Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
KIF1B	23095	broad.mit.edu	37	1	10342466	10342466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	KIF1B	NM_183416	exon13	c.G1171A	p.G391R	TCCATGGGGTCCC		166	5	0.03	157	0	0		242		13	1	0.08	rescued with RNA-seq		
THEMIS2	9473	bcgsc.ca	37	1	28206532	28206532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_004848	exon3	c.C613T	p.R205W	ATCCTGCGGCCCC		104	6	0.06	138	0	0				19	0	0.00			
COL16A1	1307	mdanderson.org	37	1	32137261	32137261	+	Splice_Site	SNP	C	C	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001856	exon49	c.3106-1G>T	.	CGGACCCTGCAAA		87	4	0.05	94	0	0				7	0	0.00			
PTPRF	5792	mdanderson.org	37	1	44085236	44085236	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_002840	exon28	c.G4924T	p.E1642X	GAGCTCGAGTTCA		45	3	0.07	56	0	0				252	0	0.00			
SSBP3	23648	broad.mit.edu	37	1	54871665	54871665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	SSBP3	NM_001009955	exon1	c.A17G	p.K6R	GAGCCTTTGCCTT		134	11	0.08	112	1	0.0089285714		65		177	0	0.00			
ACADM	34	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	76228425	76228425	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	ACADM	NM_001127328	exon12	c.C1255G	p.H419D	CGTGAACACATTG		405	62	0.15	408	2	0.0049019608		50		98	19	0.19			
SCAMP3	10067	mdanderson.org	37	1	155230121	155230121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_005698	exon4	c.A388G	p.T130A	ACTTACTAGCTGT		84	4	0.05	46	0	0				313	9	0.03			
ADORA1	134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	203098167	203098167	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001048230	exon2	c.C198T	p.A66A	CCTCGCCATCCTC		191	13	0.07	86	0	0				10	0	0.00			
DUSP10	11221	broad.mit.edu	37	1	221879723	221879723	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	DUSP10,NS,carcinoma,0,1	DUSP10	NM_007207	exon3	c.C897T	p.G299G	GGATGCGCCGCCC		221	6	0.03	177	0	0		64	1	9	0	0.00			
KIF26B	55083	mdanderson.org	37	1	245851505	245851505	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_018012	exon12	c.G5220T	p.L1740L	CCTCCTGGCCAGC		31	3	0.10	20	0	0				9	0	0.00			
CAMK1D	57118	mdanderson.org	37	10	12595239	12595239	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	CAMK1D_ENST00000378847,NS,malignant_melanoma,+2,6	CAMK1D_ENST00000378847	NM_153498	exon2	c.A108G	p.E36E	TTCCGAAGTGGTT		49	3	0.06	74	0	0		2	6	2	0	0.00			
DBX1	120237	mdanderson.org	37	11	20181777	20181777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001029865	exon1	c.G94A	p.A32T	AAAATGCCGACTG		36	3	0.08	21	0	0				0	0				
SLC1A2	6506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	35440503	35440503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_004171	exon1	c.C11T	p.T4M	CCTTCCGTAGATG		160	47	0.29	169	0	0				0	0				
DLG2	1740	hgsc.bcm.edu	37	11	83544668	83544668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	DLG2_ENST00000418306,NS,carcinoma,+1,8	DLG2_ENST00000418306	NM_001142699	exon17	c.C1711A	p.Q571K	GGATCTGGTCTCC		86	5	0.06	91	0	0		1	8	0	0				
NOP2	4839	broad.mit.edu	37	12	6666318	6666318	+	Missense_Mutation	SNP	C	C	A	rs2534700	bycluster;byhapmap;alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	NOP2	NM_001258309	exon17	c.G2379T	p.L793F	CTCTGGCAACTGC		546	10	0.02	228	0	0		44		507	13	0.03			
DDX12P	440081	bcgsc.ca	37	12	9578165	9578165	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	.	.	.	.	GGGACGCTGGCCT		430	71	0.17	144	2	0.0138888889				151	25	0.17			
C12orf40	283461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	40076502	40076502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	C12orf40,NS,carcinoma,+1,1	C12orf40	NM_001031748	exon8	c.A776G	p.Y259C	CAGACTACATTAC		101	24	0.24	79	0	0		1	1	0	0				
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	40757322	40757322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_198578	exon48	c.C7147T	p.L2383F	GAAAAACTCTGTG		131	32	0.24	118	0	0				6	0	0.00			
CLIP1	6249	mdanderson.org	37	12	122819222	122819222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001247997	exon13	c.G2599A	p.A867T	AGACTGCCTCCTC		40	3	0.08	25	0	0				36	0	0.00			
.	0	bcgsc.ca	37	12	126996133	126996133	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	.	.	.	.	AAACCAGCAAATG		30	5	0.17	33	0	0				0	0				
ATP8A2	51761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26133183	26133183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	ATP8A2	NM_016529	exon14	c.G1336T	p.A446S	AGCATTGCCGGAG		71	7	0.10	90	0	0		181		0	0				
.	0	broad.mit.edu	37	14	20146543	20146544	+	RNA	INS	-	-	GTCCC	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	.	.	.	.	CTCAGCAGAACAG		71	8	0.11	44	0	0				0	0				
CPNE6	9362	broad.mit.edu	37	14	24546820	24546820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	CPNE6,NS,carcinoma,0,1	CPNE6	NM_006032	exon16	c.G1555A	p.A519T	GCACTCGCCAAGT		99	4	0.04	107	1	0.0093457944		40	1	8	0	0.00			
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	36194331	36194332	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	RALGAPA1	NM_014990	exon14	c.1765_1766del	p.589_589del	CCGTGACTCTGAG		241	38	0.16	195	0	0		289		11	0	0.00			
ZFYVE19	84936	mdanderson.org	37	15	41104995	41104995	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001077268	exon7	c.C925T	p.L309L	AGACTGCTGGCTG		38	3	0.08	30	0	0				43	0	0.00			
ONECUT1	3175	broad.mit.edu	37	15	53082011	53082011	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	ONECUT1	NM_004498	exon1	c.71delC	p.P24fs	TCGGCAGGGGCGG		6	2	0.33	4	0	0		48		1	0	0.00			
.	0	broad.mit.edu	37	15	84957462	84957466	+	RNA	DEL	GTGGC	GTGGC	-	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	GTGGC	GTGGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	.	.	.	.	TGTAGGGTGGCAT		6	2	0.33	11	0	0				0	0				
SLX4	84464	mdanderson.org	37	16	3639795	3639795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_032444	exon12	c.C3844A	p.L1282M	CGGCCAGCCCGCT		38	3	0.08	50	0	0				11	0	0.00			
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	20796358	20796358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_005622	exon8	c.C1072T	p.P358S	ATTACCCCTGACG		80	7	0.09	99	0	0				19	2	0.11			
TGFB1I1	7041	mdanderson.org	37	16	31484827	31484827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	TGFB1I1_ENST00000394863,NS,carcinoma,0,2	TGFB1I1_ENST00000394863	NM_001042454	exon2	c.C79T	p.R27C	AAAGAGCGCCCTG		46	3	0.07	60	0	0		0	2	54	0	0.00			
COG4	25839	hgsc.bcm.edu	37	16	70515315	70515315	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015386	exon18	c.C2182A	p.R728R	TGTCTCGGATGGT		74	4	0.05	89	0	0				162	0	0.00			
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	4016010	4016010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015113	exon5	c.C959T	p.A320V	CCTACAGCTACTG		118	8	0.07	121	0	0				8	0	0.00			
MRPL45	84311	broad.mit.edu	37	17	36453192	36453192	+	Missense_Mutation	SNP	T	T	G	rs9890011	bycluster;by2hit2allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	MRPL45	NM_032351	exon1	c.T43G	p.F15V	TCGAGGTTTTTGG		93	14	0.15	69	1	0.0144927536		27		123	6	0.05			
MRC2	9902	broad.mit.edu	37	17	60769610	60769610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	MRC2	NM_006039	exon30	c.C4238T	p.A1413V	ACCCAGCGGCCCT		155	4	0.03	124	2	0.0161290323		126		244	0	0.00			
CD79B	974	mdanderson.org	37	17	62007156	62007156	+	Missense_Mutation	SNP	C	C	A	rs148032848	alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	CD79B,colon,carcinoma,0,1	CD79B	NM_001039933	exon4	c.G526T	p.V176L	TAGGCACGATGAT		26	2	0.08	19	0	0		0	1	15	0	0.00			
.	100132166	bcgsc.ca	37	18	80204	80204	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	.	.	.	.	GGGGCCAAGTCCT		41	6	0.15	46	2	0.0434782609				1	0	0.00			
AP3D1	8943	mdanderson.org	37	19	2121000	2121000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001261826	exon14	c.G1342A	p.V448M	CCTTCACGCGGAT		38	3	0.08	33	0	0				160	0	0.00			
LINGO3	645191	mdanderson.org	37	19	2291166	2291166	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001101391	exon2	c.C610A	p.R204R	GCAGCCGCAGGGC		40	3	0.08	28	0	0				1	0	0.00			
PNPLA6	10908	broad.mit.edu	37	19	7626396	7626396	+	Missense_Mutation	SNP	G	G	A	rs368661376		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	PNPLA6	NM_001166111	exon34	c.G4076A	p.R1359Q	TTCTCCGGCAACG		82	5	0.06	54	0	0		163		69	0	0.00			
ASNA1	439	mdanderson.org	37	19	12856212	12856212	+	Missense_Mutation	SNP	G	G	T	rs373752704	alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_004317	exon3	c.G331T	p.V111L	CTGGGCGTGGCGG		30	3	0.10	29	0	0				430	0	0.00			
CPAMD8	27151	mdanderson.org	37	19	17004142	17004142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015692	exon42	c.C5576T	p.A1859V	GGCCCGGCTGTGA		15	2	0.13	22	0	0				3	0	0.00			
MAG	4099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35800891	35800891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_080600	exon8	c.G1346A	p.R449H	CATCGCGCAATGT		79	11	0.14	50	0	0				7	0	0.00			
DHDH	27294	mdanderson.org	37	19	49438356	49438356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_014475	exon2	c.G190T	p.D64Y	GCCAAGGACCCGA		33	3	0.09	24	0	0				0	0				
ZIM3	0	broad.mit.edu	37	19	57649920	57649920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	ZIM3	NM_052882	exon3	c.A62G	p.E21G	TGCCACTCCCCCT		90	4	0.04	98	0	0		107		0	0				
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86707433	86707433	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001146688	exon16	c.T2460C	p.P820P	ATCTCCTCTAAAC		79	6	0.08	75	0	0				69	8	0.12			
NCAPH	23397	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	97033084	97033084	+	Silent	SNP	G	G	T	rs149403246	alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015341	exon15	c.G1971T	p.A657A	GACAGCGCTCTCC		121	5	0.04	94	0	0				121	0	0.00			
NPAS2	4862	mdanderson.org	37	2	101587513	101587513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_002518	exon12	c.G1117T	p.A373S	TCCGAGGCCCTCC		130	5	0.04	105	0	0				5	0	0.00			
SH3RF3	344558	broad.mit.edu	37	2	110065794	110065794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	SH3RF3	NM_001099289	exon8	c.T1997C	p.I666T	CGGCCATCCCCCT		337	5	0.01	265	4	0.0150943396		62		3	0	0.00			
TTN	7273	mdanderson.org	37	2	179490019	179490019	+	Silent	SNP	G	G	A	rs55973744	bycluster;byfrequency;by1000genomes	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001267550	exon241	c.C44529T	p.H14843H	GTTGGCGTGAGTT		54	3	0.06	61	0	0	0.01			1	0	0.00			
DNAH7	56171	mdanderson.org	37	2	196682528	196682528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_018897	exon50	c.C9317A	p.T3106N	TCAGGGGTTATCA		109	5	0.05	64	0	0				3	0	0.00			
C2orf62	375307	mdanderson.org	37	2	219227558	219227558	+	Missense_Mutation	SNP	G	G	T	rs201618489	by1000genomes;alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	C2orf62,NS,carcinoma,+1,1	C2orf62	NM_198559	exon6	c.G563T	p.R188L	GGCGGCGGATGGT		44	3	0.07	27	0	0		1	1	11	0	0.00			
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230668944	230668944	+	Splice_Site	SNP	C	C	G	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_004238	exon19	c.2426-1G>C	.	ATCCACCTATTAC		258	36	0.14	243	0	0				1	1	1.00			
PDYN	5173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1961480	1961480	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001190898	exon4	c.A254C	p.K85T	ACCGACTTGCTCC		144	48	0.33	177	0	0				0	0				
PLCB1	23236	mdanderson.org	37	20	8705341	8705341	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015192	exon16	c.C1620T	p.G540G	AGAAATGTCTAAT		71	4	0.06	77	0	0				9	0	0.00			
.	0	broad.mit.edu	37	20	29572324	29572325	+	RNA	DEL	AC	AC	-	rs370232057	alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	AC	AC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	.	.	.	.	ACACAAACACACA		9	3	0.33	8	0	0				0	0				
TOP1	7150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	39751878	39751894	+	Frame_Shift_Del	DEL	ACCCAGCGGGAGAAGTT	ACCCAGCGGGAGAAGTT	-	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	ACCCAGCGGGAGAAGTT	ACCCAGCGGGAGAAGTT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	TOP1	NM_003286	exon21	c.2238_2254del	p.746_752del	AACAAAACCCAGC		94	18	0.19	129	0	0		71		317	0	0.00			
SLC17A9	63910	mdanderson.org	37	20	61584208	61584208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_022082	exon1	c.G26A	p.R9H	AGGCCCGCAGGGA		18	3	0.17	15	0	0				6	0	0.00			
SLC7A4	6545	mdanderson.org	37	22	21383511	21383511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_004173	exon5	c.G1741A	p.V581M	AATACACTGCAAG		29	3	0.10	48	0	0				29	0	0.00			
SUN2	25777	broad.mit.edu	37	22	39132280	39132280	+	Missense_Mutation	SNP	C	C	T	rs200715757	bycluster;by1000genomes	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	SUN2	NM_001199579	exon18	c.G2209A	p.A737T	AGTGGGCGGGCTC		64	5	0.08	75	0	0		59		148	6	0.04			
CAND2	23066	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12856660	12856660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	CAND2	NM_001162499	exon8	c.G1027A	p.D343N	TACAGCGATGACG		113	22	0.19	73	1	0.0136986301		138		22	1	0.05			
.	645715	bcgsc.ca	37	3	39401174	39401174	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	.	.	.	.	CCGTTCTGGTAAA		29	16	0.55	26	0	0				0	0				
TEX264	51368	mdanderson.org	37	3	51737954	51737954	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015926	exon5	c.G864T	p.R288R	GTCACGGCTGGAC		46	3	0.07	31	0	0				168	0	0.00			
ARMC8	25852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137942567	137942567	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	ARMC8	NM_001267041	exon5	c.C427T	p.L143L	GAGCTACTGTATA		99	17	0.17	83	1	0.0120481928		79		55	16	0.29			
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	44449883	44449883	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_198353	exon1	c.G658C	p.V220L	CGCGCACGGTGGT		29	9	0.31	29	0	0				0	0				
BANK1	55024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	102839288	102839288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_017935	exon7	c.C1148A	p.A383E	ACCCCGCACATAT		195	9	0.05	247	0	0				0	0				
PHF17	79960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	129789057	129789057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_199320	exon10	c.G1550T	p.R517L	TTAAACGGTCTGT		63	12	0.19	75	0	0				18	4	0.22			
MDC1	9656	broad.mit.edu	37	6	30673315	30673315	+	Silent	SNP	G	G	T	rs149345627	bycluster;byfrequency;alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	MDC1	NM_014641	exon10	c.C3645A	p.T1215T	TCGGTCGGTGGAG		147	4	0.03	158	1	0.0063291139		218		79	0	0.00			
MUC21	394263	broad.mit.edu	37	6	30954534	30954534	+	Silent	SNP	T	T	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	MUC21,NS,carcinoma,0,3	MUC21	NM_001010909	exon2	c.T582A	p.T194T	CAGCACTGCCACC		48	5	0.10	39	1	0.0256410256		98	3	0	0				
BRD2	6046	mdanderson.org	37	6	32942516	32942516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001113182	exon3	c.G307T	p.V103L	CAGCCTGTGGATG		35	3	0.09	38	0	0				206	0	0.00			
MCM3	4172	mdanderson.org	37	6	52141940	52141940	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_002388	exon8	c.C1225A	p.R409R	TAGCTCGGGGTGC		53	3	0.06	52	0	0				305	0	0.00			
ULBP2	80328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	150267564	150267564	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_025217	exon3	c.A406T	p.S136C	CACAGCAGTGGAT		84	11	0.13	170	0	0				0	0				
.	2667	bcgsc.ca	37	7	48942827	48942827	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	.	.	.	.	ATGGACTTTTGAC		119	8	0.07	79	0	0				0	0				
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	.	.	.	.	CCGGGGTCCTTGA		141	5	0.04	110	0	0				0	0				
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86577164	86577164	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001142749	exon3	c.T385G	p.S129A	CCAAGGAATAGGT		151	41	0.27	140	0	0				28	14	0.50			
MUC17	140453	ucsc.edu	37	7	100680100	100680100	+	Silent	SNP	G	G	A	rs142682652	byfrequency	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	MUC17	NM_001040105	exon3	c.G5403A	p.S1801S	AACCTCGACTCTT		162	22	0.14	115	4	0.0347826087		804		0	0				
MUC17	140453	ucsc.edu;bcgsc.ca	37	7	100680117	100680117	+	Missense_Mutation	SNP	T	T	C	rs147353603	bycluster;byfrequency	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	MUC17	NM_001040105	exon3	c.T5420C	p.M1807T	AAGGAATGACTCC		169	31	0.18	112	3	0.0267857143		804		0	0				
MUC17	140453	mdanderson.org	37	7	100681345	100681345	+	Missense_Mutation	SNP	T	T	G	rs142097516	bycluster	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001040105	exon3	c.T6648G	p.S2216R	TCCTAGTGAAGGA		154	8	0.05	79	0	0				0	0				
COL26A1	136227	broad.mit.edu	37	7	101194114	101194115	+	RNA	INS	-	-	C	rs34442683	bycluster;by1000genomes	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	.	.	.	.	ACCTGCTCCCCTT		21	16	0.76	6	0	0				0	0				
CUX1	1523	mdanderson.org	37	7	101891810	101891810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001202543	exon24	c.G4039T	p.D1347Y	GAGGGCGACAGCT		33	3	0.09	19	0	0				2	0	0.00			
PPP2R2A	5520	mdanderson.org	37	8	26217714	26217714	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001177591	exon5	c.G406T	p.E136X	ATCAGTGAAAGGG		45	3	0.07	50	0	0				120	0	0.00			
ARFGEF1	10565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68208839	68208839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	ARFGEF1,NS,carcinoma,+1,1	ARFGEF1	NM_006421	exon5	c.C466T	p.L156F	CAGTAAGTAAAGC		97	20	0.21	97	0	0		1	1	10	3	0.30			
ERCC6L	54821	broad.mit.edu	37	X	71425589	71425589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	ERCC6L	NM_017669	exon2	c.C3028A	p.P1010T	CTTCTGGTTCATC		107	5	0.05	63	0	0		98		50	0	0.00			
CTAG2	30848	broad.mit.edu	37	X	153881676	153881676	+	Silent	SNP	A	A	C	rs370709312		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	CTAG2	NM_020994	exon1	c.T114G	p.G38G	CGTGGCACCCGCC		92	35	0.38	40	19	0.475		88		0	0				
