Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CLCNKB	1188	broad.mit.edu	37	1	16383402	16383402	+	Silent	SNP	C	C	T	rs6698427	bycluster	TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	CLCNKB	NM_000085	exon20	c.C2055T	p.A685A	GCCAGCCCCAAAG		612	9	0.01	499	1	0.002004008		50		6	0	0.00			
SSBP3	23648	broad.mit.edu	37	1	54871665	54871665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	SSBP3	NM_001009955	exon1	c.A17G	p.K6R	GAGCCTTTGCCTT		142	7	0.05	119	1	0.0084033613		65		15	0	0.00			
DIRAS3	9077	hgsc.bcm.edu	37	1	68512245	68512245	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	ACGTTTTCTACAC		65	18	0.28	61	0	0				13	8	0.62			
SELL	6402	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	169680646	169680646	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	SELL	NM_000655	exon1	c.C33G	p.S11R	GGCTTTGCTTGGT		78	5	0.06	76	0	0		43		6	0	0.00			
ACBD3	64746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226334321	226334321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_022735	exon8	c.A1577G	p.Y526C	CTAGTATAATAGA		124	16	0.13	101	0	0				8	1	0.13			
EXOC8	149371	broad.mit.edu	37	1	231472713	231472713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	EXOC8	NM_175876	exon1	c.G779A	p.R260H	AAAATACGGCTCT		162	5	0.03	135	0	0		42		0	0				
GDF10	2662	mdanderson.org	37	10	48429183	48429183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_004962	exon2	c.C703T	p.P235S	GCCGGGGCACCCC		46	3	0.07	44	0	0				0	0				
MUC6	4588	bcgsc.ca	37	11	1017556	1017556	+	Silent	SNP	G	G	A	rs77815355		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	MUC6	NM_005961	exon31	c.C5245T	p.L1749L	AATGTAGGGATGT		131	11	0.08	128	2	0.015625		408		0	0				
PPME1	51400	mdanderson.org	37	11	73936285	73936285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_016147	exon5	c.G382T	p.A128S	CTGTCTGCAGAAA		51	3	0.06	64	0	0				7	0	0.00			
NCAM1	4684	mdanderson.org	37	11	113105859	113105859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001242607	exon16	c.G1876T	p.A626S	AGCGCGGCCTCCG		45	3	0.07	74	0	0				1	0	0.00			
NCAM1	4684	mdanderson.org	37	11	113105886	113105886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001242607	exon16	c.C1903T	p.P635S	CCAGTCCGTAAGT		42	3	0.07	65	0	0				1	0	0.00			
GRIK4	2900	broad.mit.edu	37	11	120856677	120856677	+	Missense_Mutation	SNP	A	A	C	rs372805470		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	GRIK4	NM_014619	exon19	c.A2579C	p.H860P	GTATCCACCCCCG		61	15	0.25	51	11	0.2156862745		149		2	1	0.50			
PDE3A	0	broad.mit.edu	37	12	20522114	20522115	+	RNA	INS	-	-	GCGT	rs138187101	bycluster;by1000genomes	TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	PDE3A	.	.	.	.	GGGAAGAGCGTGC		33	7	0.21	16	0	0		184		0	0				
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56995665	56995665	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	BAZ2A	NM_013449	exon20	c.3743delT	p.L1248fs	GCTCCAGGAACCC		71	13	0.18	81	0	0		263		6	0	0.00			
CLIP1	6249	hgsc.bcm.edu	37	12	122862115	122862115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_002956	exon3	c.T478C	p.S160P	AGGGGGAGGAAGA		115	5	0.04	125	0	0				4	0	0.00			
DDX51	317781	broad.mit.edu	37	12	132625414	132625414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	DDX51	NM_175066	exon9	c.G1402A	p.G468R	AATCCCCGTCCCC		113	4	0.04	115	0	0		33		73	6	0.08	rescued with RNA-seq		
BASP1P1	646201	hgsc.bcm.edu	37	13	23471388	23471388	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	AGAGAGAGGAGAG		37	5	0.14	45	0	0				0	0				
GRK1	6011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114321726	114321726	+	Missense_Mutation	SNP	G	G	A	rs184639495	bycluster;by1000genomes	TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_002929	exon1	c.G25A	p.V9M	GAGACCGTGGTGG		38	9	0.24	78	0	0	0			0	0				
ANG	283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	21162164	21162164	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001097577	exon2	c.G441A	p.P147P	TCGTCCGTAACCA		172	11	0.06	174	0	0				24	0	0.00			
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105412772	105412772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	AHNAK2_ENST00000333244,NS,carcinoma,+2,1	AHNAK2_ENST00000333244	NM_138420	exon7	c.C9016T	p.P3006S	CCTTCGGCGCAGA		209	49	0.23	220	0	0		2	1	0	0				
GOLGA6B	55889	hgsc.bcm.edu	37	15	72954932	72954932	+	Missense_Mutation	SNP	G	G	A	rs371637348		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	GOLGA6B,NS,carcinoma,+1,1	GOLGA6B	NM_018652	exon11	c.G1187A	p.R396Q	GGCTGCGAAAGGA		292	12	0.04	277	1	0.0036101083		1	1	0	0				
WASH3P	0	broad.mit.edu	37	15	102515335	102515335	+	RNA	SNP	C	C	G	rs201001946		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	WASH3P,NS,carcinoma,0,4	WASH3P	.	.	.	.	CGAAAGCTGGAGA		51	4	0.08	41	2	0.0487804878		56	4	478	67	0.14			
NTHL1	4913	mdanderson.org	37	16	2097800	2097800	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_002528	exon1	c.C49T	p.L17L	GGGTCAGCATCCT		19	2	0.11	32	0	0				117	0	0.00			
ZNF205	7755	mdanderson.org	37	16	3170289	3170289	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_003456	exon7	c.C1628G	p.A543G	CGGCGGCGGGGGC		12	2	0.17	16	0	0				83	1	0.01			
METTL9	51108	mdanderson.org	37	16	21611168	21611168	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_016025	exon1	c.C114T	p.S38S	GACTAGCGGCCCG		18	2	0.11	14	0	0				9	0	0.00			
EEF2K	29904	mdanderson.org	37	16	22269002	22269002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_013302	exon9	c.T940C	p.C314R	CATGCCTGCAACC		52	3	0.06	46	0	0				2	0	0.00			
HSF4	3299	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	67200242	67200242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	HSF4	NM_001538	exon7	c.C505T	p.R169W	TTGTGGCGGGAGG		99	6	0.06	125	0	0		33		7	0	0.00			
DHODH	1723	mdanderson.org	37	16	72056285	72056285	+	Missense_Mutation	SNP	C	C	T	rs267606768		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	DHODH,colon,carcinoma,0,1	DHODH	NM_001361	exon6	c.C730T	p.R244W	GGCTTGCGGAGAG		38	3	0.08	45	0	0		0	1	40	0	0.00			
CDRT15P1	94158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	13928089	13928089	+	RNA	SNP	C	C	T	rs199604193		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	CAGACACGTGGTG		423	47	0.11	439	0	0	0.001			0	0				
CDRT15P1	0	broad.mit.edu;ucsc.edu	37	17	13928102	13928102	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	AGGTGGCCTGCAG		384	47	0.12	389	1	0.0025706941				1	0	0.00			
GAS2L2	246176	broad.mit.edu	37	17	34077157	34077157	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	GAS2L2,right_upper_lobe,carcinoma,0,2	GAS2L2	NM_139285	exon2	c.A566C	p.D189A	GAGGGGTCGGGCG		93	33	0.35	92	17	0.1847826087		94	2	0	0				
UNC13D	201294	mdanderson.org	37	17	73832673	73832673	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_199242	exon14	c.C1278A	p.A426A	CAGCCGGGCTGGG		35	3	0.09	35	0	0				2	0	0.00			
RNF157	114804	mdanderson.org	37	17	74236319	74236319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_052916	exon1	c.G3T	p.M1I	GGCCCCCATGGCC		18	2	0.11	20	0	0				1	0	0.00			
USP36	57602	mdanderson.org	37	17	76799979	76799979	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_025090	exon16	c.C2298A	p.P766P	GGGCTTGGGGGTA		46	3	0.07	47	0	0				19	0	0.00			
TRAPPC8	22878	mdanderson.org	37	18	29470790	29470790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_014939	exon12	c.G1636A	p.A546T	AATGTGCTGCCTG		52	3	0.06	88	0	0				1	0	0.00			
MED16	10025	hgsc.bcm.edu;mdanderson.org	37	19	871976	871976	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_005481	exon12	c.A2048T	p.Q683L	CTGTCCTGGGTAT		85	4	0.05	75	0	0				121	0	0.00			
ZBTB7A	51341	mdanderson.org	37	19	4054919	4054919	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_015898	exon2	c.G312A	p.V104V	GTCACCCACGTTG		37	3	0.08	21	0	0				3	0	0.00			
ANKRD24	170961	mdanderson.org	37	19	4216046	4216046	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_133475	exon16	c.A1269G	p.P423P	CCTTCCAGGTGAG		41	3	0.07	51	0	0				0	0				
MAP1S	55201	mdanderson.org	37	19	17838550	17838550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_018174	exon5	c.C2357T	p.S786L	CCACATCGGTCAG		38	3	0.08	56	0	0				136	0	0.00			
CAPNS1	826	broad.mit.edu;mdanderson.org	37	19	36632054	36632054	+	Silent	SNP	C	C	T	rs17879825		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	CAPNS1	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		116	8	0.07	54	3	0.0555555556		19		3	0	0.00			
ACTN4	81	mdanderson.org	37	19	39214851	39214851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_004924	exon15	c.G1747A	p.E583K	GATAGGGAGCGCG		42	3	0.07	62	0	0				140	0	0.00			
HIPK4	147746	mdanderson.org	37	19	40886728	40886728	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_144685	exon3	c.C1170A	p.T390T	GTAGGGGGTCCCA		41	3	0.07	52	0	0				0	0				
CNFN	84518	mdanderson.org	37	19	42891589	42891589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_032488	exon3	c.G152A	p.R51H	GAGATGCGGCAGG		43	3	0.07	51	0	0				20	1	0.05			
CARD8	22900	hgsc.bcm.edu;broad.mit.edu	37	19	48715121	48715122	+	Missense_Mutation	DNP	TC	TC	AA	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	TC	TC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001184900	exon11	c.G1459T	p.E487L	ACCAGCTCCTTCT		195	10	0.05	275	0	0				9	0	0.00			
GYS1	2997	mdanderson.org	37	19	49473946	49473946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_002103	exon14	c.C1666T	p.R556W	GGAACCGCCGGTC		49	3	0.06	55	1	0.0181818182				16	0	0.00			
FLT3LG	2323	mdanderson.org	37	19	49979713	49979713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001204503	exon4	c.C232A	p.L78M	CTGGTCCTGGCAC		45	3	0.07	49	0	0				34	0	0.00			
SPIB	6689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50926238	50926238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001243999	exon4	c.C283A	p.L95M	CCCAGCCTGGAGG		158	20	0.13	235	0	0				17	1	0.06			
ALK	238	broad.mit.edu	37	2	29449808	29449808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	ALK,left_upper_lobe,carcinoma,+1,1	ALK	NM_004304	exon18	c.A3047G	p.E1016G	CCATCCTCAGCCA		79	3	0.04	84	0	0		533	1	0	0				
KANSL1L	151050	mdanderson.org	37	2	210894633	210894633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_152519	exon10	c.C2165A	p.T722N	AGTTTAGTTCTTT		50	3	0.06	87	0	0				0	0				
RQCD1	9125	broad.mit.edu;mdanderson.org	37	2	219458920	219458920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	RQCD1	NM_001271634	exon9	c.G917T	p.R306L	CGAAACGCTGGCT		141	5	0.04	136	0	0		32		40	0	0.00			
USP40	55230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	234394589	234394589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_018218	exon28	c.A3265G	p.I1089V	CAGGGATGCGCAC		114	11	0.10	140	0	0				1	0	0.00			
RBM44	375316	mdanderson.org	37	2	238738115	238738115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001080504	exon13	c.G2859T	p.E953D	TTCTGAGCAAGAC		126	5	0.04	155	0	0				0	0				
ZNF512B	57473	mdanderson.org	37	20	62595260	62595260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_020713	exon9	c.C1487A	p.P496H	TCTTCAGGGCCAC		47	3	0.06	41	0	0				0	0				
KRTAP10-2	386679	mdanderson.org	37	21	45970730	45970730	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_198693	exon1	c.G612T	p.G204G	GGAAGCCCCAGAG		62	3	0.05	32	0	0				2	0	0.00			
MIR658	724028	mdanderson.org	37	22	38240339	38240339	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	CAGCGAGCTGGCG		23	3	0.13	23	0	0				1	0	0.00			
CPT1B	1375	mdanderson.org	37	22	51016211	51016211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001145135	exon2	c.G134A	p.R45H	TTGATGCGGATCA		58	3	0.05	44	0	0				8	0	0.00			
SLC4A7	9497	mdanderson.org	37	3	27493948	27493948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001258379	exon2	c.C90A	p.S30R	AGTTGAGCTAGTT		46	3	0.07	50	0	0				0	0				
ACTR8	93973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53910015	53910015	+	Missense_Mutation	SNP	C	C	T	rs375966881		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_022899	exon7	c.G871A	p.V291I	AGCATACACTTGT		159	24	0.15	192	0	0				25	9	0.36			
LEKR1	389170	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	156763256	156763256	+	Missense_Mutation	SNP	C	C	A	rs150686576	alternate_allele	TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	LEKR1	NM_001004316	exon13	c.C1796A	p.P599Q	TCTCACCGTGTTC		146	14	0.10	162	1	0.0061728395		66		0	0				
LYAR	55646	mdanderson.org	37	4	4285380	4285380	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001145725	exon3	c.C90A	p.C30X	AGAAAGGCATTCA		29	3	0.10	42	0	0				103	0	0.00			
BMP2K	55589	broad.mit.edu	37	4	79792085	79792085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	BMP2K_ENST00000502871,NS,carcinoma,0,7	BMP2K	NM_017593	exon11	c.G1380C	p.Q460H	TCACCAGCAGCAG		47	4	0.09	57	0	0		169	7	3	0	0.00			
TRIM23	373	broad.mit.edu	37	5	64905170	64905170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	TRIM23	NM_033228	exon6	c.G944A	p.R315H	TTTTCACGAACAT		227	6	0.03	265	0	0		73		0	0				
PCDHB4	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140501959	140501959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	PCDHB4	NM_018938	exon1	c.G379T	p.D127Y	ATAAATGATCACT		126	27	0.21	127	1	0.0078740157		177		0	0				
FAM114A2	10827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	153381928	153381928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_018691	exon11	c.G1139A	p.R380Q	AGGCTCCGGATTG		174	9	0.05	163	0	0				14	1	0.07			
MIR2113	0	broad.mit.edu	37	6	98472767	98472767	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	ATATGTAAAAAAA		6	2	0.33	10	0	0				0	0				
PRKAR1B	5575	mdanderson.org	37	7	624155	624155	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_002735	exon8	c.C759A	p.V253V	GATGGAGACCTTG		43	3	0.07	54	0	0				208	0	0.00			
CARD11	84433	mdanderson.org	37	7	2962882	2962882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_032415	exon16	c.C2026A	p.L676I	AGGTGAGGCTGTC		31	3	0.10	31	0	0				18	0	0.00			
MPP6	51678	mdanderson.org	37	7	24705705	24705705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_016447	exon9	c.G949T	p.A317S	AGAAATGCAGGTA		36	3	0.08	45	0	0				1	0	0.00			
TRRAP	8295	broad.mit.edu	37	7	98601961	98601961	+	Silent	SNP	G	G	A	rs377353131		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	TRRAP_ENST00000359863,NS,carcinoma,+1,2	TRRAP	NM_001244580	exon67	c.G10416A	p.S3472S	TTTCTCGGCACAG		196	5	0.03	145	0	0		863	2	21	1	0.05	rescued with RNA-seq		
TMEM55A	55529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92033608	92033608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_018710	exon2	c.C131A	p.A44D	GCAATGGCTGTAT		56	9	0.16	49	0	0				5	0	0.00			
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	144991455	144991455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_201380	exon32	c.G12945T	p.W4315C	CTCCTCCCACTCG		33	4	0.12	43	0	0				147	36	0.24			
.	0	broad.mit.edu	37	9	66465300	66465300	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	TTTAGCACCCGCT		7	2	0.29	3	0	0				1	0	0.00			
VSIG4	11326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	65253547	65253547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001100431	exon2	c.G181T	p.G61C	CTGAGCCACGTTG		179	54	0.30	153	0	0				5	0	0.00			
NXF4	55999	hgsc.bcm.edu	37	X	101819124	101819124	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	TCTCCTGTCTCTC		105	8	0.08	83	0	0				0	0				
MMGT1	93380	broad.mit.edu	37	X	135055906	135055906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	MMGT1	.	.	.	.	GGCGGGTGTCCGC		94	20	0.21	62	14	0.2258064516		14		0	0				
BRCC3	79184	broad.mit.edu	37	X	154348401	154348401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	BRCC3	NM_024332	exon11	c.G927T	p.M309I	GCTTATGCAAGAA		150	4	0.03	100	0	0		44		6	0	0.00			
UNC93B1	81622	mdanderson.org	37	11	67770593	67770593	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	ATACTTCACCTCG		51	3	0.06	51	0	0				21	0	0.00			
PCSK6	5046	mdanderson.org	37	15	101922323	101922323	+	Nonsense_Mutation	SNP	A	A	T	rs1058260	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	GGCCACACACATG		44	3	0.07	85	0	0				5	0	0.00			
