Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MORN1	79906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2252853	2252853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_024848	exon14	c.G1463A	p.S488N	GTGCAGCTGTGGG		37	15	0.41	63	0	0				6	6	1.00			
ECE1	1889	mdanderson.org	37	1	21585201	21585201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001397	exon6	c.C747A	p.N249K	GTTGCTGTTGGAG		105	5	0.05	111	0	0				71	0	0.00			
COL8A2	1296	broad.mit.edu;mdanderson.org	37	1	36565807	36565807	+	Translation_Start_Site	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	COL8A2	NM_005202	exon1	c.C37A	p.L13M	GCAGCAGCAGCAG		51	3	0.06	50	0	0		41		6	0	0.00			
CSF1	1435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110459933	110459933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_172210	exon4	c.C244T	p.L82F	TGCTACCTTAAGA		77	25	0.32	88	0	0				18	8	0.44			
OVGP1	5016	bcgsc.ca	37	1	111957533	111957533	+	Silent	SNP	C	C	T	rs112145355	bycluster	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	OVGP1	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA		30	5	0.17	100	1	0.01		177		0	0				
CELF3	11189	hgsc.bcm.edu	37	1	151678722	151678722	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	CELF3,caecum,carcinoma,0,1	CELF3	NM_007185	exon10	c.A1104G	p.Q368Q	CTGCTGTTGCTGC		35	3	0.09	40	1	0.025		0	1	0	0				
RUSC1	23623	broad.mit.edu	37	1	155292770	155292770	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	RUSC1	NM_001105204	exon2	c.A1206C	p.P402P	GCCCCCACCCCCG		60	24	0.40	24	8	0.3333333333		85		1	0	0.00			
METTL13	51603	broad.mit.edu	37	1	171761355	171761355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	METTL13	NM_015935	exon6	c.G1673T	p.S558I	TCGCCAGCTTGGC		161	4	0.02	99	0	0		67		51	0	0.00			
XPR1	9213	broad.mit.edu	37	1	180756959	180756959	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	XPR1	NM_001135669	exon3	c.A192G	p.K64K	TGAAAAAGAACTT		540	5	0.01	381	0	0		76		20	0	0.00			
RGS7	6000	broad.mit.edu	37	1	240975327	240975327	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	RGS7_ENST00000366565,NS,carcinoma,0,2	RGS7	NM_002924	exon14	c.C973T	p.Q325X	CCCTCTGCTGGCT		137	4	0.03	96	0	0		308	2	5	0	0.00			
BEND7	222389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13541880	13541880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001100912	exon2	c.G190A	p.V64M	TCCACACACCACG		135	40	0.30	149	0	0				5	0	0.00			
NRAP	4892	mdanderson.org	37	10	115417240	115417240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001261463	exon4	c.C349A	p.L117M	TTGCCAGTGGCTG		57	3	0.05	65	0	0				0	0				
TRPM5	29850	mdanderson.org	37	11	2434720	2434720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_014555	exon13	c.C1989A	p.N663K	GATGAGGTTGGTA		125	6	0.05	122	0	0				0	0				
OR51V1	283111	mdanderson.org	37	11	5221498	5221498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001004760	exon1	c.C433A	p.L145M	TAGTCAGGATGGA		48	3	0.06	62	0	0				0	0				
TAF10	6881	mdanderson.org	37	11	6633037	6633037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_006284	exon2	c.C245T	p.A82V	CCACCCGCCGACA		42	3	0.07	50	0	0				74	0	0.00			
LOC440040	0	broad.mit.edu	37	11	49831247	49831258	+	RNA	DEL	TTTCTTATTTAT	TTTCTTATTTAT	-	rs63365360	alternate_allele	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	TTTCTTATTTAT	TTTCTTATTTAT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	.	.	.	.	TCTTTCTTTCTTA		9	3	0.33	8	0	0				0	0				
FLRT1	23769	broad.mit.edu;mdanderson.org	37	11	63884330	63884330	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	FLRT1	NM_013280	exon2	c.G591A	p.P197P	GCTGCCGCACACG		39	3	0.08	31	0	0		46		2	0	0.00			
RPS6KA4	8986	mdanderson.org	37	11	64135945	64135945	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_003942	exon11	c.G1206T	p.S402S	GGACTCGCCCTTC		43	3	0.07	43	0	0				25	0	0.00			
C11orf65	160140	hgsc.bcm.edu;broad.mit.edu	37	11	108256666	108256666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_152587	exon8	c.C768A	p.N256K	CGAAGAGTTGCTT		95	4	0.04	126	0	0				0	0				
HEPACAM	220296	mdanderson.org	37	11	124793237	124793237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_152722	exon4	c.A802G	p.R268G	CAGACCTTTTGGA		31	3	0.10	24	0	0				0	0				
SLC2A14	144195	broad.mit.edu	37	12	7982479	7982479	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	SLC2A14	NM_153449	exon6	c.C465T	p.C155C	GAGTCCGCAGAAG		793	6	0.01	270	0	0		78		0	0				
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112622476	112622476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001109662	exon61	c.A9892G	p.I3298V	TGTAGATCTCGTC		81	16	0.20	76	0	0				20	6	0.30			
VPS37B	79720	broad.mit.edu;mdanderson.org	37	12	123351821	123351821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	VPS37B	NM_024667	exon4	c.C700A	p.P234T	GGTACGGCACGGC		67	4	0.06	47	0	0		26		16	0	0.00			
TRIM13	10206	hgsc.bcm.edu	37	13	50588549	50588549	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	.	.	.	.	ATGTATATATAGA		59	6	0.10	61	0	0				2	0	0.00			
ARHGAP11A	9824	broad.mit.edu	37	15	32915726	32915726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	ARHGAP11A,NS,carcinoma,0,2	ARHGAP11A	NM_199357	exon3	c.C234A	p.D78E	AGAAGACCATATT		266	4	0.02	240	1	0.0041666667		84	2	13	0	0.00			
LMAN1L	79748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75111137	75111137	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_021819	exon5	c.C576T	p.T192T	GATCACCTACTGG		109	22	0.20	75	0	0				1	0	0.00			
CASKIN1	57524	mdanderson.org	37	16	2230285	2230285	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_020764	exon18	c.C3084A	p.P1028P	GGGAGTGGGGTGG		46	3	0.07	31	0	0				2	0	0.00			
RRN3	54700	broad.mit.edu	37	16	15188060	15188060	+	Missense_Mutation	SNP	G	G	A	rs201504364	bycluster	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	RRN3,NS,carcinoma,0,3	RRN3	NM_018427	exon1	c.C31T	p.P11S	CTCCCGGCAAACG		96	5	0.05	59	1	0.0169491525		36	3	34	0	0.00			
ITPRIPL2	162073	mdanderson.org	37	16	19126187	19126187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001034841	exon1	c.G404T	p.R135L	CTGGCCGCGCCCG		35	3	0.09	53	0	0				30	0	0.00			
RRAD	6236	broad.mit.edu	37	16	66956073	66956073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	RRAD,NS,carcinoma,0,6	RRAD	NM_001128850	exon5	c.C833A	p.A278E	CGCTTCGCCTTTT		197	11	0.06	110	2	0.0181818182		31	6	60	0	0.00			
SPIRE2	84501	mdanderson.org	37	16	89925692	89925692	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_032451	exon9	c.A1392G	p.P464P	CCCCCCAGGAGGG		51	3	0.06	25	0	0				4	0	0.00			
TRPV3	162514	broad.mit.edu	37	17	3438998	3438998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	TRPV3	NM_001258205	exon7	c.C653A	p.A218E	TTCAGCGCCGTCT		82	10	0.12	57	0	0		85		0	0				
GUCY2D	3000	mdanderson.org	37	17	7918715	7918715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_000180	exon15	c.G2839A	p.A947T	CACGCGGCAGAGA		43	3	0.07	30	0	0				0	0				
ALDH3A1	218	mdanderson.org	37	17	19642952	19642952	+	Missense_Mutation	SNP	G	G	A	rs2228100	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001135168	exon7	c.C985T	p.P329S	TCACCGGGGACTG		80	3	0.04	57	0	0				5	0	0.00			
KRTAP2-4	85294	hgsc.bcm.edu	37	17	39221816	39221816	+	Nonsense_Mutation	SNP	C	C	T	rs200049107		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	KRTAP2-4,trunk,malignant_melanoma,0,1	KRTAP2-4	NM_033184	exon1	c.G282A	p.W94X	GGTGGCCCAGCAG		17	8	0.47	9	1	0.1111111111		0	1	0	0				
RAB12	201475	mdanderson.org	37	18	8609872	8609872	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	RAB12,NS,carcinoma,0,1	RAB12	NM_001025300	exon1	c.C147A	p.G49G	TATCGGCTCCCGC		108	12	0.11	102	4	0.0392156863		0	1	32	2	0.06			
MBD1	4152	mdanderson.org	37	18	47800013	47800013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	MBD1_ENST00000457839,NS,carcinoma,0,5	MBD1_ENST00000457839	NM_001204137	exon13	c.T1442C	p.L481P	AACACAAGGTCAG		38	3	0.08	37	0	0		0	5	41	0	0.00			
CXXC1	30827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47810855	47810855	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001101654	exon9	c.C1110A	p.A370A	GTCCTTGGCATCA		59	5	0.08	41	0	0				45	0	0.00			
AZU1	566	mdanderson.org	37	19	830737	830737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001700	exon4	c.C390A	p.S130R	CAGCAGCGTGACG		12	2	0.17	23	0	0				1	0	0.00			
APBA3	9546	broad.mit.edu	37	19	3754245	3754245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	APBA3	NM_004886	exon4	c.C710A	p.P237Q	GTGGGCGGGTTCC		174	3	0.02	192	1	0.0052083333		28		26	0	0.00			
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13423558	13423558	+	Silent	SNP	G	G	T	rs372090886	alternate_allele	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001127221	exon12	c.C1596A	p.S532S	CATTTCGGACATA		30	11	0.37	58	0	0				1	1	1.00			
ATP13A1	57130	mdanderson.org	37	19	19765412	19765412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_020410	exon13	c.C1753A	p.L585I	CCACGAGGGTGCC		48	3	0.06	50	0	0				51	0	0.00			
ZNF493	284443	mdanderson.org	37	19	21587955	21587955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_145326	exon2	c.G55A	p.A19T	GATGTGGCCATAG		60	3	0.05	72	0	0				8	0	0.00			
ZNF729	100287226	hgsc.bcm.edu	37	19	22499502	22499502	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001242680	exon4	c.A3283T	p.K1095X	AAACATAAGGTAA		37	15	0.41	43	0	0				2	0	0.00			
ATP4A	495	broad.mit.edu;mdanderson.org	37	19	36041807	36041807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	ATP4A	NM_000704	exon21	c.C3008A	p.P1003H	GGCAGGGGGACCA		87	6	0.07	89	0	0		123		0	0				
PAPL	0	mdanderson.org	37	19	39589681	39589681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	FLJ16165,colon,carcinoma,0,1	FLJ16165	NM_001004318	exon4	c.G404T	p.R135L	GTCCCCGTCTGGC		45	3	0.07	36	0	0		0	1	0	0				
TPRX1	284355	broad.mit.edu	37	19	48305670	48305670	+	Missense_Mutation	SNP	A	A	G	rs201483839	bycluster	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	TPRX1,NS,carcinoma,0,3	TPRX1	NM_198479	exon2	c.T598C	p.S200P	GGACTGAGATTGG		42	7	0.17	35	6	0.1714285714		46	3	0	0				
ASAP2	8853	mdanderson.org	37	2	9533770	9533770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_003887	exon24	c.C2678T	p.A893V	AGCCTGCGCCGGG		30	3	0.10	20	0	0				41	0	0.00			
ANKRD36BP2	0	broad.mit.edu	37	2	89104503	89104504	+	RNA	INS	-	-	C	rs149625899	bycluster;by1000genomes	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	.	.	.	.	ATTTTTTTCAGAT		14	9	0.64	12	0	0				0	0				
SMPD4	55627	broad.mit.edu	37	2	130913640	130913640	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	SMPD4	NM_017951	exon14	c.C1374T	p.S458S	GGAGTCGCTGCCC		176	4	0.02	125	0	0		67		93	0	0.00			
DGKD	8527	broad.mit.edu	37	2	234368884	234368884	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	DGKD	NM_152879	exon24	c.C2874A	p.C958X	GAAGTGCGAGCTG		257	4	0.02	233	0	0		106		29	0	0.00			
SNRPB	6628	hgsc.bcm.edu	37	20	2442426	2442426	+	Silent	SNP	C	C	T	rs371293377		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	SNRPB,right_upper_lobe,carcinoma,-1,1	SNRPB	NM_198216	exon7	c.G699A	p.P233P	CATTCCCGGGGGA		91	4	0.04	82	0	0		-1	1	314	0	0.00			
MLLT10P1	140678	hgsc.bcm.edu	37	20	29637851	29637851	+	RNA	SNP	C	C	G	rs148007340		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	.	.	.	.	GGATTTCTTTCAA		14	5	0.36	16	0	0				23	1	0.04			
SRSF6	6431	mdanderson.org	37	20	42087119	42087119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_006275	exon2	c.G226T	p.D76Y	CGTCGCGATCGCG		18	2	0.11	21	0	0				102	0	0.00			
COL20A1	57642	mdanderson.org	37	20	61951525	61951525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_020882	exon24	c.G3051T	p.R1017S	GGCCAGGGGCCCC		24	2	0.08	26	0	0				0	0				
TMPRSS3	64699	broad.mit.edu	37	21	43800255	43800255	+	Missense_Mutation	SNP	G	G	T	rs200002841	alternate_allele	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	TMPRSS3	NM_001256317	exon10	c.C1019A	p.T340K	CCTGACGTCCAGC		154	5	0.03	121	1	0.0082644628		40		2	0	0.00			
TTC28	23331	broad.mit.edu	37	22	28492359	28492359	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	TTC28,caecum,carcinoma,-2,1	TTC28	NM_001145418	exon11	c.A3585G	p.G1195G	TGTCCGTCCCCTT		163	3	0.02	187	2	0.0106951872		84	1	16	0	0.00			
FBLN2	2199	broad.mit.edu	37	3	13612701	13612701	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	FBLN2	NM_001998	exon2	c.G846A	p.E282E	AGAAGAGGAGGAG		70	3	0.04	76	0	0		137		55	0	0.00			
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52668670	52668671	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	PBRM1	NM_018313	exon12	c.1249_1250insA	p.Y417fs	CAGGGTATTTTTT		141	45	0.32	129	0	0		1252		20	0	0.00			
FAM92A1P2	0	broad.mit.edu	37	4	183960484	183960484	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	.	.	.	.	ACATCCAAAAAAA		6	2	0.33	4	0	0				0	0				
CARD6	84674	broad.mit.edu	37	5	40841684	40841684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	CARD6	NM_032587	exon1	c.A200G	p.K67R	AGAAAAAGGGAGA		114	3	0.03	140	1	0.0071428571		141		3	0	0.00			
RREB1	6239	mdanderson.org	37	6	7231407	7231407	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001003700	exon10	c.C3075T	p.S1025S	GGTCAGCAGCCCT		51	3	0.06	39	0	0				12	0	0.00			
VARS2	57176	hgsc.bcm.edu;broad.mit.edu	37	6	30893760	30893760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001167734	exon29	c.A3155G	p.E1052G	AAGGGGAGGCAGG		152	7	0.05	135	0	0				36	0	0.00			
COL21A1	0	broad.mit.edu	37	6	56035495	56035495	+	Missense_Mutation	SNP	G	G	T	rs41271846	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	COL21A1	NM_030820	exon5	c.C978A	p.S326R	AATTACGCTGGTT		228	4	0.02	180	0	0		201		13	0	0.00			
TXLNB	167838	broad.mit.edu	37	6	139583903	139583903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	TXLNB	NM_153235	exon5	c.C695A	p.A232E	TGAAGCGCCTCTT		179	6	0.03	142	0	0		96		6	0	0.00			
CCT6P1	0	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	.	.	.	.	TCTTGCGCAGAAT		137	7	0.05	105	1	0.0095238095				12	0	0.00			
NEFL	4747	broad.mit.edu	37	8	24813554	24813554	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	NEFL,trunk,malignant_melanoma,0,1	NEFL	NM_006158	exon1	c.C476A	p.A159E	TGGAGCGCCTGCT		44	4	0.09	27	1	0.037037037		47	1	1	0	0.00			
PENK	5179	broad.mit.edu	37	8	57358406	57358406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	PENK,caecum,carcinoma,-1,1	PENK	NM_001135690	exon3	c.G107T	p.R36L	ACTAGGCGGTAGC		169	6	0.04	120	1	0.0083333333		59	1	15	0	0.00			
NPR2	4882	mdanderson.org	37	9	35794017	35794017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	NPR2_ENST00000342694,right_upper_lobe,carcinoma,-2,2	NPR2_ENST00000342694	NM_003995	exon2	c.G790T	p.A264S	CTCCGTGCAGGCC		49	3	0.06	59	0	0		-2	2	17	0	0.00			
NANS	54187	mdanderson.org	37	9	100839290	100839290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_018946	exon3	c.G439T	p.A147S	AAGACAGCCAAAA		45	3	0.07	42	0	0				86	0	0.00			
AKNA	80709	mdanderson.org	37	9	117099491	117099491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_030767	exon22	c.T4163C	p.I1388T	AGCTGGATGGAGT		63	3	0.05	52	0	0				48	1	0.02			
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135140214	135140214	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_015046	exon26	c.G7446C	p.E2482D	GGACCCCTCTGGG		88	22	0.25	70	0	0				57	31	0.54			
CEL	1056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135940444	135940444	+	Missense_Mutation	SNP	G	G	A	rs201336247	bycluster	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	CEL,NS,carcinoma,0,1	CEL	NM_001807	exon4	c.G367A	p.V123I	CTGCCCGTTATGA		62	18	0.29	51	0	0		0	1	24	11	0.46			
COX2	5743	hgsc.bcm.edu	37	MT	7981	7981	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	ENST00000361739	exon1	c.C396T	p.D132D	AGGCGACCTGCGA		16	6	0.38	7	0	0				0	0				
FAM120C	54954	hgsc.bcm.edu	37	X	54209318	54209318	+	Missense_Mutation	SNP	A	A	G	rs199506922		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_017848	exon1	c.T314C	p.L105P	GGCGGCAGCGGAG		17	9	0.53	11	0	0				0	0				
ZC3H12B	340554	broad.mit.edu	37	X	64722643	64722643	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	ZC3H12B	NM_001010888	exon5	c.A2065C	p.T689P	GGGGCAACCCCCC		153	21	0.14	65	11	0.1692307692		144		1	0	0.00			
