Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
AHDC1	27245	broad.mit.edu	37	1	27878527	27878528	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	AHDC1	NM_001029882	exon6	c.100_101insC	p.T34fs	GGGGGGTGGGGGG		38	10	0.26	51	0	0		98		5	0	0.00			
SF3A3	10946	broad.mit.edu	37	1	38442580	38442580	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	SF3A3	NM_006802	exon12	c.C981A	p.I327I	TTCATAGATCTGG		102	4	0.04	98	0	0		37		374	0	0.00			
ATP1A4	480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160151732	160151732	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_144699	exon20	c.A2880G	p.L960L	AGTCTTAATATTT		114	58	0.51	128	0	0				16	6	0.38			
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204403713	204403713	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_002646	exon25	c.C3540T	p.S1180S	AGCGCAGGAGTAG		105	21	0.20	145	0	0				16	3	0.19			
AKT3	10000	mdanderson.org	37	1	243828083	243828083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001206729	exon4	c.C275A	p.P92Q	TCCTCTGGAGTAT		43	3	0.07	64	0	0				36	1	0.03			
ARHGAP21	57584	mdanderson.org	37	10	24908615	24908615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_020824	exon9	c.C2209A	p.L737I	CCCTTAGGATGAC		92	4	0.04	101	0	0				30	0	0.00			
UBE2D1	7321	mdanderson.org	37	10	60121140	60121140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_003338	exon2	c.G67T	p.A23S	TGTTCAGCTGGAC		116	5	0.04	133	0	0				68	0	0.00			
MUC2	4583	mdanderson.org	37	11	1093324	1093324	+	Missense_Mutation	SNP	G	G	A	rs201143282		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5143A	p.G1715S	CCCACCGGCACAC		21	4	0.19	27	1	0.037037037		0	2	0	0				
NAT10	55226	broad.mit.edu	37	11	34149080	34149080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	NAT10	NM_024662	exon12	c.T1178C	p.I393T	CCGCCATCCCCCT		155	4	0.03	212	0	0		78		88	0	0.00			
PLCB3	5331	mdanderson.org	37	11	64032973	64032973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_000932	exon25	c.C3034A	p.L1012I	GGTGCCCTGTGAG		38	3	0.08	18	0	0				86	0	0.00			
SNX32	254122	mdanderson.org	37	11	65617691	65617691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_152760	exon4	c.A323G	p.D108G	AGGGGGACAGCTC		59	4	0.07	86	0	0				0	0				
TCIRG1	10312	mdanderson.org	37	11	67818021	67818021	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_006019	exon19	c.G2304T	p.V768V	GGGCGTGGCGGCT		50	3	0.06	75	0	0				35	0	0.00			
PAK1	5058	mdanderson.org	37	11	77085377	77085377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001128620	exon5	c.C473A	p.A158D	ACCAAGGCATTAG		52	3	0.06	73	0	0				91	0	0.00			
GXYLT1	283464	hgsc.bcm.edu	37	12	42481670	42481671	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	CA	CA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	Q8IXV1_HUMAN,NS,carcinoma,0,4	Q8IXV1_HUMAN	NM_173601	exon8	c.T1240C	p.C414H	TTTCCACAGTATG		74	4	0.05	95	1	0.0105263158		0	4	54	0	0.00			
MYO16	23026	mdanderson.org	37	13	109445885	109445885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	MYO16,rectum,carcinoma,0,1	MYO16	NM_001198950	exon6	c.G638T	p.R213L	CACTGCGCCAGAT		55	3	0.05	91	0	0		0	1	0	0				
.	0	broad.mit.edu	37	14	19890158	19890160	+	RNA	DEL	GCC	GCC	-	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	GCC	GCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	.	.	.	.	GCAGCGGCCGCCA		7	3	0.43	4	0	0				0	0				
FOXA1	3169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	38064138	38064138	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_004496	exon1	c.G40C	p.D14H	TCCAGTCGCTGGT		79	8	0.10	106	0	0				70	7	0.10			
HIF1A	3091	broad.mit.edu	37	14	62193436	62193436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	HIF1A	NM_001243084	exon5	c.A542G	p.K181R	TGAAAAAGGGTAA		288	4	0.01	292	0	0		120		305	0	0.00			
CCPG1	9236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	55669303	55669303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_020739	exon5	c.G298T	p.A100S	CACTGGCAGTTCC		150	10	0.07	240	0	0				53	3	0.06			
ZNF609	23060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	64967246	64967247	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	ZNF609	NM_015042	exon4	c.2193_2194insA	p.D731fs	GAAAGACAAAAAA		41	13	0.32	64	0	0		106		18	0	0.00			
ZNF609	23060	mdanderson.org	37	15	64967320	64967320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_015042	exon4	c.G2267A	p.G756D	AGGAAGGCAAAAG		53	3	0.06	92	0	0				24	0	0.00			
IFT140	9742	mdanderson.org	37	16	1634259	1634259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_014714	exon11	c.C1318A	p.L440M	TGCGCAGGCTGTG		43	3	0.07	47	0	0				43	0	0.00			
MAZ	4150	mdanderson.org	37	16	29818801	29818801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_002383	exon2	c.C695A	p.P232H	TGGTGCCCCTGAG		61	3	0.05	69	0	0				612	1	0.00			
LOC283922	0	bcgsc.ca	37	16	74372609	74372609	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	.	.	.	.	AAAAAGGAGCAAA		107	5	0.05	128	3	0.0234375				0	0				
PIEZO1	9780	broad.mit.edu;mdanderson.org	37	16	88800398	88800398	+	Missense_Mutation	SNP	G	G	C	rs62639697	byfrequency	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	PIEZO1	NM_001142864	exon17	c.C2245G	p.Q749E	CCTCCTGCTGCTG		59	3	0.05	74	1	0.0135135135		79		27	1	0.04			
CAMKK1	84254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	3779556	3779556	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	CAMKK1_ENST00000158166,colon,carcinoma,0,2	CAMKK1	NM_172207	exon11	c.1072delG	p.E358fs	GGCCTCGGGGGCC		94	35	0.37	105	0	0		70		26	0	0.00			
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14542810	14542810	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	POTEC,NS,carcinoma,0,1	POTEC	NM_001137671	exon1	c.C336T	p.S112S	CTTGCCGCTCCCC		245	21	0.09	481	0	0		0	1	0	0				
CELF4	56853	mdanderson.org	37	18	34846535	34846535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_020180	exon9	c.C1126A	p.L376M	GCTGCAGGGGGTC		43	3	0.07	67	0	0				1	0	0.00			
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9086806	9086808	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	CTT	CTT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	MUC16	NM_024690	exon1	c.5008_5010del	p.1670_1670del	GTAGAACTTCTTC		101	15	0.15	144	0	0		4315		0	0				
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10488908	10488908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_003331	exon3	c.C175T	p.H59Y	CAATGTGGATGCA		88	17	0.19	89	0	0				51	6	0.12			
S1PR5	53637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10624996	10624996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_030760	exon2	c.G692A	p.G231E	GCAGTCCCGGGCC		41	20	0.49	40	0	0				7	4	0.57			
CACNA1A	773	mdanderson.org	37	19	13443691	13443691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001127222	exon9	c.C1247A	p.P416H	TCAAAGGGATGCC		32	3	0.09	58	0	0				0	0				
MAP3K10	4294	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	40711055	40711055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_002446	exon4	c.G1040T	p.R347L	ACGGGCGGCCAGA		105	5	0.05	154	0	0				47	0	0.00			
SYMPK	8189	broad.mit.edu	37	19	46355581	46355581	+	Silent	SNP	G	G	T	rs371606879	alternate_allele	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	SYMPK	NM_004819	exon5	c.C288A	p.I96I	CTCCTCGATGAAG		96	3	0.03	174	0	0		104		192	0	0.00			
MYH14	79784	mdanderson.org	37	19	50728869	50728869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001077186	exon7	c.G745T	p.A249S	CTTCAGGCCAACC		38	3	0.08	55	0	0				25	0	0.00			
ANKRD36BP2	0	broad.mit.edu	37	2	89100923	89100924	+	RNA	INS	-	-	G	rs369765448	bycluster	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	.	.	.	.	TAAAAAAGATACA		9	3	0.33	9	0	0				0	0				
RANBP2	5903	mdanderson.org	37	2	109380793	109380793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_006267	exon20	c.G3798T	p.W1266C	TGTATGGCATGCC		48	3	0.06	51	0	0				62	0	0.00			
CNTNAP5	129684	mdanderson.org	37	2	125281916	125281916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	CNTNAP5,rectum,carcinoma,0,2	CNTNAP5	NM_130773	exon9	c.G1361T	p.S454I	CGGTTAGCATCAA		97	4	0.04	111	1	0.009009009		0	2	0	0				
TANK	10010	broad.mit.edu	37	2	162087615	162087615	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	TANK	NM_004180	exon7	c.C654T	p.C218C	ACTGTGCAGAGAT		233	4	0.02	332	0	0		35		31	0	0.00			
OBSL1	23363	ucsc.edu	37	2	220422605	220422605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	OBSL1	NM_001173431	exon11	c.A3730C	p.T1244P	GGCAGGTGTAGAG		32	10	0.31	27	12	0.4444444444		120		123	28	0.23			
SP100	6672	broad.mit.edu;mdanderson.org	37	2	231368922	231368922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	SP100	NM_001080391	exon21	c.A1787G	p.E596G	AAGATGAAAATAT		89	4	0.04	95	1	0.0105263158		167		4	0	0.00			
GPR35	2859	mdanderson.org	37	2	241569516	241569516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001195382	exon6	c.G240T	p.M80I	CCGCATGCAGCAG		34	3	0.09	48	0	0				9	0	0.00			
ZNRF3	84133	mdanderson.org	37	22	29439337	29439337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001206998	exon4	c.G552T	p.K184N	TGTGAAGGGTGCA		37	3	0.08	63	0	0				44	0	0.00			
.	9215	bcgsc.ca;mdanderson.org	37	22	33562812	33562812	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	.	.	.	.	GCTAAAATCAAAG		61	17	0.28	94	0	0				1	1	1.00			
CYB5R3	1727	mdanderson.org	37	22	43019864	43019864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001171660	exon8	c.C763A	p.L255M	CCTCCAGCTCAGG		52	3	0.06	90	0	0				352	0	0.00			
PIM3	415116	mdanderson.org	37	22	50356646	50356646	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001001852	exon6	c.G852T	p.L284L	GTCGCTGGATCAG		41	3	0.07	47	0	0				64	0	0.00			
PLXNB2	23654	bcgsc.ca	37	22	50719062	50719062	+	Missense_Mutation	SNP	G	G	T	rs200418278	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	PLXNB2	NM_012401	exon25	c.C4031A	p.A1344D	GCGCGGGCCGAGA		39	4	0.10	70	0	0		172		234	0	0.00			
CCDC54	84692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107097048	107097048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_032600	exon1	c.C614T	p.T205I	AGTCCACTGACCA		311	112	0.36	394	0	0				0	0				
TNIK	23043	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	170856034	170856034	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	TNIK	NM_001161564	exon15	c.G1554T	p.L518L	ATGGTACAGTGGC		182	18	0.10	250	1	0.004		313		30	8	0.27			
CLNK	116449	mdanderson.org	37	4	10567665	10567665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_052964	exon6	c.C260A	p.P87Q	CGGGCTGGTAAAA		85	4	0.05	132	0	0				0	0				
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30725848	30725848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_032457	exon1	c.A2804G	p.K935R	AGCCTAAAAAGGA		57	21	0.37	81	0	0				49	25	0.51			
FRYL	285527	broad.mit.edu	37	4	48537740	48537740	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	FRYL	NM_015030	exon48	c.C6498A	p.V2166V	GCACACGACATTG		337	5	0.01	459	0	0		242		11	0	0.00			
.	644548	bcgsc.ca	37	4	63682551	63682551	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	.	.	.	.	TGGCTACGATGGC		70	13	0.19	151	0	0				0	0				
BMP2K	55589	mdanderson.org	37	4	79792166	79792166	+	Missense_Mutation	SNP	C	C	G	rs200441916	bycluster	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	BMP2K_ENST00000502871,caecum,carcinoma,0,4	BMP2K_ENST00000502871	NM_017593	exon11	c.C1461G	p.H487Q	GCAGCACCACCAC		17	3	0.18	20	0	0		0	4	17	1	0.06			
PDLIM5	10611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	95496980	95496980	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	PDLIM5	NM_006457	exon5	c.G505C	p.V169L	GCTGCCGTCACTC		220	56	0.25	332	2	0.0060240964		76		59	15	0.25			
PDE5A	8654	mdanderson.org	37	4	120423806	120423806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001083	exon19	c.C2336A	p.A779E	AGTTCTGCTATCT		44	3	0.07	67	0	0				4	0	0.00			
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	125631497	125631497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_020337	exon2	c.C170T	p.S57F	TTCCCAGAATTCA		161	38	0.24	281	0	0				20	7	0.35			
KIAA0947	23379	mdanderson.org	37	5	5473678	5473678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_015325	exon16	c.C6230A	p.P2077Q	ATGCCCCGGTAGA		34	3	0.09	81	0	0				57	1	0.02			
SLC25A46	91137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	110097196	110097196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_138773	exon8	c.G971A	p.S324N	CTGCCAGTCTTTG		83	24	0.29	129	0	0				10	1	0.10			
PCDHB7	56129	hgsc.bcm.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T	rs374392843		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	PCDHB7,NS,carcinoma,0,4	PCDHB7	NM_018940	exon1	c.G1578T	p.A526A	GCAGGCGTTCGAG		44	3	0.07	70	1	0.0142857143		0	4	11	0	0.00			
FAT2	2196	bcgsc.ca	37	5	150917382	150917382	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	FAT2,brain,atypical_teratoid-rhabdoid_tumour,0,1	FAT2	NM_001447	exon11	c.G9165A	p.A3055A	TTCATGCGCCCCA		151	6	0.04	198	0	0		465	1	1	0	0.00			
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	154268931	154268931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_015465	exon27	c.A4309G	p.R1437G	TAAGCCTTTTGGT		99	4	0.04	141	0	0				78	0	0.00			
CPEB4	80315	broad.mit.edu	37	5	173383109	173383109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	CPEB4	NM_030627	exon10	c.G2159A	p.R720H	GTGACCGCCCTCG		90	3	0.03	131	0	0		54		3	0	0.00			
PRDM13	59336	broad.mit.edu	37	6	100061625	100061627	+	In_Frame_Del	DEL	CCG	CCG	-	rs370363311		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	CCG	CCG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	PRDM13	NM_021620	exon4	c.1114_1116del	p.372_372del	GGGGACCCGCCGC		6	4	0.67	9	0	0		65		0	0				
HBS1L	10767	mdanderson.org	37	6	135318078	135318078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_006620	exon7	c.C802A	p.H268N	CAACATGACCTAA		45	3	0.07	80	0	0				92	0	0.00			
PMS2	5395	broad.mit.edu	37	7	6017231	6017231	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	PMS2	NM_000535	exon14	c.C2433A	p.A811A	CCGGCAGGCTCTG		296	84	0.28	365	0	0		88		14	5	0.36			
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47343091	47343091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_022748	exon22	c.A2914T	p.S972C	CAGCGCTGAGGGG		37	5	0.14	42	0	0				83	16	0.19			
TPST1	8460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65705578	65705578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_003596	exon2	c.G166T	p.D56Y	GGCCTGGACCTCA		140	20	0.14	133	0	0				113	29	0.26			
AUTS2	26053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70252379	70252379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	AUTS2	NM_015570	exon18	c.T2493G	p.D831E	TGTAGATAAACGA		106	19	0.18	177	2	0.011299435		173		54	17	0.31			
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	.	.	.	.	CCGGGGTCCTTGA		90	4	0.04	156	1	0.0064102564				0	0				
STAG3L2	0	broad.mit.edu	37	7	74306639	74306639	+	RNA	SNP	C	C	G	rs76222990		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	STAG3L2	.	.	.	.	CACCAACGCTCGG		8	2	0.25	22	0	0		8		13	0	0.00			
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	91691612	91691612	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	AKAP9	NM_147185	exon24	c.5788delG	p.E1930fs	CAGATGAAAAAAC		185	29	0.16	295	0	0		788		11	0	0.00			
SMURF1	57154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	98628279	98628280	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	AT	AT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	SMURF1	NM_020429	exon19	c.2202_2203del	p.734_735del	GGACTCATATGGT		47	13	0.28	96	0	0		58		46	0	0.00			
TRPV6	55503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142570126	142570126	+	Splice_Site	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	TRPV6,NS,carcinoma,0,1	TRPV6	NM_018646	exon14	c.C1894T	p.R632W	CTCACCGCAGGAA		27	4	0.15	77	0	0		108	1	9	0	0.00			
ZNF398	57541	mdanderson.org	37	7	148851348	148851348	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_170686	exon2	c.G336T	p.R112R	GAGGCGGCTGGAG		48	3	0.06	57	0	0				19	0	0.00			
WDR86-AS1	100131176	mdanderson.org	37	7	151106405	151106405	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	.	.	.	.	GATGAGCGGGGGC		40	3	0.08	55	0	0				2	0	0.00			
RBM33	155435	mdanderson.org	37	7	155473369	155473369	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_053043	exon5	c.G334T	p.G112X	CAATCTGGAGAAC		33	3	0.09	65	0	0				48	0	0.00			
FAM83H	286077	mdanderson.org	37	8	144808833	144808833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	FAM83H,NS,carcinoma,-1,1	FAM83H	NM_198488	exon5	c.G2798A	p.R933H	CCCCTGCGCTCCG		16	2	0.13	21	0	0		-1	1	56	0	0.00			
GOLGA2	2801	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	131022893	131022893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	GOLGA2	NM_004486	exon17	c.G1528A	p.A510T	CGGCCGCCCGCTC		20	5	0.25	26	0	0		69		67	8	0.12			
.	0	bcgsc.ca	37	9	141038031	141038031	+	RNA	SNP	C	C	T	rs28468575		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	.	.	.	.	CAGGGCCGGTGTG		20	11	0.55	35	4	0.1142857143				0	0				
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	32456429	32456429	+	Missense_Mutation	SNP	C	C	T	rs146880270		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	DMD	NM_004006	exon29	c.G4000A	p.G1334R	TGACTCCGCCATC		232	94	0.41	234	1	0.0042735043		2127		24	12	0.50			
FGD1	2245	mdanderson.org	37	X	54497049	54497049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_004463	exon3	c.C626T	p.A209V	ACTGCTGCAGAAC		51	3	0.06	43	0	0				82	0	0.00			
AIFM1	9131	broad.mit.edu	37	X	129264042	129264042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	AIFM1	NM_004208	exon15	c.A1673G	p.E558G	TAGTCCTCCCCCT		189	5	0.03	155	4	0.0258064516		75		302	1	0.00			
CDR1	1038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	139866052	139866052	+	Silent	SNP	G	G	A	rs146276960		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_004065	exon1	c.C480T	p.S160S	TCTTCCGGATAAT		423	108	0.26	349	0	0	0			4	2	0.50			
MAMLD1	10046	bcgsc.ca	37	X	149639635	149639635	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	MAMLD1	NM_005491	exon3	c.A1790T	p.Q597L	AGCTGCAGCAGCA		204	8	0.04	130	1	0.0076923077		263		15	0	0.00			
GABRE	2564	broad.mit.edu	37	X	151138734	151138734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	GABRE	NM_004961	exon2	c.G197A	p.G66D	AGTTTGCCAACTC		237	6	0.03	210	0	0		141		3	0	0.00			
.	0	bcgsc.ca;mdanderson.org	37	X	152752177	152752177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	.	.	.	.	TTGACCGGCGCCG		256	48	0.19	172	1	0.0058139535				8	1	0.13			
