Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
ESPNP	0	broad.mit.edu	37	1	17030903	17030905	+	RNA	DEL	GAG	GAG	-	rs55663095	alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	GAG	GAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	.	.	.	.	ATCGACGAGGAGG		7	3	0.43	8	0	0				0	0				
WASF2	10163	broad.mit.edu	37	1	27736343	27736343	+	Silent	SNP	G	G	A	rs200541363		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	WASF2	NM_006990	exon8	c.C1182T	p.P394P	AGGAGGGGGAGGA		230	4	0.02	181	1	0.0055248619		41		48	0	0.00			
CACHD1	57685	broad.mit.edu	37	1	65147783	65147783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	CACHD1	NM_020925	exon26	c.G3427T	p.D1143Y	GAAAGTGATCATG		282	4	0.01	225	0	0		125		81	0	0.00			
.	0	broad.mit.edu	37	1	143392853	143392853	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	.	.	.	.	CTCTCATTTTTTT		8	3	0.38	10	0	0				0	0				
CACNA1E	777	mdanderson.org	37	1	181767679	181767679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001205293	exon48	c.G6651T	p.Q2217H	CCCCCAGCAGAGC		56	3	0.05	48	0	0				1	0	0.00			
ZNF496	84838	mdanderson.org	37	1	247464565	247464565	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_032752	exon9	c.G1020A	p.P340P	AGATCGCGGGTTG		51	3	0.06	28	0	0				96	0	0.00			
RTKN2	219790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63957724	63957724	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_145307	exon12	c.G1773A	p.R591R	TTTCTGCCTTGGA		165	67	0.41	154	0	0				5	3	0.60			
MYPN	84665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	69881408	69881408	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	MYPN,NS,carcinoma,+2,1	MYPN	NM_032578	exon2	c.A213G	p.E71E	AGAAGAATTAGAC		149	8	0.05	179	0	0		2	1	0	0				
LRRC20	55222	mdanderson.org	37	10	72061201	72061201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_207119	exon5	c.C464A	p.P155Q	TTGAGTGGGTTGA		61	3	0.05	66	0	0				5	0	0.00			
ZNF503	84858	mdanderson.org	37	10	77159117	77159117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_032772	exon2	c.C1331A	p.A444E	GCCGCCGCCCCTG		14	2	0.14	26	0	0				6	0	0.00			
CNNM1	26507	mdanderson.org	37	10	101089397	101089397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_020348	exon1	c.G253T	p.A85S	ACCGCCGCACCGG		13	3	0.23	14	0	0				0	0				
KNDC1	85442	mdanderson.org	37	10	135012338	135012338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_152643	exon14	c.G2326T	p.A776S	TCATCGGCAGCTC		12	2	0.17	18	0	0				4	0	0.00			
MUC2	4583	mdanderson.org	37	11	1092960	1092960	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_002457	exon30	c.C4779A	p.T1593T	GGTGACCCCAACC		21	4	0.19	26	1	0.0384615385				0	0				
DCP1B	196513	broad.mit.edu;mdanderson.org	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	DCP1B,bladder,carcinoma,0,13	DCP1B	NM_152640	exon7	c.G756C	p.Q252H	CTGCTGCTGGTGG		68	4	0.06	18	0	0		63	13	113	3	0.03			
TUBA1A	7846	broad.mit.edu	37	12	49580272	49580274	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	GGA	GGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	TUBA1A	.	.	.	.	CAGGGGGGAGGAG		160	8	0.05	87	0	0		32		10	0	0.00			
TENC1	23371	mdanderson.org	37	12	53442956	53442956	+	Missense_Mutation	SNP	G	G	T	rs12369033	bycluster;byfrequency;by2hit2allele;by1000genomes;alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_015319	exon1	c.G29T	p.R10M	TTGGGAGGGGGGA		109	3	0.03	49	0	0				0	0				
KBTBD7	84078	mdanderson.org	37	13	41767097	41767097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_032138	exon1	c.C1297A	p.L433I	CATTGAGATATGC		140	6	0.04	153	1	0.0065359477				19	0	0.00			
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1703072	1703072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_020825	exon7	c.C952A	p.P318T	CGCCTGCCTCTGA		100	14	0.14	83	0	0				6	0	0.00			
FAM86A	196483	ucsc.edu	37	16	5140488	5140488	+	Missense_Mutation	SNP	C	C	T	rs200021489	byfrequency	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	FAM86A	NM_201400	exon5	c.G421A	p.A141T	GGGCGGCGTCCCA		195	4	0.02	194	1	0.0051546392		32		27	9	0.33	rescued with RNA-seq		
ITGAL	3683	mdanderson.org	37	16	30510736	30510736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_002209	exon17	c.G2071T	p.G691W	CCAGGAGGGAGAC		52	3	0.06	74	0	0				11	0	0.00			
HEATR3	55027	mdanderson.org	37	16	50112705	50112705	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_182922	exon7	c.A817T	p.I273L	GAAATCATAAATG		57	3	0.05	84	0	0				41	1	0.02			
KRTAP1-1	81851	broad.mit.edu	37	17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	KRTAP1-1,NS,malignant_melanoma,0,1	KRTAP1-1	NM_030967	exon1	c.A346G	p.I116V	ACCTGATACGGGT		108	3	0.03	87	0	0		23	1	0	0				
KRTAP9-9	81870	hgsc.bcm.edu	37	17	39411694	39411694	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	KRTAP9-9,NS,carcinoma,+2,1	KRTAP9-9	NM_030975	exon1	c.G57C	p.W19C	CTGCTGGAAGCCC		110	8	0.07	68	1	0.0147058824		2	1	0	0				
EFCAB13	124989	broad.mit.edu	37	17	45455146	45455146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_152347	exon13	c.G1387T	p.A463S	TGTGAAGCTATCA		535	7	0.01	348	1	0.0028735632				3	0	0.00			
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60743604	60743604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_006039	exon3	c.C670T	p.R224C	GACGAGCGCTGGG		58	10	0.17	53	0	0				49	16	0.33			
KLHL14	57565	mdanderson.org	37	18	30350531	30350531	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_020805	exon2	c.C24A	p.T8T	GGTGGAGGTCCTG		15	2	0.13	18	0	0				0	0				
PRAM1	84106	mdanderson.org	37	19	8563401	8563401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_032152	exon2	c.C1291A	p.P431T	GGCCTGGCCTGGC		38	3	0.08	45	0	0				3	0	0.00			
PALM3	342979	mdanderson.org	37	19	14166230	14166230	+	Missense_Mutation	SNP	C	C	T	rs372500968		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001145028	exon5	c.G362A	p.R121H	AGAGGACGGTGAC		45	3	0.07	52	0	0				30	0	0.00			
WDR87	83889	broad.mit.edu	37	19	38377225	38377225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	WDR87	NM_031951	exon6	c.C6969A	p.D2323E	TTCCTCGTCACTC		448	5	0.01	444	0	0		191		7	0	0.00			
CLASRP	11129	mdanderson.org	37	19	45556058	45556058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_007056	exon4	c.G207T	p.W69C	GCCCTGGCAGGGG		70	4	0.06	77	0	0				95	0	0.00			
UBE2M	9040	broad.mit.edu	37	19	59067587	59067587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	UBE2M	NM_003969	exon6	c.C421A	p.P141T	CCTCGGGGTTGGG		187	5	0.03	153	0	0		14		580	0	0.00			
.	0	broad.mit.edu	37	2	38710046	38710047	+	RNA	DNP	TA	TA	AT	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	TA	TA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	.	.	.	.	AAATAATAAATAA		58	6	0.10	56	1	0.0178571429				0	0				
HIBCH	26275	ucsc.edu	37	2	191161637	191161637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	HIBCH	NM_014362	exon3	c.G121A	p.E41K	TTTTTTCCAATAG		173	1	0.01	174	1	0.0057471264		28		40	5	0.13			
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	49509508	49509508	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_015339	exon5	c.C1743A	p.Y581X	GGCATGGTAAGCA		171	54	0.32	108	0	0				154	54	0.35			
ZNRF3	84133	mdanderson.org	37	22	29446468	29446468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001206998	exon8	c.C2299T	p.P767S	CATTTGCCCAGGA		51	3	0.06	53	0	0				39	0	0.00			
ODF3B	440836	broad.mit.edu;mdanderson.org	37	22	50969176	50969176	+	Nonsense_Mutation	SNP	G	G	T	rs371794773	alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	ODF3B	NM_001014440	exon6	c.C646A	p.R216R	GCTTCCGAGTGTT		92	4	0.04	85	0	0		6		39	0	0.00			
BRPF1	7862	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	9783003	9783003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001003694	exon5	c.G1734T	p.E578D	TTCTGAGGATAAG		73	4	0.05	67	0	0				29	0	0.00			
FGD5	152273	broad.mit.edu	37	3	14941958	14941958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	FGD5	NM_152536	exon8	c.A3203G	p.Q1068R	ACACACAGGGTGA		286	7	0.02	255	0	0		248		3	0	0.00			
CACNA1D	776	broad.mit.edu	37	3	53839099	53839099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	CACNA1D	NM_000720	exon46	c.A5735G	p.E1912G	TCTTGGAGGACGA		89	3	0.03	64	1	0.015625		324		0	0				
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64133021	64133021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	PRICKLE2,colon,carcinoma,-1,1	PRICKLE2	NM_198859	exon7	c.C1145T	p.S382F	TGGCTGGACAGGC		78	35	0.45	80	0	0		-1	1	2	0	0.00			
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108189650	108189650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_014981	exon14	c.G1338C	p.R446S	AAACATCCTTTCA		170	24	0.14	140	0	0				0	0				
MED12L	116931	broad.mit.edu	37	3	150881773	150881773	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	MED12L	NM_053002	exon8	c.C1201T	p.Q401X	CTGCTGCAGGTGG		181	4	0.02	130	0	0		271		7	0	0.00			
FGF12	2257	mdanderson.org	37	3	192125818	192125818	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_021032	exon1	c.A195G	p.R65R	ACCTGGTCTCCGC		43	3	0.07	48	0	0				1	0	0.00			
GAK	2580	mdanderson.org	37	4	877844	877844	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_005255	exon12	c.C1236A	p.Y412X	TGTGATGTAAGAT		86	4	0.05	70	0	0				64	0	0.00			
WHSC1	7468	mdanderson.org	37	4	1978397	1978397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_133335	exon21	c.C3817T	p.R1273W	GGCAAGCGGCCCT		51	3	0.06	60	0	0				40	0	0.00			
HTT	3064	broad.mit.edu	37	4	3076604	3076606	+	In_Frame_Del	DEL	CAG	CAG	-	rs10618869	alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	CAG	CAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	HTT	NM_002111	exon1	c.52_54del	p.18_18del	TCCTTCCAGCAGC		8	3	0.38	6	0	0		221		4	0	0.00			
TRIO	7204	mdanderson.org	37	5	14507271	14507271	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_007118	exon56	c.G8653T	p.G2885X	CGATGGGGAAGCC		37	3	0.08	40	0	0				24	0	0.00			
MEGF10	84466	broad.mit.edu	37	5	126758405	126758405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	MEGF10	NM_032446	exon14	c.G1634T	p.S545I	ACTGCAGCCACGC		140	7	0.05	147	2	0.0136054422		152		2	0	0.00			
HIST1H4A	8359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26021940	26021940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_003538	exon1	c.G34A	p.G12S	GGTTTGGGTAAGG		131	13	0.10	132	0	0				0	0				
MUC21	394263	broad.mit.edu	37	6	30954813	30954813	+	Silent	SNP	T	T	C	rs9262371	bycluster;by1000genomes	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	MUC21	NM_001010909	exon2	c.T861C	p.N287N	CACCAATTCTGAG		66	4	0.06	82	1	0.012195122		98		0	0				
ANKRD6	22881	broad.mit.edu	37	6	90276712	90276712	+	Missense_Mutation	SNP	C	C	T	rs200814043	by1000genomes;alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	ANKRD6	NM_001242809	exon2	c.C17T	p.A6V	AAGATGCGGTCGC		273	6	0.02	223	2	0.0089686099		51		4	0	0.00			
TTLL2	83887	mdanderson.org	37	6	167754661	167754661	+	Nonsense_Mutation	SNP	A	A	T	rs909545	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_031949	exon3	c.A1273T	p.R425X	GAGGGGAGAGAAG		105	3	0.03	98	0	0				0	0				
SDK1	221935	broad.mit.edu	37	7	3681699	3681699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	SDK1,bladder,carcinoma,+1,1	SDK1	NM_152744	exon4	c.G675T	p.W225C	GACTTGGTTTAGA		130	5	0.04	118	0	0		361	1	3	0	0.00			
SP8	221833	broad.mit.edu;mdanderson.org	37	7	20824970	20824970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	SP8	NM_182700	exon2	c.G466A	p.G156S	CGCCGCCGCTGCC		59	4	0.07	46	0	0		43		2	0	0.00			
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	33407379	33407380	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	BBS9	NM_198428	exon17	c.1694_1695insT	p.G565fs	TTGTAGGTTTTGC		116	39	0.34	133	0	0		194		20	0	0.00			
CCT6P1	0	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	.	.	.	.	TCTTGCGCAGAAT		217	6	0.03	122	0	0				17	0	0.00			
PON1	5444	broad.mit.edu	37	7	94944672	94944672	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	PON1,NS,carcinoma,0,1	PON1	NM_000446	exon4	c.C332A	p.S111X	TTAAATGAAGATA		272	5	0.02	180	1	0.0055555556		55	1	0	0				
ZAN	7455	broad.mit.edu	37	7	100349865	100349865	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	ZAN	.	.	.	.	ACCATCTCCCCAG		221	15	0.07	111	5	0.045045045		658		3	0	0.00			
MUC17	140453	broad.mit.edu	37	7	100686191	100686191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	MUC17	NM_001040105	exon3	c.G11494T	p.A3832S	TCTGAGGCCAGCA		152	4	0.03	82	0	0		804		0	0				
TRIM24	8805	broad.mit.edu	37	7	138239517	138239517	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	TRIM24	NM_003852	exon9	c.C1336T	p.Q446X	AATTCACAGCCAC		641	5	0.01	384	1	0.0026041667		131		88	0	0.00			
YWHAZ	7534	mdanderson.org	37	8	101960892	101960892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001135699	exon2	c.C226A	p.Q76K	TCTGCTGTTTTTT		52	3	0.06	40	1	0.025				2114	3	0.00			
PRSS3	5646	mdanderson.org	37	9	33794809	33794809	+	Missense_Mutation	SNP	G	G	A	rs201061108		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001197097	exon2	c.G20A	p.S7N	AGACAAGTGGCTT		90	15	0.17	60	2	0.0333333333				0	0				
RGS3	5998	broad.mit.edu	37	9	116303614	116303614	+	Missense_Mutation	SNP	C	C	G	rs201201135	by1000genomes;alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	RGS3	NM_017790	exon18	c.C1716G	p.F572L	CCCTTTCGGCTCT		90	4	0.04	88	0	0		251		0	0				
IGSF1	3547	broad.mit.edu	37	X	130412689	130412689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	IGSF1	NM_001170961	exon12	c.C1802A	p.A601E	GTCTCTGCCCACA		264	5	0.02	155	0	0		231		40	0	0.00			
ARHGAP4	393	mdanderson.org	37	X	153174574	153174574	+	Silent	SNP	G	G	T	rs202239294	alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001164741	exon22	c.C2677A	p.R893R	AGCGTCGTCTGTG		55	3	0.05	34	0	0				70	0	0.00			
DNAH11	8701	mdanderson.org	37	7	21745108	21745108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	DNAH11,NS,carcinoma,-1,1	DNAH11	.	.	.	.	GCTGTGCGGCACT		130	5	0.04	138	0	0		-1	1	0	0				
DNAH11	8701	mdanderson.org	37	7	21924014	21924014	+	Missense_Mutation	SNP	A	A	T	rs6461613	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	.	.	.	.	GAATTCATGAATC		95	2	0.02	114	0	0				0	0				
