Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PLEKHN1	84069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	906518	906518	+	Missense_Mutation	SNP	C	C	T	rs199724483	by1000genomes	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	PLEKHN1,NS,carcinoma,0,1	PLEKHN1	NM_001160184	exon7	c.C674T	p.A225V	GGACGGCGTCAGG		77	5	0.06	76	0	0	0.002	0	1	1	0	0.00			
TP73	7161	ucsc.edu	37	1	3644260	3644260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	TP73	NM_005427	exon8	c.C911T	p.A304V	GAAAAGCTGATGA		34	4	0.12	35	0	0		54		7	0	0.00			
SERINC2	347735	mdanderson.org	37	1	31898760	31898760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001199038	exon6	c.G637T	p.G213C	TACGCAGGTCAGT		41	3	0.07	38	0	0				41	0	0.00			
GJA9	81025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	39340765	39340766	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	GT	GT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	GJA9	NM_030772	exon2	c.1006_1007del	p.336_336del	TACTAAGTGTGGA		142	33	0.23	114	0	0		55		0	0				
PTBP2	58155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97235325	97235325	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_021190	exon4	c.T182A	p.L61H	GTGTACTTCATAT		209	55	0.26	192	0	0				33	15	0.45			
POGZ	23126	broad.mit.edu	37	1	151378739	151378739	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	POGZ_ENST00000491586,NS,carcinoma,0,2	POGZ	NM_015100	exon19	c.G2772A	p.P924P	AGCCTGCGGGTGA		189	4	0.02	186	0	0		211	2	129	1	0.01			
FCRLB	127943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161693309	161693309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	FCRLB,NS,carcinoma,-2,1	FCRLB	NM_001002901	exon3	c.C205T	p.P69S	CTTCTGCCCTCTC		177	33	0.19	201	1	0.0049751244		-2	1	0	0				
FAM208B	54906	mdanderson.org	37	10	5789791	5789791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_017782	exon15	c.G4407T	p.Q1469H	TACCCAGGTACAA		141	5	0.04	167	0	0				49	0	0.00			
DNA2	1763	broad.mit.edu	37	10	70182359	70182359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	DNA2	NM_001080449	exon16	c.C2405A	p.A802D	CCAAGAGCTCTGT		115	4	0.03	111	0	0		76		39	0	0.00			
NPFFR1	64106	mdanderson.org	37	10	72014735	72014735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_022146	exon4	c.C1271A	p.T424N	GGAATGGTGAGGG		15	2	0.13	12	0	0				0	0				
NSMCE4A	54780	mdanderson.org	37	10	123734659	123734659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_017615	exon1	c.C22A	p.R8S	GCCCGCGGCCGCT		10	2	0.20	15	0	0				3	0	0.00			
MUC2	4583	mdanderson.org	37	11	1093437	1093437	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	MUC2_ENST00000441003,NS,carcinoma,0,4	MUC2_ENST00000441003	NM_002457	exon30	c.G5256C	p.T1752T	CACCACGGTGACC		29	4	0.14	41	0	0		0	4	0	0				
RCN1	5954	mdanderson.org	37	11	32112827	32112827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_002901	exon1	c.G85A	p.A29T	CTGCGGGCCAAGC		56	3	0.05	64	0	0				104	0	0.00			
EXT2	2132	bcgsc.ca	37	11	44130752	44130752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	EXT2_ENST00000358681,NS,carcinoma,0,6	EXT2	NM_000401	exon3	c.G644T	p.R215L	GGGATCGAGGTAC		75	5	0.07	76	0	0		129	6	84	0	0.00			
BRMS1	25855	mdanderson.org	37	11	66109598	66109598	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001024957	exon2	c.C108A	p.G36G	CTGGCTGCCGCTC		56	4	0.07	54	0	0				170	0	0.00			
PITPNM1	9600	mdanderson.org	37	11	67259714	67259714	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_004910	exon24	c.C3525T	p.H1175H	ATGCGAGTGCGAG		44	3	0.07	73	0	0				49	0	0.00			
SHANK2	22941	hgsc.bcm.edu;mdanderson.org	37	11	70332654	70332654	+	Nonsense_Mutation	SNP	G	G	T	rs375960981	alternate_allele	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_133266	exon10	c.C1980A	p.Y660X	ATCAATGTAAAGA		96	4	0.04	131	0	0				0	0				
NEU3	10825	mdanderson.org	37	11	74716883	74716883	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_006656	exon3	c.A732G	p.T244T	GGTCACATGGCAC		43	3	0.07	47	0	0				10	0	0.00			
BCO2	83875	mdanderson.org	37	11	112071435	112071435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_031938	exon7	c.G965T	p.G322V	CAGATGGGATAAG		113	5	0.04	159	0	0				0	0				
DDX11	1663	ucsc.edu	37	12	31244689	31244689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	DDX11	NM_030653	exon10	c.G1126A	p.A376T	CATGCGGCCACTC		241	26	0.11	142	5	0.0352112676		188		98	12	0.12			
NOC4L	79050	mdanderson.org	37	12	132631841	132631841	+	Missense_Mutation	SNP	G	G	T	rs375866510	alternate_allele	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_024078	exon4	c.G361T	p.A121S	CTCAGCGCACTCC		54	3	0.06	60	0	0				155	0	0.00			
SLC46A3	283537	mdanderson.org	37	13	29284959	29284959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_181785	exon4	c.C1082A	p.T361N	ACAATAGTGAAAA		53	3	0.06	63	0	0				5	0	0.00			
RFC3	5983	broad.mit.edu	37	13	34398073	34398073	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	RFC3	NM_002915	exon3	c.T245A	p.I82N	AAAAAATTGAAAT		474	10	0.02	525	1	0.0019047619		40		111	0	0.00			
CDH24	64403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23524544	23524544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	CDH24_ENST00000397359,colon,carcinoma,0,2	CDH24_ENST00000397359	NM_022478	exon3	c.C220T	p.R74W	CTCCCCGGTCAAC		92	15	0.16	80	0	0		0	2	20	4	0.20			
LRRC16B	90668	broad.mit.edu	37	14	24534300	24534300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	LRRC16B	NM_138360	exon33	c.T3214G	p.S1072A	CCGGGGTCCCCTA		112	10	0.09	84	5	0.0595238095		120		0	0				
LTB4R	1241	broad.mit.edu	37	14	24785074	24785074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	LTB4R	NM_181657	exon2	c.T217C	p.F73L	GCTCCCTTTTTCC		122	3	0.02	113	1	0.0088495575		18		61	0	0.00			
BMP4	652	mdanderson.org	37	14	54417212	54417212	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_130851	exon4	c.C765T	p.S255S	CGATCGGCTAATC		49	3	0.06	60	0	0				249	0	0.00			
ASB2	51676	broad.mit.edu;mdanderson.org	37	14	94417390	94417390	+	Missense_Mutation	SNP	C	C	T	rs142812400	bycluster	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	ASB2,lower_third,carcinoma,+2,1	ASB2	NM_001202429	exon6	c.G835A	p.A279T	TCTGGGCGGCCAC		173	6	0.03	147	0	0		71	1	12	0	0.00			
C15orf37	283687	mdanderson.org	37	15	80215384	80215384	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	.	.	.	.	GACCTGGCTGGCT		32	3	0.09	27	0	0				5	0	0.00			
KIF7	374654	mdanderson.org	37	15	90176925	90176925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_198525	exon12	c.C2584A	p.R862S	TGACGCGGTGCTG		43	3	0.07	28	0	0				23	0	0.00			
BRICD5	283870	mdanderson.org	37	16	2259985	2259985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_182563	exon4	c.G404A	p.R135Q	GTCTCCCGATCAC		58	5	0.09	42	0	0				16	0	0.00			
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	16225711	16225711	+	Missense_Mutation	SNP	C	C	A	rs45533037	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_004996	exon27	c.C3885A	p.F1295L	GGAATTCCGGAAC		113	11	0.10	106	0	0				91	17	0.19			
LOC653786	0	broad.mit.edu	37	16	22588015	22588015	+	RNA	SNP	A	A	G	rs62045993	bycluster	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	.	.	.	.	CTGAGCACATCGT		57	8	0.14	48	1	0.0208333333				22	2	0.09			
PRSS53	339105	mdanderson.org	37	16	31097783	31097783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	PRSS53,NS,carcinoma,0,1	PRSS53	NM_001039503	exon5	c.C538T	p.R180C	TGAGACGCAGGCG		43	3	0.07	61	0	0		0	1	3	0	0.00			
MYH4	4622	broad.mit.edu	37	17	10368813	10368813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	MYH4	NM_017533	exon5	c.G451T	p.A151S	GTGGGGCCTCCTG		190	7	0.04	118	1	0.0084745763		349		0	0				
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		307	19	0.06	292	13	0.0445205479				78	42	0.54			
MYO15A	51168	broad.mit.edu	37	17	18025400	18025400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	MYO15A	NM_016239	exon2	c.G3286T	p.A1096S	ATCAGGGCCCCAG		94	10	0.11	75	2	0.0266666667		268		0	0				
HEXIM1	0	broad.mit.edu	37	17	43229647	43229648	+	RNA	INS	-	-	A	rs141039553	bycluster;by1000genomes	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	HEXIM1	.	.	.	.	TTTATTTTTTTTT		8	4	0.50	4	0	0		25		0	0				
SDK2	54549	broad.mit.edu	37	17	71503707	71503707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	SDK2	NM_001144952	exon2	c.C94A	p.P32T	GCACAGGCTCTGT		100	4	0.04	99	1	0.0101010101		219		2	0	0.00			
DLGAP1	9229	mdanderson.org	37	18	3879777	3879777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001242761	exon4	c.C292A	p.R98S	GGATGCGGTTCGC		24	2	0.08	29	0	0				2	0	0.00			
POLRMT	5442	mdanderson.org	37	19	619054	619054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_005035	exon15	c.G3210T	p.W1070C	TGTGACCCACTCC		94	5	0.05	69	1	0.0144927536				211	0	0.00			
LINGO3	645191	mdanderson.org	37	19	2290612	2290612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001101391	exon2	c.C1164A	p.D388E	CAGCGCGTCGCCG		23	2	0.09	29	0	0				3	0	0.00			
LMNB2	84823	mdanderson.org	37	19	2434504	2434504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_032737	exon7	c.G991A	p.A331T	CTTCAGCGGCACT		47	3	0.06	78	1	0.0128205128				308	0	0.00			
EEF2	1938	mdanderson.org	37	19	3976653	3976653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001961	exon15	c.G2476A	p.D826N	TGTTGTCGAAGGG		36	3	0.08	28	0	0				8078	10	0.00			
LPHN1	22859	broad.mit.edu	37	19	14261858	14261858	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	LPHN1,NS,carcinoma,0,1	LPHN1	NM_001008701	exon24	c.G4252C	p.G1418R	GGGGGCCGGGGGG		40	5	0.13	48	1	0.0208333333		107	1	35	0	0.00			
RPL18A	6142	mdanderson.org	37	19	17972941	17972941	+	Silent	SNP	G	G	A	rs78185444	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_000980	exon3	c.G237A	p.G79G	CTTCGGGATCTGG		50	3	0.06	46	0	0	0.004			7497	1	0.00			
KLHL26	55295	mdanderson.org	37	19	18779075	18779075	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_018316	exon3	c.C868T	p.L290L	CAGGTGCTGCCCT		37	3	0.08	40	0	0				6	0	0.00			
MOGS	7841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74691780	74691780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_006302	exon2	c.A422G	p.D141G	ACACCGTCCCCCT		142	6	0.04	145	0	0				113	0	0.00			
CCDC142	84865	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74709738	74709738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_032779	exon1	c.G227A	p.R76Q	GGCCCCCGCCTCC		54	12	0.22	54	0	0				3	1	0.33			
ANKRD30BL	554226	mdanderson.org	37	2	132919099	132919099	+	RNA	SNP	C	C	T	rs199974298	bycluster	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	.	.	.	.	TGTCGTCTTCTTC		81	8	0.10	66	2	0.0303030303	0.009			0	0				
C2orf57	165100	mdanderson.org	37	2	232457786	232457786	+	Missense_Mutation	SNP	G	G	A	rs369074059		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_152614	exon1	c.G124A	p.A42T	TCTGTCGCATCCA		110	5	0.05	86	0	0				0	0				
AQP12B	653437	mdanderson.org	37	2	241621835	241621835	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001102467	exon1	c.G420T	p.L140L	CAGGTGCAGGTCA		47	3	0.06	37	0	0				0	0				
MYH7B	57644	mdanderson.org	37	20	33585097	33585097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_020884	exon32	c.C3527T	p.A1176V	AGCGGGCAGCCCG		35	3	0.09	43	0	0				14	0	0.00			
SLC9A8	23315	broad.mit.edu	37	20	48479536	48479536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	SLC9A8	NM_001260491	exon9	c.G832T	p.D278Y	GCCCTTGACTACT		171	5	0.03	129	0	0		63		12	0	0.00			
RBBP8NL	140893	mdanderson.org	37	20	60987688	60987688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_080833	exon13	c.G1868A	p.G623E	TTGTCCCCAGGCT		37	3	0.08	42	0	0				0	0				
IFNAR1	3454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34715721	34715721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_000629	exon4	c.G524A	p.G175D	CTTCAGGTGTAGA		108	29	0.27	92	0	0				75	16	0.21			
OSBP2	23762	mdanderson.org	37	22	31266595	31266595	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_030758	exon3	c.G1033T	p.E345X	CCATCTGAGAGTG		72	4	0.06	59	0	0				2	0	0.00			
SFI1	9814	mdanderson.org	37	22	32009152	32009152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001007467	exon25	c.C2515T	p.R839W	GAGCAGCGGGCGA		33	3	0.09	28	0	0				29	0	0.00			
HCLS1	3059	broad.mit.edu	37	3	121366225	121366225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	HCLS1	NM_005335	exon4	c.C229A	p.P77T	CTTTGGGCCCTGA		253	5	0.02	259	0	0		78		112	0	0.00			
IGSF10	285313	mdanderson.org	37	3	151164540	151164540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_178822	exon4	c.G3229A	p.A1077T	ATGCTGCTGTGGC		51	3	0.06	50	0	0				1	0	0.00			
CHRD	8646	broad.mit.edu	37	3	184101396	184101396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	CHRD	NM_003741	exon12	c.G1406T	p.C469F	TCCTGTGCCACAT		119	6	0.05	132	1	0.0075757576		149		9	0	0.00			
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	125599937	125599937	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_020337	exon3	c.G636A	p.G212G	AACAGTCCCAGAT		148	36	0.24	151	0	0				11	4	0.36			
ACSL1	2180	broad.mit.edu	37	4	185701510	185701510	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	ACSL1	NM_001995	exon5	c.C453A	p.G151G	AAAGATGCCAATG		100	5	0.05	95	0	0		77		20	0	0.00			
TRIO	7204	mdanderson.org	37	5	14488050	14488050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_007118	exon48	c.G7313T	p.R2438L	ACGCGCGCGCTAG		27	2	0.07	34	0	0				12	0	0.00			
IPO11	51194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	61772516	61772516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001134779	exon9	c.G884A	p.S295N	GTAGAAGTATAGG		552	180	0.33	712	0	0				26	8	0.31			
PCDH12	51294	broad.mit.edu	37	5	141335641	141335641	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	PCDH12	NM_016580	exon1	c.C1776A	p.I592I	AGTCTCGATGGGC		66	3	0.05	64	0	0		133		13	0	0.00			
DEK	7913	mdanderson.org	37	6	18258233	18258233	+	Missense_Mutation	SNP	G	G	T	rs200796384	bycluster;alternate_allele	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	DEK,caecum,carcinoma,+1,1	DEK	NM_003472	exon4	c.C308A	p.T103N	TCATCGGTTTTCT		83	4	0.05	95	1	0.0105263158		1	1	296	2	0.01			
NFKBIL1	4795	broad.mit.edu;mdanderson.org	37	6	31526067	31526067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	NFKBIL1	NM_005007	exon4	c.G825T	p.K275N	ACCCAAGCCAACC		59	4	0.07	63	0	0		17		133	0	0.00			
RNU6-71	100873774	hgsc.bcm.edu	37	6	56141616	56141616	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	.	.	.	.	TTTTGTTTTTTTT		51	5	0.10	59	0	0				0	0				
RIMS1	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72892035	72892035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	RIMS1	NM_014989	exon6	c.G861T	p.K287N	CCTGAAGAGCGAG		302	31	0.10	370	1	0.0027027027		278		0	0				
AKD1	221264	broad.mit.edu	37	6	109867322	109867322	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	AKD1	NM_001145128	exon26	c.A2973C	p.P991P	TCTTAATGGAGGA		83	7	0.08	107	5	0.046728972		223		0	0				
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	159653823	159653823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	FNDC1,colon,carcinoma,0,3	FNDC1	NM_032532	exon11	c.G2279A	p.R760Q	CATCACGGTCCAC		56	7	0.13	75	0	0		0	3	15	1	0.07			
DLL1	28514	mdanderson.org	37	6	170593060	170593060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_005618	exon9	c.C1307T	p.S436L	CTCCCCGAGAAGC		15	2	0.13	24	1	0.0416666667				9	0	0.00			
GPR146	115330	mdanderson.org	37	7	1097335	1097335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_138445	exon1	c.C184T	p.P62S	ACCATGCCGGACG		43	3	0.07	35	0	0				3	0	0.00			
HOXA13	3209	mdanderson.org	37	7	27238794	27238794	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_000522	exon1	c.C903A	p.L301L	CTTCCAGAGGTGG		37	3	0.08	28	0	0				21	0	0.00			
ZAN	7455	broad.mit.edu	37	7	100349991	100349991	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	ZAN_ENST00000542585,NS,carcinoma,0,5	ZAN	.	.	.	.	ACCATCTCCCCAG		124	12	0.10	100	3	0.03		658	5	1	0	0.00			
ADAM32	203102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39079164	39079164	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_145004	exon13	c.T1269G	p.T423T	TCGAACTTGTGTA		125	35	0.28	67	0	0				0	0				
FRMPD1	22844	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37746248	37746248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	FRMPD1	NM_014907	exon16	c.G4219A	p.A1407T	TCCAGGGCACTGA		44	5	0.11	32	0	0		237		0	0				
SECISBP2	79048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	91940430	91940430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	SECISBP2,NS,carcinoma,0,1	SECISBP2	NM_024077	exon3	c.G271A	p.A91T	CCATATGCCTATT		163	54	0.33	178	0	0		0	1	23	9	0.39			
PHF2	5253	mdanderson.org	37	9	96422835	96422835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_005392	exon12	c.A1691G	p.K564R	CCAAGAAGGGCAA		20	2	0.10	37	0	0				19	0	0.00			
GALNT12	79695	mdanderson.org	37	9	101589071	101589071	+	Silent	SNP	A	A	G	rs146370762	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_024642	exon3	c.A579G	p.G193G	TTCGGGACTGCCC		42	3	0.07	69	0	0	0.005			7	0	0.00			
WDR5	11091	mdanderson.org	37	9	137007545	137007545	+	Splice_Site	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_017588	exon6	c.444+1G>A	.	GGATCCGTAAGTG		53	3	0.06	63	0	0				0	0				
INPP5E	56623	mdanderson.org	37	9	139327038	139327038	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_019892	exon6	c.C1280A	p.S427X	TCACCTGCTGTGG		28	3	0.11	44	0	0				25	0	0.00			
XG	7499	broad.mit.edu	37	X	2700164	2700164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	XG	NM_001141920	exon4	c.G185A	p.G62D	ACAGCGGTGGAAG		134	6	0.04	141	0	0		22		2	0	0.00			
RPGR	6103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	38146264	38146264	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001034853	exon15	c.G1988C	p.S663T	CCTGAACTACCTT		139	51	0.37	134	0	0				0	0				
ZNF541	84215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	48024612	48024612	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	ZNF541,NS,carcinoma,+1,1	ZNF541	.	.	.	.	CATTTCGACTCTT		83	23	0.28	110	0	0		1	1	5	3	0.60			
