Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
NBPF1	55672	broad.mit.edu	37	1	16918395	16918395	+	Missense_Mutation	SNP	T	T	C	rs60769486		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	AAACATTTCTCTT		104	5	0.05	103	1	0.0097087379				3	0	0.00			
HIVEP3	59269	broad.mit.edu	37	1	42048123	42048123	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	HIVEP3	NM_024503	exon4	c.C2346A	p.S782S	TGAACCGGACCCT		149	4	0.03	127	0	0		235		2	0	0.00			
TMEM48	55706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	54269668	54269668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_018087	exon10	c.G999C	p.Q333H	CAGGTCCTGCAAG		283	55	0.19	270	0	0				53	18	0.34			
SEC22B	9554	broad.mit.edu	37	1	145109259	145109260	+	RNA	INS	-	-	A	rs11386827	bycluster;by1000genomes	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	CCAGCCCGGGGGC		11	4	0.36	5	0	0				0	0				
CFH	3075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196709833	196709833	+	Missense_Mutation	SNP	C	C	T	rs145975787	bycluster;byfrequency;by1000genomes	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_000186	exon18	c.C2867T	p.T956M	AAGTTACGTACAA		332	34	0.10	327	0	0	0.001			45	0	0.00			
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	228554833	228554843	+	Frame_Shift_Del	DEL	GACCAGTTTGA	GACCAGTTTGA	-	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	GACCAGTTTGA	GACCAGTTTGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	OBSCN	NM_001271223	exon97	c.22455_22465del	p.7485_7489del	CTGCTGGACCAGT		191	14	0.07	164	0	0		2142		1	0	0.00			
FMN2	56776	hgsc.bcm.edu	37	1	240371511	240371511	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	FMN2,NS,carcinoma,+2,1	FMN2	NM_020066	exon5	c.C3399G	p.P1133P	TCCTCCCCCTCTT		98	6	0.06	63	0	0		2	1	4	0	0.00			
ZNF496	84838	broad.mit.edu	37	1	247492780	247492780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ZNF496	NM_032752	exon3	c.A101G	p.E34G	GGAAGCTCCCCCT		308	6	0.02	267	4	0.0149812734		80		92	0	0.00			
TIMM23	100287932	broad.mit.edu	37	10	51592585	51592585	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	TIMM23	NM_006327	exon7	c.A549G	p.T183T	TAGTCCTGTCAGA		112	3	0.03	112	1	0.0089285714		4		509	0	0.00			
MUC2	4583	hgsc.bcm.edu	37	11	1092970	1092970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	MUC2_ENST00000441003,NS,carcinoma,-1,1	MUC2_ENST00000441003	NM_002457	exon30	c.A4789C	p.T1597P	ACCCCAACACCCA		37	3	0.08	51	1	0.0196078431		-1	1	0	0				
PHLDA2	7262	broad.mit.edu	37	11	2950232	2950232	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	PHLDA2	NM_003311	exon1	c.A363C	p.A121A	GGCGGGTGCGGCG		42	19	0.45	26	11	0.4230769231		10		0	0				
PHLDA2	7262	broad.mit.edu	37	11	2950513	2950513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	PHLDA2,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	PHLDA2	NM_003311	exon1	c.C82A	p.R28S	CCCCGCGCTTCTT		73	7	0.10	57	1	0.0175438596		10	1	17	0	0.00			
SMPD1	6609	hgsc.bcm.edu	37	11	6411972	6411972	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	SMPD1_ENST00000342245,colon,carcinoma,+1,2	SMPD1_ENST00000342245	NM_000543	exon1	c.T144G	p.A48A	GCTGGCTCTGTCT		83	5	0.06	61	1	0.0163934426		1	2	12	0	0.00			
SYVN1	84447	mdanderson.org	37	11	64895914	64895914	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_172230	exon16	c.C1794A	p.P598P	TGCATCGGGCTCT		68	4	0.06	60	0	0				155	0	0.00			
INPPL1	3636	ucsc.edu	37	11	71942183	71942183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	INPPL1	NM_001567	exon12	c.G1447T	p.D483Y	TGGCTGGACCTAC		42	4	0.10	54	0	0		120		75	0	0.00			
FAT3	120114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92573793	92573793	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	FAT3	NM_001008781	exon17	c.T10434A	p.N3478K	TCACAATGGGCCT		156	33	0.21	172	1	0.0058139535		1822		1	0	0.00			
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2743461	2743461	+	Splice_Site	SNP	A	A	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001129839	exon30	c.3829-2A>C	.	CCATGCAGCACTA		283	41	0.14	91	0	0				1	0	0.00			
PRH1-PRR4	0	hgsc.bcm.edu	37	12	11243716	11243716	+	RNA	SNP	T	T	C	rs199540487	bycluster	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	CACACATATATAT		16	7	0.44	7	0	0				0	0				
PRH1-PRR4	0	hgsc.bcm.edu	37	12	11243718	11243718	+	RNA	SNP	T	T	C	rs200560394	bycluster	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	CACATATATATAT		19	5	0.26	6	0	0				0	0				
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Missense_Mutation	SNP	G	G	A	rs199599214	byfrequency	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	TUBA1C,colon,carcinoma,0,1	TUBA1C	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG		427	36	0.08	282	18	0.0638297872		32	1	2972	1193	0.40			
TRAFD1	10906	broad.mit.edu	37	12	112579948	112579948	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	TRAFD1	NM_001143906	exon6	c.T699G	p.G233G	AGAGGGTGGTGAA		145	25	0.17	90	10	0.1111111111		42		63	0	0.00			
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120616506	120616506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_006836	exon7	c.G582T	p.Q194H	ATAGTTCTGGTTG		237	44	0.19	167	0	0				45	5	0.11			
CDX2	1045	mdanderson.org	37	13	28542962	28542962	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	CDX2,NS,carcinoma,-1,1	CDX2	NM_001265	exon1	c.C182G	p.P61R	GGCCCCGGGGACT		12	3	0.25	17	0	0		-1	1	0	0				
.	0	broad.mit.edu	37	13	52855276	52855277	+	RNA	DEL	TG	TG	-	rs72183844	alternate_allele	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	TGTGCTTGTGTGT		10	3	0.30	4	0	0				0	0				
ATP11A	23250	broad.mit.edu	37	13	113530168	113530168	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ATP11A	NM_032189	exon28	c.G3240T	p.V1080V	CATCGTGCTGCTG		92	3	0.03	60	0	0		225		4	0	0.00			
CHD8	57680	mdanderson.org	37	14	21871325	21871325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001170629	exon17	c.C3565A	p.Q1189K	CAGCCTGTCGAAG		91	4	0.04	63	0	0				20	0	0.00			
IPO4	79711	mdanderson.org	37	14	24653309	24653309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_024658	exon18	c.C1764A	p.S588R	AAATAGGCTGTAC		124	5	0.04	91	1	0.010989011				196	0	0.00			
.	0	broad.mit.edu	37	14	106622157	106622157	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	GTACCAAGCCTCC		127	5	0.04	92	2	0.0217391304				201	0	0.00			
ADAMTS17	170691	broad.mit.edu	37	15	100672218	100672218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ADAMTS17	NM_139057	exon12	c.A1715C	p.N572T	GGGGGGTTGTCAC		103	22	0.21	71	10	0.1408450704		127		0	0				
LOC653786	0	broad.mit.edu	37	16	22579761	22579764	+	RNA	DEL	TGTT	TGTT	-	rs372533285	bycluster;alternate_allele	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	TGTT	TGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	TGTGTGTGTTTGT		337	7	0.02	286	0	0				0	0				
USP31	57478	mdanderson.org	37	16	23083466	23083466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_020718	exon15	c.C2388A	p.S796R	TGGCTTGCTGCCC		54	3	0.06	46	0	0				12	0	0.00			
RBBP6	5930	broad.mit.edu;bcgsc.ca	37	16	24567688	24567688	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	RBBP6	NM_018703	exon7	c.594delC	p.F198fs	AAGTTTCATGATG		72	8	0.11	85	0	0		158		41	5	0.12			
PRRT2	112476	hgsc.bcm.edu	37	16	29825015	29825015	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	PRRT2,caecum,carcinoma,0,2	PRRT2	NM_001256442	exon2	c.G640C	p.A214P	AATGGGGCCCCCC		202	8	0.04	155	2	0.0129032258		0	2	2	0	0.00			
KAT8	84148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31129017	31129017	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_182958	exon1	c.A15G	p.G5G	ACAGGGAGCTGCT		54	12	0.22	58	0	0				2	0	0.00			
DDX19B	11269	broad.mit.edu	37	16	70363771	70363771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	DDX19B	NM_007242	exon9	c.G823A	p.A275T	TTCTCCGCCACCT		252	5	0.02	194	0	0		31		84	0	0.00			
HYDIN	54768	mdanderson.org	37	16	70954860	70954860	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001270974	exon46	c.C7419A	p.Y2473X	GTCCCAGTACATG		59	3	0.05	51	0	0				0	0				
IL17C	27189	broad.mit.edu	37	16	88705614	88705614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	IL17C	NM_013278	exon2	c.A232G	p.R78G	AGGGGGAGGCACG		67	3	0.04	56	1	0.0178571429		6		0	0				
ANKRD11	29123	broad.mit.edu	37	16	89346906	89346906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ANKRD11	NM_001256183	exon9	c.A6044C	p.Y2015S	GCGGGGTACGGCG		70	41	0.59	53	19	0.358490566		195		114	12	0.11			
SPG7	6687	mdanderson.org	37	16	89590464	89590464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_003119	exon4	c.C427T	p.R143C	CGGCTGCGCACCT		48	4	0.08	38	0	0				106	0	0.00			
PSMD11	5717	broad.mit.edu	37	17	30771555	30771555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	PSMD11	NM_002815	exon1	c.C14T	p.A5V	CGGCGGCGGTGGT		234	8	0.03	218	1	0.004587156		41		92	0	0.00			
C17orf66	256957	mdanderson.org	37	17	34190002	34190002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_152781	exon8	c.C753A	p.D251E	CACCTTGTCTTTA		101	5	0.05	125	0	0				0	0				
ACLY	47	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40028012	40028012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ACLY	NM_001096	exon25	c.C2867T	p.P956L	TCCATGGGGATAA		155	26	0.17	122	1	0.0081967213		85		186	48	0.26			
CDC27	996	mdanderson.org	37	17	45234325	45234325	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001114091	exon7	c.C796T	p.R266X	AACTTCGACCAGT		58	3	0.05	52	0	0				33	0	0.00			
MRPL45P2	0	broad.mit.edu	37	17	45560579	45560579	+	RNA	DEL	C	C	-	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	TTTTTTCTTTTTT		237	7	0.03	186	0	0				0	0				
UTP18	51096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	49338191	49338191	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_016001	exon1	c.G246A	p.E82E	GGAGGAGGACAAA		174	31	0.18	123	0	0				70	15	0.21			
.	0	broad.mit.edu	37	17	62949617	62949620	+	RNA	DEL	AAAA	AAAA	-	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	AAAA	AAAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	CATCTCAAAAAAA		6	2	0.33	7	0	0				4	0	0.00			
TMC6	11322	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	76117157	76117157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	TMC6	NM_001127198	exon12	c.G1472A	p.R491H	AGGACACGGCACA		82	6	0.07	65	0	0		42		87	0	0.00			
MUC16	94025	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	9048471	9048471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	MUC16	NM_024690	exon5	c.A33160G	p.S11054G	TTGTACTGTTTAC		76	6	0.08	51	0	0		4315		0	0				
ALKBH6	84964	broad.mit.edu	37	19	36501930	36501930	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ALKBH6	NM_198867	exon5	c.C286A	p.R96R	TCCCTCGGGGATG		120	3	0.03	73	0	0		16		112	0	0.00			
MAMSTR	284358	broad.mit.edu	37	19	49218600	49218600	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	MAMSTR	NM_001130915	exon5	c.A344C	p.D115A	TGGGGGTCCGCCC		143	22	0.15	99	7	0.0707070707		36		3	0	0.00			
LENG9	94059	mdanderson.org	37	19	54974333	54974333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_198988	exon1	c.G443A	p.R148H	AAGAAGCGCACGC		14	2	0.14	10	0	0				4	0	0.00			
ZNF814	730051	bcgsc.ca;mdanderson.org	37	19	58385788	58385788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ZNF814	NM_001144989	exon3	c.T970C	p.Y324H	ATTCATAAGGTCT		180	7	0.04	127	0	0		93		11	0	0.00			
APOB	338	broad.mit.edu	37	2	21255321	21255321	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	APOB	NM_000384	exon10	c.C1257A	p.P419P	GGGCTCGGGGATC		70	3	0.04	70	0	0		761		0	0				
EIF5B	9669	broad.mit.edu	37	2	99977775	99977777	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	TGA	TGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	EIF5B	NM_015904	exon4	c.411_413del	p.137_138del	TGGGAGTGATGAT		163	7	0.04	136	0	0		95		94	0	0.00			
PCDP1	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	120362541	120362541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001271049	exon10	c.G1002T	p.L334F	AAAATTGAAGATT		110	19	0.17	85	1	0.0117647059				1	0	0.00			
THSD7B	80731	broad.mit.edu;mdanderson.org	37	2	137872842	137872842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	THSD7B	.	.	.	.	GCAGCTGCCGCAC		76	4	0.05	76	0	0		506		0	0				
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179599514	179599514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001267550	exon51	c.T15137C	p.V5046A	TCTTCAACTTTTA		240	33	0.14	289	0	0				0	0				
SLC4A3	6508	mdanderson.org	37	2	220505587	220505587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_201574	exon22	c.C3605T	p.T1202M	AGTCCACGGCGGC		54	3	0.06	53	0	0				49	0	0.00			
.	0	bcgsc.ca	37	20	6195658	6195658	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	TATATGCCCCCTC		169	26	0.15	177	0	0				1	0	0.00			
FRG1B	284802	bcgsc.ca	37	20	29628233	29628233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	FRG1B	.	.	.	.	GGGAAAATGGCTT		562	13	0.02	441	3	0.0068027211		181		132	0	0.00			
STAU1	6780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47782664	47782664	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_017453	exon3	c.G75C	p.Q25H	AAGAGACTGGTTC		139	28	0.20	113	0	0				10	3	0.30			
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60899145	60899145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_005560	exon43	c.C5759T	p.P1920L	TTGGAAGGCACTG		82	10	0.12	79	0	0				35	8	0.23			
BAGE	85319	broad.mit.edu	37	21	11058732	11058733	+	RNA	DEL	TT	TT	-	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	TTACTATTTTTTA		8	3	0.38	5	0	0				0	0				
KRTAP10-10	353333	mdanderson.org	37	21	46058034	46058034	+	Missense_Mutation	SNP	G	G	A	rs1785472	by2hit2allele	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_181688	exon1	c.G700A	p.V234M	CGCCCCGTGTGCT		111	11	0.10	77	1	0.012987013				0	0				
TTC38	55020	mdanderson.org	37	22	46664415	46664415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_017931	exon2	c.G38T	p.W13L	AGGCCTGGAAGGA		58	3	0.05	75	0	0				0	0				
CELSR1	9620	mdanderson.org	37	22	46765695	46765695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_014246	exon26	c.C7766A	p.A2589E	CCGACCGCCAGTC		39	3	0.08	53	0	0				19	0	0.00			
PHLDB2	90102	broad.mit.edu;bcgsc.ca	37	3	111667853	111667858	+	In_Frame_Del	DEL	TGCTGA	TGCTGA	-	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	TGCTGA	TGCTGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	PHLDB2	NM_001134439	exon10	c.2562_2567del	p.854_856del	GTTTCCTGCTGAT		108	7	0.06	95	0	0		449		8	0	0.00			
POPDC2	64091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119378799	119378799	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_022135	exon1	c.T472G	p.S158A	GCAGGGACAGGCG		114	11	0.10	113	0	0				1	0	0.00			
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130110226	130110226	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	COL6A5,NS,carcinoma,+1,1	COL6A5	NM_153264	exon7	c.G2621C	p.R874T	CGAACAGATCAGC		475	88	0.19	414	0	0		1	1	0	0				
.	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	159818881	159818881	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	AGAAAACGGAGAA		188	27	0.14	160	0	0				48	1	0.02			
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	bycluster	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	PIK3CA_ENST00000263967,NS,carcinoma,0,1370	PIK3CA_ENST00000263967	NM_006218	exon10	c.G1633A	p.E545K	ATCACTGAGCAGG		461	50	0.11	425	0	0		0	1370	15	2	0.13			
SLIT2	9353	mdanderson.org	37	4	20255518	20255518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_004787	exon1	c.C80T	p.A27V	CGCAGGCGTGCCC		24	2	0.08	24	0	0				0	0				
HMMR	3161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	162909769	162909769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001142556	exon13	c.G1507A	p.E503K	GCAACTGAGAGCT		306	63	0.21	344	0	0				19	9	0.47			
FOXQ1	94234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	1313401	1313401	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_033260	exon1	c.C462G	p.P154P	GTTCCCCTTTTTC		106	16	0.15	75	0	0				0	0				
LRRC16A	55604	mdanderson.org	37	6	25509914	25509914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001173977	exon18	c.G1426T	p.G476C	TTAGAAGGTTGCA		112	5	0.04	100	0	0				10	0	0.00			
DPCR1	135656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30919139	30919139	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_080870	exon2	c.A2898G	p.E966E	TGGAGAAACGACA		69	14	0.20	72	0	0				1	1	1.00			
DEF6	50619	broad.mit.edu	37	6	35278309	35278309	+	Missense_Mutation	SNP	G	G	T	rs150604825	bycluster;byfrequency;alternate_allele	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	DEF6	NM_022047	exon3	c.G311T	p.R104L	ACTATCGGGCAGA		100	3	0.03	76	0	0		36		60	0	0.00			
.	0	bcgsc.ca	37	7	35473	35473	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	TGCTGCTGCCGCC		304	11	0.04	202	3	0.0148514851				0	0				
GRID2IP	392862	mdanderson.org	37	7	6548894	6548894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001145118	exon12	c.T1822C	p.S608P	AGGGGGAGGGCAA		62	3	0.05	24	0	0				0	0				
SCRN1	9805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29994942	29994942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001145514	exon3	c.C254T	p.T85I	GCATAGGTCCTTG		156	19	0.12	117	0	0				40	7	0.18			
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	CCGGGGTCCTTGA		193	4	0.02	113	1	0.0088495575				0	0				
AZGP1P1	0	broad.mit.edu	37	7	99578706	99578706	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	GTTTACAGTGAAA		12	6	0.50	8	1	0.125				0	0				
KIF13B	23303	broad.mit.edu	37	8	28929816	28929816	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	KIF13B	NM_015254	exon39	c.C4539A	p.G1513G	GTCAGGGCCCATC		241	4	0.02	159	0	0		192		13	0	0.00			
FAM83A	84985	broad.mit.edu	37	8	124219708	124219708	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	FAM83A,NS,carcinoma,0,1	FAM83A	NM_032899	exon4	c.A1085C	p.H362P	CCCCACACCCGCC		56	11	0.20	26	4	0.1538461538		64	1	0	0				
RECQL4	9401	mdanderson.org	37	8	145738815	145738815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_004260	exon14	c.C2250A	p.S750R	TTCCCGGCTGCAC		52	3	0.06	23	0	0				220	0	0.00			
KCNV2	169522	broad.mit.edu	37	9	2717880	2717880	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	KCNV2	NM_133497	exon1	c.A141T	p.T47T	CTGGACAGAGGGC		238	6	0.03	152	0	0		72		0	0				
.	0	broad.mit.edu	37	9	68406792	68406792	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	GAGACCAAAGGCC		9	2	0.22	5	0	0				0	0				
GPR144	347088	mdanderson.org	37	9	127215734	127215734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001161808	exon4	c.A758G	p.Q253R	TGGGCCAGGATCA		53	3	0.06	36	0	0				0	0				
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138662153	138662153	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	KCNT1,NS,carcinoma,+1,1	KCNT1	NM_020822	exon17	c.G1629A	p.Q543Q	GGGACAGGAGTCT		58	9	0.16	61	0	0		1	1	0	0				
PNPLA7	375775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140379046	140379046	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001098537	exon21	c.C2340T	p.S780S	GATGGCGCTGAGG		85	10	0.12	93	0	0				0	0				
SPANXN5	494197	broad.mit.edu	37	X	52825639	52825639	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	SPANXN5	NM_001009616	exon2	c.C108T	p.L36L	CGGTTCGAGGACT		254	6	0.02	178	0	0		12		1	0	0.00			
AR	367	mdanderson.org	37	X	66766276	66766276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_000044	exon1	c.G1288T	p.A430S	TCAGCCGCCGCTT		27	3	0.11	27	0	0				0	0				
.	100874520	bcgsc.ca	37	Y	10011625	10011625	+	RNA	SNP	C	C	T	rs4033864		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	AATCAGCTTATTC		95	9	0.09	66	1	0.0151515152				1	0	0.00			
