloxacin(DB01165)|Pefloxacin(DB00487)|Podofilox(DB01179)|Sparfloxacin(DB01208)|Teniposide(DB00444)|Trovafloxacin(DB00685)|Valrubicin(DB00385)	AGATTCTTTCAACAGACAGTCTTT	0.338												
KRT34	3885	broad.mit.edu	37	17	39538519	39538519	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:39538518_39538518GA>G	uc002hwm.3	-	0	119	c.107_107TC>C	c.(106-108)tccfs	p.S36fs		NM_021013	NP_066293	O76011	KRT34_HUMAN	Homo sapiens keratin 34 (KRT34), mRNA.	36	Head.				epidermis development	intermediate filament	protein binding|structural molecule activity			NS(1)|breast(2)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(4)|lung(9)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	25		Breast(137;0.000496)				ACAGGTAATGGAAAAGCAGGT	0.582												
ACLY	47	broad.mit.edu	37	17	40062802	40062802	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40062801_40062801AC>A	uc002hyg.3	-	7	1009	c.846_846GT>T	c.(844-846)ggtfs	p.G282fs	ACLY_uc002hyh.3_Frame_Shift_Del_p.G282fs|ACLY_uc002hyi.3_Frame_Shift_Del_p.G336fs|ACLY_uc010wfx.2_Frame_Shift_Del_p.G336fs|ACLY_uc010wfy.2_Intron	NM_001096	NP_001087	P53396	ACLY_HUMAN	Homo sapiens ATP citrate lyase (ACLY), transcript variant 1, mRNA.	282					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity		NTN1/ACLY(2)	breast(2)|central_nervous_system(1)|cervix(1)|endometrium(6)|kidney(3)|large_intestine(5)|lung(4)|ovary(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	28		Breast(137;0.000143)				CAGAGGCGCCACCCCCGGCCA	0.602												
RAMP2	10266	broad.mit.edu	37	17	40914372	40914373	+	Splice_Site	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40914371_40914372A>AG	uc002ibg.3	+	3	232	c.164_splice	c.e3-1	p.G55_splice	LOC100190938_uc002ibe.4_5'Flank|LOC100190938_uc002ibf.4_5'Flank|RAMP2_uc010cyt.3_Frame_Shift_Ins_p.T59fs|RAMP2_uc021txv.1_Intron	NM_005854	NP_005845	O60895	RAMP2_HUMAN	Homo sapiens receptor (G protein-coupled) activity modifying protein 2 (RAMP2), mRNA.	55					intracellular protein transport|receptor-mediated endocytosis|regulation of G-protein coupled receptor protein signaling pathway	coated pit|integral to plasma membrane|lysosome	protein transporter activity			endometrium(2)|lung(1)|stomach(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0741)	Pramlintide(DB01278)	CTGTACCTACAGGGGGGACGGT	0.505												
WNK4	65266	broad.mit.edu	37	17	40939870	40939870	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40939869_40939869TG>T	uc002ibj.3	+	7	1883	c.1815_1815TG>T	c.(1813-1815)cctfs	p.P605fs	WNK4_uc010wgx.2_Frame_Shift_Del_p.P269fs|WNK4_uc002ibk.1_Frame_Shift_Del_p.P377fs|WNK4_uc010wgy.1_Intron	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	Homo sapiens WNK lysine deficient protein kinase 4 (WNK4), mRNA.	605					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity	p.L605I(1)		NS(1)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(10)|ovary(3)|prostate(1)|skin(5)|stomach(1)	35		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		TTCAGCCCCCTGGGGGGGTGC	0.632												
WNK4	65266	broad.mit.edu	37	17	40947730	40947731	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:40947729_40947730A>ACT	uc002ibj.3	+	15	3177_3178	c.3109_3110A>ACT	c.(3109-3111)actfs	p.T1037fs	WNK4_uc010wgx.2_Frame_Shift_Ins_p.T701fs|CCDC56_uc010wgz.1_3'UTR	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	Homo sapiens WNK lysine deficient protein kinase 4 (WNK4), mRNA.	1037					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			NS(1)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(10)|ovary(3)|prostate(1)|skin(5)|stomach(1)	35		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		AACATCCCCCACTCTCTCTGGT	0.574												
C17orf57	124989	broad.mit.edu	37	17	45451978	45451978	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:45451977_45451977TA>T	uc002iln.3	+	11	1448	c.1017_1017TA>T	c.(1015-1017)aatfs	p.N339fs	C17orf57_uc002ilm.3_Frame_Shift_Del_p.N243fs|C17orf57_uc002ill.1_Frame_Shift_Del_p.N95fs|C17orf57_uc010daz.1_Frame_Shift_Del_p.N291fs	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	Homo sapiens chromosome 17 open reading frame 57 (C17orf57), transcript variant A, mRNA.	339							calcium ion binding			breast(1)|central_nervous_system(2)|endometrium(3)|kidney(3)|large_intestine(7)|lung(11)|pancreas(1)|skin(5)|stomach(3)	36						AAAAGTTAAATAAAAAAAGCA	0.308												
HOXB13	10481	broad.mit.edu	37	17	46805884	46805884	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:46805883_46805883GC>G	uc002ioa.3	-	0	229	c.73_73GC>C	c.(73-75)cggfs	p.R25fs		NM_006361	NP_006352	Q92826	HXB13_HUMAN	Homo sapiens homeobox B13 (HOXB13), mRNA.	25					angiogenesis|epidermis development|response to wounding		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.G24G(1)		endometrium(2)|kidney(2)|lung(6)|prostate(1)	11						ACCAGATTCCGCCCCCCTCCC	0.652												
KIF2B	84643	broad.mit.edu	37	17	51902014	51902014	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:51902013_51902013TA>T	uc002iua.2	+	0	1775	c.1619_1619TA>T	c.(1618-1620)gtafs	p.V540fs	KIF2B_uc010wna.1_Non-coding_Transcript	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	Homo sapiens kinesin family member 2B (KIF2B), mRNA.	540					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity	p.R539R(1)		NS(1)|breast(2)|endometrium(7)|kidney(2)|large_intestine(15)|lung(58)|ovary(5)|prostate(4)|skin(7)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	104						GCAAACAGAGTAAAAAAATTA	0.418												
COX11	1353	broad.mit.edu	37	17	53040139	53040140	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:53040138_53040139C>CA	uc010wng.1	-	3	843_844	c.786_787G>TG	c.(784-789)tttgaafs	p.F262fs	COX11_uc010wne.1_Intron|COX11_uc010wnf.1_Intron|COX11_uc002iue.2_Non-coding_Transcript	NM_004375	NP_004366	Q9Y6N1	COX11_HUMAN	Homo sapiens COX11 cytochrome c oxidase assembly homolog (yeast) (COX11), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA.	262					respiratory chain complex IV assembly|respiratory gaseous exchange	integral to membrane|mitochondrial inner membrane	copper ion binding|cytochrome-c oxidase activity|electron carrier activity			endometrium(1)|kidney(1)|large_intestine(1)|liver(2)|lung(2)|ovary(1)|prostate(1)	9						TCCTTTGCTTCAAAAAAAGTGT	0.351												
RNF43	54894	broad.mit.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:56435160_56435160AC>A	uc002iwf.3	-	7	3933	c.1977_1977GT>T	c.(1975-1977)ggtfs	p.G659fs	RNF43_uc010wnv.2_Frame_Shift_Del_p.G618fs|RNF43_uc002iwh.4_Frame_Shift_Del_p.G659fs|RNF43_uc002iwg.4_Frame_Shift_Del_p.G659fs|RNF43_uc010dcw.3_Frame_Shift_Del_p.G532fs	NM_017763	NP_060233	Q68DV7	RNF43_HUMAN	Homo sapiens ring finger protein 43 (RNF43), mRNA.	659	Pro-rich.					endoplasmic reticulum membrane|integral to membrane|nuclear envelope	ligase activity|protein binding|zinc ion binding	p.G659fs*41(1)		NS(1)|biliary_tract(5)|breast(1)|central_nervous_system(1)|endometrium(10)|kidney(2)|large_intestine(14)|lung(9)|ovary(2)|pancreas(10)|prostate(1)|skin(4)	60	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GCTCGGAGGGACCCCCCCGCC	0.597												
HEATR6	63897	broad.mit.edu	37	17	58143675	58143676	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:58143674_58143675C>CT	uc002iyk.1	-	8	1328_1329	c.1311_1312G>AG	c.(1309-1314)aaagttfs	p.K437fs	HEATR6_uc010ddk.1_5'UTR|HEATR6_uc010wos.1_Frame_Shift_Ins_p.K269fs	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	Homo sapiens HEAT repeat containing 6 (HEATR6), mRNA.	437							binding			NS(1)|breast(4)|endometrium(5)|kidney(2)|large_intestine(4)|lung(7)|ovary(2)|pancreas(1)|prostate(4)|skin(10)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	44	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			CCATAAAGAACTTTTTTTTCTA	0.386												
BRIP1	83990	broad.mit.edu	37	17	59861749	59861749	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:59861748_59861748AT>A	uc002izk.2	-	10	1817	c.1511_1511AT>T	c.(1510-1512)atcfs	p.I504fs		NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	Homo sapiens BRCA1 interacting protein C-terminal helicase 1 (BRIP1), mRNA.	504					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			NS(1)|breast(3)|endometrium(9)|kidney(5)|large_intestine(9)|liver(2)|lung(15)|ovary(1)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(6)	55						AATTGGTGAGATTTTTTCCTC	0.343			"""F, N, Mis"""			"""AML, leukemia, breast"""		Involved in tolerance or repair of DNA crosslinks				
SLC16A5	9121	broad.mit.edu	37	17	73096719	73096720	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:73096718_73096719GGT>G	uc002jmr.3	+	4	1332_1333	c.960_961GGT>G	c.(958-963)ctggtgfs	p.L320fs	SLC16A5_uc002jmt.3_Frame_Shift_Del_p.L320fs|SLC16A5_uc002jmu.3_Frame_Shift_Del_p.L320fs|SLC16A5_uc010wrt.2_Frame_Shift_Del_p.L360fs	NM_004695	NP_004686	O15375	MOT6_HUMAN	Homo sapiens solute carrier family 16, member 5 (monocarboxylic acid transporter 6) (SLC16A5), mRNA.	320					organic anion transport	integral to plasma membrane|membrane fraction	secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)|cervix(2)|endometrium(5)|kidney(1)|large_intestine(4)|lung(7)|skin(1)|upper_aerodigestive_tract(1)	22	all_lung(278;0.226)		LUSC - Lung squamous cell carcinoma(166;0.162)|Lung(188;0.235)		Pyruvic acid(DB00119)	TCACTAACCTGGTGTGTGCGGC	0.619												
EVPL	2125	broad.mit.edu	37	17	74010507	74010509	+	Splice_Site	DEL	CTT	CTT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:74010506_74010508CCTT>C	uc010wss.1	-	18	2667	c.2439_splice	c.e18+1	p.K813_splice	EVPL_uc002jqi.2_Splice_Site_p.K791_splice|EVPL_uc010wst.1_Splice_Site_p.K261_splice	NM_001988	NP_001979	Q92817	EVPL_HUMAN	Homo sapiens envoplakin (EVPL), mRNA.	791	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			breast(4)|central_nervous_system(4)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(8)|lung(14)|ovary(2)|pancreas(2)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(4)	54						CCCAGCCTCACCTTCTGCGCCTG	0.670												
USP36	57602	broad.mit.edu	37	17	76803062	76803062	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:76803061_76803061GT>G	uc002jvz.1	-	13	2390	c.2065_2065AC>C	c.(2065-2067)ctgfs	p.L689fs	USP36_uc002jwa.1_Frame_Shift_Del_p.L689fs|USP36_uc002jwb.1_Frame_Shift_Del_p.L326fs|USP36_uc002jwc.1_Frame_Shift_Del_p.L389fs	NM_025090	NP_079366	Q9P275	UBP36_HUMAN	Homo sapiens ubiquitin specific peptidase 36 (USP36), mRNA.	689					ubiquitin-dependent protein catabolic process	nucleolus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(3)|large_intestine(5)|lung(12)|ovary(3)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	34			BRCA - Breast invasive adenocarcinoma(99;0.000842)|OV - Ovarian serous cystadenocarcinoma(97;0.151)			GAAAGGGCCAGTTTTTTGGCT	0.552												
ASPSCR1	79058	broad.mit.edu	37	17	79973078	79973078	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr17:79973077_79973077CT>C	uc002kcy.3	+	12	1577	c.1480_1480CT>C	c.(1480-1482)cttfs	p.L494fs	ASPSCR1_uc002kcx.3_Intron|ASPSCR1_uc021ufj.1_Intron|ASPSCR1_uc002kda.3_Intron	NM_001251888	NP_001238817	Q9BZE9	ASPC1_HUMAN	Homo sapiens alveolar soft part sarcoma chromosome region, candidate 1 (ASPSCR1), transcript variant 2, mRNA.	494							protein binding		ASPSCR1/TFE3(167)	breast(2)|large_intestine(2)	4	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			TGGGAGGCTTCTTTTTTGGGG	0.622			T	TFE3	alveolar soft part sarcoma							
ENOSF1	55556	broad.mit.edu	37	18	677751	677751	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:677750_677750CT>C	uc010dkf.3	-	11	1073	c.1062_1062AG>G	c.(1060-1062)aagfs	p.K354fs	ENOSF1_uc002kku.4_Frame_Shift_Del_p.K347fs|ENOSF1_uc002kkt.4_Frame_Shift_Del_p.K265fs|ENOSF1_uc010dke.3_Non-coding_Transcript|ENOSF1_uc002kkw.4_Frame_Shift_Del_p.K166fs	NM_202758	NP_974487	Q7L5Y1	ENOF1_HUMAN	Homo sapiens enolase superfamily member 1 (ENOSF1), transcript variant 3, mRNA.	347					cellular amino acid catabolic process	mitochondrion	isomerase activity|metal ion binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(3)|ovary(1)|prostate(1)	10						TACTTTCAAACTTTTTGGCCA	0.507												
RAB12	201475	broad.mit.edu	37	18	8636358	8636358	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:8636357_8636357TA>T	uc002knp.3	+	5	904	c.621_splice	c.e5+2	p.K207_splice		NM_001025300	NP_001020471	Q6IQ22	RAB12_HUMAN	Homo sapiens RAB12, member RAS oncogene family (RAB12), mRNA.	207					protein transport|small GTPase mediated signal transduction	Golgi membrane	GTP binding			breast(1)|lung(4)|prostate(1)|urinary_tract(1)	7						CTGAAAAAGGTAAAAAAAAGA	0.328												
ESCO1	114799	broad.mit.edu	37	18	19153442	19153442	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:19153441_19153441AT>A	uc002kth.1	-	3	2298	c.1364_1364AT>T	c.(1363-1365)atgfs	p.M455fs	ESCO1_uc002kti.1_Non-coding_Transcript	NM_052911	NP_443143	Q5FWF5	ESCO1_HUMAN	Homo sapiens establishment of cohesion 1 homolog 1 (S. cerevisiae) (ESCO1), mRNA.	455					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding			breast(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(11)|lung(10)|prostate(3)|upper_aerodigestive_tract(1)	35						AATTTCTTTCATTTTTTCCTG	0.333												
TTC39C	125488	broad.mit.edu	37	18	21698147	21698147	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:21698146_21698146TA>T	uc002kuw.3	+	7	1588	c.1136_1136TA>T	c.(1135-1137)ctafs	p.L379fs	TTC39C_uc002kuu.3_Frame_Shift_Del_p.L318fs	NM_001135993	NP_694943	Q8N584	TT39C_HUMAN	Homo sapiens tetratricopeptide repeat domain 39C (TTC39C), transcript variant 1, mRNA.	379							binding			breast(1)|endometrium(3)|kidney(3)|large_intestine(4)|lung(5)|ovary(1)|prostate(1)|skin(1)	19						TTTGAGAGGCTAAAAAATGAG	0.448												
DSG2	1829	broad.mit.edu	37	18	29116366	29116366	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:29116365_29116365GA>G	uc002kwu.4	+	10	1812	c.1624_1624GA>G	c.(1624-1626)gaafs	p.E542fs		NM_001943	NP_001934	Q14126	DSG2_HUMAN	Homo sapiens desmoglein 2 (DSG2), mRNA.	542					cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			breast(2)|central_nervous_system(6)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(5)|lung(17)|ovary(2)|prostate(4)|skin(2)|urinary_tract(1)	49			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			TGGCATGGCAGAAAAATGGAA	0.393												
C18orf34	374864	broad.mit.edu	37	18	30806796	30806797	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:30806795_30806796G>GT	uc010xbr.1	-	14	1759_1760	c.1617_1618C>AC	c.(1615-1620)aaactcfs	p.K539fs	C18orf34_uc010dme.1_Frame_Shift_Ins_p.K53fs|C18orf34_uc002kxn.2_Frame_Shift_Ins_p.K539fs|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Frame_Shift_Ins_p.K539fs|C18orf34_uc002kxp.3_Frame_Shift_Ins_p.K539fs	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	Homo sapiens chromosome 18 open reading frame 34 (C18orf34), transcript variant 1, mRNA.	539										NS(1)|endometrium(6)|kidney(2)|large_intestine(11)|liver(1)|lung(36)|ovary(3)|pancreas(1)|prostate(2)|skin(2)	65						CCTTGAGTGAGTTTTTTCAGGA	0.282												
ALPK2	115701	broad.mit.edu	37	18	56202354	56202355	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:56202353_56202354TTC>T	uc002lhj.4	-	4	5279_5280	c.5065_5066GAA>A	c.(5065-5067)aagfs	p.K1689fs	ALPK2_uc002lhk.1_Frame_Shift_Del_p.K1020fs	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	Homo sapiens alpha-kinase 2 (ALPK2), mRNA.	1689							ATP binding|protein serine/threonine kinase activity			NS(1)|central_nervous_system(3)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(13)|lung(33)|ovary(7)|prostate(1)|skin(10)|upper_aerodigestive_tract(2)	84						TTCCAGGGACTTCTCTCTCTCC	0.554												
PIGN	23556	broad.mit.edu	37	18	59777147	59777147	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:59777146_59777146GA>G	uc021ulb.1	-	13	1527	c.1495_1495TC>C	c.(1495-1497)ctgfs	p.L499fs	PIGN_uc021ulc.1_Frame_Shift_Del_p.L125fs|PIGN_uc021uld.1_Frame_Shift_Del_p.L125fs	NM_176787	NP_789744	O95427	PIGN_HUMAN	Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class N (PIGN), transcript variant 1, mRNA.	499					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphotransferase activity, for other substituted phosphate groups	p.L499L(1)		breast(3)|central_nervous_system(1)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(2)|lung(7)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	22		Colorectal(73;0.187)				TGAATCAGCAGAAAAAATGCT	0.388												
KIAA1468	57614	broad.mit.edu	37	18	59878464	59878464	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:59878463_59878463GA>G	uc002lil.3	+	1	819	c.604_604GA>G	c.(604-606)gaafs	p.E202fs	KIAA1468_uc002lik.1_Frame_Shift_Del_p.E202fs|KIAA1468_uc010xel.2_Frame_Shift_Del_p.E202fs	NM_020854	NP_065905	Q9P260	K1468_HUMAN	Homo sapiens KIAA1468 (KIAA1468), mRNA.	202							binding			autonomic_ganglia(1)|breast(4)|endometrium(4)|kidney(4)|large_intestine(7)|lung(20)|ovary(2)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	47		Colorectal(73;0.186)				GGAAACAGATGAAAAAGTGGC	0.338												
TNFRSF11A	8792	broad.mit.edu	37	18	60029005	60029005	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:60029004_60029004GA>G	uc002lin.3	+	6	746	c.708_708GA>G	c.(706-708)aggfs	p.R236fs	TNFRSF11A_uc010dpv.3_Intron	NM_003839	NP_003830	Q9Y6Q6	TNR11_HUMAN	Homo sapiens tumor necrosis factor receptor superfamily, member 11a, NFKB activator (TNFRSF11A), mRNA.	236					adaptive immune response|cell-cell signaling|circadian temperature homeostasis|monocyte chemotaxis|osteoclast differentiation|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of cell proliferation|positive regulation of fever generation by positive regulation of prostaglandin secretion|response to interleukin-1|response to lipopolysaccharide	external side of plasma membrane|integral to membrane	metal ion binding|tumor necrosis factor receptor activity			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(2)|large_intestine(5)|lung(13)|skin(3)|upper_aerodigestive_tract(1)	29		Colorectal(73;0.188)				TTTGCTATAGGAAAAAAGGGA	0.423												
SERPINB12	89777	broad.mit.edu	37	18	61228376	61228376	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:61228375_61228375CA>C	uc010xeo.2	+	3	502	c.502_502CA>C	c.(502-504)caafs	p.Q168fs	SERPINB12_uc010xen.2_Frame_Shift_Del_p.Q148fs	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	Homo sapiens serpin peptidase inhibitor, clade B (ovalbumin), member 12 (SERPINB12), mRNA.	148					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity	p.Q167K(1)|p.G168G(1)		kidney(1)|large_intestine(5)|lung(19)|skin(1)	26						TGTTGATTTCCAAAAAAACCC	0.388												
DSEL	92126	broad.mit.edu	37	18	65178971	65178971	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr18:65178970_65178970CT>C	uc002lke.1	-	1	4130	c.2906_2906AG>G	c.(2905-2907)agafs	p.R969fs	DSEL_uc021ulg.1_Frame_Shift_Del_p.R969fs	NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	Homo sapiens dermatan sulfate epimerase-like (DSEL), mRNA.	959						integral to membrane	isomerase activity|sulfotransferase activity			NS(3)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(25)|lung(23)|ovary(4)|pancreas(1)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)	74		Esophageal squamous(42;0.129)				TTTAAATTTTCTTTTTTTGTC	0.378												
ARID3A	1820	broad.mit.edu	37	19	965041	965042	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:965040_965041C>CA	uc002lql.3	+	5	1448_1449	c.1158_1159C>CA	c.(1156-1161)accaatfs	p.T386fs		NM_005224	NP_005215	Q99856	ARI3A_HUMAN	Homo sapiens AT rich interactive domain 3A (BRIGHT-like) (ARID3A), mRNA.	386						cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(2)|ovary(1)	10		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGCAAGCACCAATGGCAGCTC	0.634												
ABCA7	10347	broad.mit.edu	37	19	1043448	1043448	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:1043447_1043447CT>C	uc002lqw.4	+	8	1136	c.905_905CT>C	c.(904-906)cctfs	p.P302fs	ABCA7_uc010dsb.1_Frame_Shift_Del_p.P164fs	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 7 (ABCA7), mRNA.	302					phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|Golgi membrane|endosome membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			NS(1)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(8)|large_intestine(7)|lung(22)|ovary(1)|pancreas(7)|prostate(4)|skin(3)|upper_aerodigestive_tract(1)	65		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAGATACACCTTTTACCCGG	0.637												
HMHA1	23526	broad.mit.edu	37	19	1074149	1074149	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:1074148_1074148AG>A	uc002lqz.1	+	6	1067	c.836_836AG>A	c.(835-837)gagfs	p.E279fs	HMHA1_uc010xgd.1_Frame_Shift_Del_p.E295fs|HMHA1_uc010xge.1_Frame_Shift_Del_p.E119fs|HMHA1_uc002lra.1_Frame_Shift_Del_p.E119fs|HMHA1_uc002lrb.1_Frame_Shift_Del_p.E162fs	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	Homo sapiens histocompatibility (minor) HA-1 (HMHA1), mRNA.	279					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			NS(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|lung(7)|ovary(1)|prostate(2)	16		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGCGCTGTGAGGGGGGCGTG	0.667												
ZNF554	115196	broad.mit.edu	37	19	2834447	2834447	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:2834446_2834446GA>G	uc002lwm.2	+	4	1411	c.1213_1213GA>G	c.(1213-1215)gaafs	p.E405fs	ZNF554_uc002lwl.2_Frame_Shift_Del_p.E354fs	NM_001102651	NP_001096121	Q86TJ5	ZN554_HUMAN	Homo sapiens zinc finger protein 554 (ZNF554), mRNA.	405					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(2)|large_intestine(3)|liver(3)|lung(10)|ovary(1)|upper_aerodigestive_tract(1)	23		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCACACCGGGGAAAAGCCCTA	0.522												
PLIN4	729359	broad.mit.edu	37	19	4511061	4511061	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:4511060_4511060GC>G	uc002mar.1	-	2	2870	c.2870_2870GC>C	c.(2869-2871)gcafs	p.A957fs	PLIN4_uc010dub.1_5'UTR	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	Homo sapiens perilipin 4 (PLIN4), mRNA.	957	27 X 33 AA approximate tandem repeat.					lipid particle|plasma membrane				NS(2)|breast(4)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(7)|lung(14)|ovary(1)|skin(2)|soft_tissue(1)|stomach(2)	41						CACATTCACTGCCCCCGTGAC	0.597												
SNAPC2	6618	broad.mit.edu	37	19	7987519	7987519	+	Frame_Shift_Del	DEL	C	C	-	rs143745112	byFrequency	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:7987518_7987518AC>A	uc002miw.2	+	4	932	c.874_874AC>A	c.(874-876)accfs	p.T292fs	SNAPC2_uc002mix.2_Non-coding_Transcript	NM_003083	NP_003074	Q13487	SNPC2_HUMAN	Homo sapiens small nuclear RNA activating complex, polypeptide 2, 45kDa (SNAPC2), transcript variant 1, mRNA.	292					snRNA transcription|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	sequence-specific DNA binding transcription factor activity			NS(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(1)|urinary_tract(1)	6						ACCAGAGGAGACCCCCCCAGC	0.667												
FBN3	84467	broad.mit.edu	37	19	8175743	8175743	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:8175742_8175742AC>A	uc002mjf.3	-	32	4337	c.4320_4320GT>T	c.(4318-4320)ggtfs	p.G1440fs		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	Homo sapiens fibrillin 3 (FBN3), mRNA.	1440	EGF-like 22; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			NS(1)|breast(9)|central_nervous_system(2)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(8)|large_intestine(15)|lung(53)|ovary(7)|pancreas(2)|prostate(3)|skin(10)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(2)	132						TGCAGTTGCCACCCCCTCGGT	0.597												
ZNF266	10781	broad.mit.edu	37	19	9524215	9524215	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:9524214_9524214GT>G	uc010dwq.3	-	8	2595	c.1387_1387AC>C	c.(1387-1389)ccafs	p.P463fs	ZNF266_uc002mll.3_Frame_Shift_Del_p.P463fs|ZNF266_uc002mlm.3_Frame_Shift_Del_p.P463fs|ZNF266_uc002mln.3_Frame_Shift_Del_p.P463fs|ZNF266_uc002mlo.3_Frame_Shift_Del_p.P463fs	NM_198058	NP_932175	Q14584	ZN266_HUMAN	Homo sapiens zinc finger protein 266 (ZNF266), mRNA.	463					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(1)|breast(2)|endometrium(2)|large_intestine(11)|lung(8)|ovary(1)|skin(2)|stomach(1)	28						CACGTGAATGGTTTTTTGGCG	0.448												
PRKACA	5566	broad.mit.edu	37	19	14218178	14218178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:14218177_14218177AT>A	uc002myc.3	-	1	291	c.91_91AT>T	c.(91-93)tggfs	p.W31fs	PRKACA_uc002myb.3_Frame_Shift_Del_p.W23fs|PRKACA_uc010xnm.1_5'UTR|PRKACA_uc002myd.3_5'UTR	NM_002730	NP_002721	P17612	KAPCA_HUMAN	Homo sapiens protein kinase, cAMP-dependent, catalytic, alpha (PRKACA), transcript variant 1, mRNA.	31					G2/M transition of mitotic cell cycle|activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|regulation of insulin secretion|transmembrane transport|triglyceride catabolic process|water transport	cAMP-dependent protein kinase complex|centrosome|cytosol|nucleoplasm|plasma membrane	ATP binding|cAMP-dependent protein kinase activity|cAMP-dependent protein kinase inhibitor activity|protein kinase binding	p.W31fs*15(1)		central_nervous_system(2)|endometrium(2)|kidney(2)|large_intestine(3)|lung(5)|ovary(1)|prostate(1)	16						GGACTTTCCCATTTTTTAAGA	0.547												
GIPC1	10755	broad.mit.edu	37	19	14591535	14591535	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:14591534_14591534GC>G	uc002myt.3	-	4	615	c.345_345GC>C	c.(343-345)ggcfs	p.G115fs	GIPC1_uc002myv.3_Frame_Shift_Del_p.G18fs|GIPC1_uc002myu.3_Frame_Shift_Del_p.G115fs|GIPC1_uc002myw.3_Frame_Shift_Del_p.G18fs|GIPC1_uc002myx.3_Frame_Shift_Del_p.G115fs|GIPC1_uc002myy.3_Frame_Shift_Del_p.G18fs	NM_005716	NP_974223	O14908	GIPC1_HUMAN	Homo sapiens GIPC PDZ domain containing family, member 1 (GIPC1), transcript variant 1, mRNA.	115					G-protein coupled receptor protein signaling pathway|endothelial cell migration|glutamate secretion|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|protein targeting|regulation of protein stability|regulation of synaptic plasticity|synaptic transmission	cell cortex|dendritic shaft|dendritic spine|membrane fraction|soluble fraction|synaptic vesicle|vesicle membrane	actin binding|myosin binding|protein homodimerization activity|receptor binding			endometrium(1)|lung(4)|upper_aerodigestive_tract(1)	6						GCCCGATCTGGCCCCCCAGGA	0.622											OREG0025316	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
SYDE1	85360	broad.mit.edu	37	19	15224736	15224737	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:15224735_15224736GGA>G	uc002nah.1	+	7	2200_2201	c.2169_2170GGA>G	c.(2167-2172)ctggagfs	p.L723fs	SYDE1_uc002nai.1_Frame_Shift_Del_p.L656fs|SYDE1_uc002naj.1_Frame_Shift_Del_p.L380fs	NM_033025	NP_149014	Q6ZW31	SYDE1_HUMAN	Homo sapiens synapse defective 1, Rho GTPase, homolog 1 (C. elegans) (SYDE1), mRNA.	723					activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			endometrium(4)|kidney(1)|large_intestine(7)|lung(2)|ovary(1)|pancreas(1)|skin(1)	17						TCCTGGATCTGGAGAGAGAGCT	0.609												
C19orf44	84167	broad.mit.edu	37	19	16612295	16612295	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:16612294_16612294GA>G	uc002neh.1	+	1	764	c.691_691GA>G	c.(691-693)gaafs	p.E231fs	MED26_uc002nee.2_Intron|C19orf44_uc002nef.1_Frame_Shift_Del_p.E231fs|C19orf44_uc002neg.3_Frame_Shift_Del_p.E231fs|C19orf44_uc010eai.1_Non-coding_Transcript	NM_032207	NP_115583	Q9H6X5	CS044_HUMAN	Homo sapiens chromosome 19 open reading frame 44 (C19orf44), mRNA.	231										endometrium(1)|large_intestine(5)|lung(5)|ovary(1)|skin(1)|stomach(1)|urinary_tract(2)	16						CTCTTCTAGAGAAAAAAACAC	0.373												
ZNF486	90649	broad.mit.edu	37	19	20308052	20308052	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:20308051_20308051GA>G	uc002nou.2	+	3	589	c.532_532GA>G	c.(532-534)gaafs	p.E178fs		NM_052852	NP_443084	Q96H40	ZN486_HUMAN	Homo sapiens zinc finger protein 486 (ZNF486), mRNA.	178					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(3)|large_intestine(3)|lung(3)|ovary(1)|upper_aerodigestive_tract(1)	11						AAGACATACTGAAAAAAAACC	0.303												
ZNF43	7594	broad.mit.edu	37	19	21992087	21992087	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:21992086_21992086AT>A	uc002nqj.3	-	3	883	c.753_753AT>T	c.(751-753)aatfs	p.N251fs	ZNF43_uc002nql.3_Frame_Shift_Del_p.N245fs|ZNF43_uc002nqm.3_Frame_Shift_Del_p.N245fs|ZNF43_uc010ecv.3_Frame_Shift_Del_p.N245fs|ZNF43_uc002nqk.3_Frame_Shift_Del_p.N181fs	NM_003423	NP_003414	P17038	ZNF43_HUMAN	Homo sapiens zinc finger protein 43 (ZNF43), mRNA.	251					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			autonomic_ganglia(1)|breast(2)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(14)|liver(1)|lung(16)|ovary(2)|prostate(3)|stomach(3)|upper_aerodigestive_tract(2)	51		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		ATCTAGTATAATTTTTTTTAT	0.348												
ZNF43	7594	broad.mit.edu	37	19	22002026	22002026	+	Splice_Site	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:22002025_22002025TA>T	uc002nqj.3	-	2	134	c.4_splice	c.e2-1	p.G2_splice	ZNF43_uc002nql.3_Splice_Site|ZNF43_uc002nqm.3_Splice_Site|ZNF43_uc010ecv.3_Splice_Site|ZNF43_uc002nqk.3_Intron	NM_003423	NP_003414	P17038	ZNF43_HUMAN	Homo sapiens zinc finger protein 43 (ZNF43), mRNA.	2					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			autonomic_ganglia(1)|breast(2)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(14)|liver(1)|lung(16)|ovary(2)|prostate(3)|stomach(3)|upper_aerodigestive_tract(2)	51		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		CAATGGTCCCTAAAAAAAACA	0.383												
TSHZ3	57616	broad.mit.edu	37	19	31768852	31768852	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:31768851_31768851CT>C	uc002nsy.4	-	1	1913	c.1848_1848AG>G	c.(1846-1848)aagfs	p.K616fs		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	Homo sapiens teashirt zinc finger homeobox 3 (TSHZ3), mRNA.	616					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(4)|endometrium(15)|kidney(9)|large_intestine(20)|lung(60)|ovary(4)|pancreas(2)|prostate(4)|skin(5)	123	Esophageal squamous(110;0.226)					TCTCAGTGACCTTTTTCACCA	0.577												
C19orf40	91442	broad.mit.edu	37	19	33464114	33464114	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:33464113_33464113AC>A	uc002nud.4	+	1	129	c.11_11AC>A	c.(10-12)aacfs	p.N4fs	CEP89_uc002nty.3_5'Flank|CEP89_uc010edg.3_5'Flank|CEP89_uc002nua.3_5'Flank|CEP89_uc002nuc.1_5'Flank	NM_152266	NP_689479	Q9BTP7	FAP24_HUMAN	Homo sapiens chromosome 19 open reading frame 40 (C19orf40), mRNA.	4					DNA repair	Fanconi anaemia nuclear complex	DNA binding|chromatin binding|protein binding			endometrium(1)|large_intestine(2)|lung(2)|prostate(2)	7	Esophageal squamous(110;0.137)					ATGGAAAAGAACCCCCCTGAT	0.612								Direct reversal of damage				
SLC7A10	56301	broad.mit.edu	37	19	33703794	33703794	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:33703793_33703793TG>T	uc002num.2	-	2	619	c.472_472CA>A	c.(472-474)accfs	p.T158fs	SLC7A10_uc002nul.2_5'Flank|SLC7A10_uc010xrq.2_Frame_Shift_Del_p.T131fs	NM_019849	NP_062823	Q9NS82	AAA1_HUMAN	Homo sapiens solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10 (SLC7A10), mRNA.	158					blood coagulation|cellular nitrogen compound metabolic process|ion transport|leukocyte migration	integral to plasma membrane	L-serine transmembrane transporter activity			central_nervous_system(1)|kidney(1)|large_intestine(4)|lung(8)|ovary(2)|skin(1)|stomach(1)	18	Esophageal squamous(110;0.137)					GAGGCTGTGGTGGGGGGGATG	0.637												
MLL2	8085	broad.mit.edu	37	19	36218451	36218451	+	Frame_Shift_Del	DEL	G	G	-	rs34078597		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:36218450_36218450AG>A	uc021usv.1	+	15	4229	c.4229_4229AG>A	c.(4228-4230)cagfs	p.Q1410fs	MLL2_uc021usu.1_Frame_Shift_Del_p.Q224fs	NM_014727	NP_055542	O14686	MLL2_HUMAN	Homo sapiens myeloid/lymphoid or mixed-lineage leukemia 4 (MLL4), mRNA.	0	Cys-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			NS(1)|breast(4)|central_nervous_system(38)|cervix(3)|endometrium(22)|haematopoietic_and_lymphoid_tissue(121)|kidney(35)|large_intestine(22)|lung(78)|ovary(3)|pancreas(2)|prostate(13)|skin(7)|stomach(3)|upper_aerodigestive_tract(9)|urinary_tract(5)	366						GGGGCCCTCCAGGGGGGCCTG	0.706			"""N, F, Mis"""		"""medulloblastoma, renal"""					HNSCC(34;0.089)		
C19orf33	64073	broad.mit.edu	37	19	38795555	38795557	+	In_Frame_Del	DEL	AGG	AGG	-	rs79297344		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:38795554_38795556AAGG>A	uc002ohu.1	+	3	369_371	c.271_273AAGG>A	c.(271-273)aag>A	p.K91del	YIF1B_uc002ohw.2_3'UTR|YIF1B_uc002ohx.2_3'UTR|YIF1B_uc010xtx.1_3'UTR|YIF1B_uc010xty.1_3'UTR|YIF1B_uc002oia.2_3'UTR|YIF1B_uc002ohy.2_3'UTR|YIF1B_uc002ohz.2_3'UTR|C19orf33_uc002ohv.1_3'UTR	NM_033520	NP_277055	Q9GZP8	IMUP_HUMAN	Homo sapiens chromosome 19 open reading frame 33 (C19orf33), mRNA.	91						nucleus						all_cancers(60;1.07e-06)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			AGTgaagaagaaggagaagggca	0.596												
ZNF223	7766	broad.mit.edu	37	19	44571253	44571253	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:44571252_44571252GA>G	uc002oyf.1	+	4	1524	c.1271_1271GA>G	c.(1270-1272)cgafs	p.R424fs	ZNF284_uc010ejd.2_Non-coding_Transcript	NM_013361	NP_037493	Q9UK11	ZN223_HUMAN	Homo sapiens zinc finger protein 223 (ZNF223), mRNA.	424					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(3)|kidney(3)|large_intestine(3)|lung(6)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	18		Prostate(69;0.0352)				CTCCATTGCCGAAAAAAACCA	0.413												
EHD2	30846	broad.mit.edu	37	19	48244287	48244288	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:48244286_48244287A>AG	uc002phj.4	+	5	1479_1480	c.1229_1230A>AG	c.(1228-1230)cagfs	p.Q410fs	EHD2_uc010xyu.2_Frame_Shift_Ins_p.Q274fs	NM_014601	NP_055416	Q9NZN4	EHD2_HUMAN	Homo sapiens EH-domain containing 2 (EHD2), mRNA.	410					blood coagulation|endocytic recycling	nucleus|plasma membrane|recycling endosome membrane	ATP binding|GTP binding|GTPase activity|calcium ion binding|nucleic acid binding			endometrium(3)|large_intestine(7)|lung(2)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(3)	19		all_cancers(25;6.74e-07)|all_lung(116;2.02e-05)|Lung NSC(112;3.77e-05)|all_epithelial(76;4.89e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		OV - Ovarian serous cystadenocarcinoma(262;0.000336)|all cancers(93;0.000415)|Epithelial(262;0.0132)|GBM - Glioblastoma multiforme(486;0.0537)		GTGGGCGTGCAGGGGGGCGCTT	0.673												
GRIN2D	2906	broad.mit.edu	37	19	48918135	48918135	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:48918134_48918134GC>G	uc002pjc.4	+	5	1514	c.1426_1426GC>G	c.(1426-1428)gccfs	p.A476fs		NM_000836	NP_000827	O15399	NMDE4_HUMAN	Homo sapiens glutamate receptor, ionotropic, N-methyl D-aspartate 2D (GRIN2D), mRNA.	476						cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|protein binding			autonomic_ganglia(1)|breast(6)|endometrium(2)|large_intestine(9)|lung(12)|ovary(5)|pancreas(1)|prostate(1)	37		all_epithelial(76;1.11e-06)|all_lung(116;5.79e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		all cancers(93;0.00014)|OV - Ovarian serous cystadenocarcinoma(262;0.000233)|Epithelial(262;0.0112)|GBM - Glioblastoma multiforme(486;0.0161)	L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Orphenadrine(DB01173)	TCCACCGGATGCCCCCCGCCC	0.607												
LMTK3	114783	broad.mit.edu	37	19	49012191	49012191	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:49012190_49012190CG>C	uc002pjk.3	-	5	562	c.562_562CG>G	c.(562-564)gccfs	p.A188fs		NM_001080434	NP_001073903			Homo sapiens lemur tyrosine kinase 3 (LMTK3), mRNA.											breast(3)|central_nervous_system(1)|endometrium(1)|large_intestine(1)|lung(9)|prostate(1)	16		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		ACCACCTGGGCGGGGGTGTAG	0.642												
FAM71E1	112703	broad.mit.edu	37	19	50979605	50979605	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:50979604_50979604AG>A	uc002psh.3	-	0	400	c.42_42CT>T	c.(40-42)cctfs	p.P14fs	FAM71E1_uc002psg.3_Frame_Shift_Del_p.P14fs|FAM71E1_uc002psi.3_Non-coding_Transcript|C19orf63_uc021uyd.1_5'Flank|C19orf63_uc002psk.3_5'Flank|C19orf63_uc002psl.3_5'Flank	NM_138411	NP_612420	Q6IPT2	F71E1_HUMAN	Homo sapiens family with sequence similarity 71, member E1 (FAM71E1), mRNA.	14										breast(1)|kidney(1)|large_intestine(1)|lung(4)|prostate(1)	8		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.0077)|GBM - Glioblastoma multiforme(134;0.026)		ACGTCCCTGGAGGGGGCGGCT	0.677												
SIGLEC14	100049587	broad.mit.edu	37	19	52147202	52147202	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:52147201_52147201AG>A	uc002pxf.4	-	4	963	c.843_843CT>T	c.(841-843)cctfs	p.P281fs		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	Homo sapiens sialic acid binding Ig-like lectin 14 (SIGLEC14), mRNA.	281	Ig-like C2-type 2.				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(1)|large_intestine(3)|lung(15)|ovary(1)|upper_aerodigestive_tract(1)	29		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		TCAGTGAGGCAGGGGGGTTGC	0.602												
ZNF677	342926	broad.mit.edu	37	19	53740671	53740672	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:53740670_53740671CCA>C	uc002qbg.1	-	4	1460_1461	c.1309_1310TGG>G	c.(1309-1311)ggcfs	p.G437fs	ZNF677_uc002qbf.1_Frame_Shift_Del_p.G437fs	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	Homo sapiens zinc finger protein 677 (ZNF677), mRNA.	437					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(3)|kidney(3)|large_intestine(13)|lung(6)|ovary(1)|pancreas(1)|skin(2)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	36				GBM - Glioblastoma multiforme(134;0.00352)		AAAAGCCCTGCCACACACATTA	0.371												
USP29	57663	broad.mit.edu	37	19	57640239	57640240	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:57640238_57640239T>TA	uc002qny.3	+	3	551_552	c.195_196T>TA	c.(193-198)tgtaaafs	p.C65fs	USP29_uc021vci.1_Frame_Shift_Ins_p.C65fs	NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	Homo sapiens ubiquitin specific peptidase 29 (USP29), mRNA.	65					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity	p.R68fs*7(1)		breast(3)|endometrium(4)|kidney(3)|large_intestine(15)|lung(47)|ovary(2)|pancreas(1)|prostate(2)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	85		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TTAGACATTGTAAAAAAAGACA	0.327												
ZNF419	79744	broad.mit.edu	37	19	58005228	58005228	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58005227_58005227AT>A	uc010ety.1	+	4	1545	c.1305_1305AT>A	c.(1303-1305)aaafs	p.K435fs	ZNF419_uc002qov.2_Frame_Shift_Del_p.K434fs|ZNF419_uc010etz.1_Frame_Shift_Del_p.K422fs|ZNF419_uc002qow.2_Frame_Shift_Del_p.K402fs|ZNF419_uc010eua.1_Frame_Shift_Del_p.K421fs|ZNF419_uc010eub.1_Frame_Shift_Del_p.K389fs|ZNF419_uc010euc.1_Frame_Shift_Del_p.K388fs	NM_001098491	NP_001091961	Q96HQ0	ZN419_HUMAN	Homo sapiens zinc finger protein 419 (ZNF419), transcript variant 1, mRNA.	434					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(8)|lung(10)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	26		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0252)|Lung(386;0.171)		AATGTGGGAAATTTTTTAGCC	0.413												
ZNF584	201514	broad.mit.edu	37	19	58928585	58928585	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr19:58928584_58928584GA>G	uc002qsp.3	+	3	1151	c.699_699GA>G	c.(697-699)cagfs	p.Q233fs	ZNF584_uc010yia.2_Non-coding_Transcript|ZNF584_uc010yib.2_3'UTR	NM_173548	NP_775819	Q8IVC4	ZN584_HUMAN	Homo sapiens zinc finger protein 584 (ZNF584), mRNA.	233					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(1)|kidney(3)|large_intestine(3)|lung(3)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	14		all_cancers(17;5.3e-17)|all_epithelial(17;3.71e-12)|Lung NSC(17;8.3e-05)|Colorectal(82;0.000147)|all_lung(17;0.000386)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0271)		GGAAACACCAGAAGGTTCACA	0.453												
ESF1	51575	broad.mit.edu	37	20	13714388	13714388	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:13714387_13714387CT>C	uc002woj.3	-	9	2039	c.1931_1931AG>G	c.(1930-1932)agafs	p.R644fs		NM_016649	NP_057733	Q9H501	ESF1_HUMAN	Homo sapiens ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) (ESF1), mRNA.	644	Lys-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|nucleoplasm				endometrium(3)|kidney(5)|large_intestine(8)|lung(11)|ovary(2)|skin(1)|stomach(1)	31						CCTTTTCAGTCTTTTTTTCTC	0.348												
SNRPB2	6629	broad.mit.edu	37	20	16717990	16717990	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:16717989_16717989GA>G	uc002wph.2	+	3	557	c.321_321GA>G	c.(319-321)aagfs	p.K107fs	SNRPB2_uc002wpi.2_Frame_Shift_Del_p.K107fs	NM_003092	NP_937863	P08579	RU2B_HUMAN	Homo sapiens small nuclear ribonucleoprotein polypeptide B (SNRPB2), transcript variant 1, mRNA.	107						U2 snRNP|catalytic step 2 spliceosome|nucleoplasm	RNA binding|nucleotide binding|protein binding			large_intestine(2)|lung(2)|urinary_tract(1)	5						aaaaagaaaagaaaaaagCCA	0.338												
DSTN	11034	broad.mit.edu	37	20	17581680	17581681	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:17581679_17581680G>GT	uc002wpr.3	+	1	555_556	c.300_301G>GT	c.(298-303)atgtttfs	p.M100fs	DSTN_uc002wpq.3_Frame_Shift_Ins_p.M83fs|DSTN_uc010gck.3_Frame_Shift_Ins_p.M83fs	NM_006870	NP_001011546	P60981	DEST_HUMAN	Homo sapiens destrin (actin depolymerizing factor) (DSTN), transcript variant 1, mRNA.	100	ADF-H.				actin filament severing|actin polymerization or depolymerization		actin binding			endometrium(1)|large_intestine(5)|lung(8)|skin(1)	15						AAGAGTTGATGTTTTTTTTGTG	0.356												
RALGAPA2	57186	broad.mit.edu	37	20	20493642	20493643	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:20493641_20493642CAG>C	uc002wrz.3	-	31	4514_4515	c.4371_4372CTG>G	c.(4369-4374)tctgatfs	p.S1457fs	RALGAPA2_uc002wry.3_Frame_Shift_Del_p.S1072fs|RALGAPA2_uc010zsg.2_Frame_Shift_Del_p.S905fs|RALGAPA2_uc002wsa.1_Frame_Shift_Del_p.S229fs	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	Homo sapiens Ral GTPase activating protein, alpha subunit 2 (catalytic) (RALGAPA2), mRNA.	1457					activation of Ral GTPase activity	cytosol|nucleus	Ral GTPase activator activity|protein heterodimerization activity			endometrium(14)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(6)|liver(1)|lung(25)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	54						ACTCTCACATCAGAGAGAGAGC	0.475												
CST1	1469	broad.mit.edu	37	20	23729754	23729754	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:23729753_23729753AC>A	uc002wtp.3	-	1	313	c.242_242GT>T	c.(241-243)gtgfs	p.V81fs		NM_001898	NP_001889	P01037	CYTN_HUMAN	Homo sapiens cystatin SN (CST1), mRNA.	81						extracellular region	cysteine-type endopeptidase inhibitor activity			kidney(1)|large_intestine(1)|lung(8)|ovary(1)|stomach(1)|urinary_tract(1)	13	Lung NSC(19;0.0676)|all_lung(19;0.148)					GAAGTAATTCACCCCCCCAAC	0.552												
PLAGL2	5326	broad.mit.edu	37	20	30789952	30789952	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:30789951_30789951AG>A	uc002wxn.2	-	1	248	c.31_31CT>T	c.(31-33)tggfs	p.W11fs		NM_002657	NP_002648	Q9UPG8	PLAL2_HUMAN	Homo sapiens pleiomorphic adenoma gene-like 2 (PLAGL2), mRNA.	11						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|cervix(1)|endometrium(2)|kidney(2)|liver(1)|lung(11)|ovary(1)|skin(1)|urinary_tract(1)	21			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			TCTTGAATCCAGGGGGGGACG	0.557												
ASXL1	171023	broad.mit.edu	37	20	31024833	31024833	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:31024832_31024832AT>A	uc021wbw.1	+	12	4749	c.4317_4317AT>A	c.(4315-4317)gcafs	p.A1439fs	ASXL1_uc002wxs.3_Frame_Shift_Del_p.A1438fs|ASXL1_uc010geb.3_Frame_Shift_Del_p.A1330fs	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	Homo sapiens additional sex combs like 1 (Drosophila) (ASXL1), transcript variant 1, mRNA.	1439					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding	p.Q1438*(1)|p.(574_1542)fs*?(1)		NS(1)|breast(2)|central_nervous_system(3)|endometrium(2)|haematopoietic_and_lymphoid_tissue(655)|kidney(5)|large_intestine(18)|liver(1)|lung(27)|ovary(1)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)	722						TCAAGCAGGCATTTTATGGGA	0.522			"""F, N, Mis"""		"""MDS, CMML"""							
SNTA1	6640	broad.mit.edu	37	20	32026753	32026753	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:32026752_32026752CA>C	uc002wzd.1	-	1	663	c.391_391TG>G	c.(391-393)gtgfs	p.V131fs	SNTA1_uc010zuf.1_Frame_Shift_Del_p.V131fs	NM_003098	NP_003089	Q13424	SNTA1_HUMAN	Homo sapiens syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component) (SNTA1), mRNA.	131	PDZ.|PH 1.				muscle contraction	cell junction|cytoplasm|cytoskeleton|sarcolemma	actin binding|calmodulin binding			breast(1)|large_intestine(4)|liver(1)|lung(4)|skin(1)|stomach(1)|urinary_tract(1)	13						GCATCCCCCACAAAAAGGGCC	0.547												
NCOA6	23054	broad.mit.edu	37	20	33338001	33338001	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:33338000_33338000CG>C	uc002xav.3	-	9	4569	c.1998_1998CG>G	c.(1996-1998)ccgfs	p.P666fs	NCOA6_uc002xaw.3_Frame_Shift_Del_p.P666fs|NCOA6_uc021wcd.1_Frame_Shift_Del_p.P666fs|NCOA6_uc021wce.1_Frame_Shift_Del_p.P666fs|NCOA6_uc021wcf.1_Frame_Shift_Del_p.P666fs	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	Homo sapiens nuclear receptor coactivator 6 (NCOA6), transcript variant 1, mRNA.	666	CREBBP-binding region.|Gln-rich.|NCOA1-binding region.|TBP/GTF2A-binding region.				DNA recombination|DNA repair|DNA replication|brain development|cellular lipid metabolic process|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			NS(2)|breast(6)|central_nervous_system(3)|cervix(1)|endometrium(9)|kidney(8)|large_intestine(16)|lung(37)|ovary(4)|prostate(5)|skin(13)|upper_aerodigestive_tract(2)|urinary_tract(1)	107						GATTTTGGCTCGGGGGGTTCA	0.567												
RALGAPB	57148	broad.mit.edu	37	20	37203485	37203486	+	Frame_Shift_Ins	INS	-	-	C	rs138886522	by1000genomes	TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:37203484_37203485T>TC	uc002xiw.3	+	29	4616_4617	c.4359_4360T>TC	c.(4357-4362)agtcccfs	p.S1453fs	RALGAPB_uc002xix.3_Frame_Shift_Ins_p.S1450fs|RALGAPB_uc002xiy.1_Intron|RALGAPB_uc002xiz.3_Frame_Shift_Ins_p.S1232fs	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Homo sapiens Ral GTPase activating protein, beta subunit (non-catalytic) (RALGAPB), mRNA.	1453					activation of Ral GTPase activity	intracellular	Ral GTPase activator activity|protein heterodimerization activity			breast(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(8)|lung(29)|ovary(1)|pancreas(1)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)	65						ACTCCTACAGTCCCCCCCATGT	0.431												
EMILIN3	90187	broad.mit.edu	37	20	39992288	39992288	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:39992287_39992287TG>T	uc002xjy.1	-	2	729	c.505_505CA>A	c.(505-507)agcfs	p.S169fs		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	Homo sapiens elastin microfibril interfacer 3 (EMILIN3), mRNA.	169						proteinaceous extracellular matrix				biliary_tract(1)|endometrium(2)|kidney(1)|large_intestine(2)|liver(1)|lung(15)|ovary(1)|prostate(2)|skin(3)|urinary_tract(2)	30		Myeloproliferative disorder(115;0.00425)				CCATGAGGGCTGGGGGCTGCT	0.657												
PTPN1	5770	broad.mit.edu	37	20	49196293	49196293	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:49196292_49196292TC>T	uc002xvl.3	+	7	1091	c.917_917TC>T	c.(916-918)atcfs	p.I306fs	PTPN1_uc010zys.2_Frame_Shift_Del_p.I233fs	NM_002827	NP_002818	P18031	PTN1_HUMAN	Homo sapiens protein tyrosine phosphatase, non-receptor type 1 (PTPN1), mRNA.	306					blood coagulation|interferon-gamma-mediated signaling pathway|negative regulation of insulin receptor signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytosol|endoplasmic reticulum membrane	protein tyrosine phosphatase activity|zinc ion binding			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(6)|lung(5)|skin(2)	16		Lung NSC(126;0.163)			Clodronate(DB00720)|Tiludronate(DB01133)	CCCGAGCATATCCCCCCACCT	0.567											OREG0026029	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
PMEPA1	56937	broad.mit.edu	37	20	56227349	56227349	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:56227348_56227348TG>T	uc002xyq.3	-	3	1018	c.625_625CA>A	c.(625-627)agcfs	p.S209fs	PMEPA1_uc002xyr.3_Frame_Shift_Del_p.S159fs|PMEPA1_uc002xys.3_Frame_Shift_Del_p.S174fs|PMEPA1_uc002xyt.3_Frame_Shift_Del_p.S159fs	NM_020182	NP_954640	Q969W9	PMEPA_HUMAN	Homo sapiens prostate transmembrane protein, androgen induced 1 (PMEPA1), transcript variant 1, mRNA.	209					androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			breast(3)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(4)|pancreas(1)|prostate(1)	16						GAGTTACTGCTGGGGGGGCAG	0.687												
EDN3	1908	broad.mit.edu	37	20	57896192	57896193	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:57896191_57896192T>TG	uc002yap.3	+	2	854_855	c.485_486T>TG	c.(484-486)gtgfs	p.V162fs	EDN3_uc002yao.1_Frame_Shift_Ins_p.V162fs|EDN3_uc002yaq.3_Frame_Shift_Ins_p.V162fs|EDN3_uc002yar.3_Frame_Shift_Ins_p.V162fs|EDN3_uc002yas.3_Frame_Shift_Ins_p.V162fs	NM_000114	NP_996917	P14138	EDN3_HUMAN	Homo sapiens endothelin 3 (EDN3), transcript variant 1, mRNA.	162	Endothelin-like.				cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of MAP kinase activity|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity	p.V162A(3)		endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|liver(1)|lung(9)|skin(2)|upper_aerodigestive_tract(2)	19	all_lung(29;0.0115)					TGCGCTTGTGTGGGGAGATATG	0.554												
SYCP2	10388	broad.mit.edu	37	20	58467121	58467121	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr20:58467120_58467120AT>A	uc002yaz.3	-	22	2428	c.2289_2289AT>T	c.(2287-2289)aatfs	p.N763fs		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	Homo sapiens synaptonemal complex protein 2 (SYCP2), mRNA.	763					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			NS(4)|breast(2)|central_nervous_system(1)|endometrium(7)|kidney(1)|large_intestine(14)|lung(12)|ovary(4)|prostate(1)|skin(2)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	53	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			GACTTTGCACATTTTTGCTAG	0.323												
BACH1	571	broad.mit.edu	37	21	30698571	30698571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:30698570_30698570GA>G	uc002ynk.3	+	2	668	c.425_425GA>G	c.(424-426)agafs	p.R142fs	BACH1_uc002ynj.3_Frame_Shift_Del_p.R142fs|BACH1_uc002ynl.2_Non-coding_Transcript	NM_206866	NP_996749	O14867	BACH1_HUMAN	Homo sapiens BTB and CNC homology 1, basic leucine zipper transcription factor 1 (BACH1), transcript variant 1, mRNA.	142						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|endometrium(5)|kidney(2)|large_intestine(8)|liver(1)|lung(7)|ovary(1)|urinary_tract(2)	27						GAATGCCCAAGAAAAAAATGC	0.378												
KRTAP15-1	254950	broad.mit.edu	37	21	31812780	31812781	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:31812779_31812780CCT>C	uc002yod.3	+	0	134_135	c.134_135CCT>C	c.(133-135)tccfs	p.S45fs		NM_181623	NP_853654	Q3LI76	KR151_HUMAN	Homo sapiens keratin associated protein 15-1 (KRTAP15-1), mRNA.	45						intermediate filament				kidney(1)|large_intestine(3)|lung(6)|skin(1)	11						CAACTGGGCTCCTCTCTCTACA	0.490												
IFNAR1	3454	broad.mit.edu	37	21	34727754	34727754	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:34727753_34727753TA>T	uc002yrn.3	+	10	1719	c.1572_1572TA>T	c.(1570-1572)catfs	p.H524fs	IFNAR1_uc011adv.2_Frame_Shift_Del_p.H455fs	NM_000629	NP_000620	P17181	INAR1_HUMAN	Homo sapiens interferon (alpha, beta and omega) receptor 1 (IFNAR1), mRNA.	524					JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	integral to plasma membrane	type I interferon receptor activity			breast(2)|central_nervous_system(1)|cervix(1)|kidney(2)|large_intestine(3)|liver(1)|lung(2)|skin(2)	14					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	ATGAAGATCATAAAAAATACA	0.313												
KCNJ15	3772	broad.mit.edu	37	21	39671215	39671215	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:39671214_39671214AC>A	uc021wjc.1	+	0	31	c.31_31AC>A	c.(31-33)accfs	p.T11fs	KCNJ15_uc002ywv.3_Frame_Shift_Del_p.T11fs|KCNJ15_uc002yww.3_Frame_Shift_Del_p.T11fs|KCNJ15_uc002ywx.3_Frame_Shift_Del_p.T11fs	NM_170737	NP_733933	Q99712	IRK15_HUMAN	Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 15 (KCNJ15), transcript variant 3, mRNA.	11					synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			autonomic_ganglia(1)|breast(2)|central_nervous_system(1)|kidney(2)|large_intestine(4)|lung(6)|ovary(2)|prostate(2)|skin(3)|urinary_tract(1)	24						CATGTCCAGCACCCCCCTGGT	0.527												
KRTAP10-2	386679	broad.mit.edu	37	21	45971060	45971060	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:45971059_45971059AG>A	uc002zfi.1	-	0	330	c.283_283CT>T	c.(283-285)tgcfs	p.C95fs	TSPEAR_uc002zfe.1_Intron|TSPEAR_uc010gpv.1_Intron	NM_198693	NP_941966	P60368	KR102_HUMAN	Homo sapiens keratin associated protein 10-2 (KRTAP10-2), mRNA.	95	22 X 5 AA repeats of C-C-X(3).					keratin filament				large_intestine(1)|lung(4)|skin(1)	6						GCCTGCTGGCAGGGGGAGGAG	0.672												
PRMT2	3275	broad.mit.edu	37	21	48080764	48080764	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr21:48080763_48080763GT>G	uc002zjx.3	+	8	1183	c.849_849GT>G	c.(847-849)gagfs	p.E283fs	PRMT2_uc002zjy.3_Frame_Shift_Del_p.E283fs|PRMT2_uc010gqm.3_Intron|PRMT2_uc011aga.2_Intron|PRMT2_uc011agb.2_Intron|PRMT2_uc011agc.2_Intron|PRMT2_uc002zjz.1_Frame_Shift_Del_p.E169fs	NM_206962	NP_996845	P55345	ANM2_HUMAN	Homo sapiens protein arginine methyltransferase 2 (PRMT2), transcript variant 1, mRNA.	283					developmental cell growth|induction of apoptosis|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of androgen receptor signaling pathway	cytosol|nucleus	androgen receptor binding|estrogen receptor binding|histone-arginine N-methyltransferase activity|peroxisome proliferator activated receptor binding|progesterone receptor binding|protein homodimerization activity|retinoic acid receptor binding|signal transducer activity|thyroid hormone receptor binding|transcription coactivator activity			NS(1)|breast(3)|endometrium(2)|large_intestine(2)|lung(5)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	16	Breast(49;0.247)	Lung NSC(3;0.245)		Epithelial(3;1.03e-07)|OV - Ovarian serous cystadenocarcinoma(3;4.68e-07)|all cancers(3;7.48e-07)|Colorectal(79;0.167)|Lung(125;0.203)|LUSC - Lung squamous cell carcinoma(216;0.23)|READ - Rectum adenocarcinoma(84;0.248)		CAGTTAAGGAGTTTTTTTCAA	0.433												
DEPDC5	9681	broad.mit.edu	37	22	32293527	32293527	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:32293526_32293526AG>A	uc011alu.2	+	39	4464	c.4262_4262AG>A	c.(4261-4263)gagfs	p.E1421fs	DEPDC5_uc011als.2_Frame_Shift_Del_p.E1321fs|DEPDC5_uc003als.3_Frame_Shift_Del_p.E1390fs|DEPDC5_uc011alv.2_Non-coding_Transcript|DEPDC5_uc003alt.3_Frame_Shift_Del_p.E1412fs|DEPDC5_uc003alv.3_Non-coding_Transcript|DEPDC5_uc003alu.3_Frame_Shift_Del_p.E839fs|DEPDC5_uc003alw.3_Frame_Shift_Del_p.E688fs|DEPDC5_uc011alx.2_Frame_Shift_Del_p.E238fs|DEPDC5_uc010gwk.3_Frame_Shift_Del_p.E416fs|DEPDC5_uc011aly.2_Frame_Shift_Del_p.E238fs	NM_001242896	NP_001229825	O75140	DEPD5_HUMAN	Homo sapiens DEP domain containing 5 (DEPDC5), transcript variant 4, mRNA.	1390					intracellular signal transduction					breast(1)|central_nervous_system(5)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(8)|lung(24)|ovary(5)|pancreas(2)|prostate(3)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	63						CCAGTTTTGGAGGGGCCTTTT	0.537												
C22orf28	51493	broad.mit.edu	37	22	32794006	32794007	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:32794005_32794006A>AT	uc003amm.2	-	6	867_868	c.736_737T>AT	c.(736-738)atgfs	p.M246fs	C22orf28_uc011ama.1_Non-coding_Transcript	NM_014306	NP_055121	Q9Y3I0	RTCB_HUMAN	Homo sapiens chromosome 22 open reading frame 28 (C22orf28), mRNA.	246					cell-matrix adhesion|substrate adhesion-dependent cell spreading|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|tRNA-splicing ligase complex	ATP binding|RNA ligase (ATP) activity|metal ion binding|vinculin binding	p.M246fs*11(2)		breast(1)|large_intestine(4)|lung(11)|prostate(2)|skin(2)|urinary_tract(1)	21						GTCGATGCCCATTTTTTTAGCA	0.460												
ACO2	50	broad.mit.edu	37	22	41919849	41919849	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:41919848_41919848AG>A	uc003bac.3	+	11	1407	c.1385_1385AG>A	c.(1384-1386)aagfs	p.K462fs		NM_001098	NP_001089	Q99798	ACON_HUMAN	Homo sapiens aconitase 2, mitochondrial (ACO2), nuclear gene encoding mitochondrial protein, mRNA.	462					citrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron ion binding|isocitrate hydro-lyase (cis-aconitate-forming) activity			breast(3)|endometrium(5)|large_intestine(2)|lung(6)|ovary(1)|prostate(1)|skin(2)|stomach(1)|urinary_tract(2)	23						GACATCAAGAAGGGGGAGAAG	0.577												
TCF20	6942	broad.mit.edu	37	22	42564716	42564716	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:42564715_42564715AG>A	uc003bcj.1	-	3	5961	c.5827_5827CT>T	c.(5827-5829)ttgfs	p.L1943fs	TCF20_uc003bck.1_Intron	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	Homo sapiens transcription factor 20 (AR1) (TCF20), transcript variant 1, mRNA.	1943					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(7)|large_intestine(13)|lung(22)|ovary(5)|prostate(1)|skin(2)|soft_tissue(1)|upper_aerodigestive_tract(2)|urinary_tract(5)	66						TTGTTCTGCAAGGGGGGGAGA	0.617											OREG0026603	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
TCF20	6942	broad.mit.edu	37	22	42610948	42610949	+	Frame_Shift_Ins	INS	-	-	G	rs138734341		TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:42610947_42610948T>TG	uc003bcj.1	-	0	498_499	c.364_365A>CA	c.(364-366)cagfs	p.Q122fs	TCF20_uc003bck.1_Frame_Shift_Ins_p.Q122fs	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	Homo sapiens transcription factor 20 (AR1) (TCF20), transcript variant 1, mRNA.	122				Q -> R (in Ref. 1).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(7)|large_intestine(13)|lung(22)|ovary(5)|prostate(1)|skin(2)|soft_tissue(1)|upper_aerodigestive_tract(2)|urinary_tract(5)	66						GCTGCTCCCCTGGGGGGGTCCA	0.564												
ALG12	79087	broad.mit.edu	37	22	50297546	50297546	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:50297545_50297545AG>A	uc003biy.3	-	9	1682	c.1408_1408CT>T	c.(1408-1410)ttcfs	p.F470fs		NM_024105	NP_077010	Q9BV10	ALG12_HUMAN	Homo sapiens asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae) (ALG12), mRNA.	470					GPI anchor biosynthetic process|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|protein folding	integral to membrane|intrinsic to endoplasmic reticulum membrane		p.F470fs*>20(2)		endometrium(1)|kidney(1)|large_intestine(2)|lung(5)|prostate(3)	12		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		BRCA - Breast invasive adenocarcinoma(115;0.199)|LUAD - Lung adenocarcinoma(64;0.247)		TGGACGTTGAAGGGGGGCAGT	0.672												
TRABD	80305	broad.mit.edu	37	22	50635925	50635925	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chr22:50635924_50635924TC>T	uc003bjs.1	+	6	683	c.578_578TC>T	c.(577-579)atcfs	p.I193fs	TRABD_uc003bjr.2_Frame_Shift_Del_p.I77fs	NM_025204	NP_079480	Q9H4I3	TRABD_HUMAN	Homo sapiens TraB domain containing (TRABD), mRNA.	193										breast(1)|central_nervous_system(1)|large_intestine(1)|liver(2)|lung(1)|upper_aerodigestive_tract(1)	7		all_cancers(38;1.07e-07)|all_epithelial(38;9.6e-07)|all_lung(38;0.00141)|Breast(42;0.00387)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		LUAD - Lung adenocarcinoma(64;0.105)		GACCGACCCATCCCCGTCACC	0.642												
CLCN4	1183	broad.mit.edu	37	X	10188763	10188763	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:10188762_10188762AC>A	uc004csy.4	+	11	2467	c.2037_2037AC>A	c.(2035-2037)gaafs	p.E679fs	CLCN4_uc011mid.2_Frame_Shift_Del_p.E585fs	NM_001830	NP_001821	P51793	CLCN4_HUMAN	Homo sapiens chloride channel 4 (CLCN4), mRNA.	679						early endosome membrane|integral to membrane|late endosome membrane	ATP binding|antiporter activity|voltage-gated chloride channel activity			breast(1)|endometrium(5)|kidney(2)|large_intestine(12)|lung(11)|ovary(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	36						TCACGGAGGAACCCCCCGAGC	0.567												
WAS	7454	broad.mit.edu	37	X	48545297	48545299	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:48545296_48545298GGAA>G	uc004dkm.4	+	6	743_745	c.686_688GGAA>G	c.(685-690)gggaag>gGag	p.K232del		NM_000377	NP_000368	P42768	WASP_HUMAN	Homo sapiens Wiskott-Aldrich syndrome (eczema-thrombocytopenia) (WAS), mRNA.	232					T cell receptor signaling pathway|blood coagulation|defense response|epidermis development|immune response	actin cytoskeleton|cytosol	identical protein binding|small GTPase regulator activity			breast(1)|central_nervous_system(2)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(1)|lung(9)|ovary(4)|skin(1)|upper_aerodigestive_tract(1)	28		all_lung(315;1.27e-10)				AAACGCTCAGGGAAGAAGAAGAT	0.571			"""Mis, N, F, S"""			lymphoma						
ZNF75D	7626	broad.mit.edu	37	X	134421688	134421689	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-5721-01A-11D-1600-08	TCGA-CG-5721-11A-01D-1600-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ed0d81a-b61c-4b8f-b99f-bd3c40dcd61a	3622f6a0-d481-4c2b-874c-1e3965f39982	g.chrX:134421687_134421688C>CT	uc022ceq.1	-	5	1304_1305	c.914_915G>AG	c.(913-915)aagfs	p.K305fs	DKFZp451F083_uc004eym.3_Intron|DKFZp451F083_uc022cep.1_Intron|ZNF75D_uc004eyo.3_Frame_Shift_Ins_p.K210fs	NM_007131	NP_009062	P51815	ZN75D_HUMAN	Homo sapiens zinc finger protein 75D (ZNF75D), transcript variant 1, mRNA.	305	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			autonomic_ganglia(1)|breast(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(5)|lung(14)|upper_aerodigestive_tract(1)|urinary_tract(2)	31						TCATTCTGGTCTTTTTTGATAC	0.371												
