Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MAD2L2	10459	mdanderson.org	37	1	11740450	11740450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_006341	exon3	c.G119A	p.G40D	AAGATGCCCACGG		46	3	0.07	69	0	0				78	0	0.00			
CROCCP2	0	broad.mit.edu	37	1	16957490	16957490	+	RNA	DEL	G	G	-	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	GGCCTCGGCCCGG		6	2	0.33	4	0	0				8	0	0.00			
FUCA1	2517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	24194762	24194762	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_000147	exon1	c.G15C	p.G5G	CCTCATCCCCGGA		42	8	0.19	33	0	0				14	2	0.14			
AHDC1	27245	broad.mit.edu;mdanderson.org	37	1	27877165	27877165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	AHDC1	NM_001029882	exon6	c.C1462T	p.R488W	TGTTCCGCCGCCC		54	4	0.07	85	0	0		98		40	0	0.00			
CDC14A	8556	mdanderson.org	37	1	100856378	100856378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_033313	exon4	c.G307T	p.A103S	GCCTATGCAGTAA		50	3	0.06	63	0	0				9	0	0.00			
VAV3	10451	mdanderson.org	37	1	108145093	108145093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_006113	exon24	c.G2146A	p.A716T	GCTTTGCTTCATT		40	3	0.08	47	0	0				32	0	0.00			
ZNF697	90874	broad.mit.edu;mdanderson.org	37	1	120165430	120165430	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	ZNF697_ENST00000421812,right_upper_lobe,carcinoma,-1,2	ZNF697	NM_001080470	exon3	c.C1536A	p.R512R	GATGCGGCGGTGG		49	3	0.06	57	0	0		26	2	17	0	0.00			
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150526211	150526211	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_019032	exon6	c.C744A	p.P248P	TGCCCCCCTACGG		79	35	0.44	74	0	0				120	65	0.54			
RYR2	6262	broad.mit.edu	37	1	237586494	237586494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	RYR2,NS,other,+1,1	RYR2	NM_001035	exon12	c.G951T	p.M317I	ACTCATGGACAAA		340	5	0.01	410	0	0		1273	1	0	0				
TLX1	3195	broad.mit.edu	37	10	102891433	102891433	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	TLX1	NM_005521	exon1	c.C135T	p.Y45Y	AGAATACGGCCTT		93	5	0.05	67	0	0		20		1	0	0.00			
PNLIPRP2	5408	broad.mit.edu	37	10	118386476	118386476	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	PNLIPRP2	.	.	.	.	TGTTGGGGCGGAG		174	4	0.02	137	0	0		103		2	0	0.00			
DBX1	120237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	20180817	20180818	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001029865	exon2	c.C388A	p.Q130R	ACGCTCTGGAGCA		77	10	0.13	94	0	0				0	0				
FNBP4	23360	mdanderson.org	37	11	47755578	47755578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	FNBP4,NS,carcinoma,-1,1	FNBP4	NM_015308	exon10	c.A1685G	p.E562G	CTTACCTCAGTCT		38	10	0.26	45	8	0.1777777778		-1	1	84	0	0.00			
RPLP0P2	113157	hgsc.bcm.edu	37	11	61405030	61405030	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	TGCTGCTGCAGCC		104	5	0.05	113	0	0				6	0	0.00			
MEN1	4221	mdanderson.org	37	11	64577508	64577508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_130803	exon2	c.C74T	p.A25V	AGCTCGGCAGCAA		36	3	0.08	39	0	0				32	0	0.00			
SIPA1	6494	mdanderson.org	37	11	65414526	65414526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_006747	exon8	c.C2021T	p.A674V	TGGTGGCGCGCCT		8	2	0.25	15	0	0				13	0	0.00			
MYEOV	26579	broad.mit.edu	37	11	69063822	69063822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	MYEOV	NM_138768	exon3	c.T905A	p.L302H	ACCACCTCCTCCT		92	6	0.07	103	2	0.0194174757		42		4	0	0.00			
SLC37A4	2542	mdanderson.org	37	11	118897770	118897770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001467	exon6	c.C661A	p.L221M	ACAGCAGCAGCTC		19	2	0.11	16	0	0				130	0	0.00			
ROBO3	64221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124740969	124740969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_022370	exon7	c.G1093A	p.A365T	AGCGTGGCTTTCC		86	35	0.41	85	0	0				0	0				
WNT1	7471	broad.mit.edu	37	12	49375067	49375067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	WNT1	NM_005430	exon4	c.G757T	p.A253S	GACGGCGCCTCGC		110	6	0.05	76	1	0.0131578947		13		0	0				
CIT	11113	mdanderson.org	37	12	120127985	120127985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001206999	exon47	c.G6157A	p.V2053M	TCCTCACGGCTCC		15	2	0.13	16	0	0				8	0	0.00			
ACIN1	22985	broad.mit.edu	37	14	23528416	23528416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	ACIN1_ENST00000338631,NS,carcinoma,+1,2	ACIN1	NM_014977	exon19	c.C3967T	p.R1323C	TGTGGCGCTTGGT		111	4	0.04	159	0	0		147	2	300	27	0.09	rescued with RNA-seq		
IGBP1P1	0	broad.mit.edu	37	14	35409700	35409701	+	RNA	INS	-	-	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	AAAAAAAATTTTT		6	2	0.33	7	0	0				0	0				
TRIM9	114088	mdanderson.org	37	14	51489585	51489585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	TRIM9_ENST00000360392,NS,carcinoma,+2,5	TRIM9_ENST00000360392	NM_052978	exon3	c.C1009A	p.R337S	TGACGCGGGCCAG		48	3	0.06	72	0	0		2	5	0	0				
FOS	2353	mdanderson.org	37	14	75747810	75747810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_005252	exon4	c.G826T	p.A276S	TTCCCAGCATCAT		22	2	0.09	35	0	0				582	0	0.00			
CHEK2P2	0	broad.mit.edu	37	15	20488769	20488770	+	RNA	DNP	CA	CA	TG	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	CA	CA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	GCACTCCAAGATT		331	10	0.03	362	2	0.0055248619				0	0				
DISP2	85455	mdanderson.org	37	15	40660600	40660600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_033510	exon8	c.C2287T	p.P763S	CAGCTGCCGCAGG		39	3	0.08	42	0	0				0	0				
FSD2	123722	hgsc.bcm.edu	37	15	83455275	83455275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001007122	exon3	c.C723A	p.F241L	AGTGATGAAAACC		96	5	0.05	120	0	0				0	0				
KIF7	374654	mdanderson.org	37	15	90188603	90188603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_198525	exon9	c.C2002A	p.L668I	CCTCAAGGCAAAG		55	3	0.05	62	0	0				22	0	0.00			
FAM169B	283777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	98982942	98982942	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_182562	exon7	c.A497T	p.D166V	GGATCATCCTTTG		143	43	0.30	191	0	0				0	0				
RAB11FIP3	9727	mdanderson.org	37	16	560707	560707	+	Missense_Mutation	SNP	G	G	T	rs190687913	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_014700	exon9	c.G1547T	p.C516F	GAGCCTGCGAGAT		43	3	0.07	40	0	0				64	0	0.00			
RHBDL1	9028	mdanderson.org	37	16	727545	727545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_003961	exon5	c.G970T	p.A324S	CACCTGGCCAACG		13	2	0.15	21	0	0				2	0	0.00			
ZNF598	90850	mdanderson.org	37	16	2049697	2049697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_178167	exon11	c.C1853T	p.P618L	GCTTCCGGGGCCT		24	2	0.08	14	0	0				40	1	0.03			
SRCAP	10847	hgsc.bcm.edu;bcgsc.ca	37	16	30735366	30735367	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	SRCAP	NM_006662	exon25	c.4621_4622insT	p.V1541fs	TCAACCGTGGCCC		142	44	0.31	120	0	0		298		102	0	0.00			
C16orf78	123970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49430428	49430428	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_144602	exon4	c.G489C	p.E163D	ACAGGAGGGTACC		191	45	0.24	136	0	0				0	0				
LOC283922	0	broad.mit.edu	37	16	74372644	74372644	+	RNA	SNP	A	A	G	rs2549260	bycluster	TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	CTTGTCAGGGGGA		87	6	0.07	35	0	0				9	0	0.00			
TAF1C	9013	mdanderson.org	37	16	84212612	84212612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_005679	exon14	c.C2545A	p.Q849K	GCTGCTGGGAGCG		20	3	0.15	36	0	0				194	0	0.00			
CDC27	996	mdanderson.org	37	17	45234397	45234397	+	Missense_Mutation	SNP	G	G	A	rs7350908	bycluster;byhapmap	TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001114091	exon7	c.C724T	p.P242S	TATCAGGTGAAAT		65	6	0.09	64	0	0				46	0	0.00			
SAMD14	201191	broad.mit.edu;mdanderson.org	37	17	48190406	48190406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	SAMD14	NM_174920	exon11	c.G1189T	p.G397W	TGAGCCCCAGGCT		41	3	0.07	34	0	0		36		57	0	0.00			
SALL3	27164	mdanderson.org	37	18	76753052	76753052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	SALL3,NS,carcinoma,-1,1	SALL3	NM_171999	exon2	c.C1061T	p.A354V	TGGGTGCGGCGCC		12	2	0.17	16	0	0		-1	1	0	0				
AZU1	566	hgsc.bcm.edu;broad.mit.edu	37	19	831856	831857	+	In_Frame_Ins	INS	-	-	CCGGGA	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	AZU1	NM_001700	exon5	c.735_736insCCGGGA	p.N245delinsNPG	CAACAACCCGGGA		125	38	0.30	156	0	0		31		2	0	0.00			
ASNA1	439	ucsc.edu;bcgsc.ca	37	19	12858375	12858375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	ASNA1	NM_004317	exon6	c.G884A	p.R295H	AGGCCCGTCACAA		80	33	0.41	117	2	0.0170940171		23		237	105	0.44			
CPAMD8	27151	mdanderson.org	37	19	17004138	17004138	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_015692	exon42	c.G5580A	p.G1860G	CCGAGGCCCGGCT		26	3	0.12	24	0	0				1088	0	0.00			
RHPN2	85415	mdanderson.org	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	RHPN2,face,carcinoma,0,2	RHPN2	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC		11	3	0.27	27	0	0		0	2	24	0	0.00			
PAF1	54623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	39880019	39880019	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_019088	exon6	c.C364T	p.Q122X	GCTGCTGGGATCT		80	30	0.38	128	0	0				136	5	0.04			
NKPD1	284353	bcgsc.ca	37	19	45655550	45655550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	NKPD1	NM_198478	exon4	c.C2145A	p.D715E	GTCGCCGTCCAGG		67	4	0.06	79	0	0		46		0	0				
CCDC155	147872	mdanderson.org	37	19	49912498	49912498	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	CCDC155,rectum,carcinoma,0,1	CCDC155	NM_144688	exon14	c.G1104T	p.L368L	CGAGCTGCTACCC		50	3	0.06	65	0	0		0	1	0	0				
ZNF525	170958	broad.mit.edu	37	19	53879109	53879109	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	ZNF525	.	.	.	.	ATACAGGGACGTG		61	6	0.10	54	0	0		35		5	0	0.00			
NBAS	51594	broad.mit.edu	37	2	15378674	15378674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	NBAS	NM_015909	exon45	c.C5861A	p.T1954N	TTCAAAGTATCTG		148	4	0.03	190	0	0		246		120	0	0.00			
AAK1	22848	ucsc.edu;bcgsc.ca	37	2	69746110	69746110	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	AAK1	NM_014911	exon12	c.G1473C	p.Q491H	CTGCTGCTGGTAA		38	4	0.11	61	0	0		121		8	0	0.00			
ANKRD36BP2	0	broad.mit.edu	37	2	89102234	89102234	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	AGGTAGCTGTGAG		25	5	0.20	24	0	0				0	0				
ANKRD36BP2	0	broad.mit.edu	37	2	89104503	89104504	+	RNA	INS	-	-	C	rs149625899	bycluster;by1000genomes	TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	ATTTTTTTCAGAT		8	3	0.38	16	1	0.0625				0	0				
WASH2P	0	broad.mit.edu	37	2	114340538	114340538	+	RNA	SNP	A	A	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	AATATAAAATGCT		370	17	0.05	473	0	0				0	0				
STRADB	55437	hgsc.bcm.edu;bcgsc.ca	37	2	202344880	202344880	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_018571	exon12	c.C1239T	p.D413D	AAAAGACTCATAC		120	8	0.07	130	0	0				45	0	0.00			
NGEF	25791	mdanderson.org	37	2	233746912	233746912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_019850	exon13	c.C1821A	p.F607L	GGATGTGAACGAA		39	3	0.08	55	0	0				33	0	0.00			
ESPNL	339768	mdanderson.org	37	2	239039508	239039508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_194312	exon9	c.G2153T	p.C718F	TCAGCTGCGAGGA		23	2	0.09	21	0	0				2	0	0.00			
.	140731	bcgsc.ca	37	20	56803358	56803358	+	Missense_Mutation	SNP	C	C	G	rs377420268	bycluster;alternate_allele	TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	CCCGCACGGTCAT		93	11	0.12	98	0	0				0	0				
HELZ2	85441	mdanderson.org	37	20	62195952	62195952	+	Missense_Mutation	SNP	G	G	T	rs370784417	alternate_allele	TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001037335	exon9	c.C4223A	p.P1408Q	CTGGCCGGCAGCA		32	3	0.09	38	0	0				10	0	0.00			
BTG3	10950	mdanderson.org	37	21	18981446	18981446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_006806	exon2	c.C17A	p.A6D	ACGGCAGCAATTT		111	5	0.05	97	0	0				67	0	0.00			
KRTAP10-9	386676	mdanderson.org	37	21	46047200	46047200	+	Missense_Mutation	SNP	G	G	A	rs201090014	bycluster	TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_198690	exon1	c.G112A	p.A38T	TGCTGCGCCCCGG		43	3	0.07	29	0	0				0	0				
CRYBB2P1	0	broad.mit.edu	37	22	25855682	25855683	+	RNA	INS	-	-	GTGT	rs71322752	bycluster;by1000genomes	TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	GCAGCTGGTGTGT		9	4	0.44	4	0	0				2	0	0.00			
CCR3	1232	hgsc.bcm.edu	37	3	46307688	46307688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	CCR3,NS,carcinoma,-2,1	CCR3	NM_178328	exon3	c.G1102A	p.A368T	TCCACAGCAGAGC		64	3	0.05	68	0	0		-2	1	1	0	0.00			
VPRBP	9730	broad.mit.edu	37	3	51458228	51458228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	VPRBP	NM_014703	exon14	c.C2037A	p.N679K	GCCGTTGTTGGAC		125	4	0.03	150	1	0.0066666667		107		15	0	0.00			
.	0	broad.mit.edu	37	3	112798472	112798474	+	RNA	DEL	GCG	GCG	-	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	GCG	GCG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	GCAGCAGCGGCAG		6	2	0.33	10	0	0				0	0				
USP13	8975	hgsc.bcm.edu;bcgsc.ca	37	3	179472611	179472611	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	USP13	NM_003940	exon15	c.1889delG	p.S630fs	CATCAGCCCCCCC		110	31	0.28	110	0	0		117		4	0	0.00			
ANTXR2	118429	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	80940116	80940116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	ANTXR2	NM_001145794	exon11	c.C881T	p.S294L	CTCACTGAAACAT		223	79	0.35	272	1	0.0036764706		97		136	66	0.49			
MATR3	9782	broad.mit.edu	37	5	138651822	138651822	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	MATR3	NM_018834	exon5	c.T1074C	p.P358P	GGGACCTCCACCT		132	3	0.02	191	0	0		85		453	1	0.00			
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139820640	139820640	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_024668	exon5	c.C826G	p.L276V	ACTCCCCTGATGG		64	7	0.11	106	0	0				16	2	0.13			
APBB3	10307	broad.mit.edu	37	5	139938282	139938282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	APBB3	NM_006051	exon12	c.T1370C	p.L457P	AGGGGGAGGGGCA		236	7	0.03	266	2	0.007518797		34		14	0	0.00			
BTN3A1	0	broad.mit.edu	37	6	26411341	26411341	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	BTN3A1	NM_007048	exon8	c.A969G	p.G323G	AGGGGGAGAGAGA		96	3	0.03	96	1	0.0104166667		80		12	0	0.00			
CYP21A2	1589	broad.mit.edu	37	6	32008457	32008457	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	CYP21A2	.	.	.	.	CGGCTACGACATC		282	72	0.26	325	0	0		42		2	1	0.50			
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32037571	32037571	+	Silent	SNP	C	C	T	rs376818111		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_019105	exon15	c.G5346A	p.L1782L	CACCTGCAGCTCC		74	24	0.32	110	0	0				51	17	0.33			
SYNGAP1	8831	mdanderson.org	37	6	33406612	33406612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_006772	exon10	c.G1592A	p.C531Y	TCAAGTGCACAGC		50	3	0.06	79	0	0				33	0	0.00			
AGR3	155465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	16918209	16918209	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	AGR3,NS,carcinoma,+1,1	AGR3	NM_176813	exon2	c.T34C	p.L12L	CGAGTAAGAGGCA		74	32	0.43	87	0	0		1	1	31	16	0.52			
CCT6P3	0	broad.mit.edu	37	7	64528813	64528814	+	RNA	INS	-	-	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	CTGTAACTTTTTT		7	3	0.43	8	0	0				1	0	0.00			
TFR2	7036	mdanderson.org	37	7	100231108	100231108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_003227	exon4	c.C545T	p.A182V	GAGAGCGCCGCGC		35	3	0.09	41	0	0				2	0	0.00			
DOCK4	9732	mdanderson.org	37	7	111400315	111400315	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_014705	exon39	c.C4057T	p.L1353L	CGTTCAGCATTCT		58	5	0.09	66	0	0				12	0	0.00			
GPR37	2861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	124386667	124386667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	GPR37,NS,carcinoma,+1,2	GPR37	NM_005302	exon2	c.A1754G	p.N585S	TACTCGTTGTCAT		63	29	0.46	81	0	0		1	2	26	14	0.54			
NOS3	4846	mdanderson.org	37	7	150706579	150706579	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_000603	exon20	c.G2418T	p.R806R	CAACCGGCCCGGC		21	3	0.14	27	0	0				13	0	0.00			
KAT6A	7994	mdanderson.org	37	8	41839445	41839445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001099412	exon5	c.C737T	p.P246L	AGTTCAGGGGAAA		50	3	0.06	67	0	0				11	0	0.00			
PREX2	80243	broad.mit.edu	37	8	68956766	68956766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	PREX2	NM_025170	exon8	c.T884C	p.L295P	GGTACCTTTTTCG		173	3	0.02	150	0	0		614		7	0	0.00			
AGO2	27161	mdanderson.org	37	8	141554337	141554337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_012154	exon14	c.A1814G	p.D605G	TTCCCATCCCCGG		77	5	0.06	86	2	0.023255814				10	0	0.00			
.	0	broad.mit.edu	37	9	68405044	68405045	+	RNA	INS	-	-	C	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	TCCTGATACCAAA		6	2	0.33	7	0	0				0	0				
LRSAM1	90678	mdanderson.org	37	9	130249959	130249959	+	Missense_Mutation	SNP	G	G	T	rs372452916	alternate_allele	TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001190723	exon18	c.G1264T	p.A422S	AGCATGGCCGAAA		33	3	0.09	54	0	0				62	0	0.00			
LRRC8A	56262	broad.mit.edu	37	9	131670156	131670156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	LRRC8A	NM_001127244	exon3	c.A713G	p.E238G	AGGGGGAGCAAGC		78	5	0.06	107	2	0.0186915888		69		99	1	0.01			
CSF2RA	0	broad.mit.edu	37	X	1422911	1422911	+	Splice_Site	SNP	A	A	G	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	CSF2RA	NM_001161530	exon10	c.A1144G	p.R382G	TTTAAAAGGTAAC		521	6	0.01	680	0	0		153		23	0	0.00			
MXRA5	25878	broad.mit.edu	37	X	3229354	3229354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	MXRA5	NM_015419	exon7	c.G6890A	p.R2297H	TTGGTGCGTCCAC		48	3	0.06	62	0	0		815		432	0	0.00			
G6PD	2539	hgsc.bcm.edu	37	X	153764200	153764200	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_000402	exon4	c.C309A	p.S103S	GAGGCGGGAACGG		90	5	0.06	123	0	0				118	0	0.00			
