Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PIK3CD	5293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9779982	9779982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_005026	exon10	c.T1246C	p.C416R	CAGGACTGCCCCA		149	33	0.22	155	0	0				149	43	0.29			
PTPRF	5792	mdanderson.org	37	1	44057118	44057118	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_002840	exon9	c.G1425T	p.V475V	GACCGTGGGCAGC		24	2	0.08	28	0	0				116	0	0.00			
.	0	bcgsc.ca	37	1	160864796	160864796	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	CACGCTCGACTTC		105	44	0.42	70	0	0				17	0	0.00			
ARHGAP30	257106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	161018593	161018595	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	ARHGAP30	NM_001025598	exon12	c.2217_2219del	p.739_740del	ACTCATCTCCTCC		285	65	0.23	202	0	0		105		106	0	0.00			
TTC13	79573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231075188	231075188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_024525	exon8	c.C844A	p.Q282K	TAGGCTGGTTTTT		55	7	0.13	55	0	0				1	0	0.00			
MUC2	4583	hgsc.bcm.edu	37	11	1093324	1093324	+	Missense_Mutation	SNP	G	G	A	rs201143282		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5143A	p.G1715S	CCCACCGGCACAC		41	4	0.10	33	2	0.0606060606		0	2	0	0				
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643254	1643254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	KRTAP5-4,NS,carcinoma,+2,6	KRTAP5-4	NM_001012709	exon1	c.T70C	p.C24R	AGCCACAGCCCCC		134	9	0.07	103	1	0.0097087379		2	6	0	0				
ABTB2	25841	mdanderson.org	37	11	34184247	34184247	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_145804	exon10	c.C2094T	p.S698S	GCCCTGGCTCGAC		45	3	0.07	41	0	0				9	0	0.00			
OR4A16	81327	hgsc.bcm.edu	37	11	55110715	55110715	+	Silent	SNP	G	G	A	rs77981146	bycluster;byfrequency;by1000genomes	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	OR4A16,NS,lymphoid_neoplasm,0,1	OR4A16	NM_001005274	exon1	c.G39A	p.L13L	CCTCCTGGGCCTC		35	4	0.11	45	0	0	0.006	0	1	0	0				
OR4A16	81327	hgsc.bcm.edu	37	11	55110739	55110739	+	Silent	SNP	G	G	A	rs78513473	bycluster;byfrequency	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	OR4A16,NS,carcinoma,0,1	OR4A16	NM_001005274	exon1	c.G63A	p.V21V	TGATGTGAAAAAA		52	5	0.10	44	0	0	0.002	0	1	0	0				
FOLR2	2350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71932007	71932007	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001113535	exon3	c.C244G	p.H82D	TGGGACCACTGCG		96	14	0.15	88	0	0				49	0	0.00			
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73070882	73070882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_014786	exon10	c.C4091T	p.A1364V	TAGGGGCATCCCA		107	24	0.22	115	0	0				38	5	0.13			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	bycluster	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	KRAS_ENST00000256078,NS,adenocarcinoma,0,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G35T	p.G12V	ACGCCACCAGCTC		228	51	0.22	152	0	0		0	25136	49	21	0.43			
MRPL42	28977	mdanderson.org	37	12	93881369	93881369	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_014050	exon5	c.G316T	p.G106X	GAGGAAGGACCTA		50	3	0.06	38	0	0				534	0	0.00			
BTBD11	121551	broad.mit.edu	37	12	108010914	108010914	+	Nonsense_Mutation	SNP	G	G	T	rs147351765	alternate_allele	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	BTBD11,scalp,malignant_melanoma,0,3	BTBD11	NM_001018072	exon8	c.G2050T	p.E684X	CATGGCGAGGAGA		78	3	0.04	79	0	0		122	3	5	0	0.00			
HECTD4	283450	broad.mit.edu	37	12	112622338	112622338	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	C12orf51_ENST00000377560,NS,carcinoma,0,2	.	NM_001109662	exon61	c.A10030C	p.T3344P	CGGGGGTCAGGCT		40	13	0.33	32	8	0.25			2	33	6	0.18			
NCOR2	9612	broad.mit.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	NCOR2_ENST00000405201,NS,carcinoma,0,11	NCOR2	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT		52	3	0.06	41	1	0.0243902439		475	11	37	0	0.00			
MYO16	23026	hgsc.bcm.edu	37	13	109318410	109318410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	MYO16,NS,carcinoma,-2,1	MYO16	NM_001198950	exon2	c.A205G	p.R69G	CTGAAAAGGCTGA		65	3	0.05	78	0	0		-2	1	1	0	0.00			
.	0	broad.mit.edu	37	14	68082826	68082827	+	RNA	INS	-	-	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	AGTGCAGTTTTTT		6	2	0.33	9	0	0				0	0				
ZFP36L1	677	mdanderson.org	37	14	69257094	69257094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001244701	exon3	c.C380A	p.P127H	GAGCTGGGCAGGG		35	3	0.09	31	0	0				138	0	0.00			
BATF	10538	mdanderson.org	37	14	75991478	75991478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_006399	exon2	c.G115T	p.A39S	CGTATTGCCGCCC		52	3	0.06	48	0	0				88	0	0.00			
SLC12A6	9990	mdanderson.org	37	15	34544565	34544565	+	Missense_Mutation	SNP	C	C	T	rs375887656		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	SLC12A6_ENST00000558589,bladder,carcinoma,0,6	SLC12A6_ENST00000558589	NM_133647	exon9	c.G1139A	p.R380H	AGGGTGCGGTTAC		125	5	0.04	91	0	0		0	6	95	0	0.00			
FAM98B	283742	broad.mit.edu	37	15	38776809	38776809	+	Silent	SNP	T	T	A	rs374461368		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	FAM98B	NM_173611	exon8	c.T1251A	p.G417G	AGGAGGTGGTGGT		94	5	0.05	93	1	0.0107526882		53		1	0	0.00			
TLE3	7090	mdanderson.org	37	15	70346959	70346959	+	Silent	SNP	G	G	A	rs367926967		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_005078	exon16	c.C1653T	p.G551G	GGCCTCGCCGCCC		45	3	0.07	56	0	0				170	0	0.00			
CREBBP	1387	mdanderson.org	37	16	3820600	3820600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_004380	exon14	c.C2851A	p.P951T	GCACAGGCGTCGG		51	3	0.06	45	0	0				144	0	0.00			
SOCS1	8651	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	11348860	11348860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_003745	exon2	c.G476T	p.R159L	ATGCGGCGCGGCG		31	5	0.16	10	0	0				42	4	0.10			
.	0	broad.mit.edu	37	16	31993369	31993371	+	RNA	DEL	CTC	CTC	-	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	GGACATCTCCTAC		35	12	0.34	20	2	0.1				7	0	0.00			
ADAD2	161931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84227812	84227812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_139174	exon2	c.G619A	p.A207T	ATCCCTGCTGTGG		78	12	0.15	73	0	0				0	0				
FLJ36000	0	broad.mit.edu	37	17	21906822	21906823	+	RNA	INS	-	-	TGTT	rs58465113	alternate_allele	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	GTGTGTGTGTGTG		9	4	0.44	5	0	0				2	0	0.00			
KLHL11	55175	broad.mit.edu	37	17	40010660	40010660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	KLHL11,colon,carcinoma,+2,1	KLHL11	NM_018143	exon2	c.G1459A	p.A487T	TTGGTGCCGATTC		164	4	0.02	125	0	0		44	1	44	0	0.00			
TMUB2	79089	broad.mit.edu	37	17	42266738	42266738	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	TMUB2	NM_001076674	exon3	c.T384G	p.G128G	TGGGGGTGGTGTT		56	13	0.23	51	10	0.1960784314		29		75	1	0.01			
LLGL2	3993	mdanderson.org	37	17	73564574	73564574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_004524	exon11	c.G1054T	p.A352S	CCCTATGCCCTGG		50	3	0.06	41	0	0				74	0	0.00			
TBCD	6904	broad.mit.edu	37	17	80851439	80851439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	TBCD	NM_005993	exon17	c.G1580T	p.G527V	CTCATGGTATTGA		338	8	0.02	376	1	0.0026595745		94		490	0	0.00			
FAM108A1	81926	hgsc.bcm.edu	37	19	1881263	1881263	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	FAM108A1,NS,carcinoma,0,2	FAM108A1	NM_031213	exon2	c.C303T	p.C101C	ATACATGCAGGAG		57	3	0.05	50	0	0		0	2	296	0	0.00			
FAM108A1	81926	broad.mit.edu;mdanderson.org	37	19	1881347	1881347	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	FAM108A1,NS,carcinoma,0,1	FAM108A1	NM_031213	exon2	c.T219C	p.R73R	GTCGGCACGCTCC		21	3	0.14	20	0	0		29	1	137	0	0.00			
ZNF799	90576	ucsc.edu	37	19	12501855	12501855	+	Missense_Mutation	SNP	A	A	G	rs201077492		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	ZNF799	NM_001080821	exon4	c.T1357C	p.C453R	TCCCACATTTGCA		160	5	0.03	140	4	0.0285714286		111		58	9	0.16	rescued with RNA-seq		
RHPN2	85415	hgsc.bcm.edu	37	19	33493842	33493842	+	Missense_Mutation	SNP	C	C	A	rs137892450	bycluster;byfrequency	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	RHPN2,NS,neuroblastoma,0,1	RHPN2	NM_033103	exon8	c.G825T	p.M275I	GCTGAGCATGGCA		68	3	0.04	43	1	0.023255814	0	0	1	11	0	0.00			
NUMBL	9253	broad.mit.edu	37	19	41173907	41173907	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	NUMBL	NM_004756	exon10	c.G1296A	p.Q432Q	CTGTTGCTGCTGC		55	3	0.05	41	0	0		49		69	0	0.00			
.	147711	bcgsc.ca	37	19	44977071	44977071	+	RNA	SNP	C	C	G	rs1897824	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	ATTTTGCGTATAG		136	13	0.10	143	3	0.020979021				2	0	0.00			
IZUMO2	126123	mdanderson.org	37	19	50657888	50657888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_152358	exon6	c.G592A	p.A198T	AGACAGCCAGAGA		36	3	0.08	30	0	0				3	0	0.00			
COBLL1	22837	broad.mit.edu	37	2	165586537	165586537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	COBLL1	NM_014900	exon3	c.C319A	p.Q107K	GGTTCTGTTCAGC		130	3	0.02	129	0	0		122		14	0	0.00			
GMPPA	29926	mdanderson.org	37	2	220370469	220370469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_205847	exon10	c.G886T	p.A296S	AAGGTGGCCCCCT		46	3	0.07	46	0	0				124	0	0.00			
FRG1B	284802	bcgsc.ca	37	20	29628229	29628229	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	FRG1B	.	.	.	.	TTAGGGGAAAATG		321	22	0.07	312	7	0.0224358974		181		136	0	0.00			
PIGT	51604	broad.mit.edu	37	20	44053178	44053178	+	Silent	SNP	C	C	A	rs79813306	bycluster	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	PIGT,NS,carcinoma,0,1	PIGT	NM_015937	exon11	c.C1443A	p.A481A	AGCAGCCAAGCCA		122	8	0.07	103	4	0.0388349515		85	1	371	6	0.02			
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46264898	46264898	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001174088	exon12	c.A1798C	p.R600R	AATAGCAGAGATC		119	18	0.15	117	0	0				67	15	0.22			
PCK1	5105	broad.mit.edu;mdanderson.org	37	20	56138710	56138710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	PCK1	NM_002591	exon6	c.G888T	p.M296I	CATGATGAACCCC		65	5	0.08	71	0	0		95		0	0				
RTEL1-TNFRSF6B	100533107	hgsc.bcm.edu	37	20	62311958	62311958	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	GCCGGGGCTGGGG		36	9	0.25	27	0	0				0	0				
ZNF512B	57473	mdanderson.org	37	20	62593699	62593699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_020713	exon14	c.C2192T	p.T731M	TTCAGCGTGGGGA		47	3	0.06	46	0	0				40	0	0.00			
BAGE	85319	broad.mit.edu	37	21	11058605	11058605	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	TAAAGATTTTTTT		6	2	0.33	14	0	0				0	0				
.	0	broad.mit.edu	37	22	20977441	20977441	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	TAAGGGAAAAAAA		8	3	0.38	5	0	0				0	0				
THAP7	80764	hgsc.bcm.edu;broad.mit.edu	37	22	21354471	21354471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	THAP7,trunk,malignant_melanoma,+1,1	THAP7	NM_030573	exon4	c.T628C	p.S210P	AGGGGGAGACTGG		70	5	0.07	59	1	0.0169491525		1	1	121	0	0.00			
POM121L9P	0	broad.mit.edu	37	22	24659809	24659809	+	RNA	SNP	G	G	A	rs376621154		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	ATCTGCGCACCCG		21	3	0.14	10	0	0				2	0	0.00			
POM121L9P	0	broad.mit.edu	37	22	24659813	24659813	+	RNA	SNP	C	C	T	rs368832816		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	GCGCACCCGGAGG		19	3	0.16	9	0	0				2	0	0.00			
TYMP	1890	mdanderson.org	37	22	50966985	50966985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001113756	exon3	c.C472A	p.L158M	ACTCCAGCTTATC		53	3	0.06	62	0	0				617	0	0.00			
VGLL4	9686	mdanderson.org	37	3	11606281	11606281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001128219	exon3	c.A485G	p.E162G	TGCCGCTCCCCCG		26	3	0.12	20	0	0				40	0	0.00			
CCDC14	64770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123665686	123665686	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_022757	exon7	c.T1186A	p.L396M	CCAACAAATATTT		294	51	0.17	252	0	0				117	28	0.24			
EHHADH	1962	broad.mit.edu	37	3	184971758	184971758	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	EHHADH	NM_001966	exon1	c.A53C	p.N18T	GGCGGGTTTCGGA		150	30	0.20	141	29	0.2056737589		73		24	1	0.04			
PTPN13	5783	mdanderson.org	37	4	87707089	87707089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_080685	exon40	c.G6360T	p.E2120D	TACTGAGGTAACA		44	3	0.07	48	0	0				44	0	0.00			
.	0	bcgsc.ca	37	4	93105127	93105127	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	GAGGTCCAAACCT		29	4	0.14	34	0	0				0	0				
FAM105A	54491	mdanderson.org	37	5	14608915	14608915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_019018	exon7	c.T686C	p.L229P	ACACCCTTTTTTC		49	3	0.06	49	0	0				47	0	0.00			
PCDHB10	56126	mdanderson.org	37	5	140573922	140573922	+	Silent	SNP	C	C	T	rs376773467	bycluster	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_018930	exon1	c.C1797T	p.N599N	CCAGAACGCCTGG		23	3	0.13	19	0	0				0	0				
PCDHB18	0	broad.mit.edu	37	5	140615614	140615614	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	PCDHB18,NS,carcinoma,0,2	PCDHB18	.	.	.	.	GGACCCGCACCTG		63	5	0.08	40	0	0		72	2	8	0	0.00			
SYNPO	11346	mdanderson.org	37	5	150028987	150028987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001166208	exon3	c.G1882T	p.V628L	ACTTTCGTGGAGA		58	3	0.05	77	0	0				33	0	0.00			
DCDC2	51473	broad.mit.edu	37	6	24301981	24301981	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	DCDC2	NM_001195610	exon5	c.C519A	p.V173V	TTCTGTGACCATT		171	4	0.02	197	0	0		53		4	0	0.00			
BAG6	7917	broad.mit.edu;mdanderson.org	37	6	31612829	31612829	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	BAG6	NM_004639	exon10	c.T1281C	p.A427A	CGGGGGAGCCCCC		48	6	0.13	58	6	0.1034482759		73		476	110	0.23			
MSH5-SAPCD1	100532732	hgsc.bcm.edu	37	6	31729509	31729509	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	CTTCCCTTTTCTC		61	4	0.07	76	0	0				2	0	0.00			
GPR115	221393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47678504	47678504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_153838	exon4	c.A182G	p.N61S	CTTCCAACTGCAG		193	22	0.11	184	0	0				0	0				
MCM7	4176	mdanderson.org	37	7	99697366	99697366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_005916	exon3	c.C122A	p.A41D	CGATGAGCCAGCC		53	3	0.06	45	0	0				1290	0	0.00			
LRCH4	4034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100173407	100173407	+	Splice_Site	SNP	T	T	C	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_002319	exon18	c.1777-2A>G	.	TTTGGCTGGGGTG		171	26	0.15	156	0	0				2	0	0.00			
MIR1207	100302175	mdanderson.org	37	8	129061433	129061433	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	TGGCTGGGTCTGG		47	3	0.06	20	0	0				0	0				
SLC24A2	25769	broad.mit.edu	37	9	19786692	19786692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	SLC24A2,NS,carcinoma,-1,1	SLC24A2	NM_001193288	exon1	c.C173A	p.A58D	GAAAAGGCACTGA		140	4	0.03	118	0	0		93	1	0	0				
ND1	10625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	3643	3643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	ENST00000361390	exon1	c.G337A	p.V113I	CTAGCCGTTTACT		11	5	0.45	18	0	0				0	0				
IL3RA	3563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	1501338	1501338	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_002183	exon12	c.C1117G	p.Q373E	GAAGTACAGGTCG		481	74	0.15	498	0	0				117	2	0.02			
