Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
NBPF10	100132406	hgsc.bcm.edu	37	1	145293535	145293535	+	Missense_Mutation	SNP	C	C	G	rs55936365		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	NBPF10,NS,carcinoma,0,2	NBPF10	NM_001039703	exon1	c.C130G	p.L44V	TGTTTTCTAACTC		93	5	0.05	69	1	0.0144927536		0	2	0	0				
PIP5K1A	8394	broad.mit.edu	37	1	151205142	151205142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	PIP5K1A_ENST00000368888,NS,carcinoma,0,1	PIP5K1A	NM_001135638	exon7	c.C602A	p.A201E	AAGAGGCGGAATT		85	4	0.05	82	0	0		61	1	9	0	0.00			
.	0	broad.mit.edu	37	1	204363979	204363980	+	RNA	INS	-	-	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	.	.	.	.	GTTTTTCAAAAAA		8	3	0.38	5	0	0				0	0				
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225528369	225528369	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001373	exon67	c.G10365A	p.E3455E	ACTAGAGGAAAAA		277	71	0.26	293	0	0				0	0				
EGLN1	54583	mdanderson.org	37	1	231557492	231557492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_022051	exon1	c.G143A	p.R48H	TCCTGACGCTGGT		15	3	0.20	16	0	0				4	0	0.00			
SCCPDH	51097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	246927615	246927615	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_016002	exon10	c.A1058T	p.K353M	CAGATAAGAACAA		83	19	0.23	97	0	0				173	45	0.26			
NET1	10276	mdanderson.org	37	10	5454763	5454763	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001047160	exon1	c.C108A	p.S36S	CACCTCCGGGTCG		19	3	0.16	20	0	0				0	0				
FRMD4A	55691	mdanderson.org	37	10	13698996	13698996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_018027	exon22	c.G2593A	p.A865T	ACTGAGCCTTGAC		9	2	0.22	8	0	0				2	0	0.00			
ATAD1	84896	mdanderson.org	37	10	89530769	89530769	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_032810	exon7	c.T720C	p.P240P	GTCCTGAGGACGA		57	3	0.05	100	0	0				50	0	0.00			
ATAD1	84896	hgsc.bcm.edu	37	10	89544257	89544257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_032810	exon5	c.C553A	p.Q185K	ATGGTTGTAGCTT		98	4	0.04	126	0	0				29	0	0.00			
ZRANB1	54764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126631712	126631712	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_017580	exon1	c.C650G	p.P217R	GATCACCTCCTGC		72	10	0.14	88	0	0				21	5	0.24			
MUC6	4588	bcgsc.ca	37	11	1016871	1016871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	MUC6	NM_005961	exon31	c.C5930A	p.P1977H	GAGAAGGGACTGC		393	12	0.03	459	10	0.0217864924		408		0	0				
QSER1	79832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32955965	32955965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001076786	exon4	c.A2774G	p.Q925R	GAAATCAGGTTAC		156	38	0.24	167	0	0				1	1	1.00			
CHST1	8534	mdanderson.org	37	11	45671900	45671900	+	Missense_Mutation	SNP	C	C	T	rs147129669	alternate_allele	TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_003654	exon4	c.G574A	p.V192M	CCGCCACGGTCAG		22	2	0.09	20	0	0				11	0	0.00			
DGKZ	8525	hgsc.bcm.edu	37	11	46394020	46394020	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001105540	exon12	c.C1534A	p.R512R	AATCCCCGACAAG		100	4	0.04	135	0	0				34	0	0.00			
SYVN1	84447	broad.mit.edu	37	11	64898172	64898173	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	SYVN1	NM_032431	exon11	c.1065_1066insCC	p.P355fs	GGGGGCAGGGGGT		18	7	0.39	23	0	0		55		7	0	0.00			
EPS8	2059	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	15803897	15803897	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_004447	exon14	c.C1294T	p.R432X	GGAATCGTGGAAC		461	25	0.05	259	0	0				9	0	0.00			
HNRNPA1P10	664709	hgsc.bcm.edu;ucsc.edu	37	12	54676581	54676581	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	.	.	.	.	TTCTTACAGGTGG		56	7	0.13	65	0	0				3	2	0.67			
EP400	57634	broad.mit.edu;mdanderson.org	37	12	132527894	132527894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	EP400	NM_015409	exon33	c.G6253T	p.A2085S	AAGTCCGCACAGG		78	4	0.05	101	0	0		370		4	0	0.00			
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23909053	23909053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_014363	exon10	c.G8962T	p.D2988Y	TCATGTCTTCGTG		105	18	0.17	107	0	0				1	0	0.00			
EDDM3B	64184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21238469	21238469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_022360	exon2	c.A160G	p.M54V	GTCCTCATGAGAG		189	23	0.12	230	0	0				0	0				
PSME2	5721	mdanderson.org	37	14	24612675	24612675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_002818	exon11	c.C663A	p.S221R	GTTGCTGCTGATG		96	4	0.04	99	1	0.0101010101				797	0	0.00			
MAPKBP1	23005	mdanderson.org	37	15	42114620	42114620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001128608	exon27	c.G3247T	p.G1083W	GCTCCAGGTGTGG		43	3	0.07	65	0	0				2	0	0.00			
PLA2G4F	255189	broad.mit.edu	37	15	42439919	42439920	+	Frame_Shift_Ins	INS	-	-	C	rs139732075	bycluster;by1000genomes	TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	PLA2G4F	NM_213600	exon12	c.1101_1102insG	p.R367fs	CATGGCTCGGGTT		90	11	0.12	109	0	0		75		2	0	0.00			
PIGQ	9091	hgsc.bcm.edu;bcgsc.ca	37	16	629151	629151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_148920	exon7	c.G1306A	p.V436M	CAGCGCGTGGACT		121	6	0.05	108	0	0				28	0	0.00			
PKD1	5310	mdanderson.org	37	16	2152493	2152493	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001009944	exon25	c.G9090A	p.L3030L	GGGCAGCAGCCCC		32	3	0.09	36	0	0				16	0	0.00			
RPH3AL	9501	broad.mit.edu	37	17	171132	171133	+	In_Frame_Ins	INS	-	-	CCG	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	RPH3AL	NM_006987	exon4	c.152_153insCGG	p.E51delinsAE	TCCACCTCCGCCG		59	7	0.12	62	0	0		18		1	0	0.00			
CLUH	23277	mdanderson.org	37	17	2595123	2595123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_015229	exon24	c.G3604A	p.V1202M	GGGCCACGGCCTG		50	3	0.06	42	0	0				186	0	0.00			
PITPNM3	83394	mdanderson.org	37	17	6358884	6358884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_031220	exon20	c.G2699A	p.R900H	ATCATGCGCGAGT		34	3	0.09	35	0	0				0	0				
ARSG	22901	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	66339910	66339910	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	ARSG,colon,carcinoma,+1,1	ARSG	NM_001267727	exon3	c.G384A	p.A128A	GCAGGCGGGTTAC		117	6	0.05	100	0	0		1	1	0	0				
RAB37	326624	mdanderson.org	37	17	72733227	72733227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001163989	exon1	c.C79T	p.R27W	ACCCTGCGGCTCT		45	3	0.07	41	0	0				1	0	0.00			
SLC38A10	124565	mdanderson.org	37	17	79257226	79257226	+	Silent	SNP	G	G	T	rs141775697	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001037984	exon4	c.C340A	p.R114R	ACAGCCGGGCAAA		59	3	0.05	52	0	0				21	0	0.00			
MRI1	84245	mdanderson.org	37	19	13879176	13879176	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_032285	exon3	c.T375C	p.R125R	CAGACGTGAAACG		55	3	0.05	58	0	0				16	0	0.00			
PSG4	5672	mdanderson.org	37	19	43699297	43699297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_002780	exon4	c.C838A	p.P280T	CAGGGAGGCTCTG		50	3	0.06	58	0	0				0	0				
SYMPK	8189	broad.mit.edu	37	19	46321272	46321272	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	SYMPK	NM_004819	exon23	c.A3026C	p.Y1009S	CGGGGGTACATGG		86	19	0.22	78	12	0.1538461538		104		255	9	0.04			
GRWD1	83743	mdanderson.org	37	19	48956276	48956276	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_031485	exon7	c.C1335T	p.S445S	CATCAGCGTCTGA		58	3	0.05	63	0	0				109	0	0.00			
AHCY	191	mdanderson.org	37	20	32868923	32868923	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_000687	exon10	c.T1216C	p.L406L	TGGTCAACTTCAC		66	3	0.05	49	0	0				627	1	0.00			
L3MBTL1	26013	broad.mit.edu	37	20	42169675	42169675	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	L3MBTL1	NM_032107	exon22	c.A2430G	p.K810K	AGGAAAAGGCATC		145	4	0.03	132	0	0		105		11	0	0.00			
ZNF512B	57473	mdanderson.org	37	20	62594604	62594604	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_020713	exon12	c.C1812A	p.A604A	GGAGAAGGCAGCC		19	2	0.11	17	0	0				5	0	0.00			
SOX18	54345	mdanderson.org	37	20	62680648	62680648	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_018419	exon1	c.C222T	p.R74R	TTCCCCGCGGCCG		43	3	0.07	36	0	0				20	0	0.00			
BAGE	85319	broad.mit.edu	37	21	11058340	11058340	+	RNA	SNP	A	A	C	rs28617310		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	.	.	.	.	TAAAGGAGAGAAA		207	8	0.04	206	1	0.0048543689				0	0				
BAGE	85319	broad.mit.edu	37	21	11058348	11058348	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	.	.	.	.	AGAAATCTCTTTA		180	7	0.04	174	1	0.0057471264				0	0				
PHF21B	112885	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	45279175	45279175	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	PHF21B	NM_138415	exon13	c.G1387T	p.E463X	TCAACTCCAGGCA		38	5	0.13	41	0	0		61		2	0	0.00			
VGLL4	9686	mdanderson.org	37	3	11606410	11606410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001128219	exon3	c.T356C	p.M119T	AGGCTCATGGTGG		22	4	0.18	32	0	0				17	0	0.00			
ZFYVE20	64145	mdanderson.org	37	3	15115315	15115315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_022340	exon14	c.G2329A	p.A777T	GCTTGGCCAGGGT		51	3	0.06	57	0	0				3	0	0.00			
ZXDC	79364	mdanderson.org	37	3	126180459	126180459	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_025112	exon6	c.C2046A	p.P682P	GGACTGGGGCAGC		140	5	0.04	139	1	0.0071942446				37	0	0.00			
ATR	545	broad.mit.edu	37	3	142222247	142222247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	ATR,colon,carcinoma,+1,1	ATR	NM_001184	exon30	c.C5245A	p.L1749M	TAGACAGCTGACC		549	7	0.01	515	1	0.0019417476		285	1	2	0	0.00			
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	40154443	40154443	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_018177	exon17	c.G5187T	p.T1729T	GATTACGGGGAGA		199	8	0.04	203	0	0				20	0	0.00			
COL25A1	84570	mdanderson.org	37	4	110223132	110223132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_032518	exon2	c.C44A	p.P15H	GATCTGGGCTCCC		33	3	0.09	27	0	0				1	0	0.00			
TRAM1L1	133022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	118006336	118006336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_152402	exon1	c.C214T	p.L72F	AATAGAGGGACTT		114	19	0.17	181	0	0				0	0				
PCDHA9	9752	mdanderson.org	37	5	140229869	140229869	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_031857	exon1	c.G1789C	p.V597L	CGCGCAGTGGACG		43	3	0.07	34	0	0				0	0				
FAM196B	100131897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169309671	169309671	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001129891	exon2	c.A1232T	p.D411V	TGGAGGTCGCAGA		104	14	0.13	143	0	0				0	0				
SSR1	6745	mdanderson.org	37	6	7313285	7313285	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_003144	exon1	c.C69A	p.G23G	GGGGCCGCCTCGG		45	3	0.07	48	0	0				75	0	0.00			
ITPR3	3710	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	33638313	33638313	+	Missense_Mutation	SNP	C	C	T	rs147317574		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	ITPR3	NM_002224	exon19	c.C2401T	p.R801C	TTTGCCCGTCTCT		85	5	0.06	90	0	0		409		0	0				
GTF2IRD2P1	0	broad.mit.edu	37	7	72667516	72667516	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	.	.	.	.	TATGTCAAAAAAT		1005	7	0.01	880	0	0				0	0				
SDC2	6383	mdanderson.org	37	8	97506502	97506502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_002998	exon1	c.G3T	p.M1I	GAATATGCGGCGC		24	2	0.08	32	0	0				32	0	0.00			
AGO2	27161	mdanderson.org	37	8	141551323	141551323	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_012154	exon15	c.C1974A	p.R658R	CTTGAAGCGCGTG		71	4	0.06	82	0	0				12	0	0.00			
TRPM6	140803	mdanderson.org	37	9	77359051	77359051	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_017662	exon32	c.C5094A	p.A1698A	TAAGGAGGCTGAG		58	3	0.05	63	0	0				1	0	0.00			
NUDT10	170685	bcgsc.ca	37	X	51075767	51075767	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	NUDT10	.	.	.	.	AGCAGCTGCGTCG		260	20	0.08	154	2	0.012987013		28		12	0	0.00			
HMGN5	79366	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	80370324	80370324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	HMGN5	NM_030763	exon7	c.G673T	p.D225Y	TTACATCTTTCCC		329	11	0.03	256	0	0		29		32	0	0.00			
ELF4	2000	broad.mit.edu	37	X	129215228	129215228	+	Splice_Site	SNP	A	A	G	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	ELF4	NM_001421	exon3	c.75+2T>C	.	GGCCATACCTGGT		189	3	0.02	148	0	0		67		0	0				
