Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CHD5	26038	mdanderson.org	37	1	6185281	6185281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_015557	exon29	c.A4273G	p.N1425D	GGGCATTGAAGCC		51	3	0.06	28	0	0				0	0				
VWA5B1	127731	broad.mit.edu	37	1	20669623	20669623	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	VWA5B1	NM_001039500	exon16	c.A2363C	p.D788A	ACTGGGACCCCCC		165	28	0.17	91	21	0.2307692308		44		0	0				
AIM1L	55057	hgsc.bcm.edu	37	1	26671719	26671719	+	Missense_Mutation	SNP	C	C	T	rs201245727		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001039775	exon2	c.G1430A	p.R477Q	TCCTTCCGGGTGG		43	7	0.16	23	0	0				0	0				
RPS6KA1	6195	broad.mit.edu	37	1	26898009	26898009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	RPS6KA1	NM_001006665	exon17	c.C1687T	p.R563C	TGCCTGCGCATCT		273	6	0.02	185	0	0		65		78	0	0.00			
GPATCH3	63906	mdanderson.org	37	1	27226507	27226507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_022078	exon1	c.C427A	p.L143I	GCCGAAGTCTGCG		114	5	0.04	69	0	0				47	0	0.00			
DNASE2B	58511	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	84880407	84880407	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	DNASE2B	NM_021233	exon6	c.C942T	p.G314G	AAAGGGCACCAAA		308	12	0.04	253	0	0		40		0	0				
WDR63	126820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	85573731	85573731	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145172	exon15	c.G1569A	p.W523X	TTTTTGGGATATT		56	14	0.25	68	0	0				0	0				
SEC22B	9554	broad.mit.edu	37	1	145109259	145109260	+	RNA	INS	-	-	A	rs11386827	bycluster;by1000genomes	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	CCAGCCCGGGGGC		12	5	0.42	5	0	0				0	0				
NBPF10	100132406	broad.mit.edu	37	1	145293269	145293269	+	Splice_Site	SNP	G	G	A	rs75226570		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	NBPF10	.	.	.	.	ACAACAGTAAGTT		62	6	0.10	41	1	0.0243902439		221		0	0				
ETV3L	440695	broad.mit.edu	37	1	157062558	157062558	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	ETV3L	NM_001004341	exon5	c.C969A	p.G323G	ATCCAGGCCTCCC		212	4	0.02	132	0	0		73		1	0	0.00			
C1orf114	57821	mdanderson.org	37	1	169390745	169390745	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_021179	exon3	c.A924G	p.S308S	TCGATCTGAGTTG		131	5	0.04	93	0	0				2	0	0.00			
TBCE	6905	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	235577756	235577756	+	Missense_Mutation	SNP	C	C	G	rs144747353	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_003193	exon4	c.C194G	p.T65R	ACCCGACAGGAGG		59	7	0.12	70	0	0				40	10	0.25			
FANK1	92565	mdanderson.org	37	10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	rs202109621		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA		30	4	0.13	36	2	0.0555555556				2	0	0.00			
TNNI2	7136	mdanderson.org	37	11	1862339	1862339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001145841	exon5	c.G355T	p.A119S	ATGTCGGCCGATG		29	3	0.10	91	0	0				4	0	0.00			
NLRP14	338323	broad.mit.edu	37	11	7081206	7081206	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	NLRP14	NM_176822	exon9	c.G2715T	p.L905L	GCATCTGGATCTA		214	5	0.02	231	0	0		187		0	0				
KCNK7	10089	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	65363219	65363219	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_005714	exon1	c.C25T	p.R9X	CGTATCGGGACCA		102	6	0.06	111	0	0				0	0				
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	57883073	57883073	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_004990	exon3	c.G224A	p.W75X	CTGGCTGGGAGCA		125	24	0.19	114	0	0				25	3	0.12			
.	0	broad.mit.edu	37	12	66039663	66039664	+	RNA	INS	-	-	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	GAAAAAGAAAAAA		40	8	0.20	23	0	0				10	0	0.00			
SFSWAP	6433	mdanderson.org	37	12	132241113	132241113	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001261411	exon11	c.G1644T	p.V548V	CGAGGTGGGAGCA		87	4	0.05	56	0	0				63	0	0.00			
FAM194B	220081	ucsc.edu	37	13	46170726	46170726	+	Missense_Mutation	SNP	A	A	G	rs28548352	bycluster	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	FAM194B	NM_182542	exon3	c.T415C	p.Y139H	CCAGATACTCTTC		208	34	0.16	218	1	0.004587156		42		0	0				
FAM194B	220081	hgsc.bcm.edu	37	13	46170742	46170742	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	FAM194B,colon,carcinoma,-2,1	FAM194B	NM_182542	exon3	c.T399C	p.H133H	CTCCAGATGCTCT		196	16	0.08	224	1	0.0044642857		-2	1	0	0				
TRIM13	10206	mdanderson.org	37	13	50590789	50590789	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	ATAGTTGCTCCTG		144	8	0.06	204	1	0.0049019608				0	0				
RASA3	22821	mdanderson.org	37	13	114778651	114778651	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	RASA3,colon,carcinoma,-1,1	RASA3	NM_007368	exon15	c.C1479A	p.S493S	GTTGGGGGAGAGA		40	3	0.08	74	0	0		-1	1	2	0	0.00			
IRF2BPL	64207	mdanderson.org	37	14	77493764	77493764	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_024496	exon1	c.G372A	p.Q124Q	TTGTTGCTGCTGC		19	4	0.21	27	0	0				1	0	0.00			
GTF2A1	2957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81670290	81670290	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_015859	exon3	c.T291A	p.P97P	TTGCTGAGGTACT		93	31	0.33	111	0	0				0	0				
SPESP1	246777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	69238736	69238736	+	Missense_Mutation	SNP	G	G	A	rs142183563	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145658	exon2	c.G863A	p.R288Q	TAGGACGAACAAG		170	14	0.08	165	0	0				8	0	0.00			
CYP1A1	1543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	75015057	75015057	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_000499	exon2	c.G382T	p.G128X	CTGGTCCAGAGTC		99	26	0.26	88	0	0				0	0				
METTL9	51108	mdanderson.org	37	16	21611083	21611083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_016025	exon1	c.T29C	p.L10P	TGTGCCTGAGCCT		12	2	0.17	17	0	0				37	0	0.00			
MVP	9961	ucsc.edu;bcgsc.ca	37	16	29853393	29853393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	MVP	NM_017458	exon10	c.G1594T	p.A532S	GAAACGGCGGATC		31	4	0.13	26	0	0		80		58	0	0.00			
PRSS36	146547	mdanderson.org	37	16	31154157	31154157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001258290	exon9	c.G1258T	p.V420L	GGTTCACGGGCGT		41	3	0.07	34	0	0				0	0				
SNX20	124460	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50707354	50707354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	SNX20	NM_182854	exon4	c.C914A	p.T305N	TTCAGGGTGATGC		74	17	0.23	71	1	0.014084507		50		1	0	0.00			
COG8	84342	mdanderson.org	37	16	69364875	69364875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_032382	exon5	c.C1706A	p.A569E	CCCAGCGCCTGGT		93	5	0.05	91	0	0				18	0	0.00			
.	0	broad.mit.edu	37	16	90161168	90161168	+	RNA	SNP	T	T	G	rs371109645	alternate_allele	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	CTGTCCTCCGAGT		18	3	0.17	14	0	0				1	1	1.00			
TNK1	8711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7290430	7290430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001251902	exon9	c.G1369T	p.G457C	CACAGAGGCACCC		124	7	0.06	142	0	0				6	0	0.00			
.	0	broad.mit.edu	37	17	20459719	20459719	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	ATATATATATATA		68	15	0.22	188	1	0.0053191489				0	0				
FLJ36000	0	broad.mit.edu	37	17	21906824	21906825	+	RNA	INS	-	-	TT	rs58465113	alternate_allele	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	GTGTGTGTGTGTG		30	11	0.37	16	0	0				0	0				
LOC644669	0	broad.mit.edu	37	18	15322956	15322962	+	RNA	DEL	TTTATAC	TTTATAC	-	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	TTTATAC	TTTATAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	TAAAAATTTATAC		7	2	0.29	11	0	0				0	0				
MBD1	4152	mdanderson.org	37	18	47806263	47806263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_015845	exon2	c.T100C	p.Y34H	GGTAATAGGTGTC		35	3	0.09	36	0	0				2	0	0.00			
ZNF236	7776	mdanderson.org	37	18	74580818	74580818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_007345	exon4	c.A535G	p.R179G	AAAATTAGGTATG		18	2	0.11	28	0	0				0	0				
ATP9B	374868	mdanderson.org	37	18	76870489	76870489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_198531	exon3	c.T428C	p.F143S	ATGTGTTTACCTT		46	3	0.07	70	0	0				2	0	0.00			
GRIN3B	116444	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	1004822	1004822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_138690	exon3	c.C1322T	p.A441V	GCCCAGCGGGGCA		84	4	0.05	77	0	0				0	0				
PNPLA6	10908	mdanderson.org	37	19	7615244	7615244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001166111	exon17	c.G1902T	p.M634I	CAGGATGTCGCCC		50	3	0.06	51	0	0				13	0	0.00			
MAP1S	55201	mdanderson.org	37	19	17838171	17838171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_018174	exon5	c.C1978T	p.R660W	CCACTGCGGGGCG		24	3	0.13	20	0	0				77	0	0.00			
ZNF208	7757	mdanderson.org	37	19	22157461	22157461	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_007153	exon4	c.G375A	p.V125V	TTTGTGCACCTTA		114	5	0.04	116	0	0				2	0	0.00			
DMKN	93099	mdanderson.org	37	19	35991442	35991442	+	Missense_Mutation	SNP	T	T	A	rs909072	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_033317	exon12	c.A1280T	p.D427V	TGATCGTCTCTGC		72	3	0.04	112	0	0				69	0	0.00			
KLC3	147700	mdanderson.org	37	19	45849918	45849918	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_177417	exon3	c.G375C	p.E125D	GGAGGAGACGCAG		18	2	0.11	41	0	0				2	0	0.00			
AP2A1	160	mdanderson.org	37	19	50295218	50295218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_130787	exon5	c.G500T	p.S167I	AGCAGAGTGCGGC		50	3	0.06	30	0	0				31	0	0.00			
ZNF525	170958	broad.mit.edu	37	19	53879043	53879043	+	Silent	SNP	T	T	C	rs62115350		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	ZNF525	.	.	.	.	CAGGGATGTGGCC		50	4	0.08	41	2	0.0487804878		35		1	0	0.00			
.	400986	ucsc.edu	37	2	96643871	96643871	+	Silent	SNP	T	T	C	rs201215924		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	ENSG00000174501,NS,carcinoma,0,2	.	.	.	.	.	CTTACCTGGATTG		89	13	0.15	126	10	0.0793650794			2	0	0				
WDR33	55339	mdanderson.org	37	2	128480869	128480869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_018383	exon12	c.C1249A	p.L417I	GGTTTAGATTATA		103	5	0.05	108	0	0				4	0	0.00			
TLK1	9874	broad.mit.edu	37	2	171911637	171911637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	TLK1	NM_012290	exon7	c.C595A	p.H199N	TAGGGTGGTCCCC		568	6	0.01	602	1	0.0016611296		134		6	0	0.00			
FAM182B	728882	hgsc.bcm.edu	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	FAM182B,colon,carcinoma,0,1	FAM182B	.	.	.	.	CTGCAGCCTTCCT		65	6	0.09	70	2	0.0285714286		0	1	4	0	0.00			
ZBTB46	140685	mdanderson.org	37	20	62421958	62421958	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_025224	exon2	c.C153A	p.G51G	GCTGCTGCCCAGC		28	3	0.11	39	0	0				6	0	0.00			
.	253143	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32072978	32072978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	CTGTCAGTGCTCG		109	18	0.17	109	0	0				0	0				
.	253143	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32072995	32072995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	GCTAGAATCCAGG		91	16	0.18	103	0	0				0	0				
CNTN4	152330	broad.mit.edu	37	3	3067877	3067877	+	Silent	SNP	G	G	T	rs375250470	alternate_allele	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	CNTN4_ENST00000418658,NS,carcinoma,0,2	CNTN4	NM_175607	exon15	c.G1578T	p.S526S	TCACTCGCTAGAC		216	5	0.02	176	1	0.0056818182		335	2	0	0				
DCUN1D4	23142	broad.mit.edu	37	4	52777312	52777312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	DCUN1D4	NM_001040402	exon9	c.T692C	p.L231P	GGCCCCTTTTTCC		128	4	0.03	130	1	0.0076923077		26		5	0	0.00			
ADH4	127	broad.mit.edu	37	4	100052899	100052899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	ADH4	NM_000670	exon6	c.C599A	p.T200N	GCACAAGTCGAAC		66	3	0.05	70	0	0		35		0	0				
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138450831	138450831	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_019035	exon1	c.T2412C	p.S804S	CACCAAACTGTTG		112	55	0.49	123	0	0				1	0	0.00			
RBM46	166863	mdanderson.org	37	4	155718042	155718042	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_144979	exon2	c.C138T	p.G46G	ATTTGGCGGTCCT		39	3	0.08	52	0	0				1	0	0.00			
CAMK4	814	broad.mit.edu	37	5	110819728	110819728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	CAMK4,NS,carcinoma,0,1	CAMK4	NM_001744	exon11	c.C986T	p.A329V	AGGCAGCGGTGAA		143	4	0.03	130	0	0		77	1	0	0				
HLA-H	3136	hgsc.bcm.edu	37	6	29856882	29856882	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	CAGCCTCCACTCA		66	5	0.08	42	0	0				2	0	0.00			
TNXB	7148	mdanderson.org	37	6	32064279	32064279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_019105	exon3	c.G1351T	p.V451F	TGCAAACACACAC		19	2	0.11	17	0	0				0	0				
DAAM2	23500	mdanderson.org	37	6	39869697	39869697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001201427	exon25	c.C3091T	p.R1031C	GCCCTGCGCTCTG		47	3	0.06	44	0	0				0	0				
.	0	broad.mit.edu	37	6	161326647	161326648	+	RNA	INS	-	-	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	TCTATTGTTTTTT		6	2	0.33	9	0	0				0	0				
PMS2	5395	broad.mit.edu	37	7	6026444	6026444	+	Missense_Mutation	SNP	T	T	C	rs267608167		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	PMS2	NM_000535	exon11	c.A1952G	p.K651R	CAAATCTTTGCCC		503	5	0.01	388	1	0.0025773196		88		15	0	0.00			
EZH2	0	broad.mit.edu	37	7	148512600	148512600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	EZH2	NM_004456	exon13	c.A1544G	p.K515R	TAACCCTTTTTCA		394	6	0.02	315	0	0		823		87	0	0.00			
MLLT3	4300	hgsc.bcm.edu	37	9	20414373	20414373	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	MLLT3,NS,carcinoma,0,4	MLLT3	NM_004529	exon5	c.C471T	p.S157S	GCTGCTGCTACTG		60	5	0.08	49	1	0.0204081633		0	4	1	0	0.00			
GRHPR	9380	mdanderson.org	37	9	37428556	37428556	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_012203	exon5	c.G480T	p.G160G	CATCGGGCTGGGG		50	3	0.06	29	0	0				198	1	0.01			
.	100289027	bcgsc.ca	37	9	45363836	45363836	+	RNA	SNP	G	G	A	rs199519540	bycluster	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	CAGAGCGGAACGC		33	7	0.21	34	0	0				0	0				
PRRC2B	84726	broad.mit.edu	37	9	134305549	134305550	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	GC	GC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	PRRC2B	NM_013318	exon1	c.C19G	p.Q7E	TTTGGGGCAAATT		217	6	0.03	140	0	0		266		4	0	0.00			
.	0	bcgsc.ca	37	X	48306759	48306759	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	GATGGTAATTGTG		46	19	0.41	36	1	0.0277777778				0	0				
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	118774680	118774680	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145802	exon6	c.G762C	p.R254R	ATACTGCCGCGCC		149	12	0.08	78	0	0				126	6	0.05			
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134993829	134993829	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_018666	exon18	c.G2238C	p.E746D	ACCAGAGCTGATA		255	49	0.19	141	0	0				0	0				
