Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PLEKHN1	84069	bcgsc.ca	37	1	909421	909421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	PLEKHN1	NM_032129	exon14	c.C1643A	p.A548D	CAGACGCCCCTCA		24	0	0.00	25	0	0		49		1	0	0.00			
KIF17	57576	mdanderson.org	37	1	21044035	21044035	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_020816	exon1	c.C165T	p.D55D	GGCGCCGTCGAAG		46	4	0.09	77	0	0				1	0	0.00			
CELA3B	23436	mdanderson.org	37	1	22307358	22307358	+	Silent	SNP	C	C	T	rs7528300	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_007352	exon3	c.C171T	p.T57T	CCACACCTGTGGC		84	3	0.04	85	0	0				0	0				
CYP4Z2P	0	broad.mit.edu	37	1	47348892	47348892	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	ATGATGCTGTCCA		748	9	0.01	797	0	0				1	0	0.00			
.	0	broad.mit.edu	37	1	121245721	121245721	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	CAAAACAAAAAAA		6	2	0.33	9	0	0				0	0				
.	0	broad.mit.edu	37	1	149400836	149400837	+	RNA	INS	-	-	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	ACAGAGATTTTTT		6	2	0.33	6	0	0				0	0				
ILDR2	387597	mdanderson.org	37	1	166890129	166890129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_199351	exon9	c.G1699A	p.A567T	ACCAAGCGTAGTA		12	2	0.17	20	0	0				5	0	0.00			
SELP	6403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	169581527	169581527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_003005	exon6	c.G889A	p.A297T	CTAATGCAAATCC		161	28	0.17	131	0	0				9	0	0.00			
TNR	7143	broad.mit.edu	37	1	175372735	175372735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	TNR	NM_003285	exon4	c.C517A	p.P173T	AGTGAGGGATATA		135	3	0.02	90	2	0.0222222222		399		1	0	0.00			
TOR1AIP2	163590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	179820097	179820097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001199260	exon5	c.G436A	p.G146R	CAGTTCCGTCACT		177	38	0.21	152	0	0				26	3	0.12			
CACNA1S	779	ucsc.edu	37	1	201035437	201035437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	CACNA1S	NM_000069	exon21	c.G2665A	p.A889T	AGATGGCACTGGA		39	4	0.10	17	0	0		249		9	0	0.00			
AVPR1B	553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	206224555	206224555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_000707	exon1	c.G115A	p.G39R	GAGATCGGAGTCC		182	42	0.23	157	0	0				1	1	1.00			
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	207110937	207110937	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_002644	exon4	c.T548G	p.V183G	GGATTTACATAAC		148	21	0.14	132	0	0				84	22	0.26			
DIP2C	22982	bcgsc.ca	37	10	415572	415572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	DIP2C	NM_014974	exon18	c.C1993A	p.P665T	CCGTGGGCCTGTA		79	1	0.01	65	0	0		195		38	0	0.00			
C10orf54	64115	mdanderson.org	37	10	73511467	73511467	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_022153	exon6	c.C856T	p.L286L	GAGACAGGGGGGT		43	3	0.07	50	0	0				152	0	0.00			
DUSP13	51207	mdanderson.org	37	10	76863743	76863743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	DUSP13_ENST00000394707,NS,carcinoma,-1,1	DUSP13_ENST00000394707	NM_001007273	exon2	c.C92A	p.A31D	CGCTGGGCTTCCA		41	4	0.10	69	0	0		-1	1	2	0	0.00			
DLG5	9231	mdanderson.org	37	10	79581552	79581552	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_004747	exon15	c.C2690A	p.S897X	GCATCTGAGCGGA		17	2	0.12	32	0	0				106	0	0.00			
IDE	3416	mdanderson.org	37	10	94214294	94214294	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_004969	exon25	c.T2967C	p.P989P	CACTTCAGGCTGC		46	3	0.07	82	0	0				51	0	0.00			
VWA2	340706	bcgsc.ca	37	10	116044682	116044682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	VWA2	NM_001272046	exon10	c.G950A	p.G317D	TGGACGGCTACCA		32	0	0.00	59	0	0		64		3	0	0.00			
C10orf88	80007	mdanderson.org	37	10	124713659	124713659	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	C10orf88,colon,carcinoma,-1,1	C10orf88	NM_024942	exon1	c.C36A	p.R12R	GGGGCGGCGGGTG		29	3	0.10	21	0	0		-1	1	23	0	0.00			
INSC	387755	mdanderson.org	37	11	15212344	15212344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001031853	exon6	c.G818T	p.C273F	CCTTGTGCCGCAT		44	3	0.07	99	0	0				9	0	0.00			
MACROD1	28992	mdanderson.org	37	11	63918712	63918712	+	Silent	SNP	G	G	A	rs374513283		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_014067	exon3	c.C516T	p.A172A	CTCACCGGCGTTG		24	2	0.08	36	0	0				24	0	0.00			
KRTAP5-8	57830	bcgsc.ca	37	11	71249545	71249545	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	KRTAP5-8,NS,carcinoma,0,1	KRTAP5-8	NM_021046	exon1	c.C444T	p.C148C	CAGCTGCTGTAAG		29	1	0.03	54	0	0		28	1	0	0				
SLC38A1	81539	bcgsc.ca	37	12	46622952	46622952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	SLC38A1	NM_030674	exon5	c.G298A	p.G100R	GGATTCCAGTGTT		123	0	0.00	144	0	0		58		44	0	0.00			
RAPGEF3	10411	mdanderson.org	37	12	48141596	48141596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	RAPGEF3,colon,carcinoma,0,1	RAPGEF3	NM_001098531	exon14	c.G1372A	p.V458I	TGCAGACGTAGGT		22	3	0.14	30	0	0		0	1	27	0	0.00			
HNRNPA1	3178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	54677642	54677642	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_031157	exon9	c.C954T	p.Y318Y	GAATTACAACAAT		68	12	0.18	56	0	0				6650	1575	0.24			
RHOF	54509	broad.mit.edu	37	12	122231059	122231059	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	RHOF	NM_019034	exon2	c.C225A	p.A75A	CTCACCGGCCGTG		68	3	0.04	83	0	0		6		35	0	0.00			
NCOR2	9612	broad.mit.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	NCOR2_ENST00000405201,NS,carcinoma,0,11	NCOR2	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT		85	5	0.06	68	5	0.0735294118		475	11	213	1	0.00			
MAB21L1	4081	ucsc.edu;mdanderson.org	37	13	36049616	36049616	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	MAB21L1	NM_005584	exon1	c.C660A	p.G220G	CTGCTTGCCGGCC		41	4	0.10	50	0	0		52		139	0	0.00			
.	0	bcgsc.ca	37	14	19422774	19422774	+	RNA	SNP	C	C	A	rs78338598		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	GGCTCCCGGCCCC		44	4	0.09	65	2	0.0307692308				0	0				
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	70633871	70633871	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_183002	exon2	c.A1269G	p.G423G	CATGTCTCCCCCT		78	5	0.06	103	0	0				16	0	0.00			
PTPN21	11099	mdanderson.org	37	14	88945534	88945534	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_007039	exon13	c.T2241C	p.P747P	GACGCGAGGGCAG		43	3	0.07	47	1	0.0212765957				9	0	0.00			
FAM181A	90050	broad.mit.edu	37	14	94394839	94394839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	FAM181A	NM_138344	exon3	c.A394G	p.R132G	CTGAAAAGGGGGT		57	4	0.07	59	0	0		42		10	0	0.00			
SPINT1	6692	broad.mit.edu	37	15	41149071	41149071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	SPINT1	NM_181642	exon11	c.C1488A	p.H496Q	CTTCCACGGACAC		120	3	0.03	116	0	0		28		213	0	0.00			
SPTBN5	51332	mdanderson.org	37	15	42175409	42175409	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_016642	exon9	c.C1572T	p.T524T	ACAGGCGGTGGAC		50	3	0.06	71	0	0				1	0	0.00			
ODF3L1	161753	mdanderson.org	37	15	76019748	76019748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_175881	exon4	c.T692C	p.L231P	TGGACCTCACGCC		52	3	0.06	75	0	0				4	0	0.00			
LOC645752	0	broad.mit.edu	37	15	78217296	78217296	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	GTGGCAACCACCA		108	4	0.04	124	2	0.0161290323				0	0				
.	0	broad.mit.edu	37	15	84957462	84957466	+	RNA	DEL	GTGGC	GTGGC	-	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	GTGGC	GTGGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	TGTAGGGTGGCAT		7	4	0.57	5	0	0				0	0				
AKAP13	11214	bcgsc.ca	37	15	86118561	86118561	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	AKAP13	NM_006738	exon6	c.861+1G>T	.	CTAATGGTAAGTC		115	0	0.00	116	0	0		394		0	0				
ZNF174	7727	bcgsc.ca	37	16	3458752	3458752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	ZNF174	NM_003450	exon3	c.C1057A	p.P353T	GAGAGACCCTACA		112	0	0.00	142	0	0		32		66	0	0.00			
PAGR1	79447	mdanderson.org	37	16	29828146	29828146	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_024516	exon1	c.G300T	p.A100A	GCCTGCGGATGGG		46	3	0.07	49	0	0				259	0	0.00			
CORO1A	11151	mdanderson.org	37	16	30198177	30198177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001193333	exon5	c.G362T	p.R121L	CCCTGCGGGAGCC		37	3	0.08	54	0	0				171	0	0.00			
SETD1A	9739	broad.mit.edu;mdanderson.org	37	16	30992480	30992480	+	Silent	SNP	C	C	T	rs377613466		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	SETD1A	NM_014712	exon17	c.C4791T	p.Y1597Y	CGAATACGTGGGT		86	5	0.06	72	0	0		143		188	1	0.01			
RLTPR	146206	mdanderson.org	37	16	67683467	67683467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001013838	exon20	c.G1864A	p.G622R	GCCATGGGGGACG		9	2	0.22	18	0	0				7	0	0.00			
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	70913326	70913326	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001270974	exon62	c.G10431C	p.V3477V	AACCGTCACTCGA		63	19	0.30	81	0	0				12	2	0.17			
ZNF469	84627	mdanderson.org	37	16	88498332	88498332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001127464	exon2	c.C4370T	p.A1457V	CATGTGCCGACCC		34	3	0.09	59	0	0				15	0	0.00			
KRT16P1	0	broad.mit.edu	37	17	18345954	18345955	+	RNA	DEL	CA	CA	-	rs67478682		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	CA	CA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	CTCTCCCACAGTC		39	8	0.21	44	13	0.2954545455				0	0				
RHBDL3	162494	broad.mit.edu	37	17	30615824	30615824	+	Missense_Mutation	SNP	G	G	T	rs140645420	alternate_allele	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	RHBDL3	NM_138328	exon4	c.G308T	p.R103L	ACAAGCGTTCCAA		209	4	0.02	175	1	0.0057142857		49		21	0	0.00			
TMEM132E	124842	mdanderson.org	37	17	32964258	32964258	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_207313	exon10	c.C1962T	p.Y654Y	CCTCTACAGCCCA		64	4	0.06	105	0	0				6	0	0.00			
ERBB2	2064	broad.mit.edu	37	17	37868702	37868702	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	ERBB2	NM_001005862	exon12	c.1058+1G>T	.	TGATGGGTAAGAG		128	4	0.03	135	0	0		429		9	0	0.00			
MKNK2	2872	mdanderson.org	37	19	2043519	2043519	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_017572	exon6	c.C402A	p.Y134X	GCACTGGTACAGC		53	3	0.06	82	0	0				152	0	0.00			
VAV1	7409	mdanderson.org	37	19	6833570	6833570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_005428	exon17	c.C1642T	p.R548W	TGCCATCGGTGCC		56	3	0.05	94	0	0				23	0	0.00			
CERS4	79603	mdanderson.org	37	19	8326962	8326962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_024552	exon12	c.G1154T	p.R385L	CCGGGCGTCTGAC		21	3	0.14	30	0	0				159	1	0.01			
BRD4	23476	mdanderson.org	37	19	15353857	15353857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_058243	exon14	c.T3023C	p.I1008T	TGTTGGATGTGGG		24	3	0.13	29	1	0.0344827586				14	0	0.00			
FBXO17	115290	mdanderson.org	37	19	39435736	39435736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_148169	exon5	c.C593A	p.A198D	TCTCGAGCGCCCC		36	3	0.08	87	0	0				161	0	0.00			
ELSPBP1	64100	mdanderson.org	37	19	48517554	48517554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	ELSPBP1,brain,glioma,+1,1	ELSPBP1	NM_022142	exon3	c.G197T	p.C66F	AGTACTGCCAGAG		71	4	0.06	97	0	0		1	1	0	0				
RPL18	6141	mdanderson.org	37	19	49119198	49119198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_000979	exon6	c.C427A	p.R143S	CCTTGCGAGGACC		32	3	0.09	60	0	0				3704	1	0.00			
HRC	3270	mdanderson.org	37	19	49656771	49656771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_002152	exon1	c.A1724G	p.E575G	AGCCCCTCCTCCT		42	3	0.07	63	0	0				15	0	0.00			
PRR12	57479	mdanderson.org	37	19	50100336	50100336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_020719	exon4	c.G2744T	p.S915I	ACCGCAGCCCCAG		41	3	0.07	98	0	0				96	0	0.00			
SIGLEC8	27181	mdanderson.org	37	19	51958842	51958842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	SIGLEC8,NS,carcinoma,+1,1	SIGLEC8	NM_014442	exon4	c.G881A	p.S294N	GTCCAGCTCAGCC		45	3	0.07	91	0	0		1	1	5	0	0.00			
PRPF31	26121	mdanderson.org	37	19	54629912	54629912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_015629	exon9	c.C865T	p.R289W	CTGCGGCGGAAAG		66	5	0.08	84	0	0				201	0	0.00			
EPN1	29924	mdanderson.org	37	19	56196955	56196955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001130071	exon4	c.G755T	p.R252L	GGCTGCGGGAAGA		31	3	0.10	37	0	0				388	0	0.00			
EML6	400954	broad.mit.edu	37	2	55106753	55106753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	EML6	NM_001039753	exon16	c.A2414G	p.K805R	GGAAAAAGGGAGA		203	5	0.02	205	0	0		85		6	0	0.00			
CCDC85A	114800	mdanderson.org	37	2	56411850	56411850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001080433	exon1	c.G91T	p.A31S	CCGCCCGCGCCGG		25	2	0.08	29	0	0				3	0	0.00			
MAT2A	4144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	85769043	85769043	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_005911	exon5	c.A497G	p.E166G	TGGCAGAACTACG		100	26	0.26	88	0	0				514	156	0.30			
.	0	broad.mit.edu	37	2	91887904	91887905	+	RNA	INS	-	-	T	rs369805878	alternate_allele	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	ATTTTCCATTTTT		159	17	0.11	153	6	0.0392156863				0	0				
TTN	7273	broad.mit.edu	37	2	179473629	179473629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	TTN_ENST00000359218,NS,carcinoma,+1,10	TTN	NM_001267550	exon274	c.C52109T	p.P17370L	GGTCCCGGTGTAT		63	3	0.05	45	0	0		18412	10	0	0				
INO80D	54891	broad.mit.edu	37	2	206869700	206869700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	INO80D	NM_017759	exon11	c.C2476A	p.H826N	TTCCATGGGGTGA		122	3	0.02	146	0	0		134		5	0	0.00			
DYTN	391475	mdanderson.org	37	2	207559536	207559536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001093730	exon8	c.G785A	p.S262N	GACTTGCTGTGAA		52	3	0.06	70	0	0				0	0				
COL6A3	1293	bcgsc.ca	37	2	238253730	238253730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	COL6A3	NM_004369	exon34	c.C7133A	p.A2378D	ATGAGGGCACATT		151	0	0.00	164	1	0.006097561		608		1067	1	0.00			
NINL	22981	mdanderson.org	37	20	25457291	25457291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	NINL,NS,carcinoma,-1,1	NINL	NM_025176	exon17	c.G2636A	p.R879H	TGCCTGCGGCGAG		22	3	0.14	27	1	0.037037037		-1	1	63	0	0.00			
MLLT10P1	140678	hgsc.bcm.edu	37	20	29637851	29637851	+	RNA	SNP	C	C	G	rs148007340		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	GGATTTCTTTCAA		16	5	0.31	10	0	0				24	0	0.00			
DDX27	55661	broad.mit.edu	37	20	47858511	47858511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	DDX27	NM_017895	exon17	c.A2072G	p.K691R	AAAAAAAGGGGGA		110	4	0.04	110	0	0		74		339	1	0.00			
GAB4	128954	bcgsc.ca	37	22	17488891	17488891	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	GAB4	NM_001037814	exon1	c.C114A	p.G38G	CACGTGGCCACTT		172	0	0.00	176	1	0.0056818182		95		0	0				
POM121L9P	0	broad.mit.edu	37	22	24657088	24657088	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	GGGAAGAGGCGGG		10	6	0.60	6	0	0				0	0				
POM121L9P	0	broad.mit.edu	37	22	24657092	24657093	+	RNA	INS	-	-	AGT	rs10682297	alternate_allele	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	AGAGGCGGGTCCA		10	6	0.60	4	0	0				0	0				
TFIP11	24144	mdanderson.org	37	22	26895573	26895573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001008697	exon10	c.C826A	p.Q276K	CCTTCTGCTCCCG		30	3	0.10	64	0	0				100	0	0.00			
SHANK3	85358	mdanderson.org	37	22	51169219	51169219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_033517	exon22	c.G4633T	p.A1545S	GGCGGGGCCTCGT		12	2	0.17	15	0	0				21	0	0.00			
NUP210	23225	mdanderson.org	37	3	13373825	13373825	+	Silent	SNP	C	C	T	rs147322542		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_024923	exon29	c.G3903A	p.S1301S	GTTGGGCGACATT		53	3	0.06	69	0	0	0			147	0	0.00			
MRPS25	64432	bcgsc.ca	37	3	15094113	15094115	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	MRPS25	NM_022497	exon4	c.355_357del	p.119_119del	CTTTTTCTCCTCC		89	0	0.00	106	0	0		14		153	0	0.00			
SCN11A	11280	broad.mit.edu	37	3	38991741	38991741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	SCN11A	NM_014139	exon1	c.A113G	p.K38R	GACTTCTTTTTCT		131	4	0.03	135	0	0		296		9	0	0.00			
.	0	bcgsc.ca	37	4	9405207	9405207	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	CCATGTTGGGAGA		222	8	0.04	212	2	0.0094339623				0	0				
MAML3	55534	broad.mit.edu	37	4	140640915	140640915	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	MAML3	NM_018717	exon6	c.G2967A	p.G989G	CGGCTGCCCAGCT		49	3	0.06	72	0	0		192		29	0	0.00			
CLGN	1047	bcgsc.ca	37	4	141311836	141311836	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	CLGN	NM_001130675	exon15	c.C1698A	p.I566I	TTCTATGATTTCA		152	0	0.00	186	0	0		76		168	0	0.00			
ADCY2	108	bcgsc.ca	37	5	7743791	7743791	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	ADCY2	NM_020546	exon15	c.C1882T	p.L628L	TCCGTCCTGGGCA		126	0	0.00	201	0	0		337		13	0	0.00			
NADKD1	133686	mdanderson.org	37	5	36197730	36197730	+	Missense_Mutation	SNP	G	G	T	rs368195000	alternate_allele	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001085411	exon11	c.C1103A	p.P368Q	TCTTCCGGACTGT		47	3	0.06	73	0	0				74	0	0.00			
NADKD1	133686	bcgsc.ca	37	5	36211999	36211999	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	NADKD1	NM_001085411	exon7	c.T807A	p.L269L	TGGCAGAAGTTGG		49	0	0.00	82	0	0		47		68	0	0.00			
PCDHGA8	9708	hgsc.bcm.edu	37	5	140773214	140773214	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	PCDHGA8,NS,carcinoma,0,1	PCDHGA8	NM_014004	exon1	c.A834T	p.A278A	AGTGGCATACAAA		100	4	0.04	145	0	0		0	1	2	0	0.00			
TNIP1	10318	mdanderson.org	37	5	150436453	150436453	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001252385	exon6	c.G501A	p.T167T	ACTCAGCGTGGTC		24	2	0.08	48	0	0				127	0	0.00			
TBP	6908	hgsc.bcm.edu;mdanderson.org	37	6	170871016	170871016	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	TBP,NS,carcinoma,0,2	TBP	NM_003194	exon3	c.G192A	p.Q64Q	ACAACAGCAGCAG		86	6	0.07	80	1	0.0125		0	2	93	0	0.00			
ELFN1	392617	mdanderson.org	37	7	1785645	1785645	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001128636	exon2	c.C1413T	p.Y471Y	CAAGTACGGGCCA		50	3	0.06	40	0	0				16	0	0.00			
PSPH	5723	broad.mit.edu	37	7	56085002	56085002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	PSPH,NS,carcinoma,0,2	PSPH	NM_004577	exon6	c.G346A	p.V116I	GCTCTACAATACT		451	6	0.01	498	1	0.0020080321		23	2	77	0	0.00			
SUMF2	25870	mdanderson.org	37	7	56146188	56146188	+	Missense_Mutation	SNP	C	C	T	rs149838149	bycluster;by1000genomes	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_015411	exon8	c.C865T	p.R289W	CGGGCCCGGGTCA		86	5	0.06	70	1	0.0142857143	0.001			300	10	0.03			
WBSCR17	64409	mdanderson.org	37	7	71177063	71177063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_022479	exon11	c.G1729T	p.A577S	GGCCTGGCTGGCA		70	4	0.06	67	0	0				29	0	0.00			
GTF2IRD1	9569	mdanderson.org	37	7	74005172	74005172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001199207	exon24	c.A2513G	p.N838S	GCCTGAACCGGCC		56	3	0.05	74	0	0				182	0	0.00			
ADCK2	90956	broad.mit.edu	37	7	140373547	140373548	+	In_Frame_Ins	INS	-	-	ACCTCAGGCCCA	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	ADCK2	NM_052853	exon1	c.417_418insACCTCAGGCCCA	p.E139delinsETSGP	CACCGAGACCTCA		91	7	0.08	118	0	0		37		73	0	0.00			
ZNF398	0	broad.mit.edu	37	7	148876752	148876752	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	ZNF398	NM_170686	exon6	c.T1788G	p.G596G	TGGGGGTGATAGT		59	12	0.20	68	9	0.1323529412		54		24	0	0.00			
.	0	bcgsc.ca	37	8	56962832	56962832	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	TTCAGTATGTCTA		223	0	0.00	188	0	0				45	0	0.00			
.	0	bcgsc.ca	37	9	44402012	44402012	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	GCGGAGCGCCCGG		57	9	0.16	77	7	0.0909090909				25	3	0.12			
WNK2	65268	mdanderson.org	37	9	96055381	96055381	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_006648	exon22	c.C5634A	p.S1878S	GTCGTCCTACATC		47	3	0.06	57	0	0				82	0	0.00			
LRRC37A5P	0	broad.mit.edu	37	9	114370698	114370698	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	AGTGAGAAAAAAA		6	2	0.33	8	0	0				0	0				
DFNB31	25861	bcgsc.ca	37	9	117185777	117185777	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	DFNB31	NM_001173425	exon7	c.C1443A	p.G481G	AATGGTGCCTCTC		89	1	0.01	102	0	0		100		74	0	0.00			
TOR2A	27433	mdanderson.org	37	9	130495633	130495633	+	Missense_Mutation	SNP	C	C	A	rs564754	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_130459	exon3	c.G624T	p.W208C	GCCCCCCCACTGT		97	3	0.03	118	0	0				19	0	0.00			
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	139370740	139370740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_014866	exon3	c.C1328A	p.T443K	CTCGCTGTGTCAC		128	74	0.58	137	0	0				95	56	0.59			
MAMDC4	158056	mdanderson.org	37	9	139752857	139752857	+	Missense_Mutation	SNP	T	T	G	rs374940023	alternate_allele	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_206920	exon22	c.T2680G	p.C894G	GGTTCCTGTGATT		17	2	0.12	16	0	0				28	0	0.00			
ND4	4538	broad.mit.edu	37	MT	11014	11014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	ENST00000361381	exon1	c.C255T	p.S85S	CTTATCCAGTGAA		3	3	1.00	14	0	0				0	0				
PTCHD1	139411	broad.mit.edu	37	X	23398203	23398203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	PTCHD1	NM_173495	exon2	c.G847T	p.A283S	ACCATGGCCATCC		194	5	0.03	112	0	0		213		0	0				
