Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
KIF17	57576	broad.mit.edu	37	1	21011461	21011461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	KIF17	NM_020816	exon10	c.C2072A	p.P691H	ACGCCAGGCTCTG		201	5	0.02	222	0	0		130		6	0	0.00			
PEF1	553115	hgsc.bcm.edu	37	1	32096374	32096374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	PEF1,NS,carcinoma,+1,1	PEF1	NM_012392	exon5	c.G695A	p.R232H	GCAGAGCGTGGGC		42	2	0.05	69	1	0.0144927536		1	1	195	0	0.00			
ZNF362	149076	mdanderson.org	37	1	33742069	33742069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_152493	exon4	c.C223A	p.P75T	CCGGCACCCGCCG		24	3	0.13	28	0	0				11	0	0.00			
RSBN1	54665	broad.mit.edu	37	1	114354926	114354926	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	RSBN1	NM_018364	exon1	c.109delG	p.A37fs	CGACCGCCCCCCC		11	3	0.27	19	0	0		71		1	0	0.00			
FCRL2	79368	mdanderson.org	37	1	157745582	157745582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_030764	exon2	c.C35T	p.A12V	GTGACTGCATCTG		43	3	0.07	35	0	0				0	0				
SHOC2	8036	mdanderson.org	37	10	112724386	112724386	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001269039	exon1	c.G270T	p.V90V	AGAGGTGATTAAA		118	5	0.04	159	0	0				30	0	0.00			
MUC2	4583	mdanderson.org	37	11	1093324	1093324	+	Missense_Mutation	SNP	G	G	A	rs201143282		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5143A	p.G1715S	CCCACCGGCACAC		32	3	0.09	36	1	0.0277777778		0	2	2	0	0.00			
MUC2	4583	mdanderson.org	37	11	1093346	1093346	+	Missense_Mutation	SNP	C	C	T	rs371050870		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_002457	exon30	c.C5165T	p.T1722I	CCCCGACACCCAT		36	5	0.14	48	1	0.0208333333				6	2	0.33			
AHNAK	79026	hgsc.bcm.edu	37	11	62294188	62294188	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	AHNAK,mucosal,malignant_melanoma,0,2	AHNAK	NM_001620	exon5	c.A7701C	p.L2567F	CATCTTTAACTTA		154	8	0.05	214	0	0		0	2	94	0	0.00			
FAM86C2P	645332	bcgsc.ca	37	11	67560715	67560715	+	RNA	SNP	C	C	T	rs184691350	bycluster	TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	.	.	.	.	GGGAAACAGTTTC		269	22	0.08	279	11	0.0394265233				9	0	0.00			
HTR3B	9177	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113775694	113775694	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	HTR3B	NM_006028	exon1	c.C39A	p.I13I	CTGCATCCTGGTG		77	33	0.43	122	1	0.0081967213		50		0	0				
OR10G9	219870	mdanderson.org	37	11	123894601	123894601	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001001953	exon1	c.G882T	p.V294V	GGAGGTGAAGAAA		30	3	0.10	98	0	0				0	0				
WBP11	51729	broad.mit.edu	37	12	14947586	14947586	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	WBP11,right_lower_lobe,carcinoma,0,2	WBP11	NM_016312	exon7	c.T606C	p.P202P	AGGGGGAGGGCCA		588	9	0.02	220	2	0.0090909091		66	2	566	1	0.00			
SPRYD3	84926	broad.mit.edu	37	12	53471008	53471009	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	GC	GC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	SPRYD3	NM_032840	exon2	c.G60C	p.H58Y	GGTAGTGCAGGTT		110	4	0.04	106	0	0		29		64	0	0.00			
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81760903	81760903	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	PPFIA2,NS,carcinoma,-1,1	PPFIA2	NM_001220476	exon13	c.A1529T	p.E510V	AAAGATTCTTCAA		501	107	0.21	495	0	0		-1	1	0	0				
.	0	broad.mit.edu	37	12	110868215	110868216	+	RNA	DEL	GT	GT	-	rs113592903	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	GT	GT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	.	.	.	.	GTGTGCGTGTGTG		12	5	0.42	8	0	0				0	0				
CIT	11113	mdanderson.org	37	12	120128070	120128070	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	CIT_ENST00000392521,axilla,malignant_melanoma,-2,6	CIT_ENST00000392521	NM_001206999	exon47	c.C6072G	p.P2024P	CCGGCCGGGGGAC		17	2	0.12	12	0	0		-2	6	40	0	0.00			
TCTN2	79867	mdanderson.org	37	12	124156143	124156143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001143850	exon2	c.G172T	p.V58L	CTGGCAGTGCTGC		68	4	0.06	46	0	0				47	0	0.00			
RB1	5925	broad.mit.edu	37	13	48947559	48947559	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	RB1	NM_000321	exon12	c.C1146A	p.I382I	CACTATCCAACAA		334	6	0.02	450	1	0.0022222222		1068		29	1	0.03			
CLDN10	9071	broad.mit.edu	37	13	96085990	96085990	+	Translation_Start_Site	SNP	G	G	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	CLDN10	.	.	.	.	ACATCCGCTGGCT		40	3	0.08	51	1	0.0196078431		70		0	0				
TM9SF2	9375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100192991	100192991	+	Silent	SNP	G	G	T	rs149415928	alternate_allele	TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_004800	exon8	c.G852T	p.A284A	ATGGGCGTCTAGA		160	74	0.46	211	0	0				226	105	0.46			
ING1	3621	mdanderson.org	37	13	111366533	111366533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_198219	exon1	c.G37T	p.V13L	CACCTGGTGAACT		34	3	0.09	55	0	0				21	0	0.00			
ADAM21	8747	bcgsc.ca	37	14	70924643	70924643	+	Missense_Mutation	SNP	T	T	C	rs78114303	bycluster;by1000genomes	TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	ADAM21	NM_003813	exon2	c.T427C	p.Y143H	CTCACTTATGAAA		174	13	0.07	144	3	0.0208333333		181		0	0				
HEATR4	399671	broad.mit.edu	37	14	73989219	73989219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	HEATR4,colon,carcinoma,0,1	HEATR4	NM_203309	exon2	c.G638A	p.R213H	GCTGTGCGCTCGT		156	5	0.03	114	0	0		126	1	1	0	0.00			
MIR299	407023	mdanderson.org	37	14	101490191	101490191	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	.	.	.	.	CCGCTTCTTGGTA		325	9	0.03	269	0	0				0	0				
PLA2G4F	255189	broad.mit.edu	37	15	42436300	42436300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	PLA2G4F,NS,carcinoma,-1,2	PLA2G4F	NM_213600	exon18	c.G2018A	p.R673Q	CAGTCCCGCATGG		74	3	0.04	77	0	0		75	2	1	0	0.00			
ZNF609	23060	mdanderson.org	37	15	64970351	64970351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_015042	exon5	c.G3439T	p.A1147S	TATCCTGCCAAGT		46	3	0.07	65	0	0				28	0	0.00			
AXIN1	8312	mdanderson.org	37	16	347728	347728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_003502	exon6	c.C1778A	p.A593D	CTGTGGGCGAGGC		33	3	0.09	29	0	0				62	0	0.00			
CRAMP1L	57585	mdanderson.org	37	16	1717336	1717336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_020825	exon16	c.G3037T	p.G1013C	CTGCAGGGCTCCG		46	3	0.07	62	1	0.0161290323				12	0	0.00			
IGFALS	3483	broad.mit.edu;mdanderson.org	37	16	1841105	1841105	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	IGFALS	NM_001146006	exon2	c.G1428A	p.E476E	GTCGAGCTCCAGC		13	3	0.23	27	0	0		29		10	1	0.10			
THAP11	57215	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	67876460	67876460	+	Translation_Start_Site	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	THAP11	NM_020457	exon1	c.G3T	p.M1I	AGCCATGCCTGGC		24	10	0.42	49	0	0		27		22	12	0.55			
NFATC3	4775	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	68119617	68119617	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_173163	exon1	c.G33A	p.E11E	CGACGAGCTCGAC		22	8	0.36	40	0	0				3	1	0.33			
AP1G1	164	broad.mit.edu;mdanderson.org	37	16	71805154	71805154	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	AP1G1	NM_001030007	exon5	c.C470A	p.A157E	AGTGCTGCCTATG		68	5	0.07	96	0	0		83		22	0	0.00			
LOC100506713	0	mdanderson.org	37	17	6905930	6905930	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	.	.	.	.	CAGCAAGTCCCGG		19	2	0.11	22	0	0				12	0	0.00			
TMEM102	284114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7339839	7339839	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_178518	exon3	c.G541C	p.E181Q	AGCGAAGAAAGTT		119	49	0.41	145	0	0				29	13	0.45			
MRPL45P2	0	broad.mit.edu	37	17	45567245	45567246	+	RNA	INS	-	-	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	.	.	.	.	CCATCTCAAAAAA		6	3	0.50	8	0	0				0	0				
R3HDM4	91300	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	900917	900917	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_138774	exon4	c.G387A	p.E129E	CTCCTGCTCCTCC		110	6	0.05	156	0	0				151	16	0.11			
CHAF1A	10036	mdanderson.org	37	19	4428887	4428887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_005483	exon8	c.G1604T	p.S535I	TTAACAGGTCAGA		57	3	0.05	69	0	0				67	0	0.00			
RHPN2	85415	hgsc.bcm.edu	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	RHPN2,face,carcinoma,0,2	RHPN2	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC		22	3	0.14	21	1	0.0476190476		0	2	61	0	0.00			
LRP3	4037	mdanderson.org	37	19	33696583	33696583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_002333	exon5	c.G907T	p.G303C	CGGCTGGGCTATG		20	2	0.10	33	0	0				58	0	0.00			
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51628989	51628989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001198558	exon2	c.C557T	p.S186F	CCGTGTCCCCCCT		50	18	0.36	65	0	0				2	0	0.00			
MFSD2B	388931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	24246462	24246462	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001080473	exon12	c.G1179A	p.L393L	CATGCTGCCAGAC		212	18	0.08	105	0	0				0	0				
EGR4	1961	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	73519001	73519001	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001965	exon2	c.A1354T	p.T452S	AAGGGGTGGGCGG		14	8	0.57	23	0	0				0	0				
FAHD2CP	0	broad.mit.edu	37	2	96687429	96687429	+	RNA	DEL	C	C	-	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	.	.	.	.	GCCCTGCACATAG		19	10	0.53	37	2	0.0540540541				1	0	0.00			
TMEM131	23505	mdanderson.org	37	2	98418952	98418952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_015348	exon24	c.C2590A	p.Q864K	TAAACTGAACATA		119	5	0.04	177	0	0				41	0	0.00			
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	159992709	159992709	+	Silent	SNP	C	C	G	rs375201296	alternate_allele	TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	TANC1,NS,carcinoma,0,2	TANC1	NM_033394	exon5	c.C264G	p.P88P	AGGTCCCGTCAGG		44	9	0.20	62	0	0		0	2	12	6	0.50			
IFIH1	64135	broad.mit.edu;mdanderson.org	37	2	163174366	163174366	+	Splice_Site	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	IFIH1	NM_022168	exon1	c.G452A	p.R151Q	CCTACCCGGTTTC		58	3	0.05	82	0	0		102		43	4	0.09			
RAPH1	65059	broad.mit.edu	37	2	204312708	204312708	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	RAPH1	NM_203365	exon14	c.C1763A	p.S588X	GATCCCGATTTAA		127	3	0.02	132	0	0		118		15	0	0.00			
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	230650472	230650472	+	Splice_Site	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_004238	exon34	c.4869+1G>A	.	AGCTCACCTCATT		78	43	0.55	79	0	0				15	15	1.00			
FRG1B	284802	bcgsc.ca;mdanderson.org	37	20	29633902	29633902	+	Missense_Mutation	SNP	C	C	A	rs145072022		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	FRG1B	.	.	.	.	AGAGAACCAAATT		256	12	0.05	265	3	0.0113207547		181		28	0	0.00			
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34300982	34300982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_184234	exon12	c.C1133T	p.A378V	TGTAGAGCTTGCT		90	38	0.42	88	0	0				429	139	0.32			
TCFL5	10732	bcgsc.ca	37	20	61488884	61488884	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	TCFL5	NM_006602	exon4	c.A1101G	p.E367E	GGCACCTTCGCCC		169	6	0.04	174	0	0		43		72	0	0.00			
ZGPAT	84619	mdanderson.org	37	20	62364705	62364705	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	ZGPAT,NS,carcinoma,+1,1	ZGPAT	NM_001083113	exon3	c.718+1G>T	.	TCACCGGTGAGGC		48	3	0.06	34	0	0		1	1	3	0	0.00			
ANKRD30BP2	149992	hgsc.bcm.edu	37	21	14417695	14417695	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	.	.	.	.	TTAGATTATACAG		131	25	0.19	101	0	0				0	0				
SAMSN1-AS1	0	broad.mit.edu	37	21	15955849	15955850	+	RNA	INS	-	-	A	rs202144398	by1000genomes	TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	.	.	.	.	TGGCAATAAAAAA		55	7	0.13	31	0	0				0	0				
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	19666630	19666630	+	Missense_Mutation	SNP	C	C	T	rs202100185	bycluster;by1000genomes	TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_002772	exon21	c.G2443A	p.V815I	TGCTGACGAGAGA		203	11	0.05	155	0	0	0.001			0	0				
B3GALT5	10317	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	41032933	41032933	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	B3GALT5	NM_033170	exon3	c.G447A	p.A149A	TCAGGCGGCGTTT		205	8	0.04	158	0	0		40		7	2	0.29	rescued with RNA-seq		
MN1	4330	hgsc.bcm.edu	37	22	28193690	28193690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_002430	exon1	c.A2842G	p.R948G	TGTCCCTTTTTCT		73	4	0.05	101	0	0				16	0	0.00			
TTC28	23331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	28559107	28559108	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	CA	CA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001145418	exon6	c.T1413C	p.A472T	CCTCTGCAGCCCG		58	28	0.48	81	0	0				3	0	0.00			
CELSR1	9620	mdanderson.org	37	22	46832126	46832126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_014246	exon4	c.C4467A	p.H1489Q	GAAGTCGTGCTTC		51	3	0.06	65	0	0				28	0	0.00			
EFHB	151651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	19975292	19975292	+	Silent	SNP	T	T	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_144715	exon1	c.A219T	p.G73G	TTCTAATCCCATT		373	29	0.08	314	0	0				4	0	0.00			
WNT5A	7474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	55504144	55504144	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	WNT5A,NS,carcinoma,0,1	WNT5A	NM_003392	exon5	c.C1119T	p.I373I	GTCCACGATCTCC		150	19	0.13	135	0	0		0	1	22	4	0.18			
FLNB	2317	broad.mit.edu	37	3	58098020	58098020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	FLNB	NM_001457	exon18	c.C2720T	p.T907M	CTCACACGGTTAA		168	4	0.02	144	0	0		430		84	3	0.04			
EPHA3	2042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	89480495	89480495	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_005233	exon13	c.G2332C	p.A778P	GAAGCTGCTTATA		116	54	0.47	163	0	0				51	27	0.53			
ABTB1	80325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	127395400	127395400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_172027	exon6	c.G502A	p.A168T	TTTGGGGCCCTGC		144	9	0.06	118	0	0				40	2	0.05			
SLC30A9	10463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	41992712	41992712	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_006345	exon1	c.G44C	p.W15S	GTAGCTGGTCCTC		67	33	0.49	80	0	0				40	25	0.63			
LIN54	132660	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	83867529	83867529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	LIN54	NM_194282	exon5	c.G1050T	p.Q350H	TTGAATCTGCTGG		170	8	0.05	197	0	0		50		15	0	0.00			
TENM3	55714	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	183600887	183600887	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001080477	exon7	c.G1395A	p.T465T	TGAGACGGAGAGA		113	12	0.11	151	1	0.0066225166				12	0	0.00			
ADAMTS2	9509	mdanderson.org	37	5	178564853	178564853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_014244	exon12	c.G1868A	p.R623H	TCCTCGCGGAAGT		40	3	0.08	40	0	0				17	0	0.00			
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12125357	12125357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_002114	exon4	c.G5329A	p.V1777M	ACAGACGTGAGAC		155	16	0.10	160	0	0				17	2	0.12			
LY6G5B	58496	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	31639021	31639021	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_021221	exon2	c.C147G	p.I49M	TACCATCAGCAGC		182	9	0.05	215	0	0				11	1	0.09			
FRS3	10817	mdanderson.org	37	6	41739127	41739127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_006653	exon7	c.C709A	p.P237T	GGCCTGGCTGCAA		47	3	0.06	54	0	0				9	0	0.00			
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46659709	46659709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001168359	exon1	c.G3844A	p.G1282R	AAAATAGGAGATT		172	32	0.19	227	0	0				0	0				
AP5Z1	9907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4830438	4830438	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_014855	exon16	c.C2073T	p.P691P	CCTGCCCAGGTGT		56	12	0.21	36	0	0				117	25	0.21			
NUDCD3	23386	mdanderson.org	37	7	44530025	44530025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_015332	exon1	c.C175A	p.Q59K	AGGCCTGCGCGGC		28	3	0.11	19	0	0				149	0	0.00			
.	0	broad.mit.edu	37	7	76684443	76684447	+	RNA	DEL	AGAGT	AGAGT	-	rs71273979	alternate_allele	TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	AGAGT	AGAGT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	.	.	.	.	GTACACAGAGTAA		74	12	0.16	37	3	0.0810810811				0	0				
VGF	7425	mdanderson.org	37	7	100807777	100807777	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_003378	exon2	c.C348A	p.T116T	GGTCTCGGTCAGC		25	3	0.12	15	0	0				10	0	0.00			
CALU	813	bcgsc.ca;mdanderson.org	37	7	128409204	128409204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	CALU	NM_001199671	exon8	c.C955T	p.R319W	TTAGTACGGCATG		107	5	0.05	85	0	0		42		509	0	0.00			
PRSS3P2	154754	hgsc.bcm.edu	37	7	142478944	142478944	+	RNA	SNP	G	G	A	rs377675720		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	.	.	.	.	CCTGCCGTTCTTG		49	5	0.10	18	0	0				0	0				
GSDMD	79792	mdanderson.org	37	8	144644256	144644256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001166237	exon11	c.G951T	p.E317D	CCTGGAGGGGGTG		29	3	0.10	13	1	0.0769230769				33	0	0.00			
OPLAH	26873	mdanderson.org	37	8	145113441	145113441	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_017570	exon6	c.C741A	p.R247R	CACGTAGCGCTGG		18	3	0.17	22	0	0				12	0	0.00			
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	145806589	145806590	+	Frame_Shift_Ins	INS	-	-	CACTCACC	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	ARHGAP39	NM_025251	exon4	c.153_154insGGTGAGTG	p.C51fs	CCACACGCACTCA		210	18	0.09	160	0	0		80		18	0	0.00			
ZMYM3	9203	broad.mit.edu	37	X	70472909	70472909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	ZMYM3	NM_005096	exon2	c.T197C	p.L66P	TTTTCCAGGCCAG		410	9	0.02	208	0	0		137		66	0	0.00			
