Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
C1orf86	199990	broad.mit.edu	37	1	2116938	2116938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	C1orf86	NM_001146310	exon8	c.G472A	p.A158T	TGGGGGCGGGAGT		172	5	0.03	235	0	0		20		9	0	0.00			
CLCNKA	1187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16358965	16358965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_004070	exon18	c.G1873T	p.G625C	GCCAGGGGCTGCC		122	20	0.16	202	0	0				1	0	0.00			
.	0	broad.mit.edu	37	1	152096616	152096617	+	RNA	DEL	TA	TA	-	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	TA	TA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	.	.	.	.	TATGTGTATATAT		8	3	0.38	4	0	0				0	0				
NCSTN	23385	ucsc.edu	37	1	160319987	160319987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	NCSTN	NM_015331	exon5	c.A529G	p.S177G	GACTTTAGTTTCC		149	1	0.01	105	0	0		64		209	54	0.26			
NFASC	23114	hgsc.bcm.edu;broad.mit.edu	37	1	204939861	204939861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_015090	exon11	c.G1154T	p.G385V	TGAATGGGGAACC		96	4	0.04	116	0	0				0	0				
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	228468319	228468319	+	Silent	SNP	C	C	T	rs186845111	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001271223	exon35	c.C9306T	p.P3102P	TGACCCCGAGGCC		45	4	0.09	61	0	0				2	0	0.00			
PITRM1	10531	ucsc.edu	37	10	3193470	3193470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	PITRM1	NM_014889	exon15	c.A1707G	p.I569M	GACAGGTATGGTG		71	1	0.01	100	0	0		109		54	8	0.15			
CACNB2	783	mdanderson.org	37	10	18629869	18629869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_201590	exon1	c.G14T	p.R5L	ACAGACGCCTTAT		49	3	0.06	59	0	0				0	0				
EGR2	1959	mdanderson.org	37	10	64573455	64573455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001136177	exon3	c.C943A	p.L315M	GTGGCAGGTGGTG		16	2	0.13	27	0	0				3	0	0.00			
TRIM8	81603	mdanderson.org	37	10	104416978	104416978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_030912	exon6	c.C1523A	p.P508H	TCCCGCCCACACC		35	3	0.09	45	0	0				101	0	0.00			
PTDSS2	81490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	490432	490432	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_030783	exon12	c.G1314A	p.L438L	CACATTGAGGTAC		110	21	0.19	207	0	0				49	17	0.35			
FBXO3	26273	mdanderson.org	37	11	33780040	33780040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_012175	exon4	c.G466A	p.V156I	CAGGAACCACTAA		51	3	0.06	91	0	0				8	0	0.00			
C11orf48	79081	mdanderson.org	37	11	62437194	62437194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_024099	exon3	c.C232A	p.P78T	CATGGGGCAAATG		136	6	0.04	127	0	0				7	0	0.00			
NRXN2	9379	mdanderson.org	37	11	64418974	64418974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	NRXN2,NS,carcinoma,+2,1	NRXN2	NM_015080	exon14	c.C2671A	p.P891T	TGTAGGGCTGGCC		52	3	0.06	73	0	0		2	1	9	0	0.00			
AP5B1	91056	mdanderson.org	37	11	65545807	65545807	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_138368	exon2	c.C2157A	p.R719R	GGCAGGGCGGCCA		38	3	0.08	50	0	0				18	0	0.00			
LRTOMT	220074	mdanderson.org	37	11	71817127	71817127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001145308	exon5	c.C229T	p.R77W	GGGCTGCGGATCG		25	2	0.08	47	0	0				2	0	0.00			
DSCAML1	57453	mdanderson.org	37	11	117352815	117352815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_020693	exon12	c.C2602A	p.L868I	AGTTTAGCTCCTT		42	3	0.07	113	1	0.0088495575				0	0				
OR8D1	283159	mdanderson.org	37	11	124179874	124179874	+	Silent	SNP	A	A	G	rs200912007	by1000genomes	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001002917	exon1	c.T789C	p.P263P	ACTTGAAGGGGGC		50	3	0.06	105	1	0.0095238095	0			0	0				
CACNA1C	775	mdanderson.org	37	12	2774012	2774012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_199460	exon37	c.G4398T	p.W1466C	GGCCTGGCAGGAC		25	3	0.12	44	0	0				0	0				
CASC1	55259	broad.mit.edu	37	12	25343549	25343549	+	Splice_Site	DEL	T	T	-	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	CASC1	NM_001082972	exon2	c.194delA	p.K65fs	CATACCTTTTTTG		3662	7	0.00	440	0	0		146		0	0				
YAF2	10138	mdanderson.org	37	12	42631962	42631962	+	Silent	SNP	G	G	T	rs377532776	alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_005748	exon1	c.C21A	p.P7P	CCTGGTGGGGCTC		47	3	0.06	93	1	0.0107526882				8	0	0.00			
EBPL	84650	hgsc.bcm.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	EBPL,NS,carcinoma,0,9	EBPL	NM_032565	exon4	c.C565G	p.L189V	GTTCTAGCCATGA		74	4	0.05	131	2	0.0152671756		0	9	322	1	0.00			
DCT	1638	mdanderson.org	37	13	95121166	95121166	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	DCT_ENST00000446125,colon,carcinoma,0,5	DCT_ENST00000446125	NM_001129889	exon2	c.C429A	p.G143G	TAAGGCGCCCAAG		51	3	0.06	91	0	0		0	5	0	0				
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24620535	24620535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_017999	exon9	c.C1684T	p.H562Y	GATCGTCATGGCA		45	7	0.16	83	0	0				137	44	0.32			
TSHR	7253	mdanderson.org	37	14	81422036	81422036	+	Silent	SNP	G	G	A	rs377366847		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_000369	exon1	c.G12A	p.A4A	GCCGGCGGACTTG		26	2	0.08	42	0	0				1	0	0.00			
C14orf159	80017	broad.mit.edu	37	14	91671092	91671092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	C14orf159	NM_001102368	exon12	c.A1487G	p.K496R	AAGTCAAGGAGGC		66	3	0.05	70	0	0		57		58	0	0.00			
LOC727924	0	broad.mit.edu	37	15	22332492	22332492	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	.	.	.	.	TCTCTTATTACTA		80	3	0.04	90	1	0.0111111111				0	0				
CASC5	57082	broad.mit.edu	37	15	40915174	40915175	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	TA	TA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	CASC5	NM_170589	exon11	c.2790_2791del	p.930_931del	TGAAACTATTTTA		169	10	0.06	169	0	0		269		5	0	0.00			
RFX7	64864	hgsc.bcm.edu	37	15	56385646	56385646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_022841	exon9	c.C4280A	p.P1427Q	AATAATGGGTCAT		97	4	0.04	117	0	0				11	0	0.00			
UBL7	84993	mdanderson.org	37	15	74744664	74744664	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_201265	exon4	c.G360A	p.L120L	GCTGTGCAGGGCA		29	3	0.10	41	0	0				154	0	0.00			
RRN3P2	0	broad.mit.edu	37	16	29110438	29110438	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	.	.	.	.	AGTATCTTCAGAG		234	6	0.03	288	0	0				2	0	0.00			
ADCY7	113	mdanderson.org	37	16	50338324	50338324	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001114	exon10	c.G1422T	p.A474A	GGACGCGGCCCTG		24	2	0.08	41	0	0				20	0	0.00			
AMFR	267	mdanderson.org	37	16	56448166	56448166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001144	exon2	c.C346A	p.Q116K	TTACCTGTCTCTC		40	3	0.08	68	0	0				21	0	0.00			
CNOT1	23019	mdanderson.org	37	16	58577329	58577329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_206999	exon31	c.G4616T	p.C1539F	AAAAAACACACAG		132	17	0.13	138	10	0.0724637681				4	0	0.00			
KCTD19	146212	mdanderson.org	37	16	67333331	67333331	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	KCTD19,NS,carcinoma,0,1	KCTD19	NM_001100915	exon6	c.C921A	p.I307I	GCTCTCGATGCGA		39	3	0.08	95	0	0		0	1	1	0	0.00			
GLG1	2734	mdanderson.org	37	16	74516992	74516992	+	Nonsense_Mutation	SNP	G	G	T	rs370503981	alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001145667	exon10	c.C1602A	p.Y534X	CTCTGTGTATAAA		19	3	0.16	47	0	0				123	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		213	14	0.07	195	7	0.0358974359				58	16	0.28			
SREBF1	6720	mdanderson.org	37	17	17716712	17716712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001005291	exon19	c.A3274G	p.R1092G	GCCGCCTCAGACT		26	3	0.12	32	0	0				123	0	0.00			
SP6	80320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45925774	45925774	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001258248	exon2	c.T22G	p.S8A	CCAGAGAGCCGCA		45	15	0.33	64	0	0				2	0	0.00			
PDK2	5164	mdanderson.org	37	17	48186690	48186690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_002611	exon10	c.G1009T	p.A337S	CTCTACGCCAAGT		43	3	0.07	53	0	0				28	0	0.00			
CACNA1G	8913	mdanderson.org	37	17	48638948	48638948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_198387	exon1	c.G128T	p.S43I	CGGGCAGCGCGGA		13	2	0.15	14	0	0				1	0	0.00			
MRC2	9902	mdanderson.org	37	17	60758222	60758222	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_006039	exon17	c.G2535T	p.T845T	CTCCACGTGGGCG		35	3	0.09	52	0	0				38	0	0.00			
HGS	9146	mdanderson.org	37	17	79660778	79660778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_004712	exon10	c.G836T	p.R279M	AGGAGAGGCTGGT		21	2	0.10	35	0	0				84	0	0.00			
CCDC57	284001	mdanderson.org	37	17	80129588	80129588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_198082	exon12	c.C1871A	p.T624K	GTCTCTGTCGAGG		41	3	0.07	31	0	0				8	0	0.00			
MYOM1	8736	mdanderson.org	37	18	3173970	3173970	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_003803	exon8	c.C1140A	p.R380R	GTGGAAGCGAGTC		42	3	0.07	64	0	0				2	0	0.00			
ANKRD12	23253	mdanderson.org	37	18	9204531	9204531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_015208	exon4	c.G293T	p.R98M	CTTACAGGACATA		23	2	0.09	51	0	0				1	0	0.00			
TNPO2	30000	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12816532	12816532	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	TNPO2	NM_013433	exon15	c.C1719G	p.L573L	GTCCTTGAGCTCA		78	7	0.09	97	1	0.0103092784		108		128	16	0.13			
ILVBL	10994	mdanderson.org	37	19	15233976	15233976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_006844	exon4	c.C416T	p.A139V	GACTGAGCCATCT		29	3	0.10	55	0	0				36	0	0.00			
.	0	broad.mit.edu	37	19	20262850	20262850	+	RNA	DEL	T	T	-	rs58259738	bycluster	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	.	.	.	.	TTTTTCTTTTTTT		7	3	0.43	9	0	0				0	0				
ATP4A	495	mdanderson.org	37	19	36041523	36041523	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_000704	exon22	c.C3102A	p.Y1034X	CTAATAGTAGAGT		32	3	0.09	60	0	0				2	0	0.00			
IGFLR1	79713	mdanderson.org	37	19	36230690	36230690	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_024660	exon4	c.C642A	p.S214S	ATGCGAGGAGGAA		45	3	0.07	62	0	0				101	0	0.00			
PRR19	284338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42814216	42814216	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_199285	exon2	c.C480G	p.A160A	ACAGGCCTTCCCC		38	5	0.13	77	0	0				15	3	0.20			
PPP1R12C	54776	mdanderson.org	37	19	55606890	55606890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_017607	exon10	c.C1309T	p.R437W	CTGTCCGCCTTTC		76	4	0.05	104	0	0				180	0	0.00			
ZNF628	89887	mdanderson.org	37	19	55995439	55995439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_033113	exon3	c.G2879T	p.G960V	CTCCTGGGCTGAC		37	3	0.08	44	0	0				29	0	0.00			
ZNF814	730051	bcgsc.ca	37	19	58385788	58385788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	ZNF814	NM_001144989	exon3	c.T970C	p.Y324H	ATTCATAAGGTCT		118	8	0.07	103	0	0		93		8	0	0.00			
TAF1B	9014	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10059215	10059215	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_005680	exon13	c.C1317T	p.D439D	TGTCGACAAACCA		85	9	0.11	74	0	0				69	15	0.22			
NPAS2	4862	mdanderson.org	37	2	101598761	101598761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_002518	exon16	c.G1551T	p.Q517H	CCTGCAGGCCAAT		42	3	0.07	42	0	0				4	0	0.00			
SMPD4	55627	mdanderson.org	37	2	130910946	130910946	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_017951	exon18	c.C2088A	p.P696P	GCAGTCGGGGAGT		47	3	0.06	88	0	0				191	0	0.00			
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166532964	166532964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001172173	exon6	c.C551A	p.A184D	GAAGAGCTCTGCT		113	21	0.19	114	0	0				1	0	0.00			
CASP8	841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202137405	202137405	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001080125	exon4	c.G633A	p.L211L	CATCCTGGGAGAA		79	13	0.16	89	0	0				53	12	0.23			
FRG1B	284802	hgsc.bcm.edu	37	20	29628491	29628491	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	.	.	.	.	AATCCCATAGTTG		56	5	0.09	67	0	0				4	0	0.00			
SOGA1	140710	bcgsc.ca	37	20	35422416	35422416	+	Missense_Mutation	SNP	G	G	T	rs377708865	alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	SOGA1	NM_080627	exon14	c.C4069A	p.R1357S	CGGAGCGCATGGC		55	4	0.07	100	0	0		136		16	0	0.00			
STK4	6789	mdanderson.org	37	20	43703740	43703740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	STK4,rectum,carcinoma,0,3	STK4	NM_006282	exon11	c.C1387T	p.R463W	GAGATCCGGCAGA		51	3	0.06	71	0	0		0	3	14	0	0.00			
ZNF217	7764	bcgsc.ca	37	20	52192819	52192819	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	ZNF217	NM_006526	exon3	c.G2484A	p.G828G	TTGGACCCCCACA		53	4	0.08	64	0	0		227		164	0	0.00			
PMEPA1	56937	mdanderson.org	37	20	56227187	56227187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_020182	exon4	c.C786A	p.H262Q	TGTGTGGTGGAGC		22	3	0.14	42	0	0				32	0	0.00			
LAMA5	3911	mdanderson.org	37	20	60889717	60889717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_005560	exon61	c.C8261T	p.A2754V	AGGTCGGCAAGAT		20	2	0.10	41	0	0				115	0	0.00			
COL9A3	1299	mdanderson.org	37	20	61468455	61468455	+	Missense_Mutation	SNP	G	G	T	rs190167637	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001853	exon30	c.G1624T	p.A542S	TTAGCCGCGCACC		24	3	0.13	26	0	0				32	0	0.00			
RUNX1	861	broad.mit.edu;ucsc.edu;mdanderson.org	37	21	36164782	36164782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	RUNX1	NM_001754	exon9	c.G1093A	p.G365S	CGATGCCGATGCC		24	3	0.13	60	0	0		687		26	8	0.31			
KRTAP10-3	386682	mdanderson.org	37	21	45978322	45978322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_198696	exon1	c.T277C	p.S93P	AGGGGGAGGATGT		20	4	0.20	21	3	0.1428571429				0	0				
TPTEP1	0	broad.mit.edu	37	22	17118309	17118309	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	.	.	.	.	CCATGTAAAAAAA		12	4	0.33	6	0	0				0	0				
ARVCF	421	mdanderson.org	37	22	19965526	19965526	+	Silent	SNP	C	C	T	rs373349214	alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001670	exon8	c.G1653A	p.L551L	GGCATGCAGGAGC		43	3	0.07	66	0	0				22	0	0.00			
OGG1	4968	mdanderson.org	37	3	9792839	9792839	+	Silent	SNP	G	G	T	rs370483342	alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_016821	exon2	c.G348T	p.V116V	TTCCGTGGACTCC		113	5	0.04	160	0	0				42	0	0.00			
RASSF1	11186	mdanderson.org	37	3	50368037	50368037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_170714	exon6	c.C1010A	p.A337D	TGCAGGGCCTCTT		32	3	0.09	54	1	0.0185185185				69	0	0.00			
FHIT	2272	mdanderson.org	37	3	59908140	59908140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_002012	exon8	c.C280A	p.H94N	GAACGTGCTGAAA		53	3	0.06	64	0	0				0	0				
GTF2E1	2960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120469513	120469513	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_005513	exon2	c.C114G	p.I38M	CTTGATCAGGAAC		113	13	0.12	140	0	0				48	13	0.27			
FBXO40	51725	mdanderson.org	37	3	121340831	121340831	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_016298	exon3	c.G555T	p.L185L	TGGTCTGTCAGCA		75	4	0.05	94	0	0				0	0				
ACAD9	28976	mdanderson.org	37	3	128623311	128623311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_014049	exon11	c.G1112T	p.G371V	AACCTGGCTTTCC		49	3	0.06	53	0	0				42	0	0.00			
HES1	3280	broad.mit.edu;bcgsc.ca	37	3	193854208	193854208	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	HES1	NM_005524	exon1	c.G39A	p.P13P	GTCCCCGGTGGCT		207	15	0.07	293	1	0.0034129693		23		7	0	0.00			
AFAP1	60312	mdanderson.org	37	4	7787938	7787938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001134647	exon12	c.C1513A	p.P505T	TGCACGGGACATC		47	3	0.06	64	0	0				23	0	0.00			
SHROOM3	57619	mdanderson.org	37	4	77676329	77676329	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_020859	exon7	c.G4693T	p.E1565X	GATCCCGAGGGGC		52	3	0.06	60	0	0				21	0	0.00			
INPP4B	8821	mdanderson.org	37	4	143129612	143129612	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_003866	exon15	c.G1038A	p.L346L	TCTTTGCAGATGT		46	3	0.07	61	0	0				4	0	0.00			
FAM160A1	729830	mdanderson.org	37	4	152487469	152487469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001109977	exon4	c.G58T	p.V20F	CAGGGAGTTGACC		38	3	0.08	58	0	0				6	0	0.00			
HCN1	348980	broad.mit.edu	37	5	45353277	45353277	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	HCN1,NS,carcinoma,0,1	HCN1	NM_021072	exon5	c.C1302A	p.Y434X	TTCATAGTAATCA		59	3	0.05	91	0	0		298	1	0	0				
ATP6AP1L	92270	mdanderson.org	37	5	81614037	81614037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001017971	exon4	c.C593T	p.A198V	ACACAGCCGAAGA		31	4	0.13	62	0	0				9	0	0.00			
BRD8	10902	mdanderson.org	37	5	137502367	137502367	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_006696	exon11	c.C1056A	p.T352T	AGGTGTGGTGAAC		45	3	0.07	79	0	0				66	0	0.00			
PCDHB13	56123	mdanderson.org	37	5	140595252	140595252	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	PCDHB13,NS,carcinoma,+1,1	PCDHB13	NM_018933	exon1	c.G1557T	p.L519L	GTCTCTGGACTAC		38	3	0.08	48	0	0		1	1	0	0				
SCGB3A2	117156	mdanderson.org	37	5	147261032	147261032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_054023	exon2	c.G79T	p.V27L	AACAAAGTGCCCC		45	3	0.07	91	0	0				295	0	0.00			
HAVCR2	84868	ucsc.edu;bcgsc.ca	37	5	156535962	156535962	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	HAVCR2	NM_032782	exon1	c.G33C	p.L11L	CAGCAGCAGGACA		39	4	0.10	80	0	0		56		8	0	0.00			
EEF1E1-MUTED	0	hgsc.bcm.edu;bcgsc.ca	37	6	8090389	8090389	+	RNA	SNP	A	A	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	.	.	.	.	TACAGAAAAAAAG		110	21	0.19	125	0	0				19	3	0.16			
BAG6	7917	mdanderson.org	37	6	31610631	31610631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_004639	exon14	c.T1928C	p.L643P	CCTTGGAGAAAGG		19	2	0.11	27	0	0				106	0	0.00			
ZBTB9	221504	mdanderson.org	37	6	33423539	33423539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_152735	exon2	c.A662G	p.D221G	AAGATGATGATGA		37	3	0.08	70	0	0				37	0	0.00			
MDN1	23195	mdanderson.org	37	6	90385226	90385226	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_014611	exon78	c.C12718A	p.R4240R	AGCGCCGCTGTCG		33	3	0.09	49	0	0				50	0	0.00			
SEC63	11231	mdanderson.org	37	6	108224139	108224139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_007214	exon12	c.C1118A	p.A373D	TGAACGGCCATCT		80	4	0.05	87	0	0				165	0	0.00			
GLI3	2737	broad.mit.edu	37	7	42063136	42063136	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	GLI3	NM_000168	exon10	c.C1428A	p.V476V	ATAGATGACTTCA		161	5	0.03	179	0	0		312		2	0	0.00			
SRRT	51593	mdanderson.org	37	7	100481800	100481800	+	Missense_Mutation	SNP	T	T	G	rs201173432		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001128853	exon6	c.T697G	p.F233V	GGCTGGTTTGATA		80	13	0.16	91	11	0.1208791209				183	22	0.12			
SND1	27044	mdanderson.org	37	7	127631040	127631040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_014390	exon16	c.G1710T	p.L570F	AGGCTTGGTGCAG		44	3	0.07	55	0	0				471	1	0.00			
TMEM213	155006	mdanderson.org	37	7	138487805	138487805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001085429	exon3	c.G315T	p.L105F	GGACTTGCAAGCG		22	2	0.09	21	0	0				0	0				
ADCK2	90956	mdanderson.org	37	7	140373183	140373183	+	Missense_Mutation	SNP	G	G	T	rs151015312	alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_052853	exon1	c.G53T	p.C18F	TGAGGTGCTTCGA		32	3	0.09	70	0	0				14	0	0.00			
ADAM2	2515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39695678	39695678	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	ADAM2,NS,carcinoma,0,2	ADAM2	NM_001464	exon1	c.C27T	p.S9S	GAGCCCGCTGAGC		121	26	0.21	181	0	0		0	2	0	0				
.	100419423	bcgsc.ca	37	8	47609548	47609548	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	.	.	.	.	GTTTAAGATTTTA		29	6	0.21	30	0	0				0	0				
KCNV1	27012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110986360	110986360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	KCNV1	NM_014379	exon1	c.C258A	p.S86R	CAGAGGGCTGGGC		50	5	0.10	56	0	0		101		1	0	0.00			
IFNA7	3444	ucsc.edu	37	9	21202073	21202073	+	Missense_Mutation	SNP	C	C	G	rs76903863	bycluster;byfrequency	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	IFNA7	NM_021057	exon1	c.G92C	p.S31T	CGCAGGCTGTGGG		70	8	0.11	114	7	0.0614035088		24		0	0				
LRRC19	64922	bcgsc.ca	37	9	26996466	26996466	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	LRRC19	NM_022901	exon4	c.C627A	p.P209P	GCTGTTGGGGTAG		62	4	0.06	100	0	0		24		0	0				
SPATA31D1	389763	broad.mit.edu	37	9	84608661	84608661	+	Silent	SNP	G	G	A	rs375859502		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	FAM75D4,NS,carcinoma,+1,2	.	NM_001001670	exon4	c.G3276A	p.P1092P	GCCCCCGCCACAC		34	3	0.09	44	0	0			2	0	0				
NINJ1	4814	mdanderson.org	37	9	95888707	95888707	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_004148	exon2	c.C289T	p.L97L	TGAGCAGCACCCC		41	3	0.07	60	0	0				58	0	0.00			
CRB2	286204	mdanderson.org	37	9	126139289	126139289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_173689	exon13	c.G3806T	p.R1269L	GGGCCCGGCTGGA		48	3	0.06	75	0	0				3	0	0.00			
CELP	0	broad.mit.edu	37	9	135962465	135962465	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	.	.	.	.	TGCCCCTGTGCCC		7	3	0.43	4	0	0				1	1	1.00			
CAMSAP1	157922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138719406	138719406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_015447	exon8	c.G1070T	p.S357I	CGGCTGCTCTTCT		34	11	0.32	37	0	0				14	11	0.79			
RBM10	8241	hgsc.bcm.edu	37	X	47030570	47030672	+	Frame_Shift_Del	DEL	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	-	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	RBM10	NM_001204468	exon4	c.539_627del	p.180_209del	GGAGGAGGAGGAG		30	0	0.00	48	0	0		117		7	0	0.00			
GNL3L	54552	hgsc.bcm.edu	37	X	54578731	54578731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001184819	exon13	c.G1188T	p.K396N	CGGGAAGATCAGC		103	6	0.06	119	0	0				29	0	0.00			
DLG3	1741	bcgsc.ca	37	X	69665375	69665375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	DLG3	NM_021120	exon1	c.G324T	p.E108D	GCCAGAGTGCACC		35	4	0.11	39	0	0		100		0	0				
CENPI	2491	mdanderson.org	37	X	100383722	100383722	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_006733	exon11	c.C1092A	p.G364G	GATGGGCTCAGTG		41	3	0.07	33	0	0				10	0	0.00			
RGAG1	57529	mdanderson.org	37	X	109694903	109694903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_020769	exon3	c.C1058T	p.A353V	TGACGGCCCTACC		51	3	0.06	53	0	0				2	0	0.00			
KDM5D	8284	bcgsc.ca	37	Y	21878489	21878489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	KDM5D	NM_001146705	exon15	c.C1922A	p.A641D	CAGTCAGCAGTAC		52	4	0.08	103	0	0		40		10	0	0.00			
PLCD3	113026	mdanderson.org	37	17	43194020	43194020	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	PLCD3_ENST00000322765,NS,carcinoma,0,2	PLCD3_ENST00000322765	.	.	.	.	CTCCTCGGGATTT		47	3	0.06	63	0	0		0	2	30	0	0.00			
