Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
AIM1L	55057	bcgsc.ca	37	1	26669776	26669776	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	AIM1L	NM_001039775	exon3	c.C2922A	p.A974A	CTTTAAGGCTGGG		107	0	0.00	54	0	0		98		0	0				
COL8A2	1296	broad.mit.edu	37	1	36564613	36564613	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	COL8A2	NM_005202	exon2	c.T669G	p.G223G	GGGGGCACCCCCC		135	15	0.11	84	1	0.0119047619		41		15	0	0.00			
LPHN2	23266	broad.mit.edu;bcgsc.ca	37	1	82436031	82436031	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	LPHN2	NM_012302	exon14	c.T2716A	p.F906I	CTACACTTTTTCT		153	5	0.03	110	0	0		464		1	0	0.00			
NBPF10	100132406	broad.mit.edu	37	1	145293269	145293269	+	Splice_Site	SNP	G	G	A	rs75226570		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	NBPF10	.	.	.	.	ACAACAGTAAGTT		58	7	0.12	26	0	0		221		4	0	0.00			
MTX1	4580	mdanderson.org	37	1	155178986	155178986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_198883	exon1	c.A391G	p.R131G	GGGCCCAGGCAGG		40	3	0.08	30	0	0				0	0				
SH2D2A	9047	mdanderson.org	37	1	156777073	156777073	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	SH2D2A_ENST00000392306,right_upper_lobe,carcinoma,0,2	SH2D2A_ENST00000392306	NM_001161441	exon8	c.A1097C	p.H366P	GGCTGGTGGGGCA		24	13	0.54	10	5	0.5		0	2	26	0	0.00			
OR10J1	26476	bcgsc.ca	37	1	159410279	159410279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	OR10J1,NS,carcinoma,+1,1	OR10J1	NM_012351	exon1	c.G731A	p.R244Q	AGGGCCGGAAGAA		151	0	0.00	108	1	0.0092592593		118	1	0	0				
PPOX	5498	broad.mit.edu	37	1	161138882	161138882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	PPOX	NM_001122764	exon7	c.C716A	p.A239D	CTCAGGCCCTTGA		81	5	0.06	46	1	0.0217391304		34		37	0	0.00			
EPRS	2058	mdanderson.org	37	1	220178702	220178702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_004446	exon16	c.C1951A	p.H651N	CTTCATGCTGTAA		49	3	0.06	21	0	0				79	0	0.00			
HLX	3142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	221054636	221054636	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_021958	exon2	c.C693G	p.N231K	CATTAACGAGGCT		206	24	0.12	147	0	0				13	0	0.00			
OBSCN	84033	mdanderson.org	37	1	228462511	228462511	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001271223	exon24	c.C7047T	p.G2349G	TGAGGGCGCCTCA		36	3	0.08	28	0	0				0	0				
ARID4B	51742	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235345007	235345007	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	ARID4B	NM_016374	exon20	c.G3227C	p.G1076A	AGCTCCCCAGCAA		99	17	0.17	86	1	0.011627907		142		26	5	0.19			
.	0	broad.mit.edu	37	10	5325578	5325578	+	RNA	DEL	C	C	-	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	GTCAAACAACTGC		10	5	0.50	4	0	0				0	0				
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70412305	70412305	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_030625	exon6	c.C4415G	p.T1472S	TGTACACCGGTAA		112	13	0.12	72	0	0				22	5	0.23			
PTDSS2	81490	mdanderson.org	37	11	489457	489457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_030783	exon9	c.G912T	p.E304D	CTTCGAGTGGAAG		42	3	0.07	37	0	0				81	0	0.00			
ABCC8	6833	hgsc.bcm.edu	37	11	17464362	17464362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_000352	exon10	c.A1535G	p.Y512C	CAGGCGTACAGCT		68	4	0.06	56	0	0				0	0				
RPLP0P2	0	broad.mit.edu	37	11	61405030	61405030	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	TGCTGCTGCAGCC		131	4	0.03	102	1	0.0098039216				11	0	0.00			
ADRBK1	156	mdanderson.org	37	11	67034243	67034243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001619	exon1	c.G73T	p.A25S	ACGCCGGCCGCGC		15	3	0.20	13	0	0				46	0	0.00			
ADAMTS8	11095	mdanderson.org	37	11	130297477	130297477	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_007037	exon1	c.C705A	p.Y235X	GGCCCCGTAGAAG		19	2	0.11	12	0	0				0	0				
KRT8	3856	bcgsc.ca	37	12	53298699	53298699	+	Missense_Mutation	SNP	G	G	A	rs201807576	byfrequency	TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	KRT8,colon,carcinoma,0,2	KRT8	NM_001256282	exon2	c.C151T	p.R51C	AGGAGCGGCTGCT		44	0	0.00	30	0	0		41	2	22	0	0.00			
MARCH9	92979	mdanderson.org	37	12	58152628	58152628	+	Missense_Mutation	SNP	G	G	T	rs146323526	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_138396	exon4	c.G989T	p.R330L	ATGCCCGTTCCAG		97	4	0.04	56	0	0				70	0	0.00			
NCOR2	9612	mdanderson.org	37	12	124827604	124827604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_006312	exon35	c.T4883C	p.I1628T	AGGGGGATGTGGC		56	3	0.05	53	0	0				42	0	0.00			
TRIM13	10206	hgsc.bcm.edu	37	13	50588490	50588490	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	TATATATATATAT		32	6	0.19	22	0	0				0	0				
TRIM13	10206	hgsc.bcm.edu	37	13	50588492	50588492	+	RNA	SNP	T	T	C	rs200626518		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	TATATATATATAC		31	7	0.23	22	0	0				0	0				
TRIM13	10206	hgsc.bcm.edu	37	13	50588494	50588494	+	RNA	SNP	T	T	C	rs201280640		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	TATATATATACAC		31	8	0.26	26	0	0				0	0				
C13orf35	400165	bcgsc.ca	37	13	113333688	113333688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	C13orf35	.	.	.	.	GACCTTGTTAGGA		51	0	0.00	45	0	0		13		2	0	0.00			
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	113898807	113898807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001008895	exon12	c.A1312T	p.I438F	ATCATGATCCTGT		265	25	0.09	213	0	0				52	11	0.21			
GALC	2581	mdanderson.org	37	14	88459491	88459491	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_000153	exon1	c.C18A	p.L6L	AGCCGAGAGTAGC		52	3	0.06	30	1	0.0333333333				0	0				
.	0	broad.mit.edu	37	14	106691798	106691800	+	RNA	DEL	AAC	AAC	-	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	AAC	AAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	ATATGTAACTACT		237	23	0.10	157	0	0				219	0	0.00			
.	56476	bcgsc.ca	37	15	22692049	22692049	+	RNA	SNP	G	G	A	rs9630507		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	AAGCCAGCCTGAG		73	19	0.26	48	4	0.0833333333				0	0				
TPSB2	64499	mdanderson.org	37	16	1278707	1278707	+	Nonsense_Mutation	SNP	G	G	T	rs369177468	alternate_allele	TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_024164	exon7	c.C771A	p.Y257X	ACGGGTGTAGATG		174	5	0.03	145	0	0				10	0	0.00			
PKMYT1	9088	broad.mit.edu	37	16	3026798	3026798	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	PKMYT1	NM_182687	exon3	c.T245G	p.V82G	AATGACACCCGCC		83	19	0.23	79	8	0.1012658228		23		75	4	0.05			
MAZ	4150	mdanderson.org	37	16	29820974	29820974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001042539	exon5	c.G1393T	p.A465S	ACCCCTGCCCAGC		29	3	0.10	39	0	0				159	0	0.00			
ATP2A3	489	mdanderson.org	37	17	3851124	3851124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_174958	exon8	c.C656T	p.A219V	CCCACCGCTTTGC		12	2	0.17	13	0	0				46	0	0.00			
C1QBP	708	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	5336638	5336638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	C1QBP	NM_001212	exon5	c.C674T	p.T225I	TTGAGTGTATAAT		210	7	0.03	136	0	0		12		1426	42	0.03			
AIPL1	23746	mdanderson.org	37	17	6329080	6329080	+	Silent	SNP	C	C	T	rs371635123		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_014336	exon6	c.G855A	p.A285A	GAGGTCCGCCTTG		35	3	0.09	38	0	0				6	0	0.00			
FXR2	9513	broad.mit.edu	37	17	7496130	7496130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	FXR2	NM_004860	exon14	c.A1611C	p.E537D	GGGGGGTTCCCCA		110	11	0.10	111	9	0.0810810811		44		56	0	0.00			
DNAH9	1770	mdanderson.org	37	17	11797775	11797775	+	Missense_Mutation	SNP	G	G	A	rs139641473	byfrequency	TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001372	exon59	c.G11368A	p.V3790M	AGCCCCGTGGAGT		57	3	0.05	57	0	0	0			0	0				
KIAA0100	9703	broad.mit.edu;mdanderson.org	37	17	26970628	26970628	+	Splice_Site	SNP	G	G	T	rs150640676	alternate_allele	TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	KIAA0100	NM_014680	exon3	c.C248A	p.P83Q	ACTCACGGAAGAT		102	4	0.04	58	0	0		175		24	0	0.00			
RHOT1	55288	bcgsc.ca	37	17	30536465	30536465	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	RHOT1	NM_001033568	exon19	c.1835+1G>T	.	TGCTTTGTAAGTT		52	0	0.00	31	0	0		69		1	0	0.00			
FMNL1	752	mdanderson.org	37	17	43318982	43318982	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_005892	exon14	c.G1566A	p.P522P	GGTGCCGACCGGC		44	3	0.07	18	0	0				70	0	0.00			
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48821082	48821082	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_006107	exon6	c.T442A	p.S148T	TTAGGGTCTGAAG		209	24	0.11	139	0	0				277	76	0.27			
DSC1	1823	broad.mit.edu	37	18	28710564	28710564	+	Silent	SNP	G	G	A	rs140362700	bycluster;byfrequency;by1000genomes	TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	DSC1	NM_024421	exon16	c.C2598T	p.S866S	CCGATCGCTGCAG		209	5	0.02	149	0	0		240		0	0				
SAFB	6294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5667118	5667118	+	Missense_Mutation	SNP	G	G	T	rs201604799	by1000genomes;alternate_allele	TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_002967	exon18	c.G2396T	p.G799V	GCTGGGGGGGCTA		178	27	0.15	124	0	0				459	130	0.28			
MAST3	23031	broad.mit.edu	37	19	18260116	18260116	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	MAST3	NM_015016	exon27	c.A3510C	p.P1170P	TGGGCCACCCCGC		70	14	0.20	47	6	0.1276595745		83		11	1	0.09			
SIX5	147912	bcgsc.ca	37	19	46268979	46268979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	SIX5	NM_175875	exon3	c.C2000T	p.A667V	AGCCCTGCTGACC		68	0	0.00	32	0	0		35		56	0	0.00			
ZNF765	91661	mdanderson.org	37	19	53905414	53905414	+	Missense_Mutation	SNP	C	C	A	rs375081702	alternate_allele	TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001040185	exon3	c.C112A	p.L38M	GTGATGCTGGAGA		60	3	0.05	47	0	0				2	0	0.00			
.	0	broad.mit.edu	37	2	38709548	38709548	+	RNA	DEL	G	G	-	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	TCCTTTGGGCTGG		196	20	0.10	148	0	0				3247	0	0.00			
EPAS1	2034	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	46583327	46583327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001430	exon3	c.G255T	p.Q85H	TGACCAGCAGATG		115	5	0.04	76	0	0				22	0	0.00			
FAHD2CP	729234	hgsc.bcm.edu	37	2	96685052	96685052	+	RNA	SNP	T	T	G	rs372044509		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	GCAGAGTCCCCAG		56	8	0.14	46	0	0				23	3	0.13			
LRP2	4036	broad.mit.edu	37	2	169993970	169993970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	LRP2	NM_004525	exon76	c.C13552A	p.P4518T	TTATGGGCTGCTT		135	6	0.04	81	1	0.012345679		751		0	0				
PTPRN	5798	broad.mit.edu	37	2	220162683	220162683	+	Missense_Mutation	SNP	G	G	T	rs375078153	alternate_allele	TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	PTPRN	NM_002846	exon13	c.C1811A	p.A604E	TGCCGCGCATGCT		162	4	0.02	129	0	0		138		1	0	0.00			
MAVS	57506	mdanderson.org	37	20	3846444	3846444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_020746	exon7	c.G1273A	p.A425T	GTGCTGGCATCCC		95	4	0.04	59	0	0				8	0	0.00			
FRG1B	284802	bcgsc.ca	37	20	29623214	29623214	+	Missense_Mutation	SNP	C	C	T	rs367590609		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	FRG1B	.	.	.	.	TGCACTCGACAAT		511	21	0.04	325	9	0.0276923077		181		124	2	0.02			
GADL1	339896	broad.mit.edu	37	3	30875385	30875385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	GADL1	NM_207359	exon11	c.C1010A	p.A337D	ATCCCAGCCATCA		215	4	0.02	158	0	0		91		0	0				
SLC22A14	9389	mdanderson.org	37	3	38354566	38354566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	SLC22A14,rectum,carcinoma,0,1	SLC22A14	NM_004803	exon5	c.G1021A	p.A341T	TACGCCGCAAGTG		102	5	0.05	89	1	0.0112359551		0	1	0	0				
ACVR2B	93	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	38518867	38518867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001106	exon2	c.C142T	p.R48C	CTGGAGCGCTGCG		87	11	0.13	80	0	0				3	1	0.33			
ARIH2	10425	broad.mit.edu;mdanderson.org	37	3	49020649	49020649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	ARIH2	NM_006321	exon16	c.G1428T	p.M476I	CCAGATGCATATA		51	4	0.08	56	0	0		32		241	0	0.00			
MED12L	116931	broad.mit.edu;mdanderson.org	37	3	151093929	151093929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	MED12L	NM_053002	exon26	c.G3875A	p.C1292Y	TTATCTGTTATCC		112	10	0.09	66	1	0.0151515152		271		4	0	0.00			
MUC4	4585	broad.mit.edu	37	3	195517978	195517978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	NM_018406	exon2	c.G473C	p.G158A	TCAGTTCCTGCTG		136	3	0.02	109	1	0.0091743119		1505	2	0	0				
STK32B	55351	mdanderson.org	37	4	5418660	5418660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_018401	exon6	c.G561T	p.M187I	CTACATGGGTGAG		35	3	0.09	28	0	0				0	0				
SEPT11	55752	mdanderson.org	37	4	77926924	77926924	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_018243	exon3	c.G313T	p.G105X	GGATTTGGAGACC		91	5	0.05	89	0	0				24	0	0.00			
SEMA5A	9037	mdanderson.org	37	5	9054225	9054225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_003966	exon19	c.C2663A	p.A888E	CAGAGTGCCTCTT		40	3	0.08	26	0	0				0	0				
.	0	bcgsc.ca	37	5	51227580	51227580	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	AGTTTACAGGGAG		38	1	0.03	30	0	0				0	0				
MAP1B	4131	broad.mit.edu	37	5	71495566	71495566	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	MAP1B	NM_005909	exon5	c.A6384G	p.G2128G	AGGGGGAGCCCCA		148	3	0.02	146	0	0		243		8	0	0.00			
MCC	4163	mdanderson.org	37	5	112824069	112824069	+	Missense_Mutation	SNP	T	T	C	rs201571604		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001085377	exon1	c.A43G	p.S15G	CGCCGCTGCTGGA		8	3	0.38	11	0	0				0	0				
PROB1	389333	mdanderson.org	37	5	138728419	138728419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001161546	exon1	c.C2352A	p.S784R	GGATGAGCTGCGG		28	3	0.11	46	0	0				2	0	0.00			
ARAP3	64411	bcgsc.ca	37	5	141059566	141059566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	ARAP3	NM_022481	exon2	c.T488C	p.L163P	GAGTCCAGGCCGA		81	0	0.00	76	0	0		139		2	0	0.00			
SLC34A1	6569	mdanderson.org	37	5	176824902	176824902	+	Missense_Mutation	SNP	G	G	A	rs141898673		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	SLC34A1,middle_lobe,carcinoma,+1,1	SLC34A1	NM_003052	exon13	c.G1535A	p.R512H	AGTACCGCTGGTT		53	3	0.06	62	0	0	0	1	1	0	0				
DEK	7913	hgsc.bcm.edu;mdanderson.org	37	6	18264096	18264096	+	Missense_Mutation	SNP	C	C	G	rs147127829	bycluster;byfrequency;by1000genomes	TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_003472	exon2	c.G123C	p.E41D	CTCCTCCTCGTCG		145	8	0.06	113	0	0	0.001			58	1	0.02			
HIST1H2AI	8329	broad.mit.edu	37	6	27776148	27776148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	HIST1H2AI	NM_003509	exon1	c.C161T	p.A54V	TGGCGGCGGTGCT		186	10	0.05	131	0	0		9		84	11	0.13			
GPX5	2880	bcgsc.ca	37	6	28500116	28500116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	GPX5,NS,carcinoma,0,1	GPX5	NM_003996	exon3	c.A260G	p.E87G	AGGGGGAGGATTT		166	6	0.04	85	1	0.0117647059		42	1	0	0				
B3GALT4	8705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	33245604	33245604	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_003782	exon1	c.G408T	p.G136G	CCAGGGGGATATC		85	10	0.12	44	0	0				13	0	0.00			
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33652420	33652420	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_002224	exon38	c.C5092G	p.R1698G	CAGAACCGGAAGT		158	24	0.15	121	0	0				42	11	0.26			
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG		23	2	0.09	21	1	0.0476190476		0	2	1	0	0.00			
PMS2CL	0	broad.mit.edu	37	7	6786128	6786128	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	TGTCTCAAAAAAA		8	3	0.38	7	0	0				1	0	0.00			
GLI3	2737	mdanderson.org	37	7	42005903	42005903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	GLI3,NS,carcinoma,+1,1	GLI3	NM_000168	exon15	c.C2768A	p.P923H	TGGGCGGGCGTGA		51	3	0.06	27	0	0		1	1	0	0				
INTS4L2	0	broad.mit.edu	37	7	65139108	65139109	+	RNA	INS	-	-	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	CAGGAAGAAAAAA		9	3	0.33	4	0	0				0	0				
RAB19	401409	broad.mit.edu	37	7	140125883	140125883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	RAB19	NM_001008749	exon4	c.T587C	p.L196P	ACGGCCTCCCCCT		180	4	0.02	99	1	0.0101010101		21		5	0	0.00			
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103277378	103277378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_015902	exon53	c.G7551T	p.R2517S	GCCAGGCCTTGGA		176	16	0.09	115	0	0				96	27	0.28			
SPATA31D4	0	broad.mit.edu	37	9	84545116	84545116	+	RNA	DEL	C	C	-	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	CGCCTTCTTTTTT		104	6	0.06	68	0	0				0	0				
ZNF782	158431	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	99581871	99581871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001001662	exon6	c.G434T	p.C145F	CCCTGGCAAGCAG		108	8	0.07	64	0	0				3	1	0.33			
TTF1	7270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	135275424	135275424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_007344	exon3	c.A1589G	p.Q530R	TCACCTTGTGCTT		243	21	0.09	149	0	0				21	7	0.33			
NDOR1	27158	mdanderson.org	37	9	140110832	140110832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001144026	exon14	c.G1785T	p.Q595H	GCTCCAGCAGACA		33	3	0.09	27	0	0				48	0	0.00			
MAP7D2	256714	mdanderson.org	37	X	20074871	20074871	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001168466	exon4	c.C411A	p.R137R	CTGTGTGCGCTCC		46	3	0.07	30	0	0				34	0	0.00			
NAP1L3	4675	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	92927246	92927246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	NAP1L3	NM_004538	exon1	c.C1058G	p.P353R	CTTACAGGCTGGC		149	34	0.23	98	1	0.0102040816		81		21	9	0.43			
ABCD1	215	bcgsc.ca	37	X	152991228	152991228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	ABCD1	NM_000033	exon1	c.C507A	p.H169Q	GGCCCACGCCTAC		72	3	0.04	58	0	0		59		10	0	0.00			
PLXNB3	5365	mdanderson.org	37	X	153039024	153039024	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001163257	exon20	c.G3204A	p.R1068R	GCAGCGGCCCCTA		54	3	0.06	44	0	0				0	0				
