Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CELA2B	51032	broad.mit.edu	37	1	15813823	15813823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	CELA2B	NM_015849	exon7	c.G683A	p.R228Q	ACGGCCGGTGGGA		99	4	0.04	90	0	0		37		0	0				
MST1L	0	broad.mit.edu	37	1	17084508	17084508	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001271733	exon12	c.A1590G	p.L530L	CCGCTGTAGGCCT		341	14	0.04	339	0	0				23	0	0.00			
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23763670	23763670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_017707	exon14	c.T1295C	p.V432A	CTCTTCACCTCCG		122	15	0.12	120	0	0				45	9	0.20			
PDIK1L	149420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	26441057	26441057	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001243532	exon2	c.C258G	p.H86Q	GTCCCACGGCTCT		104	8	0.08	87	0	0				6	1	0.17			
WDTC1	23038	broad.mit.edu	37	1	27632718	27632718	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	WDTC1	NM_001276252	exon16	c.T1878G	p.G626G	GGAGGGTGCTTCA		110	10	0.09	101	6	0.0594059406		69		102	5	0.05			
TEX38	374973	broad.mit.edu	37	1	47138732	47138732	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001145474	exon2	c.C225T	p.Y75Y	GCGCTACGGCATG		116	4	0.03	114	0	0				12	0	0.00			
LRP8	7804	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	53724042	53724042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_004631	exon14	c.G2158T	p.A720S	GACAGGCACATGT		163	12	0.07	134	0	0				43	2	0.05			
CELSR2	1952	mdanderson.org	37	1	109792751	109792751	+	Missense_Mutation	SNP	T	T	C	rs200277265		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	CELSR2,colon,carcinoma,0,1	CELSR2	NM_001408	exon1	c.T50C	p.L17P	CGCCGCTGCTGCT		48	3	0.06	33	0	0		0	1	1	0	0.00			
ANKRD35	148741	broad.mit.edu	37	1	145560171	145560171	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	ANKRD35	NM_144698	exon8	c.G657T	p.G219G	CACAGGGCATGAT		153	4	0.03	184	0	0		96		0	0				
PRG4	10216	broad.mit.edu	37	1	186276240	186276240	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	PRG4,NS,carcinoma,0,4	PRG4	NM_005807	exon7	c.T1389C	p.T463T	CACCACTCCCAAG		54	15	0.28	34	2	0.0588235294		259	4	0	0				
CR1	1378	broad.mit.edu	37	1	207751340	207751340	+	Missense_Mutation	SNP	C	C	G	rs113578474	bycluster;alternate_allele	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	CR1	NM_000651	exon29	c.C4728G	p.S1576R	CTGGAGCGGCCCC		401	5	0.01	487	1	0.0020533881		354		0	0				
.	0	broad.mit.edu	37	10	48968566	48968566	+	RNA	SNP	A	A	G	rs80150874		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	.	.	.	.	GATAACAAACTGG		46	7	0.15	51	1	0.0196078431				1	0	0.00			
USP54	159195	hgsc.bcm.edu	37	10	75279658	75279658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_152586	exon17	c.C2575T	p.R859W	GGCTCCGTGCTTT		83	4	0.05	67	0	0				10	0	0.00			
CRTAC1	55118	mdanderson.org	37	10	99655119	99655119	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001206528	exon11	c.T1369A	p.F457I	TGGCAAAGGCCCC		49	3	0.06	50	0	0				19	0	0.00			
MUC2	4583	mdanderson.org	37	11	1092971	1092971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	MUC2_ENST00000441003,NS,carcinoma,0,1	MUC2_ENST00000441003	NM_002457	exon30	c.C4790T	p.T1597I	CCCCAACACCCAC		16	2	0.13	38	1	0.0263157895		0	1	0	0				
ZDHHC5	25921	mdanderson.org	37	11	57456091	57456091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_015457	exon4	c.G338T	p.R113L	TTTACCGTCCCCC		56	3	0.05	106	0	0				72	0	0.00			
LTBP3	4054	broad.mit.edu	37	11	65325326	65325328	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	CAG	CAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	LTBP3	NM_001130144	exon1	c.103_105del	p.35_35del	CAGGCCCAGCAGC		6	2	0.33	10	0	0		55		0	0				
RIN1	9610	broad.mit.edu	37	11	66103323	66103323	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	RIN1	NM_004292	exon3	c.A292C	p.T98P	GGCGGGTGTTAGA		47	15	0.32	47	7	0.1489361702		64		4	0	0.00			
EXPH5	23086	broad.mit.edu	37	11	108381652	108381652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	EXPH5	NM_015065	exon6	c.C4582A	p.P1528T	AGTTTGGTTCATC		99	4	0.04	131	3	0.0229007634		193		0	0				
ST3GAL4	6484	broad.mit.edu;mdanderson.org	37	11	126276436	126276436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	ST3GAL4	NM_001254757	exon3	c.G85T	p.D29Y	CGGGAAGACAGGT		53	4	0.08	79	0	0		25		116	0	0.00			
BCAT1	586	broad.mit.edu	37	12	24995152	24995152	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	BCAT1	NM_001178093	exon7	c.C717T	p.Y239Y	TGAGCCGTAATTC		154	4	0.03	73	0	0		44		2119	1	0.00			
TUBA1C	84790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49663613	49663613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_032704	exon3	c.G229A	p.E77K	CCAGATGAAGTTC		135	21	0.16	109	0	0				7170	1610	0.22			
BEST3	144453	broad.mit.edu	37	12	70049388	70049388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	BEST3	NM_032735	exon10	c.C1306A	p.L436M	CATCCAGTAGGTC		75	3	0.04	78	0	0		129		0	0				
NBEA	26960	mdanderson.org	37	13	35672447	35672447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_015678	exon11	c.G1585A	p.A529T	CTGTTGGCATTCC		34	3	0.09	46	0	0				0	0				
RNF113B	140432	mdanderson.org	37	13	98829478	98829478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_178861	exon1	c.C13A	p.P5T	GAGAAGGTGGCGC		19	3	0.16	27	0	0				10	0	0.00			
IRS2	8660	mdanderson.org	37	13	110434903	110434903	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_003749	exon1	c.C3498T	p.A1166A	GTTGTGGGCGAAG		42	3	0.07	46	0	0				4	0	0.00			
NRL	4901	broad.mit.edu;mdanderson.org	37	14	24551760	24551760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	NRL	NM_006177	exon2	c.C298A	p.Q100K	GACCCTGCAGCAG		75	4	0.05	88	0	0		8		5	0	0.00			
LTB4R2	56413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24780848	24780848	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_019839	exon2	c.G978C	p.E326D	CATGGAGCTCCGA		38	5	0.13	41	1	0.0243902439				25	5	0.20			
LINGO1	84894	ucsc.edu	37	15	77906739	77906739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	LINGO1	NM_032808	exon2	c.G1510A	p.G504S	CGTTGCCGCCCGC		43	4	0.09	51	0	0		76		208	1	0.00			
AXIN1	8312	broad.mit.edu;mdanderson.org	37	16	396715	396715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	AXIN1	NM_181050	exon2	c.C311A	p.T104N	AGGAAAGTCCTGA		46	3	0.07	61	0	0		290		57	0	0.00			
METRN	79006	mdanderson.org	37	16	767135	767135	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_024042	exon4	c.G630T	p.V210V	CACTGTGGTGGCC		36	3	0.08	59	0	0				94	0	0.00			
ZSCAN10	84891	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	3142732	3142732	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	ZSCAN10,NS,carcinoma,-1,1	ZSCAN10	NM_032805	exon1	c.C42A	p.C14X	GTGGCCGCAGAGC		72	4	0.06	78	0	0		-1	1	365	2	0.01			
ACSM5	54988	mdanderson.org	37	16	20441066	20441066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_017888	exon8	c.G1068T	p.E356D	GAGGGAGAAGTGG		38	3	0.08	47	0	0				1	0	0.00			
TNRC6A	27327	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24826529	24826529	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	TNRC6A	NM_014494	exon19	c.C4734T	p.N1578N	TATGAACAGCAGT		84	17	0.20	115	1	0.0086956522		171		36	6	0.17			
MAZ	4150	mdanderson.org	37	16	29818593	29818593	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_002383	exon2	c.G487C	p.A163P	GCCACCGCCGTCG		37	9	0.24	41	6	0.1463414634				56	4	0.07			
CCDC102A	92922	mdanderson.org	37	16	57552171	57552171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_033212	exon6	c.G1057A	p.E353K	CGTTTTCGGCCTG		23	2	0.09	27	0	0				27	0	0.00			
ZNF469	84627	mdanderson.org	37	16	88501768	88501768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001127464	exon2	c.G7806T	p.K2602N	GGGGAAGTCAAAT		26	3	0.12	55	0	0				4	0	0.00			
PELP1	27043	broad.mit.edu	37	17	4575679	4575679	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	PELP1	NM_014389	exon16	c.A2607G	p.G869G	GGGTCCTCCCCCA		157	5	0.03	135	3	0.0222222222		102		744	4	0.01			
NLGN2	57555	broad.mit.edu	37	17	7320787	7320787	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	NLGN2	NM_020795	exon7	c.G2177C	p.G726A	GTGGGGGCCCCCT		23	6	0.26	14	1	0.0714285714		61		29	0	0.00			
DNAH2	146754	broad.mit.edu;mdanderson.org	37	17	7702429	7702429	+	Silent	SNP	G	G	A	rs149452093		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	DNAH2	NM_020877	exon55	c.G8568A	p.S2856S	CCAGTCGCATATC		87	4	0.05	88	0	0		498		0	0				
ERBB2	2064	broad.mit.edu	37	17	37879599	37879599	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	ERBB2	NM_004448	exon17	c.G1974T	p.V658V	TGCGGTGGTTGGC		120	5	0.04	106	0	0		429		119	0	0.00			
TANC2	26115	broad.mit.edu	37	17	61498459	61498459	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	TANC2_ENST00000389520,NS,carcinoma,0,2	TANC2	NM_025185	exon25	c.C5116T	p.R1706X	GCATACCGAGGTG		101	3	0.03	85	0	0		266	2	3	0	0.00			
ITGB4	3691	mdanderson.org	37	17	73733624	73733624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_000213	exon18	c.C2119T	p.P707S	GACTGCCCTCCGG		52	3	0.06	56	0	0				32	0	0.00			
PCYT2	5833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79866849	79866849	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_002861	exon3	c.G243C	p.Q81H	GATGGCCTGCACC		119	16	0.13	142	0	0				84	11	0.13			
LRRC45	201255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79988252	79988252	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_144999	exon16	c.C1726T	p.L576L	GTGGAGCTGCAGG		62	7	0.11	59	0	0				68	18	0.26			
CCDC102B	79839	broad.mit.edu	37	18	66504389	66504389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	CCDC102B,NS,carcinoma,-1,1	CCDC102B	NM_001093729	exon4	c.C389T	p.A130V	AGATGGCGATGAA		105	3	0.03	189	0	0		92	1	7	0	0.00			
TICAM1	148022	mdanderson.org	37	19	4818059	4818059	+	Missense_Mutation	SNP	C	C	T	rs201291933	bycluster;by1000genomes	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_182919	exon2	c.G331A	p.A111T	GCGAGGCGGGGCA		21	2	0.10	32	0	0	0			5	0	0.00			
CCDC159	126075	broad.mit.edu	37	19	11464523	11464523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	CCDC159	NM_001080503	exon9	c.G745T	p.A249S	TCGGGGGCCTGTC		73	6	0.08	94	1	0.0106382979		35		10	1	0.10			
MAN2B1	4125	mdanderson.org	37	19	12766567	12766567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_000528	exon14	c.C1771A	p.R591S	GTGCGCGGGCCTG		53	3	0.06	74	0	0				227	0	0.00			
SIGLEC11	114132	broad.mit.edu	37	19	50462655	50462655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	SIGLEC11	NM_052884	exon5	c.T1019C	p.L340P	GAGCCAAGCCTGT		75	3	0.04	98	0	0		70		0	0				
APOB	338	mdanderson.org	37	2	21234845	21234845	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_000384	exon26	c.G4895C	p.G1632A	TCAGTGCCTAAGA		49	3	0.06	47	0	0				0	0				
PPP1R21	129285	broad.mit.edu	37	2	48698417	48698417	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	PPP1R21	NM_001135629	exon11	c.1000-1G>T	.	TTTCCAGGAGACA		308	5	0.02	298	1	0.0033557047		47		1	0	0.00			
.	0	broad.mit.edu	37	2	58688842	58688843	+	RNA	DEL	CT	CT	-	rs34082148	bycluster;alternate_allele	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	.	.	.	.	TGCTAGCTCTCTC		92	7	0.08	123	0	0				33	0	0.00			
EDAR	10913	broad.mit.edu	37	2	109527398	109527398	+	Silent	SNP	G	G	A	rs191975348	bycluster;by1000genomes	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	EDAR	.	.	.	.	GGGGCCGTCACCT		172	6	0.03	180	0	0		49		0	0				
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152320914	152320914	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_018151	exon30	c.C4880G	p.T1627S	GTAATACTGTAAT		88	24	0.27	112	0	0				70	22	0.31			
C2orf72	257407	mdanderson.org	37	2	231906019	231906019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001144994	exon2	c.G643T	p.A215S	GAAGGAGCCTGGG		48	3	0.06	49	0	0				0	0				
OCSTAMP	128506	ucsc.edu;bcgsc.ca	37	20	45170332	45170332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	OCSTAMP	NM_080721	exon3	c.G1282T	p.A428S	CGATGGCATGCCG		34	4	0.12	44	0	0		34		0	0				
MOCS3	27304	mdanderson.org	37	20	49575689	49575689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_014484	exon1	c.G310T	p.A104S	GCAGCGGCCGGCG		46	3	0.07	60	0	0				27	0	0.00			
MIR3648	0	broad.mit.edu	37	21	9825838	9825839	+	RNA	INS	-	-	GCG	rs372061766	bycluster	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	.	.	.	.	CGCGACTGCGGCG		6	3	0.50	4	0	0				0	0				
.	0	broad.mit.edu	37	21	15461084	15461085	+	RNA	DEL	AG	AG	-	rs199958475	by1000genomes;alternate_allele	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	AG	AG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	.	.	.	.	AAAAAAAGAAAAG		9	3	0.33	8	0	0				0	0				
.	644637	bcgsc.ca	37	22	16349432	16349432	+	RNA	SNP	G	G	A	rs2106719	bycluster;byfrequency	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	.	.	.	.	ACAAGCGCAGACC		42	7	0.17	38	0	0				0	0				
RIMBP3	85376	mdanderson.org	37	22	20460125	20460125	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_015672	exon1	c.A1177C	p.T393P	GCAGGGTATAACA		51	4	0.08	127	2	0.0157480315				5	0	0.00			
CBY1	25776	mdanderson.org	37	22	39067165	39067165	+	Missense_Mutation	SNP	G	G	T	rs140554782	alternate_allele	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001002880	exon5	c.G404T	p.R135L	TCTTGCGGCTGAA		47	3	0.06	70	0	0				72	0	0.00			
CERK	64781	mdanderson.org	37	22	47083093	47083093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_022766	exon13	c.C1552A	p.Q518K	CCAGCTGGCAGTG		48	3	0.06	40	0	0				40	0	0.00			
SYCE3	644186	mdanderson.org	37	22	50989812	50989812	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001123225	exon3	c.C129A	p.A43A	GTCATAGGCCATC		35	3	0.09	43	0	0				20	0	0.00			
NUP210	23225	broad.mit.edu	37	3	13395547	13395547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	NUP210	NM_024923	exon17	c.C2389T	p.R797C	ACCGGCGGCCCTC		130	4	0.03	173	0	0		182		27	0	0.00			
COPG1	22820	broad.mit.edu	37	3	128973510	128973510	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_016128	exon6	c.324-1G>T	.	CCTGCAGCCTAAC		52	3	0.06	60	0	0				14	0	0.00			
MUC4	4585	broad.mit.edu;mdanderson.org	37	3	195509308	195509308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	MUC4	NM_018406	exon2	c.C9143T	p.S3048L	GATGCTGAGGAAG		88	5	0.06	100	1	0.01		1505		20	1	0.05			
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3319118	3319118	+	Silent	SNP	C	C	T	rs372019148		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_002926	exon2	c.C1221T	p.D407D	TCTGGACGGGGAC		57	14	0.25	113	0	0				4	1	0.25			
PACRGL	133015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20706400	20706400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001258345	exon3	c.G170C	p.R57T	ATCCTAGACCAAG		126	32	0.25	220	0	0				38	10	0.26			
KCTD8	386617	broad.mit.edu	37	4	44177058	44177058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	KCTD8,caecum,carcinoma,+1,1	KCTD8	NM_198353	exon2	c.C1171A	p.R391S	AGGGGCGATCCAA		107	4	0.04	120	0	0		96	1	0	0				
BMP2K	55589	mdanderson.org	37	4	79792166	79792166	+	Missense_Mutation	SNP	C	C	G	rs200441916	bycluster	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	BMP2K_ENST00000502871,caecum,carcinoma,0,4	BMP2K_ENST00000502871	NM_017593	exon11	c.C1461G	p.H487Q	GCAGCACCACCAC		14	2	0.14	16	0	0		0	4	8	1	0.13			
TRAM1L1	133022	broad.mit.edu	37	4	118006429	118006429	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	TRAM1L1	NM_152402	exon1	c.G121C	p.E41Q	TTCCCTCGAACAC		94	4	0.04	126	0	0		55		8	0	0.00			
BBS7	55212	mdanderson.org	37	4	122770033	122770033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_018190	exon9	c.C900A	p.D300E	ATAGCTGTCTTTT		39	3	0.08	79	0	0				15	0	0.00			
.	152905	bcgsc.ca	37	4	146296708	146296708	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	.	.	.	.	AGCCATCGGCGGC		41	7	0.17	72	0	0				15	0	0.00			
SDHA	6389	bcgsc.ca	37	5	236628	236628	+	Missense_Mutation	SNP	C	C	T	rs201139275	bycluster;byfrequency	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	SDHA	NM_004168	exon10	c.C1346T	p.A449V	ATGGTGCCAACCG		101	9	0.09	150	2	0.0133333333		80		215	0	0.00			
STARD4-AS1	0	broad.mit.edu	37	5	110908045	110908045	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	.	.	.	.	GAAGCCAAAAAAA		9	3	0.33	7	0	0				0	0				
HSPA9	3313	hgsc.bcm.edu;ucsc.edu	37	5	137902698	137902699	+	Missense_Mutation	DNP	TG	TG	GT	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_004134	exon8	c.C870A	p.FK290LQ	CTCTCTTGAACTC		247	29	0.12	228	0	0	0.001			1445	0	0.00			
ZNF346	23567	mdanderson.org	37	5	176449808	176449808	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_012279	exon1	c.G69T	p.S23S	CAGCTCGGAGTTG		21	2	0.10	16	0	0				14	0	0.00			
SQSTM1	8878	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	179250972	179250972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	SQSTM1	NM_003900	exon3	c.G416A	p.R139H	GAACCCGCTACAA		64	5	0.08	59	0	0		30		371	1	0.00			
BTN2A3P	0	broad.mit.edu;mdanderson.org	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	BTN2A3,NS,carcinoma,0,9	.	.	.	.	.	ATGGAACCAGCTG		78	5	0.06	92	1	0.0108695652			9	1	0	0.00			
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	43230837	43230837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_032538	exon13	c.G1735A	p.E579K	CTGCCCGAGGAGG		130	8	0.06	106	0	0				0	0				
FBXL4	26235	broad.mit.edu	37	6	99323347	99323347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	FBXL4	NM_012160	exon8	c.C1646A	p.T549K	ATGTCTGTGTCAC		99	3	0.03	97	0	0		54		27	0	0.00			
SHPRH	257218	broad.mit.edu	37	6	146256416	146256416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	SHPRH	NM_173082	exon12	c.C2731A	p.Q911K	TGACTTGGTCAAT		85	3	0.04	91	0	0		169		17	0	0.00			
GRM1	2911	mdanderson.org	37	6	146755748	146755748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_000838	exon9	c.C3401T	p.A1134V	AGGCGGCCAGCAA		22	2	0.09	55	0	0				0	0				
SP8	221833	mdanderson.org	37	7	20824970	20824970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_182700	exon2	c.G466A	p.G156S	CGCCGCCGCTGCC		57	3	0.05	40	0	0				4	2	0.50			
SP4	6671	broad.mit.edu	37	7	21468306	21468306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	SP4,colon,carcinoma,0,1	SP4	NM_003112	exon2	c.G19A	p.E7K	AAGAAGGAGGAGG		79	3	0.04	66	0	0		91	1	1	0	0.00			
ORAI2	80228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102087325	102087325	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_032831	exon3	c.C591T	p.A197A	GGCCGCCCTGGTG		75	20	0.27	61	0	0				13	5	0.38			
SLC13A4	26266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135406263	135406263	+	Silent	SNP	C	C	T	rs370307347		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_012450	exon2	c.G108A	p.S36S	AGCACACGAGGCC		426	75	0.18	341	0	0				1	0	0.00			
LZTS1	11178	mdanderson.org	37	8	20107717	20107717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_021020	exon3	c.T1307C	p.L436P	CCCTCCAGGTCCT		46	3	0.07	55	0	0				30	0	0.00			
AGPAT6	137964	broad.mit.edu	37	8	41478445	41478445	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	AGPAT6	NM_178819	exon13	c.C1296T	p.D432D	GAAGGACACGTTC		240	5	0.02	218	0	0		32		387	18	0.05	rescued with RNA-seq		
POLB	5423	broad.mit.edu	37	8	42210059	42210059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	POLB	NM_002690	exon6	c.G343T	p.V115L	AAGTTTGTAGATG		110	3	0.03	102	0	0		60		108	0	0.00			
FNTA	2339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	42940420	42940420	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	FNTA,NS,carcinoma,-1,1	FNTA	NM_002027	exon9	c.C1135T	p.Q379X	GTACAGCAATAAC		297	59	0.20	281	0	0		-1	1	387	80	0.21			
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	77761779	77761779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_024721	exon8	c.G3677C	p.S1226T	ACAATAGTAGGGA		102	9	0.09	104	0	0				0	0				
STK3	6788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99608285	99608285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001256312	exon9	c.G881T	p.R294I	GTAGCTCTCTGCT		185	35	0.19	190	0	0				33	2	0.06			
RNF139	11236	mdanderson.org	37	8	125499847	125499847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_007218	exon2	c.G1957T	p.G653C	CACACAGGCGCAG		49	3	0.06	52	0	0				257	0	0.00			
.	0	bcgsc.ca	37	9	40500069	40500069	+	RNA	SNP	A	A	T	rs2774142	by2hit2allele	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	.	.	.	.	AACCCAACTTTTT		118	7	0.06	137	1	0.0072992701				0	0				
COL15A1	1306	broad.mit.edu	37	9	101797339	101797339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	COL15A1	NM_001855	exon18	c.A2123G	p.K708R	GGAAAAAGGGACA		104	4	0.04	106	1	0.0094339623		211		62	0	0.00			
GTF3C4	9329	mdanderson.org	37	9	135553575	135553575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_012204	exon2	c.G569T	p.R190L	ACAATCGCCTGAC		54	3	0.06	61	0	0				53	0	0.00			
NDOR1	27158	mdanderson.org	37	9	140109564	140109564	+	Silent	SNP	G	G	A	rs145912724		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001144026	exon9	c.G1083A	p.P361P	CTTCCCGCACACA		52	3	0.06	56	0	0	0			89	0	0.00			
GPR64	10149	broad.mit.edu	37	X	19026144	19026144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	GPR64	NM_001184834	exon19	c.C1520A	p.A507D	CTGGAAGCTAGCT		268	4	0.01	162	0	0		102		11	0	0.00			
EIF1AX	1964	broad.mit.edu	37	X	20148690	20148690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	EIF1AX	NM_001412	exon6	c.G373T	p.D125Y	CATCATCTCCAGG		462	7	0.02	282	0	0		21		276	4	0.01			
.	139249	bcgsc.ca	37	X	37402545	37402545	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	.	.	.	.	GCTCTGGGCAGAG		32	14	0.44	24	0	0				0	0				
WDR45	11152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	48935722	48935722	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_007075	exon3	c.C33G	p.S11R	ACGCAGGCTGGTC		93	7	0.08	69	0	0				110	2	0.02			
SPIN3	169981	broad.mit.edu	37	X	57020933	57020933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	SPIN3	NM_001010862	exon2	c.A448G	p.M150V	AGACCATCCCCCT		211	7	0.03	94	2	0.0212765957		33		3	0	0.00			
HMGB3	3149	mdanderson.org	37	X	150156378	150156378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_005342	exon5	c.G594T	p.E198D	GGAGGAGGATGAA		19	2	0.11	10	0	0				163	0	0.00			
