Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
GON4L	54856	mdanderson.org	37	1	155721600	155721600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	GON4L_ENST00000437809,lower_third,carcinoma,0,2	GON4L_ENST00000437809	NM_001037533	exon31	c.C6531A	p.F2177L	GATGTTGAAGGTC		81	4	0.05	73	0	0		0	2	153	0	0.00			
PCP4L1	654790	broad.mit.edu	37	1	161254255	161254255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	PCP4L1	NM_001102566	exon3	c.A191G	p.K64R	GGAAAAAGGATCC		392	5	0.01	396	0	0		7		5	0	0.00			
NMT2	9397	mdanderson.org	37	10	15210531	15210531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_004808	exon1	c.C81A	p.D27E	CTCATTGTCCCCG		43	4	0.09	44	0	0				15	0	0.00			
IFIT3	3437	mdanderson.org	37	10	91098885	91098885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001031683	exon2	c.G473T	p.C158F	AGGTGTGTTTTGA		36	3	0.08	45	0	0				57	0	0.00			
DOCK1	1793	mdanderson.org	37	10	129249688	129249688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001380	exon52	c.G5595T	p.Q1865H	CGTGCAGTGACGT		41	3	0.07	25	0	0				26	0	0.00			
TSPAN4	7106	mdanderson.org	37	11	864455	864455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	TSPAN4,NS,carcinoma,0,1	TSPAN4	NM_001025237	exon5	c.C274G	p.L92V	CTGCTGCTGGTGT		42	3	0.07	40	0	0		0	1	112	1	0.01			
MUC6	4588	mdanderson.org	37	11	1029349	1029349	+	Missense_Mutation	SNP	C	C	T	rs201771202	bycluster	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_005961	exon10	c.G1154A	p.R385H	ACCCAGCGGCCCA		25	2	0.08	48	0	0				0	0				
MRGPRF	116535	mdanderson.org	37	11	68773371	68773371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001098515	exon3	c.C407A	p.A136D	CTGACGGCCGGCA		17	2	0.12	30	0	0				8	0	0.00			
GAB2	9846	ucsc.edu;bcgsc.ca	37	11	77938073	77938073	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	GAB2	NM_080491	exon4	c.C645A	p.T215T	GGCTCTGGTGCCC		24	4	0.17	49	0	0		63		1	0	0.00			
ERC1	23085	broad.mit.edu	37	12	1292505	1292505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	ERC1	NM_178040	exon11	c.A2075G	p.K692R	TGAAAAAGGACTC		737	7	0.01	382	2	0.0052356021		95		48	0	0.00			
ASUN	55726	broad.mit.edu	37	12	27066606	27066606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_018164	exon14	c.G1589A	p.R530H	ATGATACGGTATT		141	4	0.03	97	0	0				250	0	0.00			
C12orf42	374470	mdanderson.org	37	12	103696285	103696285	+	Silent	SNP	C	C	T	rs180791755	bycluster;by1000genomes	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001099336	exon6	c.G684A	p.T228T	GCCGGGCGTCTGG		50	3	0.06	32	0	0	0			1	0	0.00			
.	0	broad.mit.edu	37	13	25141399	25141399	+	RNA	DEL	T	T	-	rs372505382		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	ATTGGCTTTTTTT		8	3	0.38	9	0	0				0	0				
PCDH8	5100	mdanderson.org	37	13	53420974	53420974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_002590	exon1	c.C1598A	p.T533N	CGGTAGGTGACCT		17	2	0.12	32	0	0				0	0				
PAPLN	89932	mdanderson.org	37	14	73717653	73717653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_173462	exon7	c.G504T	p.Q168H	CAAGCAGGAGGAC		48	3	0.06	40	0	0				1	0	0.00			
C14orf80	283643	mdanderson.org	37	14	105964251	105964251	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001134875	exon7	c.G888A	p.L296L	GGAGCTGCAGGCA		43	3	0.07	42	1	0.0238095238				153	0	0.00			
.	0	bcgsc.ca	37	15	30297909	30297909	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	TCAGCAGTTGGAT		31	4	0.13	42	0	0				0	0				
.	0	broad.mit.edu	37	15	30336794	30336795	+	RNA	INS	-	-	C	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	CCGAGGACCCCCC		6	2	0.33	5	0	0				0	0				
SPTBN5	51332	mdanderson.org	37	15	42147796	42147796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_016642	exon54	c.C9064T	p.R3022W	GCAGCCGCTCGAT		55	3	0.05	46	0	0				5	0	0.00			
TGM7	116179	broad.mit.edu	37	15	43571977	43571977	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	TGM7,NS,carcinoma,0,2	TGM7	NM_052955	exon10	c.G1524T	p.L508L	CAGCAGCAGCTGC		57	6	0.11	41	3	0.0731707317		86	2	0	0				
CLK3	1198	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	15	74911680	74911680	+	Missense_Mutation	SNP	G	G	T	rs183588535	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001130028	exon2	c.G587T	p.R196L	GATCTCGGTCCAG		80	4	0.05	87	0	0				102	0	0.00			
TTLL13	440307	mdanderson.org	37	15	90793911	90793911	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001029964	exon2	c.G49T	p.E17X	TATGTTGAGGAAA		90	5	0.06	69	1	0.0144927536				0	0				
.	0	broad.mit.edu	37	16	66689	66689	+	Missense_Mutation	SNP	A	A	G	rs201145257		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	ACATCAATCTCAG		11	2	0.18	9	0	0				28	0	0.00			
CBFA2T3	863	mdanderson.org	37	16	88943658	88943658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_005187	exon12	c.C1688A	p.A563D	TCACTGGCTTTCC		45	3	0.07	40	0	0				5	0	0.00			
SPEM1	374768	broad.mit.edu	37	17	7324624	7324624	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	SPEM1	NM_199339	exon3	c.A630C	p.P210P	CCCCCCACCTCCC		67	17	0.25	68	13	0.1911764706		41		0	0				
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		203	11	0.05	244	14	0.0573770492				64	29	0.45			
.	0	broad.mit.edu	37	17	20459733	20459734	+	RNA	INS	-	-	GA	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	ATATATGGAGAGA		68	8	0.12	65	0	0				0	0				
LRRC37A3	374819	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	62892947	62892947	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_199340	exon3	c.C429T	p.L143L	AACAGGGAGCCTT		695	53	0.08	643	0	0				0	0				
ABCA6	23460	mdanderson.org	37	17	67084386	67084386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_080284	exon28	c.C3620A	p.T1207N	AGCAAAGTCTGAA		53	3	0.06	53	0	0				0	0				
OGFOD3	79701	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80350394	80350396	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	GAA	GAA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_024648	exon9	c.839_841del	p.280_281del	CGAGGTGAAGAAG		112	14	0.13	94	0	0				105	0	0.00			
ROCK1	6093	mdanderson.org	37	18	18600140	18600140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_005406	exon12	c.T1333A	p.L445I	CTTTTAACTGCAT		27	3	0.11	65	0	0				17	0	0.00			
FAM108A1	81926	hgsc.bcm.edu	37	19	1881395	1881395	+	Silent	SNP	T	T	C	rs199929215	byfrequency	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	FAM108A1,NS,carcinoma,0,3	FAM108A1	NM_031213	exon2	c.A171G	p.R57R	GGAGGCTCTCAGG		14	5	0.36	14	1	0.0714285714	0.01	0	3	63	1	0.02			
SEMA6B	10501	mdanderson.org	37	19	4555021	4555021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_032108	exon8	c.C649T	p.R217C	CGGTGCGCAGGGT		56	3	0.05	76	0	0				33	0	0.00			
KANK2	25959	mdanderson.org	37	19	11303936	11303936	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_015493	exon2	c.C820A	p.R274R	AGTCCCGTTCTCG		26	2	0.08	30	0	0				8	0	0.00			
WIZ	58525	mdanderson.org	37	19	15535768	15535768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_021241	exon6	c.A1685G	p.H562R	CGCAGGTGTGCCC		45	5	0.11	45	0	0				59	0	0.00			
ABHD8	79575	mdanderson.org	37	19	17405202	17405202	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_024527	exon4	c.C1044A	p.P348P	GCCCTCGGGCCAG		45	3	0.07	44	0	0				3	0	0.00			
PGLS	25796	mdanderson.org	37	19	17622540	17622540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_012088	exon1	c.C59T	p.A20V	TGGGTGCGGCGCT		21	2	0.10	20	0	0				31	0	0.00			
MLL4	8085	mdanderson.org	37	19	36219739	36219739	+	Nonsense_Mutation	SNP	C	C	T	rs369588398	alternate_allele	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_014727	exon20	c.C4636T	p.Q1546X	AGACAGCAGGAAC		63	4	0.06	101	0	0				44	0	0.00			
LRFN1	57622	broad.mit.edu	37	19	39804795	39804795	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	LRFN1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	LRFN1	NM_020862	exon1	c.A1182C	p.A394A	CGGGGGTGCCATC		36	8	0.22	48	7	0.1458333333		59	1	3	0	0.00			
TPRX1	284355	broad.mit.edu	37	19	48305622	48305622	+	Missense_Mutation	SNP	A	A	G	rs201007421		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	TPRX1,caecum,carcinoma,0,2	TPRX1	NM_198479	exon2	c.T646C	p.S216P	GGCCTGAGATTGG		30	4	0.13	43	1	0.023255814		46	2	5	0	0.00			
HAS1	3036	mdanderson.org	37	19	52216945	52216945	+	Nonsense_Mutation	SNP	G	G	T	rs367672882	alternate_allele	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001523	exon5	c.C1472A	p.S491X	CGGCCCGAGGTGC		32	3	0.09	35	0	0				6	0	0.00			
ZNF547	284306	broad.mit.edu	37	19	57888687	57888687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	ZNF547	NM_173631	exon4	c.T343C	p.Y115H	GGACTGTACACGT		138	3	0.02	151	0	0		45		1	0	0.00			
ZNF814	730051	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	58388393	58388393	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001144989	exon2	c.A54G	p.E18E	CACATCTTCAAAA		98	5	0.05	140	0	0				28	0	0.00			
RGPD2	729857	broad.mit.edu	37	2	88125234	88125234	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	RGPD2	NM_001078170	exon1	c.A15G	p.K5K	GTAGGCTTTGCTG		71	8	0.11	66	1	0.0151515152		14		0	0				
ANKRD36BP2	0	broad.mit.edu	37	2	89104503	89104504	+	RNA	INS	-	-	C	rs149625899	bycluster;by1000genomes	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	ATTTTTTTCAGAT		11	4	0.36	10	3	0.3				0	0				
PLGLA	0	broad.mit.edu	37	2	107003270	107003270	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	AATGTTAAAAAAA		6	4	0.67	9	0	0				0	0				
ANKMY1	51281	mdanderson.org	37	2	241492364	241492364	+	Silent	SNP	G	G	A	rs202087165	by1000genomes	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_017844	exon4	c.C447T	p.Y149Y	GGTGCCGTAGCCT		56	3	0.05	60	0	0	0			5	0	0.00			
RRBP1	6238	bcgsc.ca	37	20	17639827	17639827	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	RRBP1	.	.	.	.	CCCCTCGGCCTTC		213	10	0.05	224	2	0.0089285714		157		748	9	0.01			
RRBP1	6238	bcgsc.ca	37	20	17639837	17639837	+	Missense_Mutation	SNP	C	C	T	rs113442443		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	RRBP1	.	.	.	.	TTCTTGCCCTGGT		206	12	0.06	228	4	0.0175438596		157		637	43	0.07			
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu	37	20	33345756	33345756	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	NCOA6,bladder,carcinoma,0,2	NCOA6	NM_014071	exon7	c.A795G	p.Q265Q	TTGTTGTTGCTGC		68	3	0.04	61	0	0		0	2	9	0	0.00			
DYRK1A	1859	mdanderson.org	37	21	38877888	38877888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_101395	exon11	c.C1542A	p.S514R	GTCAAGCTCAGGT		18	2	0.11	23	0	0				37	0	0.00			
LRRC66	339977	mdanderson.org	37	4	52861268	52861268	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001024611	exon4	c.G1920A	p.L640L	CCCGGACAGCCTT		53	3	0.06	87	0	0				0	0				
HERC6	55008	mdanderson.org	37	4	89338644	89338644	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_017912	exon13	c.C1626T	p.I542I	AGCCATCATCTCT		40	3	0.08	75	0	0				8	0	0.00			
FTMT	94033	mdanderson.org	37	5	121187687	121187687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_177478	exon1	c.G29T	p.R10M	TCTCCAGGCACAT		24	3	0.13	22	0	0				0	0				
BTN2A3P	54718	mdanderson.org	37	6	26428109	26428109	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	CTTTATGCCCAGC		25	4	0.16	36	0	0				0	0				
HIST1H2BJ	8970	broad.mit.edu	37	6	27100492	27100492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	HIST1H2BJ,NS,carcinoma,+1,1	HIST1H2BJ	NM_021058	exon1	c.A38G	p.K13R	GAGCCCTTTTTCG		136	4	0.03	109	0	0		21	1	5	0	0.00			
TREML2	79865	hgsc.bcm.edu	37	6	41166123	41166123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_024807	exon2	c.G100A	p.G34R	TCTCCCCTTCAAG		57	4	0.07	63	0	0				2	0	0.00			
SLC22A7	10864	mdanderson.org	37	6	43266352	43266352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_153320	exon1	c.C256T	p.P86S	GCCTATCCCCAGG		52	3	0.06	51	0	0				0	0				
HMGN3	9324	broad.mit.edu	37	6	79912054	79912054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	HMGN3	NM_001201362	exon5	c.A200G	p.K67R	TCCTGCTTTTCCT		99	4	0.04	126	0	0		8		587	0	0.00			
HTR1E	3354	hgsc.bcm.edu	37	6	87725676	87725676	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	HTR1E,NS,carcinoma,+1,4	HTR1E	NM_000865	exon2	c.G624T	p.A208A	CCACGCGGCCAAG		98	4	0.04	118	0	0		1	4	0	0				
MAD1L1	8379	mdanderson.org	37	7	1976498	1976498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_003550	exon17	c.C1632A	p.H544Q	GCTCATGTGCAGC		52	3	0.06	71	0	0				106	0	0.00			
RADIL	55698	mdanderson.org	37	7	4841526	4841526	+	Missense_Mutation	SNP	C	C	T	rs199920495	bycluster;by1000genomes	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_018059	exon12	c.G2600A	p.R867H	AGAGTACGCTCCG		71	4	0.06	81	0	0	0			17	0	0.00			
PHKG1	5260	mdanderson.org	37	7	56148879	56148879	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001258459	exon11	c.C1128A	p.R376R	GAGCCGGCGCAGA		48	3	0.06	50	0	0				0	0				
GIMAP1-GIMAP5	0	mdanderson.org	37	7	150440050	150440050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001199577	exon6	c.G1435T	p.V479F	CTCAGAGTCAAAC		56	3	0.05	69	0	0				28	0	0.00			
ANK1	286	broad.mit.edu;mdanderson.org	37	8	41575645	41575645	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	ANK1	NM_001142446	exon11	c.C1284T	p.A428A	GATCGAGGCTCCC		48	4	0.08	42	1	0.0238095238		497		13	1	0.08			
ARHGAP39	80728	mdanderson.org	37	8	145830925	145830925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_025251	exon3	c.C75A	p.N25K	CCGAGTGTTCGAC		42	3	0.07	55	0	0				22	0	0.00			
.	0	bcgsc.ca	37	9	69067877	69067877	+	RNA	SNP	C	C	G	rs7341852	bycluster	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	AAAGAGCAAAGAT		25	12	0.48	38	1	0.0263157895				8	0	0.00			
CCBL1	883	mdanderson.org	37	9	131598073	131598073	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	CCBL1,NS,carcinoma,-2,1	CCBL1	NM_001122671	exon9	c.C840T	p.C280C	CGTGGGGCAGTGG		36	3	0.08	45	1	0.0222222222		-2	1	2	0	0.00			
REXO4	57109	mdanderson.org	37	9	136277900	136277900	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_020385	exon3	c.C714A	p.G238G	GTACCCGCCGAAG		23	2	0.09	20	0	0				103	0	0.00			
TBC1D25	4943	broad.mit.edu	37	X	48418342	48418342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	TBC1D25	NM_002536	exon6	c.G1046T	p.G349V	ATGAGGGCCATGC		41	3	0.07	51	0	0		70		16	0	0.00			
TMEM185A	84548	broad.mit.edu	37	X	148690471	148690471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	TMEM185A	NM_032508	exon3	c.G266A	p.G89D	TGGATGCCCACTG		182	4	0.02	169	0	0		26		17	0	0.00			
GYG2P1	352887	hgsc.bcm.edu	37	Y	14532067	14532067	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	CACCCATGCCAGT		60	7	0.12	66	0	0				0	0				
FOLR3	2352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71850732	71850732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	TTCAAGGTCAGCA		185	49	0.26	161	0	0				2	1	0.50			
SEPHS2	22928	mdanderson.org	37	16	30456678	30456678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	AGGGGGATGACGC		44	3	0.07	36	0	0				253	1	0.00			
TSPAN10	83882	mdanderson.org	37	17	79612324	79612324	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	TSPAN10_ENST00000328585,caecum,carcinoma,0,1	TSPAN10_ENST00000328585	.	.	.	.	GGGGGGCCCCTGC		35	3	0.09	38	0	0		0	1	0	0				
MAPK8IP2	23542	mdanderson.org	37	22	51044140	51044140	+	Silent	SNP	C	C	T	rs374360769		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	GGTGCCCGGCCCT		40	3	0.08	34	0	0				48	0	0.00			
