Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
SLC2A7	155184	mdanderson.org	37	1	9074853	9074853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	SLC2A7,NS,carcinoma,+2,1	SLC2A7	NM_207420	exon7	c.C790A	p.R264S	CGGCGCGCTCGGC		33	3	0.09	38	2	0.0526315789		2	1	0	0				
AHDC1	27245	mdanderson.org	37	1	27878462	27878462	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001029882	exon6	c.C165T	p.H55H	GAAGGCGTGGGTG		26	2	0.08	41	0	0				5	0	0.00			
WDR65	149465	mdanderson.org	37	1	43652471	43652471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_152498	exon6	c.G1063T	p.A355S	CTGGTTGCCAGCA		44	3	0.07	50	0	0				2	0	0.00			
TGFBR3	7049	hgsc.bcm.edu	37	1	92163669	92163669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_003243	exon15	c.A2306G	p.K769R	GGTTCCTTCATGC		87	4	0.05	122	0	0				14	0	0.00			
NBPF10	100132406	broad.mit.edu	37	1	145293269	145293269	+	Splice_Site	SNP	G	G	A	rs75226570		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	NBPF10	.	.	.	.	ACAACAGTAAGTT		31	5	0.16	29	1	0.0344827586		221		1	0	0.00			
HORMAD1	84072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150680868	150680868	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_032132	exon9	c.C411T	p.N137N	AGATTCGTTGCTT		87	37	0.43	105	0	0				0	0				
NPR1	4881	mdanderson.org	37	1	153651756	153651756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_000906	exon1	c.G172T	p.A58S	GGACCCGCCGTGG		10	2	0.20	15	0	0				1	0	0.00			
ILDR2	387597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166904678	166904678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_199351	exon6	c.C740T	p.P247L	GAGGGAGGGTACC		68	18	0.26	74	0	0				0	0				
IARS2	55699	broad.mit.edu	37	1	220320874	220320874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	IARS2	NM_018060	exon23	c.T2936C	p.V979A	TAATTGTCATGCC		96	3	0.03	107	0	0		106		344	0	0.00			
AIDA	64853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	222849452	222849454	+	In_Frame_Del	DEL	GTA	GTA	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	GTA	GTA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	AIDA	NM_022831	exon7	c.568_570del	p.190_190del	CTAACTGTAATAT		250	90	0.36	279	0	0		23		14	0	0.00			
ZNF672	79894	mdanderson.org	37	1	249142349	249142349	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_024836	exon4	c.C876T	p.F292F	GGGTTTCGGGCAG		10	2	0.20	13	0	0				54	0	0.00			
ALOX5	240	broad.mit.edu;bcgsc.ca	37	10	45935962	45935962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	ALOX5	NM_001256153	exon8	c.C1066T	p.R356C	TGGGTGCGTTCCA		92	6	0.07	149	1	0.0067114094		88		32	0	0.00			
JMJD1C	221037	mdanderson.org	37	10	64928259	64928259	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_032776	exon25	c.C7469A	p.S2490X	TGAAATGACTCTA		45	3	0.07	102	0	0				60	0	0.00			
DLG5	9231	mdanderson.org	37	10	79581756	79581756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_004747	exon15	c.C2486A	p.A829D	TTATGAGCCTGGA		45	3	0.07	57	0	0				55	0	0.00			
ITPRIP	85450	mdanderson.org	37	10	106075100	106075100	+	Missense_Mutation	SNP	C	C	T	rs150063098	bycluster;by1000genomes	TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001272013	exon2	c.G710A	p.R237H	CCCTGGCGATCCA		42	3	0.07	62	0	0	0			7	0	0.00			
OR6A2	8590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6816325	6816325	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_003696	exon1	c.C615T	p.F205F	CAGGATGAAATCT		56	29	0.52	42	0	0				0	0				
LMO1	4004	mdanderson.org	37	11	8252027	8252027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_002315	exon2	c.C50A	p.P17H	CCTTTGGGCTGGA		49	3	0.06	43	0	0				0	0				
TRIM44	54765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	35684815	35684815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_017583	exon1	c.C156A	p.F52L	GAAGTTCCTCAGT		51	17	0.33	44	0	0				41	8	0.20			
RTN4RL2	349667	mdanderson.org	37	11	57244302	57244302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_178570	exon3	c.C1181G	p.P394R	CGCCCCCGGACTC		20	3	0.15	13	0	0				5	0	0.00			
DAK	26007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61111415	61111415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_015533	exon12	c.C1070A	p.P357H	CCGAGCCCCAGGA		32	15	0.47	25	0	0				102	68	0.67			
CHRM1	1128	mdanderson.org	37	11	62677783	62677783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_000738	exon2	c.C790T	p.R264W	GGGCCCGGCAGCA		51	4	0.08	41	0	0				0	0				
ANO1	55107	broad.mit.edu	37	11	69951865	69951865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	ANO1_ENST00000355303,NS,carcinoma,0,2	ANO1	NM_018043	exon5	c.T718C	p.F240L	GATTCCTTTTTCG		118	3	0.03	145	0	0		156	2	1	0	0.00			
MAML2	84441	broad.mit.edu;mdanderson.org	37	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250	bycluster	TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT		74	4	0.05	63	1	0.0158730159		94	2	12	0	0.00			
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105797664	105797664	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001077243	exon13	c.G2045C	p.R682T	TCTTCAGAGTAAG		88	27	0.31	96	0	0				0	0				
BCO2	83875	mdanderson.org	37	11	112050195	112050195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001256398	exon2	c.G283T	p.G95W	GAGTTTGGGAAGG		41	3	0.07	58	0	0				1	0	0.00			
DSCAML1	57453	mdanderson.org	37	11	117376428	117376428	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_020693	exon9	c.C1983A	p.P661P	TTCGAAGGGCTGG		15	3	0.20	20	0	0				15	0	0.00			
RBP5	0	broad.mit.edu	37	12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		7	2	0.29	7	0	0		20		35	0	0.00			
UTP20	27340	mdanderson.org	37	12	101763632	101763632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_014503	exon49	c.G6518T	p.R2173M	CCGCCAGGGGCCA		46	3	0.07	57	0	0				35	0	0.00			
RPLP0	6175	hgsc.bcm.edu;bcgsc.ca	37	12	120634676	120634690	+	In_Frame_Del	DEL	GTGGCAGCAGCCACA	GTGGCAGCAGCCACA	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	GTGGCAGCAGCCACA	GTGGCAGCAGCCACA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	RPLP0	NM_053275	exon8	c.841_855del	p.281_285del	GCTGTGGTGGCAG		211	59	0.28	225	0	0		27		4632	0	0.00			
LAMP1	3916	mdanderson.org	37	13	113965084	113965084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_005561	exon4	c.G464T	p.C155F	ACAGATGTGTTAG		38	3	0.08	57	0	0				522	0	0.00			
RPGRIP1	57096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21798426	21798426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_020366	exon19	c.T3118C	p.W1040R	ACTGAGTGGAAGT		35	16	0.46	50	0	0				0	0				
PRKCH	5583	mdanderson.org	37	14	62016448	62016448	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_006255	exon14	c.G1951T	p.E651X	ATAAAGGAAGAGC		27	3	0.11	64	0	0				11	0	0.00			
PLEKHH1	57475	mdanderson.org	37	14	68024067	68024067	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_020715	exon4	c.G271T	p.E91X	TACCAAGAATTGC		33	3	0.09	39	0	0				17	0	0.00			
ZDHHC22	283576	broad.mit.edu	37	14	77600225	77600225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	ZDHHC22	NM_174976	exon3	c.C593A	p.A198D	GCGCAGGCCAGGC		72	6	0.08	87	0	0		30		0	0				
DLK1	8788	ucsc.edu;bcgsc.ca	37	14	101195284	101195284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	DLK1	NM_003836	exon3	c.G143A	p.G48D	AGCCTGGCTGGCA		36	4	0.11	42	0	0		57		13	0	0.00			
HERC2P9	0	broad.mit.edu	37	15	28929626	28929634	+	RNA	DEL	GAAGAGCGG	GAAGAGCGG	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	GAAGAGCGG	GAAGAGCGG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	.	.	.	.	GACTGTGAAGAGC		7	2	0.29	7	0	0				50	0	0.00			
.	388112	bcgsc.ca	37	15	35377147	35377147	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	.	.	.	.	GGAGGAAGGAAGA		92	19	0.21	82	2	0.0243902439				0	0				
PPP1R14D	54866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	41108371	41108371	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001130143	exon3	c.G452A	p.W151X	TACCTCCAGCTGA		68	26	0.38	89	0	0				0	0				
CCDC64B	146439	mdanderson.org	37	16	3080740	3080740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001103175	exon3	c.C572A	p.A191D	GCTCCAGCCAGTG		42	3	0.07	42	0	0				21	0	0.00			
LOC100271836	0	broad.mit.edu	37	16	21469994	21469994	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	.	.	.	.	TACATTAAAAAAA		60	8	0.13	40	0	0				0	0				
PKD1L2	114780	broad.mit.edu	37	16	81155069	81155069	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	PKD1L2	.	.	.	.	CATCTCAAAAAAA		12	3	0.25	11	0	0		361		0	0				
KDM6B	23135	mdanderson.org	37	17	7751802	7751802	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	KDM6B,NS,carcinoma,+2,1	KDM6B	NM_001080424	exon11	c.G2196T	p.L732L	ATCTCTGCAGTCT		29	3	0.10	46	0	0		2	1	32	0	0.00			
MRM1	79922	mdanderson.org	37	17	34958334	34958334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_024864	exon1	c.G95T	p.G32V	CTGGTGGGGAGGA		22	3	0.14	33	0	0				35	0	0.00			
HEXIM2	124790	mdanderson.org	37	17	43246847	43246847	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_144608	exon4	c.A532T	p.S178C	GGGGACAGTGATG		41	3	0.07	80	0	0				56	0	0.00			
AP3D1	8943	mdanderson.org	37	19	2102188	2102188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001261826	exon32	c.C3632A	p.T1211K	GCCAGCGTCGCCT		44	3	0.07	64	0	0				431	0	0.00			
DOHH	83475	mdanderson.org	37	19	3491805	3491805	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001145165	exon5	c.G594A	p.L198L	ACAGTGCAGACCT		25	3	0.12	45	0	0				44	0	0.00			
TBXA2R	6915	mdanderson.org	37	19	3600390	3600390	+	Silent	SNP	G	G	T	rs5745	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001060	exon2	c.C243A	p.T81T	GGTACCGGTCACC		48	3	0.06	57	0	0				2	0	0.00			
CD97	976	mdanderson.org	37	19	14512474	14512474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_078481	exon11	c.T1085C	p.L362P	TGACCCTGATGAT		44	3	0.07	71	0	0				30	0	0.00			
ZNF253	56242	broad.mit.edu	37	19	20003204	20003204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	ZNF253	NM_021047	exon4	c.T1148C	p.L383P	CAACCCTTTTTTC		78	3	0.04	124	1	0.0080645161		99		20	0	0.00			
CAPNS1	826	bcgsc.ca	37	19	36632054	36632054	+	Silent	SNP	C	C	T	rs17879825		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	CAPNS1	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		104	8	0.08	139	2	0.0143884892		19		3	0	0.00			
FCGBP	8857	mdanderson.org	37	19	40433368	40433368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	FCGBP,colon,carcinoma,0,1	FCGBP	NM_003890	exon2	c.C901T	p.P301S	AGGATGGCCGGAC		31	3	0.10	32	0	0		0	1	3	0	0.00			
HSD17B14	51171	mdanderson.org	37	19	49337583	49337583	+	Missense_Mutation	SNP	G	G	A	rs11547571	alternate_allele	TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_016246	exon3	c.C160T	p.P54S	CTCCAGGGAGCTC		36	3	0.08	41	0	0				233	0	0.00			
SIGLEC10	89790	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51919248	51919248	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	SIGLEC10	NM_001171157	exon5	c.C928T	p.L310L	CGGGCAGCTCCAG		82	13	0.16	112	0	0		112		6	0	0.00			
ZNF320	162967	mdanderson.org	37	19	53384632	53384632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_207333	exon4	c.G747T	p.E249D	GCCACACTCATTA		47	3	0.06	86	1	0.011627907				20	0	0.00			
ZNF772	400720	hgsc.bcm.edu;mdanderson.org	37	19	57984888	57984888	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001024596	exon5	c.C1224A	p.C408X	TGCGATGCACTCA		65	15	0.23	88	0	0				1	0	0.00			
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24080341	24080341	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001242338	exon13	c.T1512G	p.F504L	TTCATCAAAAAAT		437	134	0.31	371	0	0				1	0	0.00			
USP39	10713	mdanderson.org	37	2	85866488	85866488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001256725	exon9	c.G1258T	p.A420S	ATCCTGGCTAAGT		55	4	0.07	60	0	0				431	0	0.00			
.	400986	broad.mit.edu	37	2	96646519	96646519	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	ENSG00000174501,NS,carcinoma,0,2	.	.	.	.	.	ACAGCATGTATGA		160	6	0.04	157	0	0			2	0	0				
PLEKHA3	65977	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179355457	179355467	+	Frame_Shift_Del	DEL	AATGCAGCTGA	AATGCAGCTGA	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	AATGCAGCTGA	AATGCAGCTGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	PLEKHA3	NM_019091	exon3	c.228_238del	p.76_80del	GCAGTGAATGCAG		162	48	0.30	228	0	0		25		10	0	0.00			
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220416900	220416900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	OBSL1_ENST00000404537,NS,carcinoma,0,1	OBSL1_ENST00000404537	NM_015311	exon19	c.G5347A	p.E1783K	CGTCCTCGGCGCG		187	76	0.41	239	0	0		0	1	10	4	0.40			
MACROD2	140733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13982939	13982939	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_080676	exon2	c.T52G	p.L18V	GAACGTTTATTGA		76	15	0.20	72	0	0				1	0	0.00			
LAMA5	3911	ucsc.edu;bcgsc.ca	37	20	60892038	60892038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	LAMA5	NM_005560	exon56	c.C7553T	p.A2518V	TCGATGGCCCTCT		28	4	0.14	46	0	0		268		130	0	0.00			
ZNF512B	57473	mdanderson.org	37	20	62594010	62594010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_020713	exon13	c.C2093T	p.A698V	TCCTCCGCTATCT		38	3	0.08	49	0	0				49	0	0.00			
BAGE	85319	broad.mit.edu	37	21	11058603	11058603	+	RNA	DEL	G	G	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	.	.	.	.	CCTAAAGATTTTT		12	5	0.42	6	0	0				0	0				
.	0	broad.mit.edu	37	22	18842615	18842615	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	.	.	.	.	TATTTATTTTAGA		6	2	0.33	5	0	0				0	0				
.	0	broad.mit.edu	37	22	20976583	20976584	+	RNA	INS	-	-	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	.	.	.	.	TTTGCCTAAAAAA		7	4	0.57	4	0	0				0	0				
VPREB3	29802	mdanderson.org	37	22	24095309	24095309	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_013378	exon2	c.C126A	p.L42L	GGGGCTGAGCGTG		43	3	0.07	55	0	0				1	0	0.00			
SLC5A4	6527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32628901	32628901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_014227	exon9	c.C1006T	p.R336C	GGATGCGGCTGAT		144	51	0.35	159	0	0				0	0				
ADSL	158	mdanderson.org	37	22	40759064	40759064	+	Missense_Mutation	SNP	G	G	A	rs370851726		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	ADSL_ENST00000216194,NS,carcinoma,0,2	ADSL_ENST00000216194	NM_001123378	exon10	c.G1090A	p.V364M	TTGGTCGTGTACC		46	3	0.07	63	0	0		0	2	493	0	0.00			
DLEC1	9940	mdanderson.org	37	3	38103804	38103804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_007335	exon4	c.G818A	p.S273N	TGGACAGCCTGAC		42	3	0.07	41	0	0				4	0	0.00			
GMPPB	29925	mdanderson.org	37	3	49759234	49759234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_013334	exon8	c.C1115A	p.P372H	TTGTGGGGCAGCA		40	3	0.08	41	0	0				208	0	0.00			
GPR78	27201	mdanderson.org	37	4	8582800	8582800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_080819	exon1	c.G91T	p.A31S	TGTTGCGCCTACA		26	3	0.12	27	1	0.037037037				19	0	0.00			
BOD1L1	259282	mdanderson.org	37	4	13629060	13629060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_148894	exon1	c.C152A	p.P51Q	AGCTGCGGGTCCC		19	3	0.16	19	0	0				0	0				
.	0	bcgsc.ca	37	4	49553004	49553004	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	.	.	.	.	AGCAGTTAAACAA		72	10	0.14	86	2	0.023255814				0	0				
KIAA0947	23379	mdanderson.org	37	5	5464309	5464309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_015325	exon13	c.T4862C	p.L1621P	ACACACTGAGTAA		34	3	0.09	43	0	0				27	0	0.00			
AMACR	23600	broad.mit.edu	37	5	34004802	34004802	+	Silent	SNP	C	C	A	rs368427062	alternate_allele	TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	AMACR	NM_014324	exon3	c.G429T	p.P143P	GGCATACGGATTC		376	5	0.01	483	0	0		38		33	0	0.00			
FEM1C	56929	mdanderson.org	37	5	114860256	114860256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_020177	exon3	c.G1603A	p.A535T	GAGCAGCGATATG		68	4	0.06	71	0	0				21	0	0.00			
PCDHGA12	26025	mdanderson.org	37	5	140812465	140812465	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_003735	exon1	c.G2139A	p.A713A	GCTGGCGCTCAGG		71	4	0.06	103	0	0				1	0	0.00			
DPCR1	135656	mdanderson.org	37	6	30919170	30919170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_080870	exon2	c.T2929C	p.S977P	CCATCCTCAGCAG		43	3	0.07	59	0	0				2	0	0.00			
HSP90AB1	3326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	44218796	44218798	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	AGA	AGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	HSP90AB1	NM_001271969	exon7	c.968_970del	p.323_324del	TTCTGTAGAAGGT		109	45	0.41	94	0	0		83		3495	0	0.00			
TMEM184A	202915	mdanderson.org	37	7	1586698	1586698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001097620	exon9	c.G1132A	p.A378T	GCGTGGCCTGCTG		39	3	0.08	27	0	0				23	0	0.00			
LRCH4	4034	mdanderson.org	37	7	100174944	100174944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_002319	exon11	c.G1247A	p.R416Q	TGCCGCCGTTCCC		11	2	0.18	14	1	0.0714285714				101	0	0.00			
ING3	54556	broad.mit.edu;mdanderson.org	37	7	120609078	120609078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	ING3,NS,carcinoma,0,1	ING3	NM_019071	exon9	c.G728T	p.R243L	AGGGACGAAGAAC		81	4	0.05	60	0	0		36	1	35	0	0.00			
DLGAP2	9228	mdanderson.org	37	8	1626714	1626714	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_004745	exon9	c.C2383T	p.L795L	AAGCTGCTGCACG		22	3	0.14	48	0	0				0	0				
FAM66E	0	broad.mit.edu	37	8	7829133	7829134	+	RNA	DEL	TG	TG	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	.	.	.	.	TGTGTTTGTGTGT		10	3	0.30	25	2	0.08				0	0				
MFHAS1	9258	bcgsc.ca	37	8	8750409	8750409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	MFHAS1	NM_004225	exon1	c.C160A	p.P54T	GCTGGGGGGAGGC		41	4	0.10	60	0	0		58		2	0	0.00			
GSR	2936	mdanderson.org	37	8	30539555	30539555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_000637	exon11	c.C1177A	p.L393I	GGGCAAGTTTTCG		45	3	0.07	54	0	0				115	0	0.00			
TEX15	56154	mdanderson.org	37	8	30704648	30704648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_031271	exon1	c.C1886A	p.S629Y	TCAGAAGAACAAG		40	3	0.08	91	0	0				0	0				
RGS22	26166	broad.mit.edu	37	8	100990176	100990177	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	RGS22	NM_015668	exon23	c.3488_3489insC	p.L1163fs	ACTGCCAATTTTT		368	18	0.05	395	1	0.0025316456		319		1	0	0.00			
FBXO10	26267	broad.mit.edu	37	9	37516034	37516034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	FBXO10,NS,carcinoma,0,1	FBXO10	NM_012166	exon10	c.C2563T	p.R855W	GGCCCCGCACGGC		116	4	0.03	132	0	0		75	1	28	0	0.00			
C9orf84	158401	bcgsc.ca;mdanderson.org	37	9	114480523	114480523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	C9orf84	NM_173521	exon14	c.T1985C	p.L662S	AGATGTAAGAGAG		41	4	0.10	74	0	0		207		0	0				
CDK5RAP2	55755	mdanderson.org	37	9	123215780	123215780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_018249	exon21	c.C2747A	p.P916H	CACCCAGGCACCC		45	4	0.09	53	0	0				48	0	0.00			
ENTPD8	377841	mdanderson.org	37	9	140329512	140329512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001033113	exon10	c.C1342A	p.L448M	CGGTCAGGTTCAG		42	3	0.07	32	0	0				3	0	0.00			
RNR1	6052	hgsc.bcm.edu	37	MT	983	983	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	.	.	.	.	AACTCACCTGAGT		20	12	0.60	39	0	0				0	0				
AKAP17A	8227	mdanderson.org	37	X	1719834	1719834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_005088	exon5	c.G1435T	p.V479L	GGCTGTGTGAGCG		19	2	0.11	39	0	0				86	0	0.00			
TAB3	257397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30870899	30870899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_152787	exon7	c.C1706T	p.P569L	ACCGTAGGGATCG		60	9	0.15	40	0	0				15	1	0.07			
OPHN1	4983	mdanderson.org	37	X	67333029	67333029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_002547	exon17	c.G1414A	p.A472T	TGGCAGCAGAGAC		32	3	0.09	26	0	0				2	0	0.00			
KIAA2022	340533	broad.mit.edu	37	X	73962573	73962573	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	KIAA2022	NM_001008537	exon3	c.1819delT	p.S607fs	TTTGGGAAAAAGG		128	7	0.05	87	0	0		262		0	0				
ZFY	7544	mdanderson.org	37	Y	2829598	2829598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_003411	exon3	c.C545T	p.A182V	ACTGTGCCCCTGA		35	3	0.09	37	0	0				9	0	0.00			
