Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PRAMEF2	65122	broad.mit.edu	37	1	12919840	12919840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	PRAMEF2,NS,carcinoma,0,1	PRAMEF2	NM_023014	exon3	c.T580C	p.Y194H	ATTAAATATCTCA		95	3	0.03	104	1	0.0096153846		85	1	1	0	0.00			
.	0	bcgsc.ca	37	1	27527650	27527650	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	GAAGGATGGCTCT		56	12	0.21	73	0	0				298	0	0.00			
GMEB1	10691	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	29016676	29016676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	GMEB1	NM_006582	exon3	c.A219G	p.I73M	CACGATACACAAA		127	12	0.09	147	0	0		28		21	5	0.24			
COL16A1	1307	mdanderson.org	37	1	32156172	32156172	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001856	exon21	c.C1440T	p.G480G	CGAGCTGCCCTGT		50	3	0.06	75	0	0				28	0	0.00			
SLC9C2	284525	mdanderson.org	37	1	173556912	173556912	+	Missense_Mutation	SNP	C	C	T	rs147559775	bycluster;by1000genomes	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_178527	exon5	c.G415A	p.V139I	TTATAACGACATA		50	3	0.06	78	0	0	0			0	0				
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	234040876	234040876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_173508	exon1	c.T53C	p.V18A	TTGCCGTGTGAGT		35	8	0.23	40	0	0				0	0				
C10orf114	399726	mdanderson.org	37	10	21784697	21784697	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001010911	exon2	c.C243A	p.R81R	AGGGCTGCGGGTT		21	2	0.10	26	0	0				0	0				
HSD17B7P2	0	broad.mit.edu	37	10	38652034	38652035	+	RNA	INS	-	-	TT	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	TTAACTCTTTTTT		5	2	0.40	4	0	0				0	0				
HOGA1	112817	mdanderson.org	37	10	99359464	99359464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_138413	exon4	c.G496T	p.V166L	CCTGTGGTGCTGT		46	3	0.07	77	0	0				0	0				
KCNQ1	3784	mdanderson.org	37	11	2591884	2591884	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_000218	exon3	c.G504T	p.G168G	CTTCGGGACGGAG		34	3	0.09	30	0	0				4	0	0.00			
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46898070	46898070	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_002334	exon25	c.G3483A	p.L1161L	CCACACCAACACT		69	14	0.20	101	0	0				33	8	0.24			
TMX2-CTNND1	100528016	hgsc.bcm.edu	37	11	57509552	57509552	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	GGGTTCCGAAGTA		81	20	0.25	81	0	0				3	1	0.33			
EHBP1L1	254102	mdanderson.org	37	11	65349378	65349378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001099409	exon9	c.C1235A	p.A412D	TCAGAGCTGGGGA		37	3	0.08	52	0	0				23	0	0.00			
ARAP1	116985	mdanderson.org	37	11	72425304	72425304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001040118	exon4	c.C572A	p.S191Y	TCCTCAGACTGTG		29	3	0.10	33	0	0				20	0	0.00			
CEP164	22897	mdanderson.org	37	11	117267810	117267810	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001271933	exon26	c.G3291T	p.L1097L	CAGCCTGTCCTCC		45	3	0.07	69	0	0				18	0	0.00			
TRIM29	23650	mdanderson.org	37	11	119998158	119998158	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_012101	exon3	c.G1020T	p.V340V	TTGGTCCACAGCA		47	3	0.06	96	0	0				2	0	0.00			
ERC1	23085	broad.mit.edu	37	12	1292505	1292505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	ERC1	NM_178040	exon11	c.A2075G	p.K692R	TGAAAAAGGACTC		531	4	0.01	294	1	0.0034013605		95		24	0	0.00			
PLEKHG6	55200	mdanderson.org	37	12	6437022	6437022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001144856	exon15	c.G2273T	p.R758L	AGCCCCGGGACAG		39	3	0.08	22	0	0				130	0	0.00			
RBP5	0	broad.mit.edu	37	12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		11	4	0.36	5	0	0		20		0	0				
DUSP16	80824	broad.mit.edu	37	12	12630662	12630662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	DUSP16,NS,carcinoma,0,1	DUSP16	NM_030640	exon7	c.C1103A	p.P368Q	AGCGACGGCTGCA		130	3	0.02	71	0	0		64	1	121	0	0.00			
.	0	broad.mit.edu	37	12	52493869	52493869	+	RNA	DEL	C	C	-	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	TCCTCTCCCCCCC		6	2	0.33	5	0	0				0	0				
.	0	broad.mit.edu	37	12	127445885	127445886	+	RNA	INS	-	-	C	rs56291813	bycluster;by1000genomes	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	CCAAATTCCCCCC		6	2	0.33	11	0	0				0	0				
.	0	broad.mit.edu	37	14	19857036	19857036	+	RNA	SNP	A	A	G	rs374719458		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	ATAATAAAGTTCA		47	4	0.09	60	1	0.0166666667				3	1	0.33			
TCL6	27004	mdanderson.org	37	14	96137740	96137740	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	GACTGTGCCAGCA		47	3	0.06	42	0	0				0	0				
LOC727924	0	broad.mit.edu	37	15	22332432	22332432	+	RNA	SNP	C	C	T	rs376977769		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	TTCTAACGTGACA		37	4	0.11	45	1	0.0222222222				0	0				
LOC727924	0	broad.mit.edu	37	15	22332442	22332442	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	ACAGAACTTGTTC		40	4	0.10	50	1	0.02				0	0				
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40933157	40933157	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_170589	exon15	c.A5808G	p.Q1936Q	AAGTCAATATGTT		53	13	0.25	61	0	0				9	5	0.56			
ZNF598	90850	mdanderson.org	37	16	2049632	2049632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	ZNF598,NS,carcinoma,+1,1	ZNF598	NM_178167	exon11	c.C1918A	p.P640T	GGGCCGGGCCCTC		16	3	0.19	28	0	0		1	1	110	0	0.00			
ZP2	7783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21209141	21209141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_003460	exon18	c.G2041A	p.G681R	TGCTCCCACTTGC		239	36	0.15	245	0	0				1	0	0.00			
ZNF423	23090	mdanderson.org	37	16	49670954	49670954	+	Silent	SNP	C	C	A	rs143934881	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_015069	exon4	c.G2109T	p.S703S	ATCCACCGAGGAA		49	3	0.06	67	0	0				13	0	0.00			
CLUH	23277	mdanderson.org	37	17	2595133	2595133	+	Silent	SNP	G	G	A	rs149829712	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_015229	exon24	c.C3594T	p.T1198T	CTGCTGGGTCAGG		24	4	0.17	21	0	0				324	55	0.17			
USP6	9098	mdanderson.org	37	17	5037263	5037263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_004505	exon7	c.G466T	p.V156F	AACCATGTCTTCT		37	3	0.08	55	0	0				3	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		173	6	0.03	181	13	0.0718232044				31	13	0.42	rescued with RNA-seq		
CDC27	996	mdanderson.org	37	17	45234372	45234372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001114091	exon7	c.G749A	p.G250E	GAAGTTCCTGTTC		55	3	0.05	53	1	0.0188679245				19	0	0.00			
CDC27	996	mdanderson.org	37	17	45234397	45234397	+	Missense_Mutation	SNP	G	G	A	rs7350908	bycluster;byhapmap	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001114091	exon7	c.C724T	p.P242S	TATCAGGTGAAAT		44	3	0.07	53	1	0.0188679245				19	0	0.00			
BZRAP1	9256	mdanderson.org	37	17	56387455	56387455	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001261835	exon21	c.C3764A	p.S1255X	AGGTCTGAGTTGC		32	3	0.09	42	0	0				7	0	0.00			
METTL4	64863	ucsc.edu;bcgsc.ca	37	18	2544256	2544256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	METTL4	NM_022840	exon8	c.C1211A	p.P404Q	TGGTCTGGAATGG		31	4	0.13	61	0	0		40		11	0	0.00			
MIER2	54531	mdanderson.org	37	19	308613	308613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_017550	exon12	c.C1162A	p.R388S	CCGGGCGCGGACG		32	3	0.09	43	0	0				100	0	0.00			
ADAMTS10	81794	broad.mit.edu;ucsc.edu	37	19	8657036	8657036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	ADAMTS10	.	.	.	.	ACACTCGTCGGCC		37	4	0.11	53	0	0		132		0	0				
BEST2	54831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12864150	12864150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_017682	exon2	c.C229A	p.P77T	CTCATCCCTGTCT		92	14	0.15	114	0	0				0	0				
GYS1	2997	mdanderson.org	37	19	49472837	49472837	+	Nonsense_Mutation	SNP	G	G	T	rs137913986	bycluster;alternate_allele	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_002103	exon16	c.C1922A	p.S641X	GGCACCGAGGCTG		15	3	0.20	17	0	0				51	0	0.00			
RGPD4	285190	mdanderson.org	37	2	108487774	108487774	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_182588	exon20	c.T3314A	p.V1105E	AACAAGTACTAAA		23	2	0.09	37	0	0				3	0	0.00			
CCDC115	84317	mdanderson.org	37	2	131098600	131098600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	CCDC115,NS,carcinoma,0,1	CCDC115	NM_032357	exon4	c.G311A	p.R104H	CCCTTGCGCCTCC		24	3	0.13	35	0	0		0	1	163	1	0.01			
ANKRD30BL	554226	broad.mit.edu	37	2	132919171	132919171	+	Silent	SNP	A	A	G	rs199695856	bycluster	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	ANKRD30BL	.	.	.	.	ATCCCCATGGTGA		111	5	0.05	132	0	0		36		2	0	0.00			
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	Silent	SNP	G	G	A	rs111295191	bycluster	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	ANKRD30BL	.	.	.	.	AGAGTCGTTGTTG		127	4	0.03	139	0	0		36		3	0	0.00			
IFIH1	64135	broad.mit.edu	37	2	163174668	163174668	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	IFIH1	NM_022168	exon1	c.C150A	p.V50V	GGTGGCGACTGTC		95	3	0.03	86	0	0		102		4	0	0.00			
KCNH7	90134	mdanderson.org	37	2	163253438	163253438	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	KCNH7,neck,malignant_melanoma,0,1	KCNH7	NM_033272	exon11	c.G2425T	p.G809X	TTTCTCCAAATAT		50	3	0.06	53	0	0		0	1	0	0				
MIR548N	100302152	hgsc.bcm.edu	37	2	179415021	179415021	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	GAAATACTATGTA		40	16	0.40	40	0	0				6	4	0.67			
ESPNL	339768	mdanderson.org	37	2	239039967	239039967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_194312	exon9	c.C2612T	p.P871L	ACCTGCCGGCGGA		39	3	0.08	72	0	0				0	0				
ATG4B	23192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242610198	242610198	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_013325	exon11	c.1014+1G>T	.	AAAAAGGTTTGTA		72	14	0.19	61	0	0				7	3	0.43			
CENPB	1059	mdanderson.org	37	20	3766118	3766118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001810	exon1	c.G1013A	p.R338H	GCCTGGCGGTAGT		32	3	0.09	35	0	0				148	0	0.00			
CEBPB	1051	mdanderson.org	37	20	48808402	48808402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_005194	exon1	c.C832T	p.R278C	ATCCGGCGCGAGC		36	3	0.08	23	0	0				174	0	0.00			
HSCB	150274	mdanderson.org	37	22	29139966	29139966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_172002	exon2	c.G333T	p.Q111H	GTCTCAGGTAGCT		46	3	0.07	61	0	0				160	0	0.00			
PIK3IP1	113791	mdanderson.org	37	22	31679110	31679110	+	Missense_Mutation	SNP	G	G	T	rs2040533	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_052880	exon6	c.C752A	p.T251N	GGGGTGGTGCCCT		57	2	0.04	68	0	0				47	0	0.00			
RANGAP1	5905	mdanderson.org	37	22	41660689	41660689	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_002883	exon5	c.C459A	p.G153G	GCCCATGCCACAG		33	3	0.09	41	0	0				412	1	0.00			
PANX2	56666	hgsc.bcm.edu	37	22	50617594	50617595	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	PANX2	NM_052839	exon3	c.1922_1923insC	p.G641fs	ACGGGGGCCCCCG		82	11	0.13	87	0	0		69		26	0	0.00			
CAPN7	23473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15282061	15282061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_014296	exon13	c.T1489C	p.W497R	AAAAACTGGACTC		69	12	0.17	81	0	0				13	2	0.15			
DHX30	22907	broad.mit.edu	37	3	47890473	47890473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	DHX30	NM_138615	exon18	c.G2833T	p.G945C	GTCGCCGGCTGGG		60	3	0.05	62	0	0		101		202	0	0.00			
MST1R	4486	mdanderson.org	37	3	49940449	49940449	+	Nonsense_Mutation	SNP	G	G	T	rs200307089	alternate_allele	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001244937	exon1	c.C594A	p.Y198X	TGCCACGTAGAAA		14	2	0.14	33	0	0				1	0	0.00			
RASA2	5922	mdanderson.org	37	3	141205997	141205997	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_006506	exon1	c.C72T	p.P24P	AGAGCCCGAGGCC		50	3	0.06	69	0	0				0	0				
DDX60	55601	broad.mit.edu	37	4	169176947	169176947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	DDX60	NM_017631	exon26	c.A3472G	p.R1158G	GAGGCCTTTTTGT		87	4	0.05	92	0	0		304		13	0	0.00			
RAPGEF6	51735	broad.mit.edu;mdanderson.org	37	5	130799747	130799747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	RAPGEF6_ENST00000509018,face,carcinoma,0,2	RAPGEF6	NM_001164387	exon19	c.C2482A	p.Q828K	TGAGTTGAATTCT		79	5	0.06	101	0	0		361	2	1	0	0.00			
CMAHP	0	broad.mit.edu	37	6	25115177	25115182	+	RNA	DEL	GTTTTT	GTTTTT	-	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	GTTTTT	GTTTTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	CMAHP	.	.	.	.	GGTCACGTTTTTG		25	7	0.28	18	0	0		6		0	0				
HIST1H4G	8369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	26246971	26246971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_003547	exon1	c.C235T	p.R79C	TCTTGCGCTTGGC		92	5	0.05	137	0	0				0	0				
KCTD20	222658	bcgsc.ca;mdanderson.org	37	6	36446943	36446943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	KCTD20	NM_173562	exon4	c.G480T	p.E160D	CAATGAGAAGGGA		81	5	0.06	83	1	0.0120481928		37		14	0	0.00			
C6orf170	221322	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	121562693	121562693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	C6orf170	NM_152730	exon19	c.C2163A	p.S721R	ATGCCTGCTGACC		62	5	0.08	58	0	0		146		1	0	0.00			
PDE10A	10846	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165809921	165809921	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	PDE10A	NM_001130690	exon14	c.T1306G	p.C436G	AAATGCACTCTGA		120	16	0.13	125	6	0.048		154		0	0				
CYTH3	9265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6204910	6204910	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_004227	exon12	c.C1121G	p.S374C	TTGATGGATTTCA		204	24	0.12	197	0	0				54	11	0.20			
FERD3L	222894	hgsc.bcm.edu	37	7	19184768	19184768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	FERD3L,NS,carcinoma,+1,1	FERD3L	NM_152898	exon1	c.A218G	p.D73G	TCTCCGTCCCCCT		74	3	0.04	77	0	0		1	1	0	0				
COL26A1	136227	broad.mit.edu	37	7	101063621	101063624	+	RNA	DEL	GACA	GACA	-	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	GACA	GACA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	GTGTTTGACAGAC		6	2	0.33	4	0	0				0	0				
IFRD1	3475	broad.mit.edu;bcgsc.ca	37	7	112115496	112115497	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	IFRD1	NM_001007245	exon13	c.1278_1279del	p.426_427del	ATATAACTCTGCA		41	9	0.22	46	0	0		46		287	0	0.00			
CCDC136	64753	hgsc.bcm.edu	37	7	128441311	128441311	+	Nonsense_Mutation	SNP	G	G	T	rs200870724	by1000genomes;alternate_allele	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	NAG6,NS,carcinoma,0,3	NAG6	NM_001201372	exon5	c.G568T	p.E190X	GAAATAGAACAGG		75	3	0.04	45	0	0		0	3	16	0	0.00			
CHPF2	54480	mdanderson.org	37	7	150935131	150935131	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_019015	exon4	c.G1683T	p.L561L	GAGGCTGGCCTGG		49	3	0.06	46	0	0				200	0	0.00			
MYOM2	9172	mdanderson.org	37	8	2000361	2000361	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_003970	exon3	c.G193T	p.G65X	CTGGGAGGAACCA		52	3	0.06	83	0	0				0	0				
LOC392232	0	bcgsc.ca	37	8	73139272	73139272	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	CTGCCTGCTCCTT		38	7	0.18	33	0	0				3	0	0.00			
COL14A1	7373	mdanderson.org	37	8	121327809	121327809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_021110	exon39	c.G4589T	p.G1530V	ATACTGGCCTTCC		41	3	0.07	66	0	0				17	0	0.00			
PSCA	8000	mdanderson.org	37	8	143762760	143762760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_005672	exon2	c.G41T	p.C14F	TGCTGTGCTACTC		43	3	0.07	59	0	0				0	0				
.	0	bcgsc.ca	37	9	44059412	44059412	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	ATTTCTGAGAATT		16	4	0.25	43	0	0				0	0				
ANKRD19P	0	broad.mit.edu	37	9	95600105	95600105	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	TGGTTATTTTTTT		7	3	0.43	8	0	0				2	0	0.00			
WNK2	65268	mdanderson.org	37	9	95997149	95997149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_006648	exon4	c.G1135T	p.V379F	GTGGACGTCTATG		69	4	0.06	90	0	0				6	0	0.00			
HSPA5	3309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127999044	127999044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	HSPA5	NM_005347	exon8	c.G1792A	p.V598I	CTTCTACAGCTTT		125	13	0.10	140	1	0.0071428571		41		5985	1219	0.20			
GAPVD1	26130	broad.mit.edu	37	9	128099583	128099583	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	GAPVD1	NM_015635	exon16	c.G2671C	p.V891L	GGAGCTGTGGGAG		84	3	0.04	108	0	0		124		19	0	0.00			
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139906169	139906169	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_212533	exon36	c.C5658T	p.V1886V	GATGATGACACAG		63	8	0.13	69	0	0				21	1	0.05			
KRBOX4	55634	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	46332341	46332341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001129898	exon6	c.A410G	p.D137G	AATTTGATTCTGT		228	7	0.03	147	0	0				27	0	0.00			
HUWE1	10075	mdanderson.org	37	X	53672397	53672397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_031407	exon7	c.G370A	p.A124T	AGGAAGCCAATAA		35	3	0.09	43	0	0				1	0	0.00			
