Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
KAZN	23254	hgsc.bcm.edu	37	1	15392249	15392249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	RP1-21O18_1,NS,carcinoma,-1,1	RP1-21O18_1	NM_015209	exon8	c.G1222T	p.G408C	TTTGATGGTACCG		97	4	0.04	75	0	0		-1	1	24	0	0.00			
MAP3K6	9064	mdanderson.org	37	1	27684931	27684931	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_004672	exon20	c.C2755A	p.R919R	CATGTCGTGGGGA		41	3	0.07	38	0	0				18	0	0.00			
SERINC2	347735	broad.mit.edu	37	1	31897662	31897662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	SERINC2	NM_001199038	exon4	c.A361C	p.T121P	TTTTTCACCCTGC		97	21	0.22	112	19	0.1696428571		44		18	1	0.06			
KCNA10	3744	broad.mit.edu	37	1	111060761	111060761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	KCNA10	NM_005549	exon1	c.G649A	p.A217T	CCACAGCACGGGC		189	4	0.02	155	0	0		92		0	0				
PDIA3P	0	broad.mit.edu	37	1	146651215	146651215	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	.	.	.	.	CAGTAGGCAAACA		32	3	0.09	24	0	0				29	2	0.07			
FAM129A	116496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	184767257	184767257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_052966	exon13	c.A1622T	p.Y541F	TCCTCATAGACAT		54	17	0.31	64	0	0				3	0	0.00			
SKIDA1	387640	broad.mit.edu;bcgsc.ca	37	10	21805720	21805720	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_207371	exon4	c.T1032C	p.H344H	GTGGTGATGGTGG		26	4	0.15	23	0	0				2	0	0.00			
SKIDA1	387640	mdanderson.org	37	10	21806056	21806056	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_207371	exon4	c.C696T	p.A232A	AGCAGCGGCGGCG		13	2	0.15	18	0	0				0	0				
GAD2	2572	mdanderson.org	37	10	26581439	26581439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_000818	exon14	c.G1432T	p.A478S	GAGTTGGCAGAGT		50	3	0.06	86	0	0				10	0	0.00			
LRIT2	340745	mdanderson.org	37	10	85985212	85985212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001017924	exon1	c.C65A	p.P22H	CAGAAAGGCTGAG		54	3	0.06	61	0	0				0	0				
SLIT1	6585	mdanderson.org	37	10	98778349	98778349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_003061	exon28	c.C2963A	p.P988Q	GTGAACGGGGCAT		50	3	0.06	69	0	0				0	0				
DUSP8	1850	mdanderson.org	37	11	1579110	1579110	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_004420	exon6	c.C735T	p.H245H	CAGACAGTGGACG		43	3	0.07	50	0	0				37	0	0.00			
GTF2H1	2965	mdanderson.org	37	11	18354649	18354649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001142307	exon3	c.C28A	p.L10M	GTTTTGCTGATTG		19	2	0.11	41	0	0				10	0	0.00			
NAV2	89797	bcgsc.ca	37	11	20005718	20005718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	NAV2,colon,carcinoma,+1,1	NAV2	NM_001244963	exon12	c.G2762T	p.R921L	TGAACCGGCTCCC		59	5	0.08	58	1	0.0172413793		255	1	1	0	0.00			
SLC1A2	6506	broad.mit.edu	37	11	35308373	35308373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	SLC1A2	NM_004171	exon8	c.C1217A	p.A406E	GCTACCGCTTCAT		124	3	0.02	141	0	0		54		2	0	0.00			
PTGDR2	11251	broad.mit.edu	37	11	60620376	60620376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_004778	exon2	c.G820A	p.A274T	GGTTTGCGTGCGC		55	5	0.09	43	1	0.023255814				0	0				
SLC22A12	116085	mdanderson.org	37	11	64367948	64367948	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001276326	exon8	c.1292+1G>T	.	GCTCAGGTGAGGC		40	3	0.08	32	0	0				0	0				
.	0	broad.mit.edu	37	11	96486607	96486607	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	.	.	.	.	TGGCTCTCCCAGT		6	2	0.33	9	0	0				0	0				
DDX10	1662	mdanderson.org	37	11	108594024	108594024	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_004398	exon13	c.A1800G	p.K600K	AGCAAAAGGATCT		44	3	0.07	52	0	0				84	0	0.00			
DCP1B	196513	mdanderson.org	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	DCP1B,bladder,carcinoma,0,13	DCP1B	NM_152640	exon7	c.G756C	p.Q252H	CTGCTGCTGGTGG		51	3	0.06	10	0	0		0	13	68	0	0.00			
FGD4	121512	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	32734925	32734925	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_139241	exon4	c.G124T	p.E42X	AAGAAAGAGTCTG		260	11	0.04	108	0	0				46	0	0.00			
TMEM117	84216	mdanderson.org	37	12	44537344	44537344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_032256	exon4	c.G427T	p.D143Y	ATTACAGACTATA		43	3	0.07	42	0	0				4	0	0.00			
NCOR2	9612	hgsc.bcm.edu;mdanderson.org	37	12	124887102	124887102	+	Silent	SNP	C	C	T	rs7488825	bycluster;alternate_allele	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_006312	exon16	c.G1488A	p.Q496Q	TTGTTGCTGCTGC		66	7	0.11	43	0	0				21	2	0.10			
EBPL	84650	broad.mit.edu	37	13	50235138	50235138	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	EBPL,NS,carcinoma,0,2	EBPL	NM_032565	exon4	c.A587C	p.Q196P	TCTTTCTGATGCA		120	4	0.03	104	0	0		44	2	509	0	0.00			
EBPL	84650	broad.mit.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	EBPL,NS,carcinoma,0,9	EBPL	NM_032565	exon4	c.C565G	p.L189V	GTTCTAGCCATGA		120	4	0.03	105	0	0		44	9	570	1	0.00			
IRS2	8660	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	110435838	110435838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	IRS2	NM_003749	exon1	c.G2563A	p.G855R	CGGCCCCGAAGGC		25	12	0.48	24	0	0		44		0	0				
MCF2L	23263	mdanderson.org	37	13	113742028	113742028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001112732	exon23	c.C2603T	p.A868V	TGGCTGCCGTTGG		32	3	0.09	78	0	0				4	0	0.00			
PRKCH	5583	mdanderson.org	37	14	62016436	62016436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	PRKCH,NS,carcinoma,0,1	PRKCH	NM_006255	exon14	c.G1939T	p.D647Y	GACCCTGACTTCA		48	3	0.06	44	0	0		0	1	25	0	0.00			
ADAM21P1	0	broad.mit.edu	37	14	70713742	70713742	+	RNA	SNP	G	G	T	rs78990308		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	.	.	.	.	AACAACGAGCTCC		110	11	0.10	106	1	0.0094339623				0	0				
VPS18	57617	mdanderson.org	37	15	41191492	41191492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_020857	exon4	c.C476A	p.P159H	CAGGCCCCATCCT		30	3	0.10	38	0	0				19	0	0.00			
EPB42	2038	mdanderson.org	37	15	43500507	43500507	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_000119	exon8	c.C1086T	p.C362C	CATCCAGCACTCT		41	3	0.07	74	0	0				0	0				
PLEKHO2	80301	mdanderson.org	37	15	65157590	65157590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_025201	exon6	c.G976T	p.G326C	TCCATGGGTGAGA		47	3	0.06	58	0	0				22	0	0.00			
CLCN7	1186	broad.mit.edu;mdanderson.org	37	16	1505139	1505139	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	CLCN7	NM_001287	exon12	c.C1094A	p.S365X	ACCTCCGAGTCAA		89	5	0.06	89	0	0		53		33	0	0.00			
VAT1L	57687	mdanderson.org	37	16	77822666	77822666	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_020927	exon1	c.C87T	p.G29G	CGGCGGCGGCGAC		21	2	0.10	31	0	0				0	0				
SLC7A5	8140	mdanderson.org	37	16	87870225	87870225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_003486	exon8	c.C1169A	p.S390Y	TCCTTGGAGAAGG		15	3	0.20	26	0	0				71	0	0.00			
VPS9D1	9605	broad.mit.edu;mdanderson.org	37	16	89782892	89782892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_004913	exon4	c.G409A	p.A137T	ACTCTGCCCCCTG		68	4	0.06	98	0	0				30	0	0.00			
DERL2	51009	broad.mit.edu	37	17	5383846	5383846	+	Silent	SNP	G	G	T	rs143440894	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	DERL2	NM_016041	exon5	c.C384A	p.L128L	ATAGACGAGCATT		436	6	0.01	373	0	0		15		230	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		211	15	0.07	167	6	0.0359281437				40	22	0.55			
.	0	broad.mit.edu	37	17	16722514	16722514	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	.	.	.	.	GTGAGTGTGGCCA		131	11	0.08	118	0	0				0	0				
RBFOX3	146713	broad.mit.edu	37	17	77111769	77111772	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	TACT	TACT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	RBFOX3	NM_001082575	exon5	c.26_29del	p.9_10del	GGGGGGTACTGGG		6	2	0.33	9	0	0		10		0	0				
LAMA1	284217	mdanderson.org	37	18	6950970	6950970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_005559	exon58	c.G8208T	p.K2736N	CGAGAGCCTGGGG		20	2	0.10	47	0	0				64	0	0.00			
CIDEA	1149	mdanderson.org	37	18	12254390	12254390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001279	exon1	c.C8A	p.A3D	TGGAGGCCGCCCG		19	3	0.16	26	0	0				1	0	0.00			
ATP4A	495	mdanderson.org	37	19	36050969	36050969	+	Missense_Mutation	SNP	A	A	T	rs2733743	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_000704	exon7	c.T794A	p.V265E	CCCTGCACGGTGC		47	2	0.04	51	0	0				0	0				
WDR62	284403	mdanderson.org	37	19	36577593	36577593	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001083961	exon13	c.G1647T	p.L549L	AGGGCTGACCTTG		49	3	0.06	48	0	0				12	0	0.00			
FCGBP	8857	broad.mit.edu	37	19	40392050	40392050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	FCGBP	NM_003890	exon17	c.C8336T	p.A2779V	ACGCAGGCTTGGC		265	4	0.02	284	0	0		416		21	0	0.00			
ETHE1	23474	mdanderson.org	37	19	44011048	44011048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	ETHE1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	ETHE1	NM_014297	exon7	c.C719T	p.A240V	GGAACAGCAAAGT		33	3	0.09	30	0	0		0	1	282	0	0.00			
RTN2	6253	broad.mit.edu;mdanderson.org	37	19	45992653	45992653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	RTN2,caecum,carcinoma,+1,2	RTN2	NM_005619	exon6	c.C1192T	p.R398C	CTTTGCGGTAAAC		51	3	0.06	46	1	0.0217391304		45	2	56	0	0.00			
NT5C1B	93034	broad.mit.edu	37	2	18765888	18765888	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	NT5C1B	NM_001199087	exon5	c.C846G	p.S282S	CTGCTCGGACAGA		57	3	0.05	54	1	0.0185185185		72		0	0				
APOB	338	mdanderson.org	37	2	21256356	21256356	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_000384	exon9	c.C939A	p.T313T	GGATTTGGTGCTC		51	3	0.06	47	0	0				0	0				
EML6	400954	mdanderson.org	37	2	55194165	55194165	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001039753	exon38	c.G5523A	p.V1841V	CCAGGTGCATGAG		67	4	0.06	84	0	0				4	0	0.00			
.	0	bcgsc.ca	37	2	58688601	58688601	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	.	.	.	.	CAGCTCGTACCTT		92	5	0.05	74	0	0				116	1	0.01			
C2orf74	339804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61389989	61389989	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001143959	exon2	c.G129A	p.R43R	AGGCAGGAAAGGT		127	36	0.28	157	0	0				28	3	0.11			
SMYD5	10322	ucsc.edu	37	2	73453042	73453042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	SMYD5	NM_006062	exon13	c.G1225T	p.A409S	GAAGATGCAGAGC		39	4	0.10	28	0	0		58		53	0	0.00			
ANKRD36BP2	0	broad.mit.edu	37	2	89104503	89104504	+	RNA	INS	-	-	C	rs149625899	bycluster;by1000genomes	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	.	.	.	.	ATTTTTTTCAGAT		15	9	0.60	5	0	0				0	0				
.	55041	broad.mit.edu;mdanderson.org	37	2	132110862	132110862	+	Silent	SNP	G	G	C	rs370398581		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	.	.	.	.	CGCTCCGGCTCTC		37	9	0.24	42	1	0.0238095238				0	0				
LOC150776	0	bcgsc.ca	37	2	132258144	132258144	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	.	.	.	.	CTGTCTCCTACCT		104	8	0.08	102	0	0				5	0	0.00			
RRBP1	6238	bcgsc.ca	37	20	17639867	17639867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	RRBP1	.	.	.	.	TTCTTGCCCTGGT		192	12	0.06	167	2	0.0119760479		157		775	46	0.06			
SCAND1	51282	mdanderson.org	37	20	34542028	34542028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_033630	exon2	c.C368T	p.A123V	GGGATGGCTTCAG		44	3	0.07	38	0	0				290	0	0.00			
MYT1	4661	broad.mit.edu	37	20	62848481	62848482	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	MYT1	NM_004535	exon11	c.1693_1694insC	p.A565fs	AACGTGGCCCCCG		104	6	0.06	75	0	0		152		0	0				
TRAPPC10	7109	broad.mit.edu;mdanderson.org	37	21	45507655	45507655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	TRAPPC10	NM_003274	exon17	c.C2615T	p.A872V	CGCCTGCGTACCA		77	4	0.05	51	0	0		109		22	0	0.00			
ADORA2A	135	bcgsc.ca	37	22	24837218	24837218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	ADORA2A	NM_000675	exon3	c.G1000T	p.V334F	GAGCAGGTCAGCC		44	4	0.09	43	0	0		44		66	0	0.00			
.	0	broad.mit.edu	37	22	34492089	34492090	+	RNA	INS	-	-	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	.	.	.	.	CTTGCTGTTTTTT		7	3	0.43	13	0	0				0	0				
MYH9	4627	mdanderson.org	37	22	36745272	36745272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_002473	exon2	c.C10A	p.Q4K	CAGCTTGCTGTGC		37	3	0.08	50	0	0				34	0	0.00			
PIM3	415116	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	50355011	50355011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001001852	exon3	c.A241G	p.S81G	TGGGGCAGCCTGG		116	20	0.17	115	0	0				12	5	0.42			
RAF1	5894	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12641718	12641718	+	Missense_Mutation	SNP	G	G	A	rs5746220	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_002880	exon9	c.C923T	p.P308L	GTTTTCGGCTGTG		143	36	0.25	114	0	0	0.009			142	39	0.27			
IP6K2	51447	mdanderson.org	37	3	48727074	48727074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_016291	exon5	c.G677A	p.R226Q	TGTTGTCGTGTGC		74	4	0.05	63	0	0				386	0	0.00			
PCDH10	57575	hgsc.bcm.edu;mdanderson.org	37	4	134072954	134072954	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	PCDH10,NS,carcinoma,+2,1	PCDH10	NM_032961	exon1	c.G1659T	p.A553A	CCAGGCGCTGGCT		46	3	0.07	80	0	0		2	1	5	0	0.00			
TMEM144	55314	mdanderson.org	37	4	159161570	159161570	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_018342	exon10	c.G802T	p.G268X	CTACCAGGTAAGA		55	3	0.05	67	0	0				5	0	0.00			
NEK1	4750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	170345935	170345935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001199397	exon31	c.T2991G	p.D997E	CTGAGAATCATTG		93	9	0.10	86	0	0				6	1	0.17			
C5orf60	285679	mdanderson.org	37	5	179069468	179069468	+	Missense_Mutation	SNP	A	A	T	rs62405726	bycluster;byfrequency;alternate_allele	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	C5orf60,caecum,carcinoma,+1,1	C5orf60	NM_001142306	exon5	c.T706A	p.W236R	GCCTCCACCTGCC		54	3	0.06	60	0	0		1	1	0	0				
HLA-A	3105	hgsc.bcm.edu	37	6	29911272	29911272	+	Missense_Mutation	SNP	T	T	A	rs76185201	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	HLA-A,colon,carcinoma,0,1	HLA-A	NM_001242758	exon3	c.T571A	p.W191R	GTGGAGTGGCTCC		90	6	0.07	67	1	0.0149253731	0.001	0	1	1252	0	0.00			
TMEM30A	55754	mdanderson.org	37	6	75994279	75994279	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001143958	exon1	c.C76A	p.R26R	GTCTCCGAGTCTT		42	3	0.07	34	0	0				13	0	0.00			
SF3B5	83443	ucsc.edu	37	6	144416537	144416537	+	Missense_Mutation	SNP	A	A	C	rs199548273	bycluster;byfrequency	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	SF3B5	NM_031287	exon1	c.T98G	p.V33G	TGGTTCACCAGCC		94	21	0.22	96	18	0.1875		6		652	107	0.16			
AKAP12	9590	mdanderson.org	37	6	151673962	151673962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_005100	exon4	c.G4436T	p.C1479F	CCGACTGTCAGGC		29	3	0.10	31	0	0				143	0	0.00			
UNC93A	54346	ucsc.edu	37	6	167728900	167728901	+	Missense_Mutation	DNP	TC	TC	CG	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	TC	TC					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	UNC93A,ear,carcinoma,+1,2	UNC93A	NM_018974	exon8	c.C1335G	p.V445A	GACAGGTCAACCA		43	5	0.12	69	8	0.115942029		66	2	3	0	0.00			
NACAD	23148	broad.mit.edu	37	7	45123805	45123805	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	NACAD	NM_001146334	exon2	c.G1974A	p.K658K	CACAGGCTTTGGG		8	4	0.50	12	0	0		44		20	3	0.15			
CDK14	5218	mdanderson.org	37	7	90741978	90741978	+	Silent	SNP	C	C	T	rs200612683	by1000genomes;alternate_allele	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_012395	exon12	c.C1222T	p.L408L	CCACGGCTATGGG		38	3	0.08	49	0	0				11	0	0.00			
TRIP6	7205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	100466178	100466178	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_003302	exon4	c.C425A	p.S142X	CAGCCTCGCCGCT		65	19	0.29	54	0	0				184	12	0.07			
RELN	5649	mdanderson.org	37	7	103191524	103191524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_005045	exon41	c.C6292A	p.H2098N	AAAGGTGCAGCTT		37	3	0.08	40	0	0				0	0				
PUS7	54517	ucsc.edu	37	7	105098245	105098245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	PUS7	NM_019042	exon16	c.C1978T	p.L660F	AGCGAAGCCAGGT		73	1	0.01	78	0	0		59		31	4	0.13			
MLL3	58508	bcgsc.ca;mdanderson.org	37	7	151962128	151962128	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	MLL3	NM_170606	exon8	c.C1179T	p.N393N	CTTGCAGTTCTGG		103	7	0.07	103	2	0.0194174757		1564		3	0	0.00			
CSMD1	64478	hgsc.bcm.edu	37	8	3226879	3226879	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_033225	exon19	c.C2796A	p.G932G	GATGTAGCCTCCA		106	5	0.05	75	0	0				0	0				
EYA1	2138	mdanderson.org	37	8	72111599	72111599	+	Missense_Mutation	SNP	A	A	T	rs10103397	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_000503	exon18	c.T1755A	p.H585Q	CAAGGCATGGTGC		51	3	0.06	25	0	0				4	0	0.00			
COL22A1	169044	mdanderson.org	37	8	139712365	139712365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_152888	exon32	c.C2582A	p.P861Q	ATCCGTGGATGTG		13	2	0.15	32	0	0				3	0	0.00			
PYCRL	65263	mdanderson.org	37	8	144687882	144687882	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_023078	exon6	c.C849A	p.L283L	TCTGCTGAGCTCC		42	3	0.07	41	0	0				17	0	0.00			
ADCK5	203054	mdanderson.org	37	8	145617338	145617338	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_174922	exon11	c.G1143T	p.L381L	GCTGCTGGACCAC		46	3	0.07	37	0	0				26	0	0.00			
.	0	bcgsc.ca	37	9	90805040	90805040	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	.	.	.	.	GTGATCCTCAGTA		27	4	0.15	28	0	0				0	0				
DAB2IP	153090	mdanderson.org	37	9	124535377	124535377	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_032552	exon12	c.T2486A	p.L829Q	GCTCCCTGAGCTC		30	3	0.10	39	0	0				12	0	0.00			
CEL	1056	hgsc.bcm.edu	37	9	135947115	135947116	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	CA	CA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001807	exon11	c.A2236G	p.K746E	TGACTCCAAGGAA		73	11	0.15	53	0	0				8	0	0.00			
DBH	1621	mdanderson.org	37	9	136501645	136501645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_000787	exon1	c.T152C	p.I51T	ATCACATCCCCCT		47	4	0.09	42	0	0				0	0				
IRAK1	3654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153278098	153278098	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001569	exon13	c.G1962C	p.S654S	CTCTGACGACGAT		89	23	0.26	74	0	0				122	27	0.22			
PLCD3	113026	mdanderson.org	37	17	43195379	43195379	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	.	.	.	.	GTCGCGCACGGCT		45	3	0.07	48	0	0				46	0	0.00			
