Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CASZ1	54897	mdanderson.org	37	1	10699456	10699456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001079843	exon21	c.C4823A	p.P1608H	GGCGCGGGGCCCT		44	3	0.07	39	0	0				0	0				
TCHH	7062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152082981	152082981	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_007113	exon3	c.G2712A	p.Q904Q	CAGCAGCTGCTGT		131	16	0.12	140	0	0				0	0				
MCM10	55388	hgsc.bcm.edu	37	10	13230971	13230971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_182751	exon10	c.G1309T	p.G437X	TCTGGAGGACGAA		100	4	0.04	84	0	0				20	0	0.00			
ZEB1	6935	mdanderson.org	37	10	31816109	31816109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001174096	exon9	c.G3295A	p.A1099T	GACAGGGCTGAAA		16	2	0.13	20	0	0				36	0	0.00			
KIF5B	3799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	32323677	32323677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_004521	exon11	c.A1052G	p.N351S	ATCTTATTTTTTT		158	11	0.07	157	0	0				148	33	0.22			
GDF10	2662	mdanderson.org	37	10	48438614	48438614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_004962	exon1	c.G97A	p.G33S	GGCTGCCGGCCAC		23	2	0.09	22	0	0				0	0				
VDAC2	7417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	76970938	76970938	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_003375	exon2	c.T22A	p.C8S	CAGACTTGCGCGC		119	16	0.13	126	0	0				97	23	0.24			
ECHS1	1892	mdanderson.org	37	10	135180455	135180455	+	Nonsense_Mutation	SNP	G	G	T	rs200293355	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	ECHS1,colon,carcinoma,0,1	ECHS1	NM_004092	exon5	c.C557A	p.S186X	GCCAGCGACTTCC		44	3	0.07	26	0	0		0	1	396	0	0.00			
NLRP6	171389	mdanderson.org	37	11	281438	281438	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_138329	exon4	c.A1704G	p.S568S	GGTTTCAGAGCGT		53	4	0.08	46	0	0				2	0	0.00			
OR51G2	81282	mdanderson.org	37	11	4936427	4936427	+	Missense_Mutation	SNP	C	C	A	rs374071063	alternate_allele	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001005238	exon1	c.G467T	p.R156L	ACACTACGACCCA		53	3	0.06	42	0	0				0	0				
COMMD9	29099	hgsc.bcm.edu;mdanderson.org	37	11	36310946	36310946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_014186	exon1	c.C17A	p.A6E	TGCTCCGCTGTCA		53	4	0.08	64	0	0				42	0	0.00			
IFT46	56912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118416169	118416169	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_020153	exon12	c.C927T	p.S309S	ATGGAGGGACTGG		94	10	0.11	109	0	0				95	20	0.21			
PHLDB1	23187	mdanderson.org	37	11	118514575	118514575	+	Missense_Mutation	SNP	G	G	T	rs145786415	bycluster;alternate_allele	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001144758	exon14	c.G2935T	p.G979C	CGCAGCGGCCCCC		54	3	0.06	57	0	0				66	0	0.00			
TECTA	7007	broad.mit.edu	37	11	120989053	120989053	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	TECTA	NM_005422	exon6	c.T829C	p.L277L	GATGACTTGAACT		130	4	0.03	127	0	0		329		2	0	0.00			
KRT73	319101	mdanderson.org	37	12	53002214	53002214	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	KRT73,right_lower_lobe,carcinoma,0,1	KRT73	NM_175068	exon9	c.C1389A	p.A463A	CATCCCGGCCATG		39	3	0.08	42	0	0		0	1	0	0				
RAP1B	5908	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	69050092	69050092	+	Missense_Mutation	SNP	A	A	G	rs372360254		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001010942	exon6	c.A331G	p.M111V	GTTCCAATGATTC		200	16	0.08	222	0	0				96	18	0.19			
KCTD12	115207	mdanderson.org	37	13	77459340	77459340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_138444	exon1	c.C944A	p.T315N	TAGCTGGTCCAGA		43	3	0.07	48	0	0				51	0	0.00			
.	0	broad.mit.edu	37	14	20146543	20146544	+	RNA	INS	-	-	GTCCC	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	.	.	.	.	CTCAGCAGAACAG		8	5	0.63	1	0	0				0	0				
NIN	51199	mdanderson.org	37	14	51210176	51210176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_020921	exon24	c.G5259T	p.Q1753H	CGCACTCTGATGT		102	5	0.05	100	0	0				26	0	0.00			
TSHR	7253	mdanderson.org	37	14	81534631	81534631	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	TSHR_ENST00000554435,NS,carcinoma,+1,2	TSHR_ENST00000554435	NM_001018036	exon3	c.G276T	p.L92L	GCAGCTGGAATCA		50	3	0.06	57	0	0		1	2	1	0	0.00			
C15orf56	644809	mdanderson.org	37	15	40544585	40544585	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001039905	exon2	c.T387C	p.L129L	GAGGCGAAGGGCG		18	3	0.17	12	1	0.0833333333				0	0				
RFX7	64864	broad.mit.edu	37	15	56388298	56388298	+	Missense_Mutation	SNP	G	G	T	rs202048055	bycluster;alternate_allele	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	RFX7	NM_022841	exon9	c.C1628A	p.T543K	GATGATGTTTCGG		143	6	0.04	120	0	0		170		22	0	0.00			
CASKIN1	57524	mdanderson.org	37	16	2229742	2229742	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_020764	exon18	c.C3627A	p.P1209P	CAATGGGGGTAGG		12	2	0.17	18	0	0				0	0				
ABCA3	21	mdanderson.org	37	16	2339582	2339582	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001089	exon20	c.C2553A	p.A851A	CTGGATGGCCTGG		52	3	0.06	43	0	0				26	0	0.00			
C16orf96	342346	broad.mit.edu	37	16	4630064	4630064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	C16orf96	NM_001145011	exon7	c.G2290T	p.D764Y	ATGAAGGATCGCT		121	4	0.03	129	0	0		28		2	0	0.00			
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu	37	16	21073932	21073932	+	Silent	SNP	C	C	T	rs374099468		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_017539	exon25	c.G3591A	p.P1197P	CAAGTGCGGCTGC		118	5	0.04	121	0	0				1	0	0.00			
DOC2B	8447	broad.mit.edu	37	17	31199	31199	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	DOC2B	NM_003585	exon1	c.72delC	p.P24fs	GGGGCCGGGGCAC		6	2	0.33	8	0	0		6		0	0				
LRRC37BP1	147172	hgsc.bcm.edu	37	17	28960994	28960994	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	.	.	.	.	TTTCTTTTTTTTT		84	4	0.05	68	0	0				2	0	0.00			
ATP8B1	5205	mdanderson.org	37	18	55335769	55335769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_005603	exon19	c.C2101A	p.L701M	CTCCCAGGAGCTA		61	3	0.05	68	0	0				11	0	0.00			
TNFRSF11A	8792	mdanderson.org	37	18	60036584	60036584	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_003839	exon9	c.T1434C	p.L478L	GGGCCTTCCCCCT		16	2	0.13	30	1	0.0333333333				1	0	0.00			
SH3GL1	6455	mdanderson.org	37	19	4362649	4362649	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_003025	exon8	c.C813A	p.S271S	CCCGTTGGACTGC		48	3	0.06	42	0	0				74	0	0.00			
ZNRF4	148066	mdanderson.org	37	19	5455601	5455601	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_181710	exon1	c.G99A	p.L33L	TCAACTGCCCTCG		35	3	0.09	47	0	0				0	0				
GRAMD1A	57655	mdanderson.org	37	19	35504213	35504213	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_020895	exon8	c.G660A	p.E220E	CTCAGAGCTGGGC		53	3	0.06	67	0	0				181	0	0.00			
KIAA1211L	343990	mdanderson.org	37	2	99439368	99439368	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_207362	exon7	c.G1368A	p.P456P	AGGCGCCGGCCCT		18	2	0.11	18	0	0				2	0	0.00			
KCNJ3	3760	mdanderson.org	37	2	155555973	155555973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001260509	exon1	c.G686T	p.R229L	AGATTCGCTGCAA		15	2	0.13	10	0	0				0	0				
GBX2	2637	mdanderson.org	37	2	237076461	237076461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001485	exon1	c.C154A	p.P52T	CTACCGGCCGGTA		42	3	0.07	36	0	0				10	0	0.00			
ISM1	140862	broad.mit.edu;mdanderson.org	37	20	13260477	13260477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	ISM1	NM_080826	exon3	c.C575T	p.P192L	TCAACCCCCCCAG		56	5	0.09	54	0	0		41		0	0				
RRBP1	6238	bcgsc.ca	37	20	17640067	17640067	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	RRBP1	.	.	.	.	CCCCTCGGCCTTC		57	7	0.12	49	3	0.0612244898		157		130	0	0.00			
TTLL3	26140	broad.mit.edu	37	3	9852059	9852060	+	In_Frame_Ins	INS	-	-	GAT	rs34761997	bycluster;by1000genomes	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	TTLL3	NM_001025930	exon1	c.369_370insGAT	p.L123delinsLD	GGTCCTCGACCCC		11	6	0.55	6	0	0		51		1	0	0.00			
TKT	7086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53264545	53264545	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001258028	exon9	c.C1059G	p.S353S	GAAGGTGGAATTT		153	10	0.07	157	0	0				790	226	0.29			
SLC9C1	285335	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	111997684	111997684	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	SLC9A10,NS,carcinoma,-2,1	SLC9A10	NM_183061	exon4	c.C210A	p.A70A	TTGTATGGCGTTT		61	3	0.05	81	0	0		-2	1	1	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	T	rs121913506	bycluster	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446T	p.D816Y	GCCAGAGACATCA		83	10	0.12	87	0	0		0	932	378	205	0.54			
.	0	broad.mit.edu	37	4	68311813	68311814	+	RNA	INS	-	-	ACCGCCACCGCC	rs141262603	bycluster;by1000genomes	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	.	.	.	.	TACCGCTACCGCC		6	2	0.33	4	0	0				1	0	0.00			
BMP2K	55589	mdanderson.org	37	4	79792130	79792130	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_017593	exon11	c.A1425G	p.Q475Q	GCAGCAACAGCAA		26	4	0.15	18	0	0				7	0	0.00			
DSPP	1834	bcgsc.ca	37	4	88537285	88537285	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	DSPP	NM_014208	exon5	c.C3471T	p.S1157S	CAGCAGCGACAGC		150	7	0.05	129	2	0.015503876		174		0	0				
CENPE	1062	broad.mit.edu	37	4	104054015	104054015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	CENPE	NM_001813	exon42	c.C6759A	p.S2253R	CTTTATGCTAGGG		201	5	0.02	165	0	0		253		38	0	0.00			
NAA15	80155	broad.mit.edu	37	4	140264029	140264029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	NAA15	NM_057175	exon5	c.G452T	p.W151L	CATCATGGATTGG		190	4	0.02	188	0	0		88		61	0	0.00			
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34823512	34823512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001145525	exon17	c.T1574C	p.F525S	CACATTTCCACGA		126	12	0.10	106	0	0				44	22	0.50			
IQGAP2	10788	mdanderson.org	37	5	75969834	75969834	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	IQGAP2,NS,malignant_melanoma,+1,1	IQGAP2	NM_006633	exon26	c.C3267A	p.P1089P	ATTCCCCGATGCA		82	4	0.05	82	0	0		1	1	35	0	0.00			
SNCAIP	9627	broad.mit.edu	37	5	121758672	121758672	+	Silent	SNP	G	G	A	rs147854746	bycluster;by1000genomes	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	SNCAIP_ENST00000503116,NS,malignant_melanoma,+1,3	SNCAIP	NM_005460	exon4	c.G240A	p.S80S	GGTTTCGCCACTG		234	5	0.02	240	0	0		308	3	1	0	0.00			
OR2Y1	134083	mdanderson.org	37	5	180166238	180166238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001001657	exon1	c.C821A	p.A274D	AAAAGGGCAACAA		48	3	0.06	61	0	0				0	0				
HIST1H2BO	8348	mdanderson.org	37	6	27861278	27861278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_003527	exon1	c.A38G	p.K13R	CCAAAAAGGGCTC		54	3	0.06	86	0	0				3	0	0.00			
TSPYL4	23270	mdanderson.org	37	6	116574167	116574167	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_021648	exon1	c.C1005A	p.G335G	GTCTTGGCCTCGG		138	5	0.04	151	0	0				57	0	0.00			
IRF5	3663	mdanderson.org	37	7	128588820	128588820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001098629	exon9	c.G1493T	p.G498V	GAGCAGGCCTTGG		37	3	0.08	45	0	0				58	0	0.00			
PIGO	84720	mdanderson.org	37	9	35090665	35090665	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_032634	exon8	c.T2652C	p.P884P	AGTAAAAGGACCT		55	3	0.05	41	0	0				93	0	0.00			
PALM2-AKAP2	445815	mdanderson.org	37	9	112899361	112899361	+	Nonsense_Mutation	SNP	A	A	T	rs4978872	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_007203	exon8	c.A1537T	p.K513X	CTGCAGAAGCAGT		96	3	0.03	98	0	0				11	0	0.00			
SETX	23064	mdanderson.org	37	9	135152534	135152534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_015046	exon22	c.C6848A	p.T2283K	GCTTCTGTCTGTC		52	4	0.08	57	3	0.0526315789				68	0	0.00			
MRPS2	51116	mdanderson.org	37	9	138392585	138392585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_016034	exon1	c.G29A	p.R10Q	TGCCCCGAATACT		23	2	0.09	27	0	0				105	0	0.00			
OBP2A	29991	mdanderson.org	37	9	138441166	138441166	+	Missense_Mutation	SNP	T	T	C	rs3178142		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_014582	exon6	c.T503C	p.L168P	GCGTTCTCGAACA		58	4	0.07	61	0	0				0	0				
CXorf36	79742	mdanderson.org	37	X	45017126	45017126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_176819	exon3	c.C506A	p.A169D	GGGCTGGCCAGGC		35	3	0.09	36	0	0				7	0	0.00			
GRIPAP1	56850	broad.mit.edu	37	X	48839806	48839806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	GRIPAP1	NM_020137	exon16	c.C1319A	p.T440K	TGCAGCGTTTCCA		62	3	0.05	59	2	0.0338983051		128		133	0	0.00			
BCORL1	63035	broad.mit.edu	37	X	129148078	129148078	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	BCORL1	NM_021946	exon3	c.A1330C	p.T444P	GTGCTGACCCCGA		63	16	0.25	66	15	0.2272727273		213		7	0	0.00			
