Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CROCCP3	0	broad.mit.edu	37	1	16812950	16812950	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	CAGGTCACTTTGC		57	8	0.14	51	1	0.0196078431				5	1	0.20			
LPHN2	23266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	82436031	82436031	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_012302	exon14	c.T2716A	p.F906I	CTACACTTTTTCT		85	12	0.14	110	0	0				7	0	0.00			
WDR63	126820	mdanderson.org	37	1	85573833	85573833	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_145172	exon15	c.G1671T	p.L557L	GCATCTGGATCTC		49	3	0.06	40	0	0				0	0				
SPRR1B	6699	broad.mit.edu;mdanderson.org	37	1	153005016	153005016	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	SPRR1B,NS,carcinoma,0,1	SPRR1B	NM_003125	exon2	c.C195T	p.C65C	GCCATGCCACCCC		80	4	0.05	89	0	0		18	1	0	0				
OR10J1	26476	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	159410279	159410279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	OR10J1,NS,carcinoma,+1,1	OR10J1	NM_012351	exon1	c.G731A	p.R244Q	AGGGCCGGAAGAA		105	6	0.06	108	1	0.0092592593		1	1	0	0				
HLX	3142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	221054636	221054636	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_021958	exon2	c.C693G	p.N231K	CATTAACGAGGCT		118	18	0.15	147	0	0				15	0	0.00			
ARID4B	51742	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235345007	235345007	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	ARID4B	NM_016374	exon20	c.G3227C	p.G1076A	AGCTCCCCAGCAA		59	10	0.17	86	1	0.011627907		142		63	17	0.27			
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70412305	70412305	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_030625	exon6	c.C4415G	p.T1472S	TGTACACCGGTAA		66	12	0.18	72	0	0				69	23	0.33			
LGI1	9211	broad.mit.edu	37	10	95553006	95553006	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	LGI1	NM_005097	exon7	c.A737G	p.N246S	ATTTGAATGATGA		90	4	0.04	73	0	0		69		0	0				
MKI67	4288	broad.mit.edu;mdanderson.org	37	10	129905196	129905196	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	MKI67	NM_002417	exon13	c.C4908A	p.S1636S	CCCCAGGGATGTC		156	6	0.04	139	0	0		363		81	0	0.00			
RASSF7	8045	mdanderson.org	37	11	561874	561874	+	Missense_Mutation	SNP	G	G	A	rs371827786		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001143994	exon2	c.G106A	p.A36T	GTCATCGCACTAG		39	3	0.08	41	0	0				30	0	0.00			
SLC25A22	79751	mdanderson.org	37	11	791955	791955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001191060	exon10	c.C932A	p.A311E	GACTCCGCGATGC		22	2	0.09	22	0	0				93	0	0.00			
TSPAN4	7106	mdanderson.org	37	11	864454	864454	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001025237	exon5	c.G273T	p.L91L	GCTGCTGCTGGTG		44	3	0.07	40	0	0				212	0	0.00			
DCHS1	8642	mdanderson.org	37	11	6653426	6653426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_003737	exon6	c.C3317A	p.S1106Y	TCCTCAGACAAGC		49	3	0.06	78	0	0				17	0	0.00			
ABCC8	6833	bcgsc.ca	37	11	17464362	17464362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	ABCC8	NM_000352	exon10	c.A1535G	p.Y512C	CAGGCGTACAGCT		38	0	0.00	56	0	0		170		0	0				
BCL9L	283149	mdanderson.org	37	11	118771819	118771819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_182557	exon6	c.C2633A	p.P878H	CTCATGGGCATTG		47	3	0.06	62	0	0				13	0	0.00			
SLC37A2	219855	mdanderson.org	37	11	124951662	124951662	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_198277	exon9	c.G745T	p.E249X	CCAGCTGAGAACC		37	3	0.08	71	0	0				19	0	0.00			
KRT74	121391	mdanderson.org	37	12	52967458	52967458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_175053	exon1	c.G104T	p.C35F	GCTGCACAGTAAG		46	3	0.07	67	0	0				0	0				
ANKS1B	56899	broad.mit.edu;mdanderson.org	37	12	100200303	100200303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	ANKS1B	NM_152788	exon4	c.C548A	p.A183E	GGATGTGCACTGA		113	5	0.04	149	0	0		180		0	0				
UBE3B	89910	hgsc.bcm.edu	37	12	109972569	109972569	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	UBE3B,colon,carcinoma,0,1	UBE3B	NM_130466	exon28	c.G3189T	p.T1063T	GAACACGGGCTTT		65	3	0.05	61	0	0		0	1	105	0	0.00			
MED13L	23389	mdanderson.org	37	12	116420941	116420941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	MED13L,NS,carcinoma,0,1	MED13L	NM_015335	exon21	c.T4936C	p.S1646P	CCTGTGAGGGCTG		57	3	0.05	74	0	0		0	1	36	0	0.00			
PXN	5829	mdanderson.org	37	12	120659472	120659472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001243756	exon6	c.C785A	p.A262D	CTGGTGGCAGAGG		14	2	0.14	26	0	0				135	0	0.00			
ANKRD20A19P	0	broad.mit.edu	37	13	24519964	24519964	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	TTGACAGCCGCCC		51	3	0.06	56	0	0				0	0				
STARD13	90627	mdanderson.org	37	13	33701523	33701523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_178006	exon6	c.C1909A	p.H637N	AGCCGTGCTTGTT		21	2	0.10	27	0	0				6	0	0.00			
PROZ	8858	mdanderson.org	37	13	113813044	113813044	+	Missense_Mutation	SNP	G	G	T	rs1885956	bycluster;byhapmap;alternate_allele	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001256134	exon1	c.G70T	p.A24S	CCCTCAGGTAGGC		29	3	0.10	23	0	0				0	0				
CUL4A	8451	bcgsc.ca	37	13	113898807	113898807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	CUL4A	NM_001008895	exon12	c.A1312T	p.I438F	ATCATGATCCTGT		150	0	0.00	213	0	0		50		68	0	0.00			
.	28444	bcgsc.ca	37	14	106691797	106691797	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	TATATGTAACTAC		195	0	0.00	157	0	0				159	4	0.03			
SLC12A6	9990	mdanderson.org	37	15	34547512	34547512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_133647	exon7	c.C827A	p.T276N	AATGTGGTACCAA		47	3	0.06	45	0	0				20	0	0.00			
ATP8B4	79895	broad.mit.edu	37	15	50223331	50223331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	ATP8B4	NM_024837	exon16	c.A1627G	p.R543G	ACATCCTTTTTCT		165	3	0.02	148	0	0		173		1	0	0.00			
USP8	9101	mdanderson.org	37	15	50733583	50733583	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001128610	exon3	c.G142T	p.E48X	ACAGCAGAAGAAT		45	3	0.07	42	0	0				57	0	0.00			
HERC1	8925	mdanderson.org	37	15	63958659	63958659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_003922	exon41	c.C8219A	p.P2740Q	CTGCTTGGGTCTG		51	3	0.06	56	0	0				17	0	0.00			
HCN4	10021	mdanderson.org	37	15	73660063	73660063	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_005477	exon1	c.G549T	p.S183S	GTCCACCGAGGGC		16	2	0.13	16	0	0				4	0	0.00			
PKD1	5310	mdanderson.org	37	16	2143982	2143982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001009944	exon36	c.C10651A	p.P3551T	AGGCCGGCAGCAG		16	2	0.13	31	0	0				27	0	0.00			
GLYR1	84656	mdanderson.org	37	16	4855285	4855285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_032569	exon16	c.C1614A	p.D538E	AGACTGGTCCAGC		50	3	0.06	48	0	0				105	0	0.00			
GPRC5B	51704	mdanderson.org	37	16	19871856	19871856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_016235	exon4	c.C1178A	p.A393D	GGCGGAGCAGTTG		53	3	0.06	62	0	0				140	0	0.00			
SMPD3	55512	mdanderson.org	37	16	68405129	68405129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_018667	exon3	c.C956A	p.A319D	CTGTTGGCACCTG		35	3	0.09	34	0	0				1	0	0.00			
ZC3H18	124245	broad.mit.edu	37	16	88664670	88664670	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	ZC3H18,NS,carcinoma,+1,1	ZC3H18	NM_144604	exon4	c.A773C	p.D258A	AAGCCGACCCCTT		45	14	0.31	54	9	0.1666666667		90	1	84	6	0.07			
C1QBP	708	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	5336638	5336638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001212	exon5	c.C674T	p.T225I	TTGAGTGTATAAT		130	11	0.08	136	0	0				1771	328	0.19			
ANKRD13B	124930	mdanderson.org	37	17	27936112	27936112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_152345	exon6	c.G574T	p.A192S	ACAAGCGCCGTGG		44	3	0.07	34	0	0				0	0				
RHOT1	55288	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	30536465	30536465	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	RHOT1	NM_001033568	exon19	c.1835+1G>T	.	TGCTTTGTAAGTT		34	4	0.12	31	0	0		69		0	0				
ERBB2	2064	broad.mit.edu	37	17	37884152	37884152	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	ERBB2	NM_004448	exon27	c.A3623C	p.H1208P	AGCCCCACCCTCC		123	10	0.08	101	6	0.0594059406		429		71	2	0.03			
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48821082	48821082	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_006107	exon6	c.T442A	p.S148T	TTAGGGTCTGAAG		135	24	0.18	139	0	0				463	107	0.23			
GGA3	23163	mdanderson.org	37	17	73236094	73236094	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_138619	exon13	c.C1359A	p.S453S	GCTTGAGGAGGGG		43	3	0.07	43	0	0				112	0	0.00			
DOHH	83475	mdanderson.org	37	19	3496779	3496779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	DOHH,NS,carcinoma,+2,1	DOHH	NM_001145165	exon2	c.C34A	p.Q12K	GCGTCTGCCCGAT		33	3	0.09	18	0	0		2	1	95	0	0.00			
SAFB	6294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5667118	5667118	+	Missense_Mutation	SNP	G	G	T	rs201604799	by1000genomes;alternate_allele	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_002967	exon18	c.G2396T	p.G799V	GCTGGGGGGGCTA		126	25	0.20	124	0	0				434	134	0.31			
SLC25A23	79085	mdanderson.org	37	19	6442129	6442129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_024103	exon10	c.C1264A	p.L422I	GACGTAGCAGACC		44	3	0.07	43	0	0				48	0	0.00			
CAMSAP3	57662	mdanderson.org	37	19	7677030	7677030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001080429	exon13	c.G1732T	p.V578L	AAGGCGGTGGCTT		39	3	0.08	34	0	0				48	0	0.00			
CBLC	23624	mdanderson.org	37	19	45284237	45284237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_012116	exon2	c.G429T	p.K143N	GGGAAAGTACTGT		48	3	0.06	55	0	0				4	0	0.00			
SSC5D	284297	mdanderson.org	37	19	56028595	56028595	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001144950	exon14	c.C2952T	p.S984S	AGGTTCCCCGAGG		22	2	0.09	9	0	0				0	0				
ANKRD36BP2	0	broad.mit.edu	37	2	89088242	89088243	+	RNA	INS	-	-	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	TTTTTTCTTTTTT		7	3	0.43	7	0	0				0	0				
FSIP2	401024	broad.mit.edu	37	2	186680198	186680198	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	FSIP2	NM_173651	exon19	c.G20693T	p.G6898V	CTACTGGGTATAT		310	5	0.02	307	0	0		251		0	0				
NBEAL1	65065	broad.mit.edu	37	2	204000666	204000666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	NBEAL1	NM_001114132	exon27	c.G3993T	p.L1331F	GAGTTTGGAGGAT		303	6	0.02	304	0	0		266		0	0				
TMEM74B	55321	mdanderson.org	37	20	1164436	1164436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_018354	exon1	c.G10A	p.A4T	CCTGTGCTGGTGG		35	4	0.11	44	1	0.0227272727				4	0	0.00			
PYGB	5834	mdanderson.org	37	20	25262727	25262727	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_002862	exon12	c.A1462C	p.T488P	GGCATCACCCCCC		49	19	0.39	40	7	0.175				980	246	0.25			
DLGAP4	22839	broad.mit.edu	37	20	35075236	35075236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	DLGAP4,colon,carcinoma,+1,1	DLGAP4	NM_014902	exon6	c.G1544T	p.R515L	ACCTGCGTGCCAT		107	4	0.04	122	0	0		111	1	20	0	0.00			
LAMA5	3911	mdanderson.org	37	20	60903333	60903333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_005560	exon35	c.C4616A	p.T1539K	GGGTCTGTGAGCT		36	3	0.08	69	0	0				65	0	0.00			
SREBF2	6721	mdanderson.org	37	22	42293166	42293166	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_004599	exon14	c.2605+1G>T	.	CCCTGGGTAAGCA		41	3	0.07	42	0	0				4	0	0.00			
FBLN2	2199	mdanderson.org	37	3	13655520	13655520	+	Missense_Mutation	SNP	C	C	T	rs148310871	bycluster;by1000genomes	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	FBLN2_ENST00000492059,colon,carcinoma,-1,1	FBLN2_ENST00000492059	NM_001998	exon5	c.C1585T	p.R529W	CGCGTGCGGGCCG		42	3	0.07	32	0	0	0	-1	1	32	0	0.00			
ACVR2B	93	bcgsc.ca	37	3	38518867	38518867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	ACVR2B	NM_001106	exon2	c.C142T	p.R48C	CTGGAGCGCTGCG		61	0	0.00	80	0	0		88		13	0	0.00			
TKT	7086	mdanderson.org	37	3	53275169	53275169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001135055	exon3	c.C318A	p.D106E	GTCCAAGTCGGAG		36	3	0.08	16	0	0				1038	0	0.00			
MAGI1	9223	hgsc.bcm.edu	37	3	65425594	65425594	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	MAGI1_ENST00000402939,NS,carcinoma,0,9	MAGI1_ENST00000402939	NM_001033057	exon9	c.G1230A	p.Q410Q	CTGTTGCTGCTGC		40	10	0.25	28	1	0.0357142857		0	9	7	0	0.00			
MED12L	116931	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	151093929	151093929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	MED12L	NM_053002	exon26	c.G3875A	p.C1292Y	TTATCTGTTATCC		78	12	0.15	66	1	0.0151515152		271		7	0	0.00			
DSPP	1834	bcgsc.ca	37	4	88536118	88536118	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	DSPP	NM_014208	exon5	c.T2304C	p.S768S	CAGCAGTGATAGC		85	1	0.01	88	0	0		174		0	0				
SEC24B	10427	mdanderson.org	37	4	110460718	110460718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_006323	exon24	c.G3694T	p.D1232Y	TCCAGAGATGAGA		40	3	0.08	67	0	0				47	0	0.00			
PLEKHG4B	153478	mdanderson.org	37	5	143516	143516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_052909	exon3	c.G641T	p.R214I	ATGGCAGAGCAGT		33	3	0.09	45	0	0				26	0	0.00			
BRD9	65980	mdanderson.org	37	5	884147	884147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	BRD9_ENST00000467963,NS,carcinoma,+1,4	BRD9_ENST00000467963	NM_023924	exon8	c.C872A	p.T291K	CTGTCCGTCAAGC		52	3	0.06	48	0	0		1	4	72	0	0.00			
FBN2	2201	mdanderson.org	37	5	127623058	127623058	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001999	exon54	c.C6822A	p.S2274S	TTCATAGGACCCA		52	3	0.06	66	0	0				0	0				
DEK	7913	bcgsc.ca	37	6	18264096	18264096	+	Missense_Mutation	SNP	C	C	G	rs147127829	bycluster;byfrequency;by1000genomes	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	DEK	NM_003472	exon2	c.G123C	p.E41D	CTCCTCCTCGTCG		103	4	0.04	113	0	0		31		144	0	0.00			
HIST1H2AI	8329	broad.mit.edu	37	6	27776148	27776148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	HIST1H2AI	NM_003509	exon1	c.C161T	p.A54V	TGGCGGCGGTGCT		137	14	0.10	131	0	0		9		41	7	0.17			
COL11A2	1302	mdanderson.org	37	6	33140407	33140407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_080680	exon39	c.C2798T	p.A933V	TCTCCTGCTGCTC		40	3	0.08	33	0	0				0	0				
B3GALT4	8705	bcgsc.ca	37	6	33245604	33245604	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	B3GALT4	NM_003782	exon1	c.G408T	p.G136G	CCAGGGGGATATC		40	0	0.00	44	0	0		30		16	0	0.00			
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33652420	33652420	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_002224	exon38	c.C5092G	p.R1698G	CAGAACCGGAAGT		98	20	0.20	121	0	0				137	31	0.23			
ZNF76	7629	mdanderson.org	37	6	35259494	35259494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_003427	exon9	c.A911G	p.N304S	ATAAGAATCACGT		18	3	0.17	26	0	0				60	0	0.00			
GTF2IRD2P1	0	broad.mit.edu	37	7	72669366	72669367	+	RNA	INS	-	-	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	CCCACAATTTTTT		6	3	0.50	5	0	0				0	0				
ANKIB1	54467	mdanderson.org	37	7	91991528	91991528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_019004	exon10	c.G1427T	p.C476F	AGCCTTGTGACTG		52	3	0.06	37	0	0				73	0	0.00			
ATP5J2-PTCD1	100526740	mdanderson.org	37	7	99032854	99032854	+	Silent	SNP	C	C	A	rs373379334	alternate_allele	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001198879	exon3	c.G159T	p.V53V	GAGTCTCACGAAG		14	2	0.14	16	0	0				77	0	0.00			
FLNC	2318	broad.mit.edu;ucsc.edu	37	7	128490068	128490068	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	FLNC	NM_001458	exon31	c.A5238G	p.E1746E	CTCTGAAGTGCCA		16	4	0.25	13	0	0		339		9	0	0.00			
KCP	375616	broad.mit.edu	37	7	128548294	128548316	+	RNA	DEL	AAGAAAGAAAGAAGAAAGAAAGA	AAGAAAGAAAGAAGAAAGAAAGA	-	rs139059512	by1000genomes;alternate_allele	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	AAGAAAGAAAGAAGAAAGAAAGA	AAGAAAGAAAGAAGAAAGAAAGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	KCP	.	.	.	.	GAAAGGAAGAAAG		5	0	0.00	6	0	0		16		0	0				
DUSP4	1846	mdanderson.org	37	8	29207576	29207576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001394	exon1	c.C220T	p.R74W	GCCGCCGCACGAT		43	3	0.07	33	0	0				10	0	0.00			
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103277378	103277378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_015902	exon53	c.G7551T	p.R2517S	GCCAGGCCTTGGA		155	16	0.10	115	0	0				124	20	0.16			
ADCY8	114	mdanderson.org	37	8	131880105	131880105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001115	exon9	c.C2197A	p.L733I	AAGGAAGCAAACT		41	3	0.07	43	0	0				0	0				
RHPN1	114822	mdanderson.org	37	8	144462334	144462334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_052924	exon10	c.G1205A	p.R402H	AGGAGCGCAGGCA		28	3	0.11	21	0	0				9	0	0.00			
LOC642236	0	bcgsc.ca	37	9	68433564	68433564	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	CATTTTCCCCTAA		149	9	0.06	129	2	0.015503876				0	0				
LOC100132077	0	broad.mit.edu	37	9	97108464	97108464	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	ACAATCTTTTTTT		14	5	0.36	15	0	0				0	0				
ZNF782	158431	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	99581871	99581871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001001662	exon6	c.G434T	p.C145F	CCCTGGCAAGCAG		56	5	0.09	64	0	0				7	2	0.29			
TTF1	7270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135275424	135275424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_007344	exon3	c.A1589G	p.Q530R	TCACCTTGTGCTT		148	31	0.21	149	0	0				42	13	0.31			
DDX31	64794	broad.mit.edu	37	9	135537931	135537931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	DDX31	NM_022779	exon2	c.C542A	p.P181Q	TTCTTTGGAGAAA		144	5	0.03	148	1	0.0067567568		76		66	0	0.00			
NOTCH1	4851	mdanderson.org	37	9	139399468	139399468	+	Missense_Mutation	SNP	G	G	T	rs370713185	alternate_allele	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	NOTCH1_ENST00000277541,NS,lymphoid_neoplasm,0,2	NOTCH1_ENST00000277541	NM_017617	exon26	c.C4675A	p.L1559M	AGTCCAGCCCGTC		44	4	0.09	44	0	0		0	2	29	0	0.00			
TPRN	286262	mdanderson.org	37	9	140094386	140094386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001128228	exon1	c.C778A	p.H260N	GCGGGTGGAGGGA		26	2	0.08	12	0	0				15	0	0.00			
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	2573	2573	+	RNA	SNP	G	G	A	rs28683810		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	GGCCGCGGTACCC		48	9	0.19	49	0	0				0	0				
NAP1L3	4675	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	92927246	92927246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	NAP1L3	NM_004538	exon1	c.C1058G	p.P353R	CTTACAGGCTGGC		114	30	0.26	98	1	0.0102040816		81		20	6	0.30			
PNCK	139728	broad.mit.edu	37	X	152939604	152939604	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	PNCK	NM_001039582	exon1	c.C27A	p.A9A	TGACCCGGCCACT		54	4	0.07	32	0	0		70		1	0	0.00			
ABCD1	215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	152991228	152991228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_000033	exon1	c.C507A	p.H169Q	GGCCCACGCCTAC		61	10	0.16	58	0	0				41	9	0.22			
