Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MMP23A	8511	hgsc.bcm.edu	37	1	1569784	1569784	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	AGGCAGCGGGGGG		62	4	0.06	52	0	0				0	0				
NBPF1	55672	broad.mit.edu;mdanderson.org	37	1	16890591	16890591	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	AGGTAGTTCAAAG		1011	19	0.02	752	1	0.0013297872				85	0	0.00			
.	100421113	bcgsc.ca	37	1	17077186	17077186	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	AGCCAAGACCTGG		119	9	0.08	92	0	0				0	0				
FNBP1L	54874	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	93996313	93996313	+	Splice_Site	SNP	C	C	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	FNBP1L	NM_001164473	exon7	c.C512T	p.A171V	CCTAGGCCAAACA		871	97	0.11	591	1	0.0016920474		56		140	40	0.29			
NAV1	89796	hgsc.bcm.edu	37	1	201786261	201786261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_020443	exon29	c.C5386T	p.R1796W	TGGGTCCGGGACA		96	4	0.04	84	0	0				61	0	0.00			
TRIM11	81559	ucsc.edu	37	1	228582736	228582736	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	TRIM11	NM_145214	exon6	c.C1077A	p.C359X	CTCCCTGCACACC		42	4	0.10	45	0	0		38		113	0	0.00			
PRR26	414235	mdanderson.org	37	10	696311	696311	+	RNA	SNP	C	C	T	rs187635206	by1000genomes	TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	GGATAACGCCAGC		51	4	0.08	43	0	0	0			1	0	0.00			
SKIDA1	387640	broad.mit.edu;mdanderson.org	37	10	21806056	21806056	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_207371	exon4	c.C696T	p.A232A	AGCAGCGGCGGCG		16	4	0.25	23	0	0				0	0				
KIAA1217	56243	hgsc.bcm.edu;mdanderson.org	37	10	24810770	24810770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	KIAA1217,colon,carcinoma,0,1	KIAA1217	NM_019590	exon12	c.G2368T	p.V790L	GAGGCCGTGCGGT		58	3	0.05	48	0	0		0	1	3	0	0.00			
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	61844468	61844468	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001204404	exon33	c.T3969A	p.D1323E	TACGGGATCATTC		176	23	0.13	135	0	0				24	9	0.38			
TET1	80312	bcgsc.ca	37	10	70332383	70332383	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	TET1	NM_030625	exon2	c.C288G	p.S96S	AGAGTCCTTAACC		148	0	0.00	104	0	0		255		17	0	0.00			
GRID1	2894	broad.mit.edu;mdanderson.org	37	10	87373227	87373227	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	GRID1	NM_017551	exon15	c.C2538A	p.C846X	CACCAGGCAGGCC		121	10	0.08	135	1	0.0074074074		204		1	0	0.00			
STAMBPL1	57559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	90672864	90672864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_020799	exon6	c.T427C	p.Y143H	AACAAATATAAAG		51	6	0.12	38	0	0				19	0	0.00			
MMS19	64210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	99218609	99218609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_022362	exon30	c.G3013A	p.D1005N	TGTCATCCAGGGG		206	22	0.11	150	0	0				488	100	0.20			
SEC31B	25956	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	102250017	102250017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_015490	exon21	c.C2713T	p.P905S	TCCCAGGGAATCC		177	18	0.10	137	0	0				11	1	0.09			
RASSF7	8045	mdanderson.org	37	11	562658	562658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001143994	exon3	c.C704A	p.A235E	CTATGGCATCTGC		19	3	0.16	14	0	0				42	0	0.00			
CDHR5	53841	broad.mit.edu	37	11	617401	617401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	CDHR5	NM_021924	exon15	c.A2488G	p.R830G	CACCCCTCCCCGC		114	22	0.19	143	12	0.0839160839		77		1	0	0.00			
STIM1	6786	mdanderson.org	37	11	4107735	4107735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_003156	exon11	c.G1503T	p.Q501H	TCGGCAGCGCCTG		134	5	0.04	131	0	0				91	0	0.00			
CKAP5	9793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	46812057	46812057	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001008938	exon14	c.G1727C	p.G576A	TCCAGTCCTTTCT		146	9	0.06	165	0	0				137	49	0.36			
FTH1	2495	mdanderson.org	37	11	61732885	61732885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_002032	exon2	c.C217A	p.L73M	TCTGCAGCTTCAT		51	3	0.06	54	0	0				3467	0	0.00			
CEP164	22897	broad.mit.edu	37	11	117268013	117268013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	CEP164	NM_001271933	exon26	c.G3494A	p.R1165H	ATATGCGCAAGAA		111	4	0.04	133	0	0		121		37	0	0.00			
WNT5B	81029	bcgsc.ca	37	12	1755317	1755317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	WNT5B	NM_032642	exon5	c.A979G	p.K327E	CAGTTCAAGAGCG		90	0	0.00	61	0	0		27		36	0	0.00			
RBP5	0	broad.mit.edu	37	12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		8	3	0.38	5	0	0		20		12	0	0.00			
ZFC3H1	196441	mdanderson.org	37	12	72057209	72057209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_144982	exon1	c.C182T	p.A61V	CCCCGGGCCGAGT		51	3	0.06	33	0	0				13	0	0.00			
HECTD4	283450	bcgsc.ca	37	12	112641514	112641514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001109662	exon54	c.G7930A	p.A2644T	GCAGAGCAGTTCC		243	0	0.00	175	0	0				29	0	0.00			
KDM2B	84678	mdanderson.org	37	12	121881564	121881564	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_032590	exon17	c.C2484A	p.S828S	GTGAGAGGAGGAA		24	2	0.08	26	0	0				167	0	0.00			
TPTE2	93492	broad.mit.edu	37	13	20025336	20025336	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	TPTE2	NM_199254	exon12	c.T771C	p.H257H	GTTTCGATGTTTC		94	9	0.10	86	1	0.011627907		225		2	0	0.00			
RNF113B	140432	mdanderson.org	37	13	98829406	98829406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_178861	exon1	c.G85T	p.G29W	CAGCCCCTTTCCG		24	3	0.13	30	0	0				2	0	0.00			
.	0	broad.mit.edu	37	14	20138373	20138374	+	RNA	INS	-	-	AAG	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	CAAAAGAAAGAAA		29	9	0.31	31	0	0				0	0				
.	0	bcgsc.ca	37	14	22054477	22054477	+	RNA	SNP	C	C	T	rs11847952	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	CTTCATCGCCAGT		46	0	0.00	34	0	0				0	0				
EFS	0	broad.mit.edu	37	14	23828820	23828820	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	EFS	NM_005864	exon4	c.A867C	p.P289P	TGGGGGTGGGGGG		54	12	0.22	40	1	0.025		37		1	0	0.00			
KLHDC2	23588	bcgsc.ca	37	14	50249093	50249093	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	KLHDC2	NM_014315	exon11	c.G962C	p.W321S	GGTTATGGCACAC		220	1	0.00	119	0	0		33		286	0	0.00			
ATG2B	55102	broad.mit.edu	37	14	96752258	96752258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ATG2B	NM_018036	exon42	c.T6071G	p.V2024G	CCAGTCACCCCTC		214	34	0.16	158	14	0.0886075949		169		75	3	0.04			
EVL	51466	broad.mit.edu	37	14	100594980	100594980	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	EVL	NM_016337	exon6	c.A612C	p.P204P	TCCCCCACCCCCA		75	26	0.35	58	9	0.1551724138		42		96	1	0.01			
TNFRSF12A	51330	mdanderson.org	37	16	3071298	3071298	+	Silent	SNP	G	G	A	rs2232797	bycluster;by1000genomes	TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_016639	exon2	c.G177A	p.P59P	GCGACCGCACAGC		22	2	0.09	22	0	0	0.002			16	0	0.00			
ZNF205	7755	bcgsc.ca	37	16	3169402	3169402	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ZNF205	NM_003456	exon7	c.G741T	p.P247P	AGGGCCGGCCAAA		44	0	0.00	57	0	0		42		50	0	0.00			
SMG1	23049	bcgsc.ca	37	16	18846457	18846457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SMG1	NM_015092	exon49	c.C8087A	p.P2696H	GTTGGGGGTGGCT		81	0	0.00	74	0	0		401		42	0	0.00			
MNT	4335	broad.mit.edu;mdanderson.org	37	17	2298498	2298498	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	MNT	NM_020310	exon2	c.C324T	p.P108P	TGCCGCGGGCAAG		17	4	0.24	23	0	0		35		12	6	0.50			
.	0	broad.mit.edu	37	17	18334177	18334177	+	RNA	DEL	T	T	-	rs72001069		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	TCTCTGTTTTTTT		150	8	0.05	155	0	0				0	0				
SLC47A2	146802	mdanderson.org	37	17	19618501	19618501	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001099646	exon2	c.C153A	p.I51I	GATGTAGATCATA		33	3	0.09	22	0	0				1	0	0.00			
PLEKHM1	9842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	43522989	43522989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_014798	exon9	c.C2684T	p.A895V	GGCTGGGCCCGGA		166	32	0.19	118	0	0				18	0	0.00			
ACE	1636	mdanderson.org	37	17	61574523	61574523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_000789	exon25	c.C3717A	p.D1239E	CCCAGACAGCGGC		39	3	0.08	31	0	0				270	0	0.00			
BIRC5	0	broad.mit.edu	37	17	76219856	76219857	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	TC	TC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	BIRC5	.	.	.	.	GCTGCTTCTCTCT		56	7	0.13	12	0	0		32		304	0	0.00			
DNAH17	8632	broad.mit.edu	37	17	76488820	76488820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	DNAH17	NM_173628	exon42	c.C6436A	p.Q2146K	GGTTCTGATAGGT		147	5	0.03	98	0	0		347		1	0	0.00			
AATK	9625	mdanderson.org	37	17	79104942	79104942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001080395	exon3	c.G253A	p.A85T	GTGCTGCCGTGGC		48	3	0.06	33	0	0				2	0	0.00			
DSG2	1829	bcgsc.ca	37	18	29122743	29122743	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	DSG2,NS,malignant_melanoma,+1,2	DSG2	NM_001943	exon14	c.C2262T	p.S754S	GGCTTCCAGAGAC		127	0	0.00	115	0	0		115	2	251	0	0.00			
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	38948767	38948767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001042723	exon18	c.G2002T	p.D668Y	ATGGTGGACGAGG		128	16	0.13	91	0	0				2	0	0.00			
.	0	broad.mit.edu	37	19	50578553	50578554	+	RNA	INS	-	-	GG	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	AGGGGCTGGGCCT		228	7	0.03	208	0	0				0	0				
.	0	broad.mit.edu	37	19	50578560	50578560	+	RNA	DEL	G	G	-	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	GGGCCTGGGACTC		213	9	0.04	190	0	0				0	0				
ZNF28	7576	ucsc.edu	37	19	53304632	53304632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ZNF28	NM_006969	exon4	c.C466T	p.P156S	CTTCAGGCTGAAA		201	7	0.03	122	6	0.0491803279		191		66	8	0.12	rescued with RNA-seq		
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	32626436	32626436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_016252	exon7	c.G1240C	p.V414L	TGGGATGTTTCCA		200	26	0.13	131	0	0				5	2	0.40			
MSH6	2956	bcgsc.ca	37	2	48026849	48026849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	MSH6	NM_000179	exon4	c.A1727C	p.D576A	CAGATGATCGCCA		217	0	0.00	153	0	0		341		350	0	0.00			
STON1	11037	bcgsc.ca	37	2	48809124	48809124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	STON1	NM_001198595	exon3	c.A1352G	p.N451S	ATGGGAACCTGGA		179	0	0.00	148	0	0		100		2	0	0.00			
PSME4	23198	bcgsc.ca	37	2	54155274	54155274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	PSME4	NM_014614	exon11	c.A1483G	p.N495D	AGTCATTTGGATC		170	1	0.01	169	0	0		247		46	0	0.00			
.	0	broad.mit.edu	37	2	89185535	89185535	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	TACTGGGCATCTA		225	5	0.02	246	0	0				12435	55	0.00			
BUB1	699	broad.mit.edu	37	2	111406949	111406949	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	BUB1	NM_004336	exon19	c.A2209T	p.I737F	CAACAATGAAGTC		316	23	0.07	223	10	0.0448430493		91		298	0	0.00			
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	EEF1B2,NS,carcinoma,0,19	EEF1B2	NM_021121	exon3	c.A127G	p.S43G	GTGTCCAGCCCAC		219	4	0.02	201	1	0.0049751244		58	19	3352	5	0.00			
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	EEF1B2,NS,carcinoma,0,19	EEF1B2	NM_021121	exon3	c.G135A	p.P45P	CCCACCGCCTGCC		216	4	0.02	194	1	0.0051546392		58	19	3453	1	0.00			
HDAC4	9759	broad.mit.edu	37	2	240048208	240048208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	HDAC4	NM_006037	exon12	c.C1462A	p.Q488K	GAAACTGCTGATG		100	3	0.03	87	0	0		127		7	0	0.00			
PRR21	643905	broad.mit.edu	37	2	240982060	240982060	+	Missense_Mutation	SNP	C	C	A	rs201132375	bycluster	TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	PRR21	NM_001080835	exon1	c.G340T	p.G114C	AAGGGCCGTGGGT		85	6	0.07	71	2	0.0281690141		53		0	0				
ANGPT4	51378	mdanderson.org	37	20	865968	865968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_015985	exon4	c.C588A	p.S196R	GAGCGCGCTGCGG		23	2	0.09	20	0	0				0	0				
TMX4	56255	broad.mit.edu	37	20	8000252	8000252	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	TMX4	NM_021156	exon1	c.T9G	p.G3G	GCGCCCACCCGCC		50	27	0.54	47	14	0.2978723404		39		5	0	0.00			
BAGE2	85319	broad.mit.edu	37	21	11057305	11057306	+	RNA	INS	-	-	G	rs150202290	bycluster	TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	GAAGATAGGAAAA		7	3	0.43	6	0	0				0	0				
.	54099	bcgsc.ca	37	21	33000644	33000644	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	AACCAGGTACAAA		155	0	0.00	89	0	0				1	0	0.00			
UMODL1	89766	bcgsc.ca	37	21	43531009	43531009	+	Missense_Mutation	SNP	G	G	A	rs200274014		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	UMODL1	NM_173568	exon11	c.G1677A	p.M559I	CCCCATGGGCGGT		215	0	0.00	182	0	0		186		0	0				
SLC37A1	54020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	21	43999906	43999906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_018964	exon20	c.G1582A	p.V528I	GACCAAGTTCCGT		95	11	0.12	42	0	0				77	17	0.22			
LRP5L	91355	bcgsc.ca	37	22	25755835	25755835	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	LRP5L	NM_001135772	exon3	c.C225T	p.D75D	GTCCATGTCCTCT		151	0	0.00	163	0	0		23		9	0	0.00			
ITPR1	3708	bcgsc.ca	37	3	4747945	4747945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ITPR1	NM_001099952	exon37	c.G4725T	p.M1575I	AGCCATGAACTGG		110	0	0.00	73	0	0		659		4	0	0.00			
SLC4A7	9497	broad.mit.edu	37	3	27473139	27473140	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	SLC4A7,NS,carcinoma,-1,1	SLC4A7	NM_003615	exon7	c.773_774insC	p.R258fs	GAGTGGCGGGAGG		149	11	0.07	97	0	0		119	1	0	0				
TNIK	23043	broad.mit.edu	37	3	170875321	170875321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	TNIK	NM_001161562	exon12	c.C1149A	p.H383Q	CCGCTTGTGCTCC		216	5	0.02	197	2	0.0101522843		313		2	0	0.00			
FGFRL1	53834	broad.mit.edu	37	4	1016078	1016078	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	FGFRL1	NM_001004356	exon3	c.A167C	p.D56A	AGGGGGACCCGCC		90	11	0.12	78	7	0.0897435897		77		21	0	0.00			
FGFRL1	53834	hgsc.bcm.edu	37	4	1019078	1019078	+	Silent	SNP	T	T	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	FGFRL1,colon,carcinoma,+2,1	FGFRL1	NM_001004356	exon7	c.T1458A	p.S486S	ACACTCTCACACA		224	9	0.04	264	2	0.0075757576		2	1	98	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	55599338	55599338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	KIT,NS,malignant_melanoma,0,44	KIT	NM_000222	exon17	c.A2464T	p.N822Y	GATTCTAATTATG		159	15	0.09	90	0	0		0	44	976	198	0.20			
UGT2B11	10720	mdanderson.org	37	4	70066408	70066408	+	Missense_Mutation	SNP	C	C	A	rs200919649		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001073	exon6	c.G1340T	p.R447I	TGAATTCTTGATA		188	11	0.06	80	3	0.0375				0	0				
MIR1305	0	broad.mit.edu	37	4	183090233	183090234	+	RNA	INS	-	-	ACAT	rs147460271	bycluster;by1000genomes	TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	TACACACACACAC		20	9	0.45	7	0	0				0	0				
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	170669748	170669748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_022897	exon24	c.G2700T	p.M900I	CCATATGAGCTTC		193	20	0.10	152	0	0				26	4	0.15			
.	0	broad.mit.edu	37	6	29478153	29478156	+	RNA	DEL	AGAG	AGAG	-	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	AGAG	AGAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	GGGGGCAGAGAGA		6	2	0.33	5	0	0				0	0				
PRRC2A	7916	broad.mit.edu	37	6	31593349	31593349	+	Silent	SNP	A	A	C	rs200705973		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	PRRC2A,NS,carcinoma,0,1	PRRC2A	NM_004638	exon7	c.A720C	p.P240P	AGGCCCACCCCAG		148	20	0.14	134	8	0.0597014925		152	1	214	3	0.01			
ARMC12	221481	mdanderson.org	37	6	35705924	35705924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_145028	exon2	c.G365A	p.R122H	TCACTCGCTGTGT		42	3	0.07	40	0	0				0	0				
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	4304811	4304811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_152744	exon45	c.A6437G	p.Y2146C	ACCACTACATGAG		116	8	0.07	82	0	0				3	0	0.00			
INHBA	3624	broad.mit.edu	37	7	41729988	41729988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	INHBA	NM_002192	exon3	c.C541A	p.H181N	GCGGGTGCTTCTG		167	5	0.03	131	1	0.0076335878		118		2	0	0.00			
CCT6P3	0	broad.mit.edu;ucsc.edu	37	7	64528850	64528850	+	RNA	SNP	T	T	G	rs2949472	by1000genomes	TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	TCTGGCTTTTTTT		37	6	0.16	22	0	0				9	0	0.00			
.	378108	broad.mit.edu	37	7	72436665	72436666	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	CA	CA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	TRIM74,NS,carcinoma,0,1	.	.	.	.	p.L8P	CAGCTCCAGCAGG		192	7	0.04	138	1	0.0072463768			1	0	0				
MUC17	140453	hgsc.bcm.edu	37	7	100681533	100681533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001040105	exon3	c.C6836A	p.T2279N	GAACGACTCCATT		175	8	0.05	102	0	0				0	0				
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	104703808	104703808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_018682	exon4	c.A197G	p.Y66C	ATAATTATGGTGC		241	30	0.12	134	0	0				29	2	0.07			
HYAL4	23553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	123508991	123508991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_012269	exon3	c.G664A	p.D222N	TATCCTGATTGCC		178	22	0.12	103	0	0				89	9	0.10			
SLC37A3	84255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	140064288	140064288	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_207113	exon5	c.C295T	p.L99L	TGAATAGGCCCTA		207	18	0.09	110	0	0				210	30	0.14			
EPHB6	2051	bcgsc.ca;mdanderson.org	37	7	142562074	142562074	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	EPHB6	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT		151	9	0.06	95	1	0.0105263158		168		8	0	0.00			
ZFHX4	79776	bcgsc.ca	37	8	77775451	77775451	+	Silent	SNP	T	T	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	ZFHX4,colon,carcinoma,0,3	ZFHX4	NM_024721	exon11	c.T9501A	p.P3167P	ACCACCTCCTCCT		143	1	0.01	118	0	0		878	3	2	0	0.00			
KLF10	7071	broad.mit.edu	37	8	103663762	103663762	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	KLF10	NM_005655	exon3	c.A798G	p.G266G	TGGCACTCCCCCT		96	4	0.04	70	1	0.0142857143		44		121	0	0.00			
LRP12	29967	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	105509852	105509852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_013437	exon5	c.G928T	p.G310C	CATAACCAGTACC		401	37	0.09	255	0	0				11	2	0.18			
.	0	bcgsc.ca	37	9	40500069	40500069	+	RNA	SNP	A	A	T	rs2774142	by2hit2allele	TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	AACCCAACTTTTT		207	12	0.06	189	3	0.0158730159				1	0	0.00			
.	0	broad.mit.edu	37	9	66458656	66458657	+	RNA	DEL	TT	TT	-	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	CTTAACTTTTTAA		8	3	0.38	4	0	0				1	0	0.00			
RBM10	8241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	47039331	47039331	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001204468	exon10	c.G1149T	p.G383G	CCTGGGGGCCCTG		136	28	0.21	134	0	0				94	42	0.45			
FOXP3	50943	broad.mit.edu;mdanderson.org	37	X	49108105	49108105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	FOXP3	.	.	.	.	GTCACCGCCACCT		56	4	0.07	29	0	0		26		0	0				
PPP1R3F	89801	mdanderson.org	37	X	49143522	49143522	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_033215	exon4	c.G2370T	p.A790A	GCTTGCGCTGTGC		59	3	0.05	39	0	0				2	0	0.00			
TRO	7216	broad.mit.edu	37	X	54949634	54949634	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	TRO	NM_016157	exon3	c.G669A	p.S223S	GGTCTCGCTGGCT		230	5	0.02	166	1	0.0060240964		246		86	0	0.00			
PDZD4	57595	mdanderson.org	37	X	153069413	153069413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_032512	exon8	c.C1705T	p.R569W	GGCGCCGCGAGAG		43	3	0.07	29	1	0.0344827586				7	0	0.00			
.	352905	bcgsc.ca	37	Y	59001457	59001457	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	CAAGCAATTCATC		42	2	0.05	35	0	0				1	0	0.00			
