Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
TAS1R3	83756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	1267021	1267023	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	TAS1R3	NM_152228	exon2	c.194_196del	p.65_66del	CAGGTTCTCCTCA		28	12	0.43	54	0	0		39		3	0	0.00			
GABRD	2563	broad.mit.edu	37	1	1961133	1961133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	GABRD	NM_000815	exon8	c.G991T	p.A331S	GCCTTTGCTCATT		105	3	0.03	195	0	0		49		6	0	0.00			
AGTRAP	57085	mdanderson.org	37	1	11807591	11807591	+	Missense_Mutation	SNP	G	G	T	rs201093684	by1000genomes	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001040196	exon4	c.G254T	p.R85L	ATCGACGCCATAA		40	3	0.08	91	0	0	0			244	0	0.00			
CROCCP3	0	broad.mit.edu	37	1	16809784	16809784	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	.	.	.	.	GCACCTTCTCAGG		5	3	0.60	16	0	0				0	0				
LDLRAD2	401944	mdanderson.org	37	1	22142477	22142477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001013693	exon3	c.A553G	p.I185V	AGGTGCATCCCCT		43	3	0.07	82	0	0				1	0	0.00			
OVGP1	5016	bcgsc.ca	37	1	111957533	111957533	+	Silent	SNP	C	C	T	rs112145355	bycluster	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	OVGP1	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA		101	3	0.03	156	0	0		177		11	0	0.00			
F5	2153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	169483622	169483622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	F5,colon,carcinoma,+1,1	F5	NM_000130	exon25	c.C6604T	p.R2202C	TGACACGGATAAA		124	7	0.06	124	0	0		1	1	0	0				
GPR52	9293	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	174417851	174417851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	GPR52	NM_005684	exon1	c.C602T	p.A201V	CCAGTGCCTATTT		136	65	0.48	139	1	0.0071942446		40		0	0				
NEBL	10529	mdanderson.org	37	10	21141490	21141490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_006393	exon10	c.C992T	p.A331V	AGGACGGCATTGC		30	3	0.10	42	0	0				0	0				
.	0	bcgsc.ca	37	10	37627062	37627062	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	.	.	.	.	TGGGGCTTTTTTC		84	39	0.46	187	0	0				0	0				
GDF2	2658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48413904	48413904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_016204	exon2	c.G964A	p.G322R	CAGCCCCGGCGCT		62	16	0.26	91	0	0				0	0				
MUC6	4588	bcgsc.ca	37	11	1016870	1016871	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	GG	GG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	MUC6	NM_005961	exon31	c.C5930A	p.P1977H	AGAGAAGGGACTG		280	13	0.05	610	3	0.0049180328		408		1	0	0.00			
MUC6	4588	bcgsc.ca	37	11	1017363	1017363	+	Missense_Mutation	SNP	C	C	G	rs199783663		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	MUC6	NM_005961	exon31	c.G5438C	p.G1813A	ACAGGACCTGTGG		231	11	0.05	462	8	0.0173160173		408		1	1	1.00			
MUC2	4583	mdanderson.org	37	11	1093050	1093050	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_002457	exon30	c.C4869A	p.G1623G	CACTGGCACACAG		33	4	0.12	33	1	0.0303030303				0	0				
SLC15A3	51296	mdanderson.org	37	11	60718892	60718892	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_016582	exon1	c.G132A	p.L44L	GCGCTCCAGCATC		46	3	0.07	88	0	0				2	0	0.00			
IGHMBP2	3508	mdanderson.org	37	11	68704480	68704480	+	Silent	SNP	G	G	T	rs2228207	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_002180	exon13	c.G2532T	p.A844A	GAGCGCGCAGGGG		20	2	0.10	27	0	0				13	0	0.00			
FZD4	8322	mdanderson.org	37	11	86662968	86662968	+	Missense_Mutation	SNP	C	C	T	rs148970041		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_012193	exon2	c.G830A	p.R277Q	CTTTCCCGGCCTA		39	3	0.08	81	0	0	0			2	0	0.00			
FOXJ2	55810	broad.mit.edu	37	12	8196601	8196601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	FOXJ2	NM_018416	exon5	c.G532T	p.A178S	GGCGTTGCAGGGA		317	5	0.02	109	0	0		43		6	0	0.00			
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32138197	32138197	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_018169	exon4	c.T4308C	p.S1436S	AGCGAGTTCATCT		372	154	0.41	149	0	0				445	213	0.48			
KIF21A	55605	broad.mit.edu	37	12	39735383	39735383	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	KIF21A,NS,carcinoma,0,2	KIF21A	NM_001173464	exon14	c.G1845A	p.E615E	CTCCTCCTCTTCT		334	5	0.01	138	1	0.0072463768		238	2	23	0	0.00			
DDX23	9416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49231066	49231066	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_004818	exon8	c.C864T	p.P288P	TCACAGGGGGTTG		143	44	0.31	148	0	0				174	60	0.34			
TROAP	10024	ucsc.edu	37	12	49718012	49718012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	TROAP	NM_001100620	exon4	c.A412G	p.R138G	CTCGCCAGGTGCC		166	1	0.01	208	0	0		80		109	15	0.14			
RAB5B	5869	broad.mit.edu	37	12	56383797	56383797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	RAB5B	NM_002868	exon3	c.C230T	p.A77V	ACACAGCTGGGCA		429	7	0.02	285	0	0		22		49	0	0.00			
CCDC64	92558	broad.mit.edu;bcgsc.ca	37	12	120427911	120427911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	CCDC64	NM_207311	exon1	c.C239T	p.P80L	CCGAGCCTGGGTC		74	23	0.31	60	1	0.0166666667		40		2	2	1.00			
PARP4	143	mdanderson.org	37	13	25052312	25052312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_006437	exon13	c.C1551A	p.D517E	GGAAAAGTCCTTC		49	3	0.06	84	0	0				8	0	0.00			
MCF2L	23263	mdanderson.org	37	13	113718631	113718631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001112732	exon6	c.G503T	p.S168I	TGCTGAGCTCCGT		52	3	0.06	74	0	0				5	0	0.00			
NFATC4	4776	broad.mit.edu	37	14	24841659	24841659	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	NFATC4	NM_001198967	exon4	c.A1398C	p.L466L	TGCCCTACCCCCA		46	10	0.22	59	8	0.1355932203		115		1	1	1.00			
ATXN3	4287	hgsc.bcm.edu	37	14	92537354	92537355	+	In_Frame_Ins	INS	-	-	CTGCTGCTGCTGCTGCTGCTG	rs76478261	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	ATXN3,NS,carcinoma,0,7	ATXN3	NM_004993	exon10	c.916_917insCAGCAGCAGCAGCAGCAGCAG	p.G306delinsQQQQQQQG	GGTCCCCCTGCTG		60	0	0.00	83	0	0		46		53	0	0.00			
LOC645752	0	broad.mit.edu	37	15	78217296	78217296	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	.	.	.	.	GTGGCAACCACCA		135	8	0.06	117	3	0.0256410256				0	0				
TICRR	90381	broad.mit.edu	37	15	90168410	90168410	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	C15orf42,NS,carcinoma,0,1	.	NM_152259	exon20	c.A4869C	p.S1623S	TGTGTCACCCCCC		67	11	0.16	56	9	0.1607142857			1	49	8	0.16			
TBL3	10607	mdanderson.org	37	16	2024674	2024674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_006453	exon5	c.G373T	p.A125S	CTGCTAGCCACAG		33	3	0.09	49	0	0				72	0	0.00			
FAM86A	196483	bcgsc.ca	37	16	5141852	5141852	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	FAM86A	NM_201400	exon4	c.G285A	p.A95A	CGCCAGCGCTTCA		236	23	0.10	357	5	0.0140056022		32		23	0	0.00			
SMPD3	55512	broad.mit.edu	37	16	68397765	68397767	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	GTC	GTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	SMPD3	NM_018667	exon6	c.1558_1560del	p.520_520del	CAGCTTGTCGTCT		27	8	0.30	30	0	0		52		0	0				
.	0	broad.mit.edu	37	17	20322623	20322624	+	RNA	INS	-	-	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	.	.	.	.	CAGCTGATTTTTT		35	7	0.20	21	0	0				0	0				
KRT18P55	0	broad.mit.edu	37	17	26633346	26633347	+	RNA	INS	-	-	TG	rs199753268	by1000genomes	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	.	.	.	.	TTGTTGTTTTTTT		16	6	0.38	8	0	0				0	0				
SLFN5	162394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33591734	33591734	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_144975	exon4	c.A1671T	p.T557T	ACTGACAAATAAA		126	17	0.13	135	0	0				1	0	0.00			
KRTAP4-6	81871	hgsc.bcm.edu	37	17	39296317	39296317	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	KRTAP4-6,NS,carcinoma,-1,1	KRTAP4-6	NM_030976	exon1	c.T423C	p.R141R	GCTGGGACGGCAG		67	5	0.07	68	0	0		-1	1	0	0				
KCNH4	23415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40323897	40323897	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	KCNH4,bladder,carcinoma,0,1	KCNH4	NM_012285	exon7	c.C1104T	p.V368V	CGCAAAGACCGAC		86	26	0.30	111	0	0		0	1	0	0				
GNAL	2774	broad.mit.edu	37	18	11824997	11824997	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	GNAL	NM_182978	exon5	c.G705T	p.L235L	CCAGCTGATTGAC		64	3	0.05	130	0	0		59		20	0	0.00			
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31324017	31324017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_030632	exon12	c.C4205T	p.A1402V	CTGTAGCGGTCAC		72	32	0.44	149	0	0				0	0				
TSHZ1	10194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72999575	72999575	+	Missense_Mutation	SNP	C	C	T	rs370322226		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	TSHZ1,NS,lymphoid_neoplasm,0,1	TSHZ1	NM_005786	exon2	c.C2078T	p.P693L	ACTCACCGGAGCC		32	8	0.25	46	0	0		0	1	2	0	0.00			
SAFB2	9667	mdanderson.org	37	19	5593989	5593989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_014649	exon15	c.G2120T	p.R707L	CGCTCGCGGTGGA		10	2	0.20	16	0	0				67	0	0.00			
NOTCH3	4854	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15299844	15299844	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	NOTCH3	NM_000435	exon8	c.C1334G	p.T445R	AGGCACGTGGCCT		86	16	0.19	103	1	0.0097087379		340		10	1	0.10			
ZNF536	9745	mdanderson.org	37	19	30934497	30934497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_014717	exon2	c.G28T	p.V10L	CTTGGAGTGTCTT		31	3	0.10	75	0	0				0	0				
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21239410	21239410	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_000384	exon21	c.G3233C	p.R1078T	TTAACTCTGAGGA		162	23	0.14	235	0	0				0	0				
ZNF513	130557	mdanderson.org	37	2	27601026	27601026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_144631	exon4	c.C1012A	p.R338S	TGCAGCGCCCACA		43	3	0.07	32	0	0				88	0	0.00			
SPDYA	245711	broad.mit.edu	37	2	29063247	29063247	+	Silent	SNP	G	G	T	rs142885879	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	SPDYA	NM_001142634	exon6	c.G762T	p.G254G	AGCAGGGGTGACA		268	5	0.02	289	0	0		41		0	0				
CAPN13	92291	ucsc.edu;bcgsc.ca	37	2	30955408	30955408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	CAPN13	NM_144575	exon20	c.G1823A	p.S608N	TCACGGCTGATGA		39	4	0.10	33	0	0		70		0	0				
QPCT	25797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37599594	37599594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_012413	exon6	c.C919A	p.H307N	GATGACCATATTC		125	18	0.14	136	0	0				42	7	0.17			
ARID5A	10865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97217882	97217882	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_212481	exon7	c.G1617T	p.L539L	CTTCCTGGCCACC		77	16	0.21	69	0	0				24	3	0.13			
ANKRD30BL	554226	broad.mit.edu	37	2	132919171	132919171	+	Silent	SNP	A	A	G	rs199695856	bycluster	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	ANKRD30BL	.	.	.	.	ATCCCCATGGTGA		161	8	0.05	187	1	0.0053475936		36		0	0				
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	Silent	SNP	G	G	A	rs111295191	bycluster	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	ANKRD30BL	.	.	.	.	AGAGTCGTTGTTG		182	6	0.03	211	0	0		36		0	0				
ZEB2	9839	mdanderson.org	37	2	145147409	145147409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_014795	exon10	c.C3254A	p.A1085E	TCCTCCGCCTCCC		45	3	0.07	52	0	0				0	0				
RBCK1	10616	ucsc.edu;bcgsc.ca	37	20	409639	409639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	RBCK1,NS,carcinoma,0,1	RBCK1	NM_031229	exon11	c.G1353T	p.Q451H	GTGCCAGATCGTG		38	4	0.11	73	0	0		38	1	49	0	0.00			
TRMT6	51605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5923280	5923280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_015939	exon7	c.A820G	p.M274V	ATAACATCTTGGC		116	74	0.64	208	0	0				57	28	0.49			
TANGO2	128989	bcgsc.ca	37	22	20030887	20030887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	TANGO2	NM_152906	exon3	c.G66T	p.L22F	CATCTTGGCAGCC		61	5	0.08	96	0	0		4		10	0	0.00			
SCAP	22937	hgsc.bcm.edu	37	3	47459292	47459292	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	SCAP,caecum,carcinoma,-2,1	SCAP	NM_012235	exon17	c.G2472A	p.V824V	GCTGCCCACGCCA		101	21	0.21	141	1	0.0070921986		-2	1	16	2	0.13			
EPHA6	285220	hgsc.bcm.edu	37	3	97194255	97194255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	EPHA6_ENST00000502694,extremity,malignant_melanoma,-1,2	EPHA6_ENST00000502694	NM_001080448	exon8	c.G1954A	p.G652R	GTTGGCGGATTCA		100	4	0.04	124	0	0		-1	2	1	0	0.00			
TMEM39A	55254	broad.mit.edu	37	3	119156690	119156690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	TMEM39A	NM_018266	exon6	c.C836A	p.A279E	AAATCTGCTTTCA		111	4	0.04	149	0	0		36		56	0	0.00			
PLXND1	23129	mdanderson.org	37	3	129325111	129325111	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_015103	exon1	c.C372A	p.Y124X	CTTGTTGTAGTTG		38	3	0.08	43	0	0				9	0	0.00			
DOK7	285489	mdanderson.org	37	4	3494689	3494689	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_173660	exon7	c.C976T	p.Q326X	CCGCGGCAGCTGC		20	2	0.10	30	0	0				8	0	0.00			
MSX1	4487	mdanderson.org	37	4	4861868	4861868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_002448	exon1	c.C242T	p.A81V	CCCTGGCGCCCTC		18	2	0.11	28	0	0				1	0	0.00			
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	66201775	66201775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_004439	exon16	c.G2727T	p.Q909H	CATTAACTGATAG		270	18	0.07	207	0	0				0	0				
PALLD	23022	broad.mit.edu;ucsc.edu	37	4	169589444	169589444	+	Missense_Mutation	SNP	G	G	C	rs148155834	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	PALLD,NS,carcinoma,0,1	PALLD	NM_001166108	exon3	c.G1012C	p.D338H	GAGGACGACACAG		75	18	0.24	120	3	0.025		179	1	0	0				
DAB2	1601	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	39377194	39377194	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	DAB2	NM_001343	exon12	c.T1695C	p.T565T	AGGGGGAGTTGAG		120	5	0.04	214	1	0.0046728972		124		8	0	0.00			
LMNB1	4001	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	126141339	126141339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	LMNB1	NM_005573	exon3	c.G593T	p.C198F	ATCGTTGTCAGAG		99	5	0.05	112	0	0		49		280	0	0.00			
SRA1	10011	ucsc.edu	37	5	139937054	139937054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	SRA1	NM_001035235	exon1	c.G20A	p.G7D	GCTTGGCCAGCGG		40	4	0.10	33	0	0		24		5	0	0.00			
PCDHA3	56145	mdanderson.org	37	5	140182666	140182666	+	Silent	SNP	G	G	T	rs368819593	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	PCDHA3_ENST00000522353,colon,carcinoma,+1,2	PCDHA3_ENST00000522353	NM_018906	exon1	c.G1884T	p.T628T	GTACACGGGAGAG		57	3	0.05	60	0	0		1	2	0	0				
PDGFRB	5159	mdanderson.org	37	5	149502625	149502625	+	Silent	SNP	G	G	T	rs146967726	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_002609	exon15	c.C2163A	p.P721P	CCCAACGGGCAGA		57	3	0.05	66	0	0				7	0	0.00			
SKIV2L	6499	mdanderson.org	37	6	31931719	31931719	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_006929	exon16	c.C1677T	p.A559A	CCTGGCCTCCCTC		40	3	0.08	50	0	0				43	1	0.02			
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG		29	2	0.07	28	0	0		0	2	1	0	0.00			
SLC25A27	9481	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46623642	46623642	+	Silent	SNP	C	C	A	rs200951505	bycluster;alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	SLC25A27	NM_001204051	exon2	c.C169A	p.R57R	CTTGCTCGGTTGG		113	24	0.21	121	1	0.0082644628		22		1	0	0.00			
COL21A1	81578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	56035583	56035583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_030820	exon5	c.T890C	p.L297S	CTCCATAAATCCC		261	24	0.09	230	0	0				2	0	0.00			
WDR27	253769	mdanderson.org	37	6	170043874	170043874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_182552	exon17	c.C1666A	p.Q556K	GCCACTGCCCATC		40	3	0.08	61	0	0				3	0	0.00			
TNRC18	84629	broad.mit.edu	37	7	5410781	5410781	+	Silent	SNP	C	C	T	rs374062653		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	TNRC18	NM_001080495	exon11	c.G3444A	p.P1148P	TTCCTCCGGGCCC		116	4	0.03	82	0	0		311		119	0	0.00			
DBNL	28988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44098556	44098556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001122956	exon9	c.C836A	p.T279N	TGTCCACCACCTC		101	20	0.20	96	0	0				141	41	0.29			
H2AFV	94239	mdanderson.org	37	7	44874113	44874113	+	Missense_Mutation	SNP	T	T	C	rs1802437	bycluster;by2hit2allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_012412	exon5	c.A374G	p.Q125R	GTTTTCTGCTGTC		150	10	0.07	133	1	0.007518797	0.001			1146	3	0.00			
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151874328	151874328	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	MLL3	NM_170606	exon38	c.8211delT	p.N2737fs	TCCAAATTATCTA		59	20	0.34	97	0	0		1564		1	0	0.00			
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	3855559	3855559	+	Nonsense_Mutation	SNP	G	G	C	rs372509834	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_033225	exon5	c.C684G	p.Y228X	GTTCTCGTACTCT		117	13	0.11	144	0	0				0	0				
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	70533339	70533339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001128205	exon14	c.C1447T	p.L483F	GACCTGCTCACAG		164	49	0.30	92	0	0				0	0				
UBAP2	55833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33953311	33953311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_018449	exon12	c.C1028T	p.A343V	TTGACGGCAGTGG		131	21	0.16	164	0	0				48	12	0.25			
DOLPP1	57171	ucsc.edu	37	9	131851281	131851281	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	DOLPP1	NM_020438	exon8	c.C712T	p.Q238X	AAACTGCAGTGAC		37	4	0.11	47	0	0		17		76	0	0.00			
C9orf139	401563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139927646	139927646	+	Missense_Mutation	SNP	C	C	A	rs368472017		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_207511	exon2	c.C131A	p.A44E	CCCAGGCGTGGCC		57	17	0.30	103	0	0				0	0				
ND6	4541	broad.mit.edu;bcgsc.ca	37	MT	14612	14612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	ENST00000361681	exon1	c.C62T	p.S21F	GGCTTAGAAGAAA		155	114	0.74	117	1	0.0085470085				0	0				
.	402408	bcgsc.ca	37	X	65718100	65718100	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	.	.	.	.	AAGAAGGGAGCCA		21	6	0.29	17	0	0				0	0				
.	100129013	bcgsc.ca	37	X	67992110	67992110	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	.	.	.	.	CTCTCTATAAGAA		83	41	0.49	84	0	0				0	0				
FLNA	0	broad.mit.edu;mdanderson.org	37	X	153589789	153589789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	FLNA	NM_001456	exon21	c.C3094T	p.R1032C	GGAAGCGCACCAC		80	4	0.05	66	0	0		373		111	0	0.00			
