Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PGD	5226	mdanderson.org	37	1	10459762	10459762	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_002631	exon2	c.84+1G>T	.	TTTGTGGTAAGCG		37	3	0.08	17	0	0				0	0				
HTR1D	3352	mdanderson.org	37	1	23520067	23520067	+	Missense_Mutation	SNP	G	G	T	rs148842291	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_000864	exon1	c.C646A	p.L216I	CATATAGGATGAT		47	3	0.06	64	0	0				0	0				
NCDN	23154	mdanderson.org	37	1	36026280	36026280	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_014284	exon3	c.C528T	p.G176G	TGGTGGCACCGTG		45	3	0.07	45	0	0				37	0	0.00			
CMPK1	51727	mdanderson.org	37	1	47840594	47840594	+	Missense_Mutation	SNP	G	G	A	rs149887048		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_016308	exon4	c.G485A	p.R162Q	TTGAACGATGTCT		54	3	0.06	60	0	0	0			219	0	0.00			
ABCD3	5825	mdanderson.org	37	1	94980702	94980702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_002858	exon22	c.G1846T	p.V616F	TATTAGGTTGGCA		40	3	0.08	49	0	0				46	0	0.00			
.	0	broad.mit.edu	37	1	143392853	143392853	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	.	.	.	.	CTCTCATTTTTTT		7	3	0.43	6	0	0				0	0				
ETV3	2117	broad.mit.edu	37	1	157095428	157095428	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	ETV3	NM_001145312	exon5	c.T744C	p.A248A	AGAGACAGCGAAG		148	4	0.03	139	0	0		50		16	0	0.00			
SPTA1	6708	broad.mit.edu	37	1	158607904	158607904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	SPTA1	NM_003126	exon36	c.C5108A	p.A1703D	TGTGCAGCTGCCA		111	5	0.05	92	0	0		720		0	0				
VSIG8	391123	mdanderson.org	37	1	159824642	159824642	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001013661	exon7	c.C1146T	p.C382C	CGCTTCGCAGGCG		16	2	0.13	9	0	0				0	0				
MPP7	143098	bcgsc.ca	37	10	28438946	28438946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	MPP7	NM_173496	exon6	c.C199A	p.P67T	GAATGGGCACCGG		23	4	0.17	49	0	0		60		7	0	0.00			
EPC1	80314	mdanderson.org	37	10	32576132	32576132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001272004	exon7	c.C1046T	p.A349V	GCAGCGGCAGACG		39	3	0.08	56	0	0				40	0	0.00			
ZMIZ1	57178	mdanderson.org	37	10	81067288	81067288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_020338	exon23	c.C2795T	p.A932V	ACATGGCCGCCCT		49	3	0.06	58	0	0				61	0	0.00			
SLIT1	6585	broad.mit.edu	37	10	98781011	98781011	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	SLIT1	NM_003061	exon26	c.C2742A	p.C914X	ACCTTGGCATTCA		122	4	0.03	164	0	0		154		0	0				
PSD	5662	mdanderson.org	37	10	104171931	104171931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	PSD_ENST00000020673,NS,carcinoma,+1,2	PSD_ENST00000020673	NM_001270965	exon8	c.C1802A	p.T601K	ATGCCCGTGAAGA		54	3	0.06	98	0	0		1	2	0	0				
WDR96	80217	mdanderson.org	37	10	105932290	105932290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_025145	exon20	c.C2464A	p.L822M	TATTCAGAATCTG		49	3	0.06	88	0	0				0	0				
TUB	7275	mdanderson.org	37	11	8118340	8118340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_003320	exon7	c.G839T	p.R280M	CTAGCAGGAAGTC		38	3	0.08	43	0	0				13	0	0.00			
MS4A15	219995	mdanderson.org	37	11	60531240	60531240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001098835	exon2	c.G34T	p.V12F	GTGTTTGTTGTCA		47	3	0.06	63	0	0				0	0				
C1R	715	broad.mit.edu	37	12	7188347	7188347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	C1R	.	.	.	.	CGGATGGGGTGAT		204	6	0.03	92	0	0		49		2165	1	0.00			
PPHLN1	51535	mdanderson.org	37	12	42729726	42729726	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_201440	exon3	c.G43T	p.E15X	CGATATGAATATG		47	3	0.06	70	0	0				50	0	0.00			
STAC3	246329	broad.mit.edu	37	12	57642942	57642942	+	Silent	SNP	C	C	T	rs143709026		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	STAC3,caecum,carcinoma,0,1	STAC3	NM_145064	exon3	c.G216A	p.E72E	CTCCTCCTCTTCT		45	3	0.07	48	0	0		32	1	2	0	0.00			
NAV3	89795	broad.mit.edu	37	12	78574724	78574724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	NAV3,caecum,carcinoma,+1,1	NAV3	NM_014903	exon29	c.G5525T	p.R1842L	CTACTCGGCCACC		174	5	0.03	167	0	0		506	1	10	0	0.00			
KDM2B	84678	mdanderson.org	37	12	121878619	121878619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_032590	exon21	c.G3610A	p.G1204S	ACTCACCTGGCCT		55	3	0.05	47	0	0				49	0	0.00			
BRI3BP	140707	broad.mit.edu	37	12	125478382	125478384	+	In_Frame_Del	DEL	CTG	CTG	-	rs374894130		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	CTG	CTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	BRI3BP	NM_080626	exon1	c.46_48del	p.16_16del	GGGCTCCTGCTGC		6	2	0.33	14	0	0		18		0	0				
IPO5	3843	bcgsc.ca;mdanderson.org	37	13	98634777	98634777	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	IPO5	NM_002271	exon5	c.A165G	p.P55P	TATCCCAGGCCAG		61	5	0.08	79	0	0		90		47	0	0.00			
PNN	5411	mdanderson.org	37	14	39644508	39644508	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_002687	exon1	c.C25T	p.Q9X	ACTTTGCAGGAAC		52	3	0.06	67	0	0				61	0	0.00			
DCAF5	8816	mdanderson.org	37	14	69521081	69521081	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	DCAF5,bladder,carcinoma,-1,1	DCAF5	NM_003861	exon9	c.T2322C	p.P774P	TTCAAAAGGGTGC		47	3	0.06	45	0	0		-1	1	76	0	0.00			
ACOT2	10965	broad.mit.edu	37	14	74041690	74041690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	ACOT2	NM_006821	exon3	c.G925T	p.G309C	CTGAAGGGCATCA		324	4	0.01	350	1	0.0028571429		24		155	0	0.00			
FAN1	22909	mdanderson.org	37	15	31217994	31217994	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_014967	exon10	c.G2340T	p.V780V	TCAGGTGACCATC		38	3	0.08	35	0	0				21	0	0.00			
EIF2AK4	440275	mdanderson.org	37	15	40268993	40268993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001013703	exon12	c.G2197T	p.D733Y	AGCGATGACGAGG		35	3	0.09	30	0	0				21	0	0.00			
C15orf61	145853	mdanderson.org	37	15	67813654	67813654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001143936	exon1	c.G68T	p.R23L	CCTCGCGCGCCGC		13	2	0.15	8	0	0				3	0	0.00			
CSK	1445	mdanderson.org	37	15	75091663	75091663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_004383	exon5	c.C293T	p.P98L	TGTACCCGCCGGA		42	3	0.07	46	0	0				132	0	0.00			
POLG	5428	mdanderson.org	37	15	89876861	89876861	+	Missense_Mutation	SNP	C	C	T	rs74382477	bycluster	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001126131	exon2	c.G125A	p.R42Q	TGCTGCCGCCGCC		19	5	0.26	17	0	0				13	0	0.00			
ADAMTS17	170691	broad.mit.edu;mdanderson.org	37	15	100882053	100882053	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	ADAMTS17	NM_139057	exon1	c.C52G	p.L18V	AAACCAGCAGCAG		48	3	0.06	47	0	0		127		5	0	0.00			
TMEM8A	58986	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	422631	422631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	TMEM8A	NM_021259	exon12	c.G1999A	p.V667M	TGATCACGAAGGC		20	4	0.20	37	0	0		49		70	27	0.39			
THAP11	57215	mdanderson.org	37	16	67876485	67876485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_020457	exon1	c.G28T	p.G10C	GTGCCAGGCTGCT		44	3	0.07	43	0	0				25	0	0.00			
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3937397	3937397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_015113	exon40	c.C6496A	p.L2166M	CAAACAGGTTGTG		150	15	0.10	124	0	0				24	3	0.13			
DHRS7C	201140	broad.mit.edu;mdanderson.org	37	17	9674864	9674864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	DHRS7C	NM_001220493	exon6	c.T880C	p.F294L	CGAAAAAGAACTC		80	4	0.05	54	0	0		34		1	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		203	9	0.04	211	8	0.0379146919				31	19	0.61			
.	201288	bcgsc.ca	37	17	18404316	18404316	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	.	.	.	.	GAGGATGGGAGGG		68	18	0.26	62	0	0				0	0				
ARMC7	79637	mdanderson.org	37	17	73106427	73106427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_024585	exon1	c.G44T	p.G15V	GGCTGGGATACCT		65	4	0.06	66	0	0				9	0	0.00			
TBCD	6904	mdanderson.org	37	17	80887305	80887305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_005993	exon32	c.G2920T	p.G974W	CTCCTTGGGCTGC		47	3	0.06	55	0	0				179	0	0.00			
.	0	bcgsc.ca	37	18	1927980	1927980	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	.	.	.	.	ATTAAAATGAACA		13	3	0.23	22	0	0				0	0				
MEX3C	51320	mdanderson.org	37	18	48703101	48703101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_016626	exon2	c.C1600A	p.R534S	CTCTGCGCTGAGT		61	4	0.07	99	0	0				22	0	0.00			
C19orf26	255057	mdanderson.org	37	19	1236073	1236073	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_152769	exon2	c.A27G	p.T9T	GGCGGCTGTGGCC		15	2	0.13	14	0	0				1	0	0.00			
PDE4A	5141	mdanderson.org	37	19	10563985	10563985	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_006202	exon1	c.C46T	p.L16L	CCTTGGCTGGTGG		48	3	0.06	31	0	0				0	0				
ISYNA1	51477	mdanderson.org	37	19	18548463	18548463	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_016368	exon3	c.C228A	p.A76A	CACCGCGGCGGTG		15	2	0.13	14	0	0				72	0	0.00			
CILP2	148113	broad.mit.edu	37	19	19656233	19656233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	CILP2,NS,neuroblastoma,-1,1	CILP2	NM_153221	exon8	c.G2879A	p.G960D	CAGGGGGCAGCCA		57	3	0.05	48	0	0		84	1	8	0	0.00			
HPN	3249	mdanderson.org	37	19	35551260	35551260	+	Missense_Mutation	SNP	G	G	A	rs145117053	bycluster;by1000genomes	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_182983	exon8	c.G464A	p.R155H	GTGGCCGCAGGAA		32	3	0.09	38	0	0	0			2	0	0.00			
MLL4	0	broad.mit.edu	37	19	36223857	36223857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	MLL4	NM_014727	exon28	c.T6407C	p.L2136P	AGTCACTCCCCCC		216	6	0.03	189	1	0.0052910053		229		17	0	0.00			
CLASRP	11129	mdanderson.org	37	19	45572358	45572358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_007056	exon17	c.G1803T	p.M601I	AAAGATGATCCAG		71	4	0.06	61	0	0				134	0	0.00			
HEATR5B	54497	broad.mit.edu;mdanderson.org	37	2	37234397	37234397	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	HEATR5B	NM_019024	exon29	c.C4573A	p.R1525R	AATTCCGATAGTG		110	5	0.05	113	0	0		185		47	0	0.00			
WBP1	23559	broad.mit.edu	37	2	74687702	74687702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	WBP1	NM_012477	exon4	c.C704T	p.A235V	TTAGTGCCACCCT		137	4	0.03	99	0	0		35		327	0	0.00			
.	0	bcgsc.ca	37	2	106870091	106870091	+	RNA	SNP	G	G	A	rs55850116	bycluster	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	.	.	.	.	AAGCCCGTTCCAG		15	9	0.60	34	0	0				0	0				
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130910391	130910391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_017951	exon20	c.C2338T	p.L780F	CTGTGAGGTGGTA		73	25	0.34	58	0	0				102	29	0.28			
FN1	2335	broad.mit.edu	37	2	216288081	216288081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	FN1	NM_212476	exon9	c.C1385A	p.P462H	GCCATGGGGCAGA		163	6	0.04	141	1	0.0070921986		521		638	0	0.00			
TBC1D20	128637	broad.mit.edu	37	20	425725	425725	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	TBC1D20	NM_144628	exon3	c.C306G	p.D102E	CCGGACGTCCAGC		140	3	0.02	145	0	0		34		40	2	0.05	rescued with RNA-seq		
FRG1B	0	broad.mit.edu;bcgsc.ca	37	20	29633902	29633902	+	Missense_Mutation	SNP	C	C	A	rs145072022		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	FRG1B	.	.	.	.	AGAGAACCAAATT		150	8	0.05	189	1	0.0052910053		181		87	2	0.02			
DIDO1	11083	mdanderson.org	37	20	61513425	61513425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_033081	exon16	c.G3883A	p.A1295T	AGGCTGCCGCTGC		51	3	0.06	52	0	0				10	0	0.00			
GMEB2	26205	mdanderson.org	37	20	62221508	62221508	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_012384	exon10	c.C1527G	p.P509P	AGGCCCGGGGGCA		52	3	0.06	31	0	0				19	0	0.00			
PLXNB2	23654	mdanderson.org	37	22	50722032	50722032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_012401	exon15	c.C2569T	p.R857W	CTCACCGGGTGGA		38	3	0.08	51	0	0				258	0	0.00			
VGLL4	9686	mdanderson.org	37	3	11600098	11600098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001128219	exon5	c.A823G	p.R275G	GGCCCCTGCGAGA		18	2	0.11	16	0	0				89	0	0.00			
SCAP	22937	mdanderson.org	37	3	47462212	47462212	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_012235	exon12	c.C1395A	p.A465A	TGGCTTGGCTGAG		41	3	0.07	29	1	0.0344827586				107	0	0.00			
MUC4	4585	bcgsc.ca	37	3	195513145	195513145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	MUC4	NM_018406	exon2	c.T5306C	p.V1769A	GTGGATACTGAGG		728	55	0.08	646	11	0.0170278638		1505		2	0	0.00			
SPON2	10417	mdanderson.org	37	4	1164277	1164277	+	Missense_Mutation	SNP	C	C	T	rs2279279	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001199021	exon7	c.G724A	p.V242M	GCCGCACCAGTGT		61	2	0.03	64	0	0				31	0	0.00			
CSN2	1447	broad.mit.edu	37	4	70823294	70823294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	CSN2	NM_001891	exon5	c.T373C	p.F125L	CAAAAAAGGGTAT		111	4	0.04	153	0	0		30		0	0				
HPSE	10855	mdanderson.org	37	4	84234379	84234379	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001098540	exon4	c.C561A	p.G187G	ATTTAGGCCAAAG		92	5	0.05	151	0	0				1	0	0.00			
DSPP	1834	bcgsc.ca	37	4	88536686	88536686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	DSPP	NM_014208	exon5	c.A2872G	p.N958D	AGCAGCAATAGCA		63	6	0.10	112	1	0.0089285714		174		0	0				
SGTB	54557	mdanderson.org	37	5	64966159	64966159	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_019072	exon11	c.C829T	p.Q277X	GTTGCTGTATCTG		41	3	0.07	65	0	0				4	0	0.00			
GCNT4	51301	mdanderson.org	37	5	74324717	74324717	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_016591	exon1	c.T1146C	p.C382C	TCCAGTACAACTG		47	3	0.06	57	0	0				2	0	0.00			
HLA-G	3135	ucsc.edu	37	6	29797394	29797394	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	HLA-G	NM_002127	exon5	c.G819A	p.V273V	GGTGGTGCCTTCT		106	1	0.01	111	0	0		90		181	66	0.36			
SUPT3H	8464	broad.mit.edu	37	6	45073703	45073703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	SUPT3H	NM_181356	exon5	c.G175A	p.A59T	AAACTGCTGTTTC		101	4	0.04	94	0	0		75		12	0	0.00			
SYNJ2	8871	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	158517208	158517208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	SYNJ2	NM_003898	exon27	c.G4303A	p.D1435N	AGCTCAGACCCTT		181	17	0.09	159	1	0.0062893082		111		29	2	0.07			
SDK1	221935	mdanderson.org	37	7	4188935	4188935	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	SDK1,NS,carcinoma,0,1	SDK1	NM_152744	exon30	c.G4465T	p.E1489X	CAGGCAGAAGTGA		81	5	0.06	50	0	0		0	1	11	0	0.00			
TARP	0	broad.mit.edu	37	7	38304986	38304986	+	RNA	SNP	C	C	T	rs17418300	by1000genomes	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001003806	exon2	c.G109A	p.V37I	GATCAACTCCGTT		136	5	0.04	100	2	0.02				0	0				
TAF6	6878	mdanderson.org	37	7	99705016	99705016	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001190415	exon15	c.T1998C	p.P666P	CGGGGGAGGAACT		54	3	0.06	42	1	0.0238095238				269	1	0.00			
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3216723	3216723	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_033225	exon21	c.C3255T	p.C1085C	ACCCAGGCAGGTA		102	30	0.29	94	0	0				1	0	0.00			
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145627045	145627045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_013291	exon3	c.G167A	p.S56N	CCTGTGCTCCTGT		177	40	0.23	103	0	0				92	20	0.22			
PTPRD	5789	mdanderson.org	37	9	8376061	8376061	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_002839	exon39	c.A4536G	p.R1512R	GAATTGTCTCACT		41	3	0.07	76	0	0				0	0				
SPTAN1	6709	mdanderson.org	37	9	131343287	131343287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_003127	exon11	c.G1410T	p.Q470H	CCTGCAGCTCTTC		51	3	0.06	64	0	0				60	0	0.00			
UPRT	139596	broad.mit.edu	37	X	74519638	74519638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	UPRT	NM_145052	exon5	c.A631G	p.S211G	ATTCAGAGTGATG		85	3	0.04	74	0	0		46		9	0	0.00			
.	0	broad.mit.edu	37	Y	14499256	14499256	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	.	.	.	.	ATTTTCTTTTTTT		13	4	0.31	22	0	0				0	0				
