Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PTCHD2	57540	mdanderson.org	37	1	11586864	11586864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_020780	exon13	c.G2770A	p.V924M	TTCTACGTGGCCA		31	3	0.10	33	0	0				9	0	0.00			
ESPNP	0	broad.mit.edu	37	1	17030903	17030905	+	RNA	DEL	GAG	GAG	-	rs55663095	alternate_allele	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	GAG	GAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	ATCGACGAGGAGG		7	5	0.71	11	0	0				0	0				
PI4KB	5298	mdanderson.org	37	1	151288391	151288391	+	Missense_Mutation	SNP	A	A	T	rs1752379	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_002651	exon3	c.T603A	p.D201E	ACCCACATCCTCA		99	3	0.03	73	0	0				51	0	0.00			
.	474337	bcgsc.ca	37	1	168867522	168867522	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	AAGAATCATACTG		75	6	0.08	39	0	0				0	0				
FAM5B	0	broad.mit.edu	37	1	177247722	177247722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	FAM5B	NM_021165	exon7	c.A1036G	p.R346G	CTGAAAAGGCTGC		265	5	0.02	172	1	0.0058139535		191		0	0				
PHLDA3	23612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	201437676	201437676	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	PHLDA3,colon,carcinoma,0,1	PHLDA3	NM_012396	exon1	c.240delC	p.G80fs	TCGCCGCCCCCTT		241	71	0.29	289	0	0		11		290	0	0.00			
ERO1LB	56605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236389708	236389708	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_019891	exon12	c.T913G	p.F305V	ATAAAAAGTAAAG		226	70	0.31	164	0	0				5	1	0.20			
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	131676058	131676058	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001005463	exon7	c.A610C	p.N204H	GAGGGTTGCCTGC		72	6	0.08	46	0	0				27	1	0.04			
MUC2	4583	mdanderson.org	37	11	1092971	1092971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	MUC2_ENST00000441003,NS,carcinoma,0,1	MUC2_ENST00000441003	NM_002457	exon30	c.C4790T	p.T1597I	CCCCAACACCCAC		27	3	0.11	40	0	0		0	1	0	0				
CDKN1C	1028	mdanderson.org	37	11	2906574	2906574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000076	exon1	c.G146A	p.R49H	GCCAGGCGGGCCT		24	2	0.08	46	0	0				51	0	0.00			
TTC17	55761	ucsc.edu	37	11	43465665	43465665	+	Silent	SNP	G	G	A	rs377088555	alternate_allele	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	TTC17	NM_018259	exon18	c.G2571A	p.G857G	TCCTGGGAAAAAA		151	1	0.01	167	0	0		112		63	8	0.13			
FADS1	3992	mdanderson.org	37	11	61584183	61584183	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	FADS1,brain,glioma,0,1	FADS1	NM_013402	exon1	c.C219A	p.T73T	GCGCGGGGTAGGT		42	3	0.07	88	0	0		0	1	11	0	0.00			
.	0	bcgsc.ca	37	11	62815368	62815368	+	RNA	SNP	G	G	A	rs7125680	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	GGTGCAGCATGCC		28	5	0.18	25	0	0				0	0				
DPP3	10072	mdanderson.org	37	11	66276689	66276689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_005700	exon18	c.G2181T	p.K727N	CTGGAAGGGCCCC		56	3	0.05	61	0	0				108	0	0.00			
TMPRSS13	84000	mdanderson.org	37	11	117780545	117780545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001206790	exon8	c.T1085C	p.L362P	GCAGTGAGCACCC		25	3	0.12	57	0	0				5	0	0.00			
ARHGEF12	23365	mdanderson.org	37	11	120347433	120347433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_015313	exon34	c.C3341T	p.A1114V	TGGTGGCACAGAC		82	5	0.06	53	0	0				36	0	0.00			
RBP5	0	broad.mit.edu	37	12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		12	5	0.42	6	0	0		20		2	0	0.00			
GRIN2B	2904	broad.mit.edu	37	12	13717472	13717472	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	GRIN2B,right_upper_lobe,carcinoma,-2,1	GRIN2B	NM_000834	exon13	c.C2700A	p.R900R	CAGCAGGCGCAGG		136	4	0.03	95	0	0		303	1	0	0				
RARG	5916	mdanderson.org	37	12	53609159	53609159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000966	exon5	c.C393A	p.N131K	GATACAGTTTTTG		110	5	0.05	114	1	0.0087719298				25	0	0.00			
LRCOL1	100507055	broad.mit.edu	37	12	133182784	133182786	+	RNA	DEL	CAG	CAG	-	rs112975396	alternate_allele	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	CAG	CAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001195520	exon2	c.52_54del	p.18_18del	GGACCCCAGCAGC		6	2	0.33	6	0	0				0	0				
POSTN	10631	mdanderson.org	37	13	38145583	38145583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_006475	exon18	c.C2102A	p.T701K	ACTTTTGTTAGTG		82	5	0.06	96	2	0.0208333333				207	0	0.00			
.	0	broad.mit.edu	37	14	20086237	20086237	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	TGTGTGTGGGGGG		9	5	0.56	7	0	0				0	0				
NF1P2	100419006	bcgsc.ca	37	15	22145400	22145401	+	RNA	DNP	GC	GC	TT	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	GC	GC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	ACACTGGCCAGAG		25	14	0.56	32	1	0.03125				0	0				
HERC2P10	390561	hgsc.bcm.edu	37	15	31117040	31117040	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	AAATTACCAAATG		28	13	0.46	24	0	0				0	0				
SQRDL	58472	mdanderson.org	37	15	45980603	45980603	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001271213	exon9	c.1116+1G>T	.	AAGAAGGTTTGTA		45	3	0.07	38	0	0				0	0				
MYO5A	4644	hgsc.bcm.edu	37	15	52662553	52662553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000259	exon22	c.A2879G	p.E960G	TCAGTCTCAGAGT		95	4	0.04	101	0	0				10	0	0.00			
ABCC6	368	ucsc.edu;bcgsc.ca	37	16	16251629	16251629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	ABCC6	NM_001171	exon27	c.C3773A	p.P1258H	GGCCAGGGGGGCT		39	4	0.10	40	0	0		110		3	0	0.00			
RLTPR	146206	mdanderson.org	37	16	67683413	67683413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001013838	exon20	c.G1810T	p.A604S	CTCCGGGCCCTAG		18	2	0.11	30	0	0				14	0	0.00			
RANBP10	57610	mdanderson.org	37	16	67763875	67763875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_020850	exon8	c.C964A	p.L322M	GCTCCAGCAGCCC		46	3	0.07	57	0	0				32	0	0.00			
LOC283922	0	broad.mit.edu	37	16	74372765	74372765	+	RNA	SNP	T	T	C	rs2549261	bycluster;byfrequency	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	TCCCAGTGGGGAA		107	7	0.07	79	1	0.0126582278				13	0	0.00			
ANKFY1	51479	mdanderson.org	37	17	4071123	4071123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001257999	exon25	c.C3586T	p.R1196W	AAACCCGCACAGG		80	4	0.05	90	0	0				46	0	0.00			
SENP3	26168	mdanderson.org	37	17	7466636	7466636	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_015670	exon2	c.G243A	p.E81E	AGAAGAGGAGGAG		123	5	0.04	123	0	0				127	0	0.00			
CDRT15P1	0	broad.mit.edu	37	17	13928102	13928102	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	AGGTGGCCTGCAG		459	6	0.01	469	2	0.0042643923				1	0	0.00			
RAB11FIP4	84440	mdanderson.org	37	17	29761077	29761077	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_032932	exon3	c.G273T	p.V91V	GGATGTGCTGTCG		20	2	0.10	17	0	0				7	0	0.00			
MED1	5469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37604156	37604156	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_004774	exon2	c.G27C	p.E9D	TTCTGACTCTATG		121	40	0.33	58	0	0				28	10	0.36			
AMZ2P1	0	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	TTCCACAAGTCTC		108	4	0.04	66	0	0				57	0	0.00			
UNC13D	201294	broad.mit.edu	37	17	73824882	73824882	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	UNC13D	NM_199242	exon31	c.A3137C	p.Y1046S	GCGGGGTACGTGA		36	8	0.22	51	5	0.0980392157		68		14	0	0.00			
CBX4	8535	bcgsc.ca	37	17	77809480	77809481	+	Frame_Shift_Ins	INS	-	-	CCGATATC	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	CBX4	NM_003655	exon4	c.211_212insGATATCGG	p.K71fs	CTCTCTTCCGATA		45	3	0.07	73	0	0		40		6	0	0.00			
LAMA3	3909	mdanderson.org	37	18	21393036	21393036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_198129	exon14	c.G1757T	p.C586F	GTGCTTGTGACCC		37	3	0.08	35	0	0				1	0	0.00			
SERPINB8	5271	mdanderson.org	37	18	61649058	61649058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	SERPINB8,NS,carcinoma,+1,1	SERPINB8	NM_198833	exon4	c.C410T	p.A137V	GGGTGGCAGAGAA		33	3	0.09	31	0	0		1	1	2	0	0.00			
RTTN	25914	hgsc.bcm.edu	37	18	67755229	67755229	+	Missense_Mutation	SNP	C	C	T	rs75356692	bycluster;by1000genomes	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	RTTN,NS,carcinoma,-1,1	RTTN	NM_173630	exon31	c.G4298A	p.R1433Q	ACCTCCCGGCGCA		71	3	0.04	79	0	0	0.001	-1	1	10	0	0.00			
RFX1	5989	mdanderson.org	37	19	14073848	14073848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_002918	exon20	c.G2728A	p.A910T	GATTGGCGAACTG		46	3	0.07	89	0	0				173	0	0.00			
LPHN1	22859	mdanderson.org	37	19	14262420	14262420	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001008701	exon24	c.C3690A	p.P1230P	TCCCAAGGGGTGC		20	2	0.10	30	0	0				96	0	0.00			
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42796253	42796253	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_015125	exon12	c.C2902G	p.P968A	CTGACCCCGGTGC		67	19	0.28	128	0	0				53	20	0.38			
RASIP1	54922	mdanderson.org	37	19	49224143	49224143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	RASIP1,NS,NS,0,1	RASIP1	NM_017805	exon12	c.G2804A	p.R935H	AGCCTACGGAGTT		47	3	0.06	74	0	0		0	1	35	0	0.00			
SSC5D	284297	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56011494	56011494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	SSC5D	NM_001195267	exon10	c.T2017C	p.S673P	GAGGCCTCCCGAA		70	7	0.10	109	1	0.0091743119		65		8	3	0.38			
LPIN1	23175	broad.mit.edu;mdanderson.org	37	2	11945257	11945257	+	Missense_Mutation	SNP	G	G	A	rs147550491		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	LPIN1	NM_001261428	exon18	c.G2371A	p.A791T	GGCATCGCTAAGC		95	4	0.04	91	0	0		99		10	0	0.00			
LHCGR	3973	broad.mit.edu	37	2	48982761	48982761	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	LHCGR	NM_000233	exon1	c.T50A	p.L17Q	GGCTGCAGCAGCA		27	3	0.11	31	0	0		154		0	0				
SERPINE2	5270	mdanderson.org	37	2	224866576	224866576	+	Silent	SNP	C	C	T	rs12436	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	SERPINE2_ENST00000447280,NS,carcinoma,-1,2	SERPINE2_ENST00000447280	NM_001136530	exon2	c.G78A	p.T26T	AGGCAGCGTCACA		45	3	0.07	59	0	0		-1	2	279	0	0.00			
NCOA6	23054	broad.mit.edu	37	20	33345759	33345759	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	NCOA6,NS,carcinoma,0,1	NCOA6	NM_014071	exon7	c.G792A	p.Q264Q	TTGTTGCTGCTGC		91	3	0.03	70	0	0		219	1	12	0	0.00			
PTGIS	5740	mdanderson.org	37	20	48166687	48166687	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000961	exon2	c.C114A	p.P38P	CAACCAGGGGATG		41	3	0.07	45	0	0				22	0	0.00			
CTCFL	140690	broad.mit.edu	37	20	56094264	56094264	+	Splice_Site	SNP	T	T	C	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	CTCFL	NM_001269044	exon3	c.A924G	p.T308T	TTTACCTGTGTGG		161	2	0.01	135	0	0		97		0	0				
GGT3P	0	broad.mit.edu	37	22	18769697	18769697	+	RNA	SNP	A	A	G	rs370008023		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	TCCAGGACTGCCG		745	8	0.01	727	1	0.0013755158				3	0	0.00			
DGKG	1608	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185975651	185975651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	DGKG	NM_001346	exon17	c.A1502G	p.D501G	ATGCAATCCAAAA		137	50	0.36	121	2	0.0165289256		98		0	0				
POLN	353497	mdanderson.org	37	4	2082736	2082736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_181808	exon21	c.C2336A	p.A779D	ATCATGGCCAGCT		35	3	0.09	63	0	0				0	0				
RGS12	6002	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3319740	3319740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	RGS12	NM_002926	exon2	c.C1843T	p.P615S	TTTGGTCCCCATC		199	48	0.24	257	1	0.0038910506		128		19	11	0.58			
KLHL2	11275	mdanderson.org	37	4	166220781	166220781	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001161521	exon8	c.G906T	p.R302R	GACCCGGCTGAGG		40	3	0.08	45	0	0				11	0	0.00			
TRAPPC11	60684	hgsc.bcm.edu;mdanderson.org	37	4	184589238	184589238	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	C4orf41,NS,carcinoma,0,1	C4orf41	NM_021942	exon5	c.G528A	p.P176P	ACTGCCGCACACT		100	5	0.05	78	1	0.0128205128		0	1	28	0	0.00			
CCNO	10309	broad.mit.edu	37	5	54527462	54527462	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	CCNO	NM_021147	exon3	c.T794G	p.V265G	TCTGCCACCCCCC		105	12	0.11	105	16	0.1523809524		17		9	1	0.11			
TCERG1	10915	broad.mit.edu	37	5	145836872	145836872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	TCERG1	NM_006706	exon3	c.G412T	p.V138F	ATATGGGTTGAAA		128	5	0.04	87	0	0		148		73	0	0.00			
TUBB	203068	mdanderson.org	37	6	30691668	30691668	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	TUBB,NS,carcinoma,0,1	TUBB	NM_178014	exon4	c.G829T	p.G277X	AGCCGTGGAAGCC		50	3	0.06	62	0	0		0	1	6607	5	0.00			
INTS1	26173	broad.mit.edu	37	7	1527082	1527082	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	INTS1	NM_001080453	exon20	c.G2520C	p.G840G	GGGGGGCCCCCTG		121	5	0.04	104	2	0.0192307692		145		126	2	0.02			
FKBP14	55033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	30058694	30058696	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	AGG	AGG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	FKBP14	NM_017946	exon3	c.394_396del	p.132_132del	ATCTCCAGGAGAT		157	24	0.15	65	0	0		18		59	0	0.00			
NCF1	653361	mdanderson.org	37	7	74202921	74202921	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000265	exon10	c.G924A	p.A308A	CAACGCGCACAGC		35	3	0.09	57	0	0				4	0	0.00			
CTTNBP2	83992	bcgsc.ca	37	7	117407171	117407171	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	CTTNBP2	NM_033427	exon9	c.C2838T	p.C946C	CCGATTGCACTTG		53	4	0.08	58	0	0		200		4	0	0.00			
.	0	broad.mit.edu	37	7	128217802	128217803	+	RNA	INS	-	-	GGGAGA	rs139428807	bycluster;by1000genomes	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	GAGAAGGGGGAGA		7	3	0.43	4	0	0				0	0				
MIR548T	100422849	hgsc.bcm.edu	37	7	148028714	148028714	+	RNA	SNP	C	C	G	rs62470610		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	TGGAGTCGATGGA		8	5	0.63	11	0	0				0	0				
CNTNAP2	26047	ucsc.edu	37	7	148112542	148112542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	CNTNAP2	NM_014141	exon24	c.G3830A	p.C1277Y	TCCTGTGCACCCT		31	4	0.13	53	0	0		392		20	0	0.00			
TMEM176B	28959	ucsc.edu	37	7	150489162	150489162	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	TMEM176B	NM_014020	exon6	c.C702A	p.G234G	GCTCTGGCCACAC		37	4	0.11	62	0	0		36		60	0	0.00			
ZFHX4	79776	broad.mit.edu	37	8	77617508	77617508	+	Silent	SNP	G	G	A	rs368515394		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	ZFHX4,NS,carcinoma,0,2	ZFHX4	NM_024721	exon2	c.G1185A	p.P395P	GCAGCCGCTGGGG		111	3	0.03	76	2	0.0263157895		878	2	3	0	0.00			
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	121220569	121220569	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_021110	exon11	c.T1290C	p.A430A	CACTGCTAGTGAA		88	13	0.15	45	0	0				74	15	0.20			
OPLAH	26873	broad.mit.edu	37	8	145108284	145108284	+	Missense_Mutation	SNP	G	G	T	rs186909122	by1000genomes;alternate_allele	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	OPLAH	NM_017570	exon20	c.C2699A	p.A900D	CGCAGGGCCTCCG		89	6	0.07	74	1	0.0135135135		78		13	0	0.00			
FAM120A	23196	mdanderson.org	37	9	96214208	96214208	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_014612	exon1	c.A11T	p.Q4L	GCGTGCAGGGCTT		14	3	0.21	37	0	0				2	0	0.00			
COL15A1	1306	bcgsc.ca	37	9	101798650	101798650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	COL15A1	NM_001855	exon21	c.C2381A	p.P794Q	GAGGGCCACCTGG		55	4	0.07	103	0	0		211		67	0	0.00			
TTC16	158248	mdanderson.org	37	9	130487072	130487072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_144965	exon9	c.G1155T	p.E385D	TGCCGAGGCGGAC		45	3	0.07	91	0	0				0	0				
FPGS	2356	mdanderson.org	37	9	130572100	130572100	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_004957	exon12	c.G1198T	p.E400X	GGCCGCGAGAGGC		9	2	0.22	19	0	0				12	0	0.00			
SEC16A	9919	bcgsc.ca	37	9	139355646	139355646	+	Silent	SNP	G	G	A	rs375805476		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	SEC16A	NM_014866	exon13	c.C4974T	p.H1658H	TCGGGCGTGTGTC		59	4	0.07	99	0	0		249		57	0	0.00			
FAM157B	0	broad.mit.edu	37	9	141124391	141124392	+	RNA	DEL	TG	TG	-	rs367820400	alternate_allele	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	GTGTTTTGTTTTT		91	13	0.14	47	0	0				0	0				
G6PD	2539	mdanderson.org	37	X	153762708	153762708	+	Silent	SNP	G	G	T	rs80149725	bycluster	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000402	exon6	c.C579A	p.G193G	GTTCCAGCCTCTG		30	3	0.10	41	0	0				207	1	0.00			
ZFY	7544	mdanderson.org	37	Y	2829680	2829680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_003411	exon3	c.G627T	p.M209I	CCTAATGATTTCG		16	2	0.13	27	1	0.037037037				13	0	0.00			
