Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
ALDH4A1	8659	hgsc.bcm.edu;mdanderson.org	37	1	19209815	19209815	+	Missense_Mutation	SNP	G	G	T	rs199723895	by1000genomes;alternate_allele	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_003748	exon6	c.C561A	p.S187R	GGGCACGCTGATG		54	4	0.07	68	0	0				31	0	0.00			
CSMD2	114784	mdanderson.org	37	1	34164479	34164479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_052896	exon24	c.G3679T	p.G1227C	AATGACCTTCATC		50	3	0.06	45	0	0				0	0				
SZT2	23334	mdanderson.org	37	1	43908278	43908278	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	SZT2_ENST00000562955,NS,carcinoma,0,6	SZT2_ENST00000562955	NM_015284	exon57	c.C7969T	p.R2657X	CCCGTGCGAGATG		31	3	0.10	36	0	0		0	6	42	0	0.00			
SEC22B	9554	broad.mit.edu	37	1	145116193	145116193	+	RNA	DEL	G	G	-	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	.	.	.	.	CTGGCTGGGGCAT		8	3	0.38	4	0	0				167	0	0.00			
OBSCN	84033	hgsc.bcm.edu	37	1	228465295	228465295	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001271223	exon29	c.G7969T	p.E2657X	CACGACGAAGTGC		76	23	0.30	72	0	0				8	0	0.00			
CCDC6	8030	broad.mit.edu	37	10	61666054	61666054	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	CCDC6	NM_005436	exon1	c.T129G	p.G43G	CTTCCCACCGCCG		33	10	0.30	23	7	0.3043478261		44		7	0	0.00			
PIPSL	0	broad.mit.edu	37	10	95718367	95718369	+	RNA	DEL	TTC	TTC	-	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	TTC	TTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	.	.	.	.	TTTTCTTTCTTTC		14	6	0.43	10	0	0				0	0				
WNT8B	7479	mdanderson.org	37	10	102242036	102242036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_003393	exon6	c.G519T	p.K173N	GGTGAAGGGCACC		9	2	0.22	9	0	0				0	0				
SORCS1	114815	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	108338921	108338921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	SORCS1	NM_001206572	exon26	c.C3460A	p.P1154T	CATTGGGCCTGCT		110	7	0.06	95	1	0.0105263158		534		4	0	0.00			
EMX2	2018	broad.mit.edu	37	10	119303017	119303017	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	EMX2,NS,carcinoma,0,1	EMX2	NM_001165924	exon1	c.A239C	p.N80T	CGCCCAACCCCGC		68	24	0.35	58	9	0.1551724138		25	1	11	1	0.09			
CTBP2	1488	bcgsc.ca	37	10	126678129	126678129	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	CTBP2	NM_022802	exon9	c.C2916A	p.P972P	TTTTGTGGGCTGG		62	4	0.06	56	0	0		100		262	0	0.00			
ODF3	113746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	199447	199447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	ODF3,face,carcinoma,0,1	ODF3	NM_053280	exon6	c.C613A	p.R205S	GCTGCCCGTGTGG		88	37	0.42	89	0	0		0	1	0	0				
MUC6	4588	bcgsc.ca	37	11	1016871	1016871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	MUC6	NM_005961	exon31	c.C5930A	p.P1977H	GAGAAGGGACTGC		277	12	0.04	337	4	0.0118694362		408		1	0	0.00			
MUC2	4583	mdanderson.org	37	11	1092966	1092966	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_002457	exon30	c.C4785A	p.T1595T	CCCAACCCCAACA		31	2	0.06	30	1	0.0333333333				17	1	0.06			
FOLH1	2346	bcgsc.ca	37	11	49204790	49204790	+	Silent	SNP	A	A	G	rs76509850	bycluster;byfrequency	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		113	6	0.05	136	2	0.0147058824		141		9	0	0.00			
.	0	bcgsc.ca	37	11	62815368	62815368	+	RNA	SNP	G	G	A	rs7125680	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	.	.	.	.	GGTGCAGCATGCC		30	8	0.27	24	0	0				0	0				
ATG2A	23130	mdanderson.org	37	11	64662838	64662838	+	Missense_Mutation	SNP	G	G	T	rs370496305	alternate_allele	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_015104	exon40	c.C5504A	p.A1835E	CTCCGCGCAGAGC		34	3	0.09	53	0	0				39	0	0.00			
ATG2A	23130	mdanderson.org	37	11	64677638	64677638	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_015104	exon13	c.T1737C	p.H579H	GTGGCAATGGCAG		42	3	0.07	52	0	0				34	0	0.00			
PCNXL3	399909	mdanderson.org	37	11	65394937	65394937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_032223	exon22	c.C3586T	p.P1196S	TGCTGCCCCCCAC		50	3	0.06	69	0	0				39	0	0.00			
YIF1A	10897	mdanderson.org	37	11	66052939	66052939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	YIF1A,face,carcinoma,0,1	YIF1A	NM_020470	exon6	c.C554A	p.A185D	AGCAGGGCCAGCA		54	5	0.09	44	0	0		0	1	132	0	0.00			
PRB2	653247	broad.mit.edu	37	12	11546214	11546214	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	PRB2	NM_006248	exon3	c.A798C	p.P266P	TGGGGGTGGTCCT		596	41	0.07	240	16	0.0666666667		168		0	0				
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	T	C	rs121913240	bycluster	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182G	p.Q61R	TCCTCTTGACCTG		193	14	0.07	87	0	0		1	429	125	3	0.02			
RAPGEF3	10411	mdanderson.org	37	12	48141588	48141588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001098531	exon14	c.C1380A	p.N460K	CCTCTTGTTGCAG		25	2	0.08	33	0	0				13	0	0.00			
FAM186A	121006	broad.mit.edu	37	12	50746811	50746811	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	FAM186A	NM_001145475	exon4	c.T3804C	p.T1268T	CTGAGGAGTAAGA		109	6	0.06	85	1	0.0117647059		181		0	0				
EIF4B	1975	mdanderson.org	37	12	53416289	53416289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	EIF4B,NS,carcinoma,0,1	EIF4B	NM_001417	exon6	c.G545A	p.R182H	ATGATCGTTCTTT		79	4	0.05	77	0	0		0	1	576	0	0.00			
MMP19	4327	mdanderson.org	37	12	56232401	56232401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_002429	exon6	c.C884A	p.A295D	ATCATGGCATCCA		45	3	0.07	46	0	0				19	0	0.00			
AVIL	10677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58204191	58204191	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_006576	exon6	c.G702C	p.K234N	TGTAGGCTTGATA		154	51	0.33	138	0	0				2	1	0.50			
DPY19L2	283417	bcgsc.ca	37	12	63964599	63964600	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	DPY19L2	NM_173812	exon20	c.C1938T	p.I647V	GCTTGATGCTTGC		207	14	0.07	199	2	0.0100502513		97		22	0	0.00			
VPS33A	65082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122734429	122734429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_022916	exon6	c.G764A	p.G255D	TGAATGCCATAAA		80	28	0.35	75	0	0				49	4	0.08			
RILPL1	353116	mdanderson.org	37	12	123968738	123968738	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_178314	exon6	c.C1056A	p.G352G	CTTGATGCCCGAC		22	2	0.09	14	0	0				42	0	0.00			
SCARB1	949	mdanderson.org	37	12	125263108	125263108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001082959	exon12	c.C1426A	p.P476T	GGCCTGGCTGGCT		46	3	0.07	38	0	0				53	0	0.00			
ADPRHL1	113622	mdanderson.org	37	13	114088091	114088091	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	ADPRHL1,caecum,carcinoma,-2,1	ADPRHL1	NM_138430	exon3	c.G471T	p.V157V	GCACTCCACGCTG		40	3	0.08	58	0	0		-2	1	3	0	0.00			
ADAM21P1	0	broad.mit.edu	37	14	70713782	70713782	+	RNA	SNP	A	A	G	rs200469187		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	.	.	.	.	CCAGCAAATTTTG		112	10	0.09	91	2	0.021978022				0	0				
BCL11B	64919	mdanderson.org	37	14	99641120	99641120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	BCL11B,NS,carcinoma,0,1	BCL11B	NM_138576	exon4	c.G2053A	p.A685T	GCTTGGCGGCGCT		30	3	0.10	13	0	0		0	1	1	0	0.00			
PACS2	23241	mdanderson.org	37	14	105858990	105858990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001100913	exon23	c.G2290T	p.V764L	CTGCAGGTGGACT		53	3	0.06	31	0	0				71	0	0.00			
RAD51	5888	mdanderson.org	37	15	41021794	41021794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001164269	exon8	c.G739T	p.A247S	CACTTGGCCAGGT		67	4	0.06	71	0	0				186	0	0.00			
RPAP1	26015	mdanderson.org	37	15	41817286	41817286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	RPAP1,NS,carcinoma,+2,1	RPAP1	NM_015540	exon15	c.C1978A	p.L660M	AGGCCAGTTCTTG		50	3	0.06	56	1	0.0178571429		2	1	47	0	0.00			
CSPG4	1464	mdanderson.org	37	15	75979730	75979730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001897	exon3	c.C3676A	p.L1226I	CTTGTAGGGTGGC		52	3	0.06	59	0	0				44	0	0.00			
ACSM2B	348158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20556521	20556521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_182617	exon11	c.G1239T	p.R413S	TTTGACCCTGATG		63	20	0.32	94	0	0				0	0				
LOC100132247	0	bcgsc.ca	37	16	22545897	22545897	+	Missense_Mutation	SNP	G	G	T	rs143579045	bycluster	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	RP11-368J21.2_ENST00000424340,NS,carcinoma,0,4	.	NM_001135865	exon7	c.G1593T	p.K531N	TATCAAGACACCT		42	6	0.14	35	2	0.0571428571			4	187	17	0.09			
MYBBP1A	10514	mdanderson.org	37	17	4445103	4445103	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	MYBBP1A,bladder,carcinoma,-2,1	MYBBP1A	NM_014520	exon23	c.C3171A	p.G1057G	GACCTGGCCCATC		52	3	0.06	53	0	0		-2	1	109	0	0.00			
PELP1	27043	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4574813	4574813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	PELP1	NM_014389	exon17	c.C3314A	p.T1105K	GCAGCTGTGTCAT		44	4	0.09	46	0	0		102		176	0	0.00			
DNAH9	1770	mdanderson.org	37	17	11833287	11833287	+	Silent	SNP	A	A	T	rs2286303	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001372	exon63	c.A11982T	p.P3994P	AGAGCCAGCACCC		104	4	0.04	120	0	0				3	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		153	11	0.07	200	10	0.05				24	18	0.75			
KIAA0100	9703	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26964994	26964994	+	Missense_Mutation	SNP	C	C	T	rs200349785		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	KIAA0100	NM_014680	exon14	c.G1631A	p.R544H	AAGATACGAGACA		41	4	0.10	50	0	0		175		83	0	0.00			
ANKFN1	162282	mdanderson.org	37	17	54450048	54450048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_153228	exon6	c.G652T	p.V218F	ACACTGGTCCAGG		41	3	0.07	38	0	0				0	0				
ERN1	2081	mdanderson.org	37	17	62133223	62133223	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001433	exon13	c.A1484T	p.Q495L	GGCAGCTGCTGCT		44	4	0.09	35	1	0.0285714286				11	0	0.00			
CEP76	79959	mdanderson.org	37	18	12702538	12702538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001271989	exon1	c.C10A	p.P4T	CCGGAGGCAGCGA		41	3	0.07	43	0	0				17	0	0.00			
LOC644669	0	broad.mit.edu	37	18	15326266	15326284	+	RNA	DEL	ACCTTCTAGCTATCACTTA	ACCTTCTAGCTATCACTTA	-	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	ACCTTCTAGCTATCACTTA	ACCTTCTAGCTATCACTTA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	.	.	.	.	TCTTTCACCTTCT		6	2	0.33	5	0	0				0	0				
ILF3	3609	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10798137	10798137	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_017620	exon18	c.G2187A	p.P729P	CTCACCGGTGCCC		114	14	0.12	117	0	0				315	67	0.21			
RGL3	57139	mdanderson.org	37	19	11512712	11512712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001035223	exon13	c.C1459A	p.Q487K	GGTTCTGGGCATG		45	3	0.07	52	0	0				8	0	0.00			
FAM98C	147965	mdanderson.org	37	19	38893809	38893809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_174905	exon1	c.G16T	p.A6S	GTGAAGGCGGAAG		12	3	0.25	9	0	0				7	0	0.00			
IL4I1	259307	mdanderson.org	37	19	50393222	50393222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_172374	exon10	c.C1475T	p.T492M	GGGACCGTCCAGT		51	3	0.06	50	0	0				76	0	0.00			
.	0	bcgsc.ca	37	2	6636082	6636082	+	RNA	SNP	G	G	T	rs306191	bycluster	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	.	.	.	.	GGCTTCGTTAAAC		42	4	0.10	36	0	0				0	0				
ATL2	64225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	38527452	38527452	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001135673	exon10	c.C1090T	p.Q364X	CTCCTTGATAGAT		24	6	0.25	25	0	0				46	6	0.13			
ANKRD20A8P	0	broad.mit.edu	37	2	95514650	95514651	+	RNA	INS	-	-	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	.	.	.	.	CCATCTCAAAAAA		8	5	0.63	6	0	0				0	0				
TMEM182	130827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103380804	103380804	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_144632	exon3	c.C249G	p.S83S	ACCGTCCAAGAAC		88	30	0.34	100	0	0				20	6	0.30			
KCNE4	23704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223918008	223918008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_080671	exon2	c.C613T	p.P205S	GAGACGCCCCTCA		129	34	0.26	92	0	0				39	10	0.26			
TIGD1	200765	broad.mit.edu	37	2	233414313	233414313	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	TIGD1,NS,carcinoma,0,1	TIGD1	NM_145702	exon1	c.A280C	p.T94P	GGCTGGTCTGATC		25	10	0.40	22	4	0.1818181818		17	1	13	4	0.31			
INSM1	3642	broad.mit.edu	37	20	20350192	20350192	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	INSM1	NM_002196	exon1	c.1281delG	p.E427fs	CGGCGAGGGGGCC		6	2	0.33	6	0	0		17		0	0				
.	0	broad.mit.edu	37	22	18843613	18843613	+	RNA	DEL	G	G	-	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	.	.	.	.	GAGGCAGGGGCGG		16	3	0.19	13	0	0				1	0	0.00			
CARD10	29775	mdanderson.org	37	22	37912202	37912202	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_014550	exon3	c.C477A	p.A159A	GCCCCGGGCCTGC		42	3	0.07	41	0	0				31	0	0.00			
TSEN2	80746	broad.mit.edu	37	3	12544861	12544861	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	TSEN2	NM_001145394	exon5	c.G409T	p.E137X	CCGCTTGAGCATC		106	4	0.04	127	0	0		46		32	0	0.00			
.	152110	broad.mit.edu;ucsc.edu	37	3	27157448	27157448	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	.	.	.	.	AAAATTGTAATAG		344	126	0.37	431	1	0.0023201856				2	1	0.50			
CMTM6	54918	mdanderson.org	37	3	32544117	32544117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_017801	exon1	c.C121A	p.L41I	CCTTGAGAACGCG		23	3	0.13	22	0	0				40	0	0.00			
VPS8	23355	mdanderson.org	37	3	184682325	184682325	+	Missense_Mutation	SNP	G	G	T	rs373762204	alternate_allele	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001009921	exon37	c.G3253T	p.A1085S	CATGGTGCCTTCC		52	3	0.06	48	0	0				18	0	0.00			
DGKQ	1609	mdanderson.org	37	4	960807	960807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001347	exon10	c.C1256A	p.P419Q	CTCTTCGGGGTCA		26	2	0.08	35	0	0				12	0	0.00			
HGFAC	3083	broad.mit.edu	37	4	3443798	3443800	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	CTG	CTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	HGFAC	NM_001528	exon1	c.70_72del	p.24_24del	CTCCTCCTGCTGC		6	2	0.33	8	0	0		69		0	0				
KIAA1109	84162	bcgsc.ca;mdanderson.org	37	4	123120533	123120533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	KIAA1109	NM_015312	exon12	c.G1308T	p.K436N	TATTAAGGGACAA		72	5	0.07	78	0	0		424		5	0	0.00			
ZDHHC11	79844	ucsc.edu	37	5	840644	840644	+	Missense_Mutation	SNP	G	G	C	rs200038670	bycluster	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	ZDHHC11	NM_024786	exon5	c.C750G	p.H250Q	GCCCAGGTGCACC		28	6	0.21	34	1	0.0294117647		97		6	2	0.33			
ZDHHC11	79844	ucsc.edu	37	5	840704	840704	+	Silent	SNP	G	G	A	rs139300052		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	ZDHHC11	NM_024786	exon5	c.C690T	p.T230T	TATCAGGGTCTGC		31	6	0.19	36	1	0.0277777778		97		2	2	1.00			
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15374463	15374463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_004973	exon2	c.G161A	p.G54E	TTGCTGGGAGCCT		102	27	0.26	91	0	0				19	7	0.37			
VARS2	57176	bcgsc.ca	37	6	30890754	30890754	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	VARS2	NM_020442	exon23	c.2185+1G>T	.	TTCAGGGTAAGCC		150	6	0.04	92	1	0.0108695652		60		0	0				
RUNX2	860	mdanderson.org	37	6	45390498	45390498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001024630	exon3	c.C227A	p.A76E	CGGCGGCGGCTGC		16	2	0.13	9	0	0				1	0	0.00			
C6orf165	154313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88119658	88119658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001031743	exon2	c.C101G	p.A34G	TGATTGCTTTTAT		23	10	0.43	53	0	0				12	7	0.58			
SERINC1	57515	mdanderson.org	37	6	122773072	122773072	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_020755	exon6	c.C720A	p.C240X	ACCAACGCAGAGG		50	3	0.06	44	0	0				201	0	0.00			
VNN1	8876	broad.mit.edu;mdanderson.org	37	6	133013412	133013412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	VNN1	NM_004666	exon5	c.C1138A	p.L380I	CCCCTAGAGCGTA		80	5	0.06	121	0	0		69		1	0	0.00			
FLJ35390	0	broad.mit.edu	37	7	44080453	44080453	+	RNA	SNP	G	G	A	rs116887274	byfrequency;by1000genomes	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	.	.	.	.	GCAGCCGGGACAC		33	8	0.24	40	1	0.025				1	0	0.00			
MUC17	140453	hgsc.bcm.edu	37	7	100682117	100682117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	MUC17,right_upper_lobe,carcinoma,-2,1	MUC17	NM_001040105	exon3	c.G7420A	p.G2474S	GAGGCTGGCACCC		104	6	0.06	82	0	0		-2	1	0	0				
EBAG9	9166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110569202	110569202	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_004215	exon5	c.C360A	p.I120I	TGGCATCCCAGAT		158	37	0.23	100	0	0				111	26	0.23			
ZHX1	11244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124267671	124267671	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_007222	exon3	c.T516C	p.S172S	CGAAGAAGAAACT		139	30	0.22	74	0	0				21	4	0.19			
PPP1R16A	84988	mdanderson.org	37	8	145726559	145726559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_032902	exon9	c.G1085T	p.R362L	TGTACCGCAAGCA		35	3	0.09	13	0	0				70	0	0.00			
GPR144	347088	mdanderson.org	37	9	127217258	127217258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001161808	exon7	c.G1301A	p.R434H	TTGTCCGCTTCCT		23	2	0.09	34	0	0				0	0				
ND2	0	hgsc.bcm.edu	37	MT	4492	4492	+	Missense_Mutation	SNP	T	T	C	rs201172504	bycluster;alternate_allele	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	ENST00000361453	exon1	c.T23C	p.V8A	AACCCGTCATCTA		18	9	0.50	15	0	0				0	0				
ARMCX5	64860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101857554	101857554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_022838	exon3	c.C485A	p.S162Y	TGAAATCCAGTGA		153	80	0.52	84	0	0				45	20	0.44			
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70653201	70653201	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	SHANK2_ENST00000338508,colon,carcinoma,-1,1	SHANK2_ENST00000338508	.	.	.	.	GGCACTGTAGAGC		77	7	0.09	88	0	0		-1	1	4	1	0.25			
