Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
YRDC	79693	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	38270037	38270037	+	Missense_Mutation	SNP	C	C	T	rs138070077		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	YRDC,NS,carcinoma,0,1	YRDC	NM_024640	exon4	c.G704A	p.R235H	CCAAGGCGACACT		156	13	0.08	153	0	0	0	0	1	75	4	0.05			
ACOT11	26027	mdanderson.org	37	1	55070882	55070882	+	Missense_Mutation	SNP	G	G	T	rs143707794	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_015547	exon13	c.G1370T	p.R457L	ACTACCGGTGAGG		49	3	0.06	45	0	0				37	0	0.00			
LRRC8B	23507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	90048812	90048812	+	Silent	SNP	C	C	T	rs116502828	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_015350	exon5	c.C603T	p.S201S	AGATTCCGGCAAA		70	5	0.07	79	0	0	0.003			2	0	0.00			
GFI1	2672	mdanderson.org	37	1	92948551	92948551	+	Silent	SNP	G	G	T	rs143913803	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001127215	exon3	c.C168A	p.S56S	TTCGGGGGACAAA		17	2	0.12	26	0	0				2	0	0.00			
.	728841	broad.mit.edu	37	1	144220816	144220816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	ENSG00000162825,bladder,carcinoma,0,2	.	.	.	.	.	AGAAAGAGCCTGA		72	3	0.04	83	0	0			2	1	0	0.00			
NBPF14	25832	broad.mit.edu	37	1	148009435	148009435	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	NBPF14	NM_015383	exon16	c.T1872A	p.G624G	AAGACAACCTGAA		355	7	0.02	516	0	0		107		51	1	0.02			
KCNJ10	3766	mdanderson.org	37	1	160011301	160011301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_002241	exon2	c.G1022A	p.G341D	CGGAGGCCACTAG		118	5	0.04	105	0	0				0	0				
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207787775	207787775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000651	exon40	c.G6602A	p.S2201N	CTGCTAGTCATTG		100	31	0.31	101	0	0				2	0	0.00			
CDC42BPA	8476	broad.mit.edu	37	1	227441766	227441766	+	Splice_Site	SNP	T	T	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	CDC42BPA	NM_003607	exon2	c.A269G	p.E90G	CTTACCTCCCCAA		166	5	0.03	163	0	0		528		2	0	0.00			
TRIM67	440730	mdanderson.org	37	1	231298836	231298836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	TRIM67_ENST00000366653,colon,carcinoma,0,2	TRIM67_ENST00000366653	NM_001004342	exon1	c.G121A	p.G41S	CCGGACGGTGAGC		46	3	0.07	36	0	0		0	2	0	0				
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240071655	240071655	+	Missense_Mutation	SNP	C	C	T	rs200967479		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	CHRM3,colon,carcinoma,0,1	CHRM3	NM_000740	exon5	c.C904T	p.R302C	ATGAAACGCTCCA		134	27	0.20	136	0	0		0	1	17	2	0.12			
ANKRD16	54522	mdanderson.org	37	10	5920171	5920171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001009941	exon7	c.C1008A	p.D336E	CGTGATGTCTTCA		24	3	0.13	52	0	0				26	0	0.00			
POLR3A	11128	mdanderson.org	37	10	79742493	79742493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_007055	exon27	c.C3512A	p.A1171D	ACCACAGCCTCAC		58	4	0.07	81	0	0				32	0	0.00			
TRIM5	85363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	5699638	5699638	+	Silent	SNP	G	G	A	rs182373551	bycluster;by1000genomes	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	TRIM5_ENST00000380034,extremity,malignant_melanoma,-1,2	TRIM5_ENST00000380034	NM_033093	exon4	c.C540T	p.N180N	CAAGACGTTGGTT		131	8	0.06	178	0	0	0	-1	2	11	0	0.00			
TRIM51	84767	broad.mit.edu	37	11	55657490	55657490	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_032681	exon6	c.G834T	p.L278L	TGGACTGCTGGAC		48	3	0.06	50	0	0				0	0				
PATL1	219988	mdanderson.org	37	11	59425075	59425075	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_152716	exon5	c.C549T	p.G183G	AGGACTGCCAATG		33	3	0.09	46	0	0				26	0	0.00			
EHBP1L1	254102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65350457	65350457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001099409	exon9	c.G2314A	p.A772T	GAAGGTGCGATAT		80	17	0.21	88	0	0				43	8	0.19			
CEP57	9702	mdanderson.org	37	11	95562419	95562419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_014679	exon10	c.G1196T	p.C399F	TGGAGTGTGAATT		41	3	0.07	63	0	0				100	0	0.00			
DSCAML1	57453	mdanderson.org	37	11	117301733	117301733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020693	exon32	c.C5571A	p.S1857R	CACCATGCTGTTC		34	3	0.09	44	0	0				4	0	0.00			
FOXM1	2305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	2983605	2983605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001243089	exon2	c.C40T	p.R14W	GCCTCCGTCTTTT		100	6	0.06	55	0	0				86	1	0.01			
TNFRSF1A	7132	broad.mit.edu	37	12	6438980	6438980	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	TNFRSF1A	NM_001065	exon9	c.T1021G	p.W341G	CCTCCCACTTCTG		130	17	0.13	62	10	0.1612903226		39		533	13	0.02			
PLEKHA8P1	0	broad.mit.edu	37	12	45566846	45566846	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	PLEKHA8P1	.	.	.	.	TTTTTTTAATTTT		13	5	0.38	21	0	0		38		3	1	0.33			
KRT81	3887	hgsc.bcm.edu;broad.mit.edu	37	12	52681795	52681795	+	Silent	SNP	G	G	T	rs200239075	by1000genomes;alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	KRT81,NS,lymphoid_neoplasm,0,1	KRT81	NM_002281	exon5	c.C873A	p.A291A	GGCCTCGGCCCGG		97	4	0.04	73	0	0		0	1	0	0				
GOLGA3	2802	hgsc.bcm.edu	37	12	133353241	133353241	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	GOLGA3,right_upper_lobe,carcinoma,0,2	GOLGA3	NM_005895	exon21	c.A3957G	p.E1319E	TAGCCCTTCCAGT		62	3	0.05	82	2	0.0243902439		0	2	51	0	0.00			
DOCK9	23348	broad.mit.edu;mdanderson.org	37	13	99449463	99449463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	DOCK9	.	.	.	.	ATCAGACGTTCGT		116	7	0.06	175	0	0		311		45	0	0.00			
GAS6	2621	mdanderson.org	37	13	114538575	114538575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000820	exon7	c.G623T	p.G208V	GCCTCCCCGCAGG		47	3	0.06	92	0	0				115	0	0.00			
.	0	bcgsc.ca	37	14	20137652	20137652	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	AATTACGGCAGTG		12	4	0.33	22	0	0				2	0	0.00			
SALL2	6297	mdanderson.org	37	14	21992828	21992828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	SALL2,NS,carcinoma,0,1	SALL2	NM_005407	exon2	c.C1034A	p.P345Q	AGCCCTGGGGAGG		33	3	0.09	55	0	0		0	1	32	0	0.00			
PLEKHH1	57475	mdanderson.org	37	14	68035891	68035891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020715	exon8	c.C1300T	p.R434W	GGCATGCGGCTCT		44	3	0.07	43	0	0				7	0	0.00			
RPAP1	26015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	41819688	41819688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_015540	exon12	c.C1544T	p.A515V	CTTTTTGCTTTTC		88	8	0.09	105	0	0				28	2	0.07			
SLTM	79811	broad.mit.edu	37	15	59175946	59175946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	SLTM,colon,carcinoma,+1,1	SLTM	NM_024755	exon20	c.C2875T	p.R959W	TGTCCCGTCCATG		140	5	0.04	189	0	0		90	1	122	9	0.07	rescued with RNA-seq		
PIF1	80119	mdanderson.org	37	15	65116191	65116191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_025049	exon2	c.G344A	p.R115H	AGGAAGCGGCGCA		9	2	0.22	18	0	0				0	0				
DENND4A	10260	mdanderson.org	37	15	65962392	65962392	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001144823	exon26	c.C4596A	p.P1532P	CAGAAAGGGTAAG		50	3	0.06	75	0	0				9	0	0.00			
LOC645752	0	broad.mit.edu	37	15	78212706	78212711	+	RNA	DEL	AGGGCT	AGGGCT	-	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	AGGGCT	AGGGCT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	CTTAAAAGGGCTA		8	4	0.50	7	1	0.1428571429				0	0				
PDXDC1	23042	hgsc.bcm.edu	37	16	15122751	15122751	+	Silent	SNP	C	C	T	rs117411702	bycluster	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	PDXDC1,NS,carcinoma,0,3	PDXDC1	NM_015027	exon15	c.C1221T	p.A407A	TAAAGCCGTCCCA		98	10	0.10	70	1	0.0142857143	0.002	0	3	332	28	0.08			
ZDHHC1	29800	mdanderson.org	37	16	67428728	67428728	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_013304	exon11	c.G1299A	p.P433P	GGCCAGCGGCGTG		14	3	0.21	8	0	0				5	0	0.00			
ALOX12	239	mdanderson.org	37	17	6900302	6900302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000697	exon2	c.G293A	p.R98H	GCTACCGCTGGGT		37	3	0.08	13	0	0				8	0	0.00			
NLGN2	57555	broad.mit.edu;mdanderson.org	37	17	7311754	7311754	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	NLGN2	NM_020795	exon1	c.C180G	p.N60K	CAACAACGAGATC		32	3	0.09	26	0	0		61		4	0	0.00			
SENP3	26168	broad.mit.edu	37	17	7466636	7466636	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	SENP3	NM_015670	exon2	c.G243A	p.E81E	AGAAGAGGAGGAG		91	4	0.04	69	0	0		18		76	0	0.00			
KSR1	8844	mdanderson.org	37	17	25904572	25904572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_014238	exon4	c.G16T	p.V6L	GCCAAGGTGAAGG		33	3	0.09	31	0	0				15	0	0.00			
NOS2	4843	mdanderson.org	37	17	26089845	26089845	+	Missense_Mutation	SNP	C	C	T	rs373770638		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000625	exon22	c.G2779A	p.V927M	TGACCACGGCCAC		36	3	0.08	43	0	0				8	0	0.00			
GRB7	2886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	37901196	37901196	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001242442	exon9	c.C1039T	p.Q347X	GATGAGCAGAGCC		136	32	0.24	126	0	0				62	7	0.11			
HEXIM2	124790	broad.mit.edu	37	17	43246910	43246910	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	HEXIM2	NM_144608	exon4	c.C595G	p.R199G	TACGAACGCTTCC		36	3	0.08	38	0	0		19		38	2	0.05			
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45891018	45891018	+	Missense_Mutation	SNP	C	C	G	rs139618928	alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_145798	exon15	c.G1534C	p.E512Q	GCTCCTCGCAGAG		91	14	0.15	99	0	0				14	4	0.29			
MIR548W	100422923	hgsc.bcm.edu	37	17	60879148	60879148	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	GTGTTAGAGTCCT		56	16	0.29	61	0	0				0	0				
CD300A	11314	broad.mit.edu	37	17	72469724	72469724	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	CD300A	NM_007261	exon2	c.A90G	p.G30G	GGGGGGATCCCTG		62	19	0.31	71	15	0.2112676056		40		14	3	0.21			
C17orf99	100141515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76162016	76162016	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001163075	exon5	c.C687A	p.P229P	GAGCCCCATCCTT		111	24	0.22	99	0	0				5	1	0.20			
NARF	26502	mdanderson.org	37	17	80436760	80436760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_012336	exon6	c.G605A	p.G202D	TCATGGGCTCTTT		24	3	0.13	47	1	0.0212765957				82	0	0.00			
KCTD1	284252	mdanderson.org	37	18	24127920	24127920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001142730	exon1	c.C581A	p.P194Q	AAGTCCGGGCTCT		21	3	0.14	28	0	0				5	0	0.00			
GALNT1	2589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	33263468	33263468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020474	exon4	c.G595T	p.V199L	GCTGCTGTGTCTA		64	21	0.33	102	0	0				99	40	0.40			
EPG5	57724	mdanderson.org	37	18	43481039	43481039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020964	exon26	c.C4568A	p.S1523Y	GCAGAGGAAATAA		46	3	0.07	60	0	0				5	0	0.00			
ZCCHC2	54877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	60191501	60191501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_017742	exon1	c.G844A	p.E282K	CTGAGGGAACACT		41	17	0.41	53	0	0				5	2	0.40			
HMHA1	23526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1073680	1073680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001258328	exon5	c.G706A	p.E236K	GTGTCCGAGTTCC		38	9	0.24	41	0	0				27	0	0.00			
BTBD2	55643	mdanderson.org	37	19	1990038	1990038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_017797	exon5	c.G953A	p.R318H	GGGAAGCGAATGA		40	3	0.08	48	0	0				210	0	0.00			
ZFR2	23217	mdanderson.org	37	19	3831705	3831705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_015174	exon4	c.C551A	p.T184N	TAGGAGGTCACGA		21	3	0.14	28	0	0				0	0				
FCGBP	8857	broad.mit.edu;mdanderson.org	37	19	40366368	40366368	+	Missense_Mutation	SNP	G	G	C	rs151261300	bycluster;byfrequency;alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	FCGBP	NM_003890	exon30	c.C13866G	p.D4622E	GAGGTCGTCTGCG		40	4	0.10	46	0	0		416		57	11	0.19			
SPTBN4	57731	broad.mit.edu;mdanderson.org	37	19	41081444	41081444	+	Missense_Mutation	SNP	G	G	A	rs372875932		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	SPTBN4,colon,carcinoma,+1,1	SPTBN4	NM_020971	exon36	c.G7664A	p.G2555E	AAGGCGGAGATCG		16	3	0.19	27	0	0		213	1	6	2	0.33			
EML2	24139	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46116800	46116800	+	Splice_Site	SNP	C	C	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	EML2,NS,carcinoma,0,1	EML2	NM_001193268	exon21	c.G2426T	p.R809L	CTCACTCGAGGCT		45	5	0.11	48	0	0		64	1	99	7	0.07			
SLC20A1	6574	mdanderson.org	37	2	113414819	113414819	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_005415	exon6	c.778+1G>T	.	TTGAACGTAAGTA		79	4	0.05	80	0	0				5	0	0.00			
POTEF	728378	broad.mit.edu	37	2	130877755	130877755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	POTEF	NM_001099771	exon3	c.A334G	p.S112G	TGCTGCTCCCCCT		179	5	0.03	167	0	0		140		1	0	0.00			
C2orf54	79919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241835040	241835040	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001085437	exon1	c.C375T	p.T125T	ATCCTCGGTGGTC		108	10	0.09	114	0	0				15	6	0.40			
GFRA4	64096	broad.mit.edu	37	20	3641387	3641400	+	Splice_Site	DEL	CCCGGCCGCGCGTA	CCCGGCCGCGCGTA	-	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	CCCGGCCGCGCGTA	CCCGGCCGCGCGTA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	GFRA4	.	.	.	.	CCGGATCCCGGCC		10	4	0.40	9	0	0		10		0	0				
.	0	broad.mit.edu	37	20	10869747	10869748	+	RNA	INS	-	-	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	TTTTTTATTTTTT		6	2	0.33	7	0	0				0	0				
PFDN4	5203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	52830954	52830954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_002623	exon2	c.C89G	p.T30R	GGAATACAAGTAG		395	117	0.30	372	0	0				97	28	0.29			
TUBB1	81027	hgsc.bcm.edu;bcgsc.ca	37	20	57599434	57599434	+	Missense_Mutation	SNP	C	C	T	rs121918555	bycluster;by1000genomes	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_030773	exon4	c.C952T	p.R318W	ATTTTCCGGGGCA		69	4	0.06	43	0	0	0			0	0				
ZNRF3	84133	mdanderson.org	37	22	29446834	29446834	+	Missense_Mutation	SNP	C	C	T	rs375016509		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001206998	exon8	c.C2665T	p.R889W	CTACTGCGGCCTG		23	2	0.09	32	0	0				20	0	0.00			
SH3BP1	23616	mdanderson.org	37	22	38051389	38051389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_018957	exon18	c.C1804A	p.P602T	GGGACCCCCCAAG		17	3	0.18	22	0	0				45	0	0.00			
RRP7B	91695	hgsc.bcm.edu	37	22	42976780	42976780	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	GGCCTCACACATG		266	70	0.26	347	0	0				0	0				
TTC38	55020	broad.mit.edu	37	22	46685729	46685729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	TTC38,NS,carcinoma,0,1	TTC38	NM_017931	exon13	c.G1249T	p.V417F	AGAGACGTCTTCA		58	3	0.05	67	0	0		40	1	83	0	0.00			
CELSR1	9620	mdanderson.org	37	22	46860176	46860176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_014246	exon2	c.C3611A	p.T1204N	CTGTTGGTCAGCA		37	3	0.08	82	0	0				2	0	0.00			
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4687295	4687295	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001099952	exon10	c.G738A	p.E246E	TGCTGAGCAGGAG		101	24	0.24	98	0	0				2	0	0.00			
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52492740	52492740	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001276293	exon3	c.C240G	p.N80K	GAAAAACTCAAGA		110	23	0.21	97	0	0				45	21	0.47			
PDZRN3	23024	mdanderson.org	37	3	73433414	73433414	+	Missense_Mutation	SNP	G	G	T	rs376105538	alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_015009	exon10	c.C2303A	p.P768Q	GTGAGCGGGGTGC		38	4	0.11	40	0	0				34	0	0.00			
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132408024	132408024	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_153240	exon20	c.T2777G	p.L926W	TGCTTCAATGAAT		113	25	0.22	134	0	0				22	7	0.32			
TFRC	7037	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195789794	195789794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	TFRC	NM_001128148	exon12	c.C1335A	p.S445R	GCTTCTGCTGGGC		65	5	0.08	73	0	0		54		34	0	0.00			
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77631363	77631363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020859	exon3	c.C378A	p.S126R	CGTCAGCCCAGAA		199	69	0.35	245	0	0				10	4	0.40			
OTUD4	54726	hgsc.bcm.edu	37	4	146059041	146059041	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	OTUD4,bladder,carcinoma,0,2	OTUD4	NM_001102653	exon21	c.T2691C	p.H897H	GGGAGGATGAGCC		70	3	0.04	122	0	0		0	2	18	0	0.00			
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	148993187	148993187	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_024605	exon23	c.C2316G	p.N772K	TCTGAACGGCAAG		59	12	0.20	53	0	0				22	0	0.00			
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1093664	1093664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_006598	exon3	c.G326T	p.R109L	CGCCGCCGGCTCT		50	16	0.32	36	0	0				26	12	0.46			
ADCY2	108	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	7707008	7707008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	ADCY2,NS,carcinoma,-2,1	ADCY2	NM_020546	exon8	c.G1261T	p.V421F	GGAGGGGTCCCTG		64	5	0.08	52	0	0		337	1	1	1	1.00			
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	23527778	23527778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020227	exon11	c.G2581A	p.V861I	CCCTACGTCTGCA		191	39	0.20	209	0	0				0	0				
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu	37	5	38448404	38448404	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001205301	exon19	c.G2490T	p.T830T	CCCAGCGATCATA		70	4	0.06	69	0	0				24	0	0.00			
BMP6	654	mdanderson.org	37	6	7727541	7727541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	BMP6,NS,carcinoma,0,1	BMP6	NM_001718	exon1	c.A353T	p.Q118L	AGCAGCAGCTGCC		25	3	0.12	35	0	0		0	1	2	0	0.00			
VARS2	57176	broad.mit.edu	37	6	30882614	30882614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	VARS2	NM_001167734	exon2	c.A91G	p.M31V	CTCCTGATGCCTC		158	4	0.03	131	0	0		60		32	4	0.13	rescued with RNA-seq		
MSH5	4439	mdanderson.org	37	6	31726391	31726391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_025259	exon14	c.G1261T	p.D421Y	GAAATTGATGAGA		81	4	0.05	87	0	0				77	0	0.00			
IPCEF1	26034	mdanderson.org	37	6	154544307	154544307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001130699	exon7	c.A317G	p.K106R	TACTGCTTTTTCT		43	3	0.07	51	0	0				0	0				
LPA	4018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160999712	160999712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_005577	exon28	c.G4314T	p.R1438S	TGGATTCCTGCAG		97	18	0.19	93	0	0				0	0				
TNS3	64759	mdanderson.org	37	7	47474985	47474985	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_022748	exon8	c.G219A	p.W73X	CTCTGGCCAGCCC		34	3	0.09	35	0	0				19	0	0.00			
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	53103898	53103898	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_182595	exon1	c.G534T	p.L178L	GACTCTGCTGGGG		34	9	0.26	35	0	0				0	0				
CCT6P3	0	broad.mit.edu	37	7	64528813	64528814	+	RNA	INS	-	-	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	CTGTAACTTTTTT		9	3	0.33	11	0	0				2	0	0.00			
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	CCGGGGTCCTTGA		134	3	0.02	110	1	0.0090909091				0	0				
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	151845608	151845608	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_170606	exon52	c.G13404A	p.T4468T	GGCACCCGTCTTG		108	6	0.06	86	0	0				24	0	0.00			
MFHAS1	9258	mdanderson.org	37	8	8748682	8748682	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_004225	exon1	c.C1887A	p.C629X	GTCCCTGCAGCTA		25	3	0.12	28	0	0				15	0	0.00			
RP1L1	94137	hgsc.bcm.edu	37	8	10465934	10465934	+	Missense_Mutation	SNP	T	T	C	rs202056828		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	RP1L1,NS,carcinoma,+1,1	RP1L1	NM_178857	exon4	c.A5674G	p.T1892A	CTGGGGTCTCTAC		56	10	0.18	64	2	0.03125		1	1	0	0				
RP1L1	94137	bcgsc.ca	37	8	10466034	10466034	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	RP1L1	NM_178857	exon4	c.G5574A	p.G1858G	GGCATCCCCTTCT		27	5	0.19	79	0	0		453		0	0				
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24151704	24151704	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_014265	exon1	c.T42G	p.V14V	CTCTGTTGCAGGT		82	15	0.18	87	0	0				0	0				
ZC3H3	23144	broad.mit.edu	37	8	144522222	144522222	+	Missense_Mutation	SNP	G	G	C	rs112624965	bycluster	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	ZC3H3	NM_015117	exon11	c.C2804G	p.T935S	TCCTTGGTGAGGG		44	5	0.11	36	0	0		75		83	0	0.00			
SLC24A2	25769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19597247	19597247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	SLC24A2	NM_020344	exon4	c.A1109G	p.Y370C	GTGTCATAATATT		134	38	0.28	151	1	0.0066225166		93		0	0				
UNC13B	10497	ucsc.edu;bcgsc.ca	37	9	35397638	35397638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	UNC13B	NM_006377	exon29	c.G3436T	p.G1146W	ACCATCGGGAAGG		32	4	0.13	33	0	0		153		32	0	0.00			
DAB2IP	153090	mdanderson.org	37	9	124528809	124528809	+	Silent	SNP	G	G	T	rs371966536	alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	DAB2IP_ENST00000259371,rectum,carcinoma,0,3	DAB2IP_ENST00000259371	NM_032552	exon9	c.G1413T	p.S471S	TGCCTCGTGGAGG		24	2	0.08	27	0	0		0	3	21	0	0.00			
SURF4	6836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136234314	136234314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_033161	exon2	c.G56A	p.R19H	GTGACACGGAGGA		41	5	0.12	49	0	0				186	47	0.25			
SNAPC4	6621	mdanderson.org	37	9	139272510	139272510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_003086	exon21	c.C3769A	p.P1257T	GGGGCGGCTTCTC		28	3	0.11	46	0	0				17	0	0.00			
TCEANC	170082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	13681576	13681576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_152634	exon4	c.C1039T	p.L347F	CTTTTCCTTCCCA		123	12	0.10	108	0	0				3	0	0.00			
PHEX	5251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	22208575	22208575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000444	exon15	c.C1601T	p.P534L	CAAATCCGACGAC		80	21	0.26	67	0	0				3	1	0.33			
ZNF630	57232	broad.mit.edu	37	X	47919586	47919586	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	ZNF630	NM_001037735	exon5	c.T245A	p.V82E	CCTTTCACTCTGT		66	11	0.17	37	0	0		71		3	0	0.00			
SSX9	280660	hgsc.bcm.edu	37	X	48161015	48161015	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	GGTGCTACATCAG		167	54	0.32	152	0	0				0	0				
GATA1	2623	broad.mit.edu	37	X	48652265	48652265	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	GATA1	NM_002049	exon6	c.A936G	p.K312K	TGGAAAAGGGAAA		134	3	0.02	105	1	0.0095238095		342		1	0	0.00			
SLC25A14	9016	broad.mit.edu	37	X	129474305	129474305	+	Missense_Mutation	SNP	C	C	T	rs371552768		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	SLC25A14	NM_022810	exon1	c.C53T	p.T18M	TTGCAACGGCGGC		91	3	0.03	91	0	0		49		1	0	0.00			
.	100874520	bcgsc.ca	37	Y	10011766	10011766	+	RNA	SNP	C	C	T	rs399592	bycluster;byfrequency;bysubmitter	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	AAACTGCCCCTCC		51	9	0.18	48	0	0				0	0				
PRKDC	5591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48749779	48749779	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	CTGAAATTCGCAT		46	10	0.22	54	0	0				55	8	0.15			
