Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PLCH2	9651	broad.mit.edu	37	1	2436149	2436149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PLCH2	NM_014638	exon22	c.G3748T	p.V1250L	TGCCCCGTGGCTG		90	3	0.03	76	0	0		131		3	0	0.00			
ZBTB48	3104	broad.mit.edu;mdanderson.org	37	1	6647661	6647661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	ZBTB48	NM_005341	exon7	c.G1348T	p.G450C	CGGAATGGCCTGC		66	4	0.06	71	0	0		33		57	0	0.00			
SDC3	9672	hgsc.bcm.edu	37	1	31347395	31347395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_014654	exon4	c.A911G	p.E304G	TCTGGCTCATCCC		88	4	0.05	113	0	0				23	0	0.00			
SH3D21	79729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36775175	36775175	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001162530	exon10	c.G753A	p.V251V	GAAAGTGGTATCT		65	10	0.15	60	0	0				17	7	0.41			
HCN3	57657	broad.mit.edu;mdanderson.org	37	1	155258014	155258014	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	HCN3	NM_020897	exon8	c.T2085C	p.G695G	GCTGGGTCCCCCT		32	3	0.09	35	1	0.0285714286		74		0	0				
GON4L	54856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155733205	155733205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001037533	exon22	c.G4624T	p.D1542Y	TTTCATCCTCTTT		101	6	0.06	80	0	0				47	13	0.28			
PAPPA2	60676	broad.mit.edu	37	1	176671868	176671868	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PAPPA2	NM_020318	exon9	c.C3362G	p.S1121X	AGGTGTCAGAGTG		43	9	0.21	52	3	0.0576923077		665		0	0				
OBSCN	84033	mdanderson.org	37	1	228559278	228559278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001271223	exon105	c.G23670T	p.Q7890H	GGAGCAGGCCACC		35	3	0.09	27	0	0				2	0	0.00			
RYR2	6262	mdanderson.org	37	1	237789089	237789089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001035	exon40	c.G6151T	p.D2051Y	GAGAGTGACTCCA		46	3	0.07	60	0	0				0	0				
.	646309	bcgsc.ca;mdanderson.org	37	10	36812187	36812187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	.	.	.	.	AAGGTGGCAGCAA		425	24	0.06	453	0	0				89	0	0.00			
.	0	bcgsc.ca	37	10	65929122	65929122	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	.	.	.	.	GCTCTTGTGAACT		218	12	0.06	231	0	0				17	0	0.00			
CNNM1	26507	mdanderson.org	37	10	101089340	101089340	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	CNNM1_ENST00000356713,right_upper_lobe,carcinoma,0,1	CNNM1_ENST00000356713	NM_020348	exon1	c.G196T	p.E66X	GCCGCCGAAGGCA		21	3	0.14	22	0	0		0	1	0	0				
HPS6	79803	mdanderson.org	37	10	103826173	103826173	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_024747	exon1	c.T942C	p.S314S	GGGGTCTGCAGCC		45	3	0.07	37	0	0				22	0	0.00			
PPRC1	23082	mdanderson.org	37	10	103892852	103892852	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_015062	exon1	c.C27T	p.D9D	GAGAGACGGAGTC		19	3	0.16	22	0	0				7	0	0.00			
FAM160A2	84067	mdanderson.org	37	11	6245294	6245294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_032127	exon3	c.G323A	p.R108H	AACACACGGGTCA		75	4	0.05	81	0	0				12	0	0.00			
HNRNPUL2	221092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62490079	62490079	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	HNRNPUL2,NS,carcinoma,-1,1	HNRNPUL2	NM_001079559	exon6	c.C1089T	p.C363C	AGCAAAGCAGCCA		148	15	0.10	180	0	0		-1	1	121	29	0.24			
C11orf68	83638	mdanderson.org	37	11	65685142	65685142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001135635	exon2	c.C670T	p.R224C	CCAAGCGGTCCGT		55	3	0.05	68	0	0				106	0	0.00			
CST6	1474	mdanderson.org	37	11	65779678	65779678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001323	exon1	c.G163A	p.A55T	CAGGCGGCCGTGG		40	3	0.08	42	0	0				0	0				
C11orf73	51501	broad.mit.edu;mdanderson.org	37	11	86013506	86013506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	C11orf73	NM_016401	exon1	c.G16T	p.V6L	TGCTTGGTGGCGG		58	4	0.07	53	0	0		9		162	0	0.00			
FOLH1B	219595	broad.mit.edu	37	11	89403957	89403958	+	RNA	INS	-	-	T	rs36065337	bycluster;by1000genomes	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	FOLH1B	.	.	.	.	TTCTGAATTTTTT		6	3	0.50	7	0	0		93		0	0				
ZC3H12C	85463	mdanderson.org	37	11	110035632	110035632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_033390	exon6	c.G1822A	p.E608K	AGCCCTGAAAGGC		84	4	0.05	98	0	0				1	0	0.00			
KCNJ5	3762	broad.mit.edu	37	11	128781827	128781827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	KCNJ5,NS,carcinoma,+1,1	KCNJ5	NM_000890	exon2	c.G659T	p.R220L	TGTTCCGGGTGGG		116	4	0.03	137	0	0		560	1	7	0	0.00			
PRB3	5544	broad.mit.edu	37	12	11420652	11420652	+	RNA	SNP	C	C	T	rs74786167	bycluster;byfrequency	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PRB3	NM_006249	exon3	c.G531A	p.P177P	ATGAGGCGGGGGA		343	13	0.04	251	3	0.0119521912		84		6	0	0.00			
DDX11	1663	broad.mit.edu	37	12	31237980	31237980	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	DDX11	NM_030653	exon5	c.G558A	p.R186R	TGAGCGGCTGGAG		531	6	0.01	414	2	0.0048309179		188		60	0	0.00			
MRPS31P5	100887750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52741936	52741936	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	.	.	.	.	TTCTTCCTTGTGA		65	8	0.12	71	0	0				4	0	0.00			
SAMD4A	23034	mdanderson.org	37	14	55034821	55034821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001161576	exon1	c.A187G	p.N63D	GAGGCCAACAGCC		11	2	0.18	13	0	0				5	0	0.00			
RBM25	58517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73577750	73577750	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_021239	exon15	c.C1904G	p.P635R	CAACACCTAACAC		90	6	0.07	60	0	0				116	30	0.26			
ATXN3	4287	hgsc.bcm.edu	37	14	92537354	92537355	+	In_Frame_Ins	INS	-	-	CTGCTGCTGCTGCTGCTG	rs76478261	alternate_allele	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	ATXN3,NS,carcinoma,0,7	ATXN3	NM_004993	exon10	c.916_917insCAGCAGCAGCAGCAGCAG	p.G306delinsQQQQQQG	GGTCCCCCTGCTG		59	0	0.00	79	0	0		46		107	0	0.00			
HERC1	8925	hgsc.bcm.edu;broad.mit.edu	37	15	63904544	63904545	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	CG	CG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	HERC1	NM_003922	exon77	c.14306_14307del	p.4769_4769del	AGCACCCGCTCCT		172	16	0.09	177	0	0		624		73	0	0.00			
WHAMM	123720	mdanderson.org	37	15	83478717	83478717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001080435	exon1	c.G239A	p.G80D	GGGCCGGCCTGCT		10	2	0.20	12	0	0				0	0				
PRSS33	260429	mdanderson.org	37	16	2835065	2835065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_152891	exon5	c.C622A	p.R208S	CAATGCGCTCAGC		29	3	0.10	30	0	0				27	0	0.00			
SMG1	23049	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	18844390	18844390	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	SMG1	NM_015092	exon51	c.C8664T	p.D2888D	AAGACCGTCCAGT		205	7	0.03	196	0	0		401		4	0	0.00			
CD19	930	broad.mit.edu	37	16	28944670	28944670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	CD19	NM_001178098	exon4	c.G675T	p.L225F	GTCATTGCTGAGC		109	4	0.04	114	0	0		65		1	0	0.00			
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30734457	30734457	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_006662	exon24	c.C4066G	p.P1356A	CCCACACCTACTC		129	9	0.07	120	0	0				9	1	0.11			
FBXL19	54620	mdanderson.org	37	16	30953750	30953750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001099784	exon9	c.G1580A	p.G527D	CCCTGGGCTCAGC		44	3	0.07	50	0	0				62	0	0.00			
CES2	8824	hgsc.bcm.edu;broad.mit.edu	37	16	66977848	66977848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_003869	exon12	c.A1792G	p.R598G	GCCCACAGGCTCC		98	4	0.04	104	0	0				42	0	0.00			
KRT37	8688	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	39578411	39578411	+	Silent	SNP	G	G	A	rs147477673		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	KRT37	NM_003770	exon5	c.C930T	p.S310S	CTCCTCGGAGCAG		136	11	0.08	116	1	0.0086206897		61		0	0				
PTGES3L-AARSD1	100885850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	41108298	41108298	+	Missense_Mutation	SNP	T	T	G	rs199585384	alternate_allele	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001136042	exon11	c.A1108C	p.I370L	CCCGAATGGGCCC		112	5	0.04	118	0	0				236	60	0.25			
COG1	9382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71204453	71204453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_018714	exon14	c.G2806T	p.V936F	TGGCAGGTTGTCC		65	7	0.11	77	0	0				178	32	0.18			
ZNF236	7776	mdanderson.org	37	18	74580747	74580747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_007345	exon4	c.G464A	p.C155Y	ATGCCTGCAAGGC		33	3	0.09	33	0	0				1	0	0.00			
HNRNPM	4670	mdanderson.org	37	19	8550553	8550553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_005968	exon14	c.C1241T	p.A414V	GGGGTGCCGGCAT		13	3	0.23	27	0	0				509	1	0.00			
LRP3	4037	mdanderson.org	37	19	33696438	33696438	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_002333	exon5	c.C762T	p.C254C	GGCGTGCGGCCGG		31	2	0.06	33	0	0				17	0	0.00			
WDR87	83889	hgsc.bcm.edu;broad.mit.edu	37	19	38377122	38377124	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	TTC	TTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	WDR87	NM_031951	exon6	c.7071_7073del	p.2357_2358del	GGCTCTTTCTTCT		232	15	0.06	257	0	0		191		0	0				
ZNF880	400713	hgsc.bcm.edu	37	19	52887146	52887146	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	ZNF880,colon,carcinoma,-1,1	ZNF880	NM_001145434	exon4	c.A313T	p.K105X	TCTCTTAAAAATC		242	11	0.05	276	0	0		-1	1	27	0	0.00			
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33012134	33012134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_017735	exon16	c.G1916A	p.S639N	TCACCAGCACTGA		135	7	0.05	131	0	0				77	23	0.30			
HK2	3099	mdanderson.org	37	2	75113795	75113795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_000189	exon15	c.G2214T	p.K738N	CGGCAAGCAGAGG		41	3	0.07	42	0	0				63	0	0.00			
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80772149	80772149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001164883	exon10	c.G1333T	p.V445L	GAAGGGGTGAAAT		76	8	0.11	78	0	0				0	0				
PGAP1	80055	broad.mit.edu	37	2	197711758	197711758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PGAP1	NM_024989	exon22	c.C2119A	p.L707I	AAAGAAGTCTCAC		292	6	0.02	299	0	0		84		1	0	0.00			
AOX1	316	broad.mit.edu	37	2	201485446	201485446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	AOX1	NM_001159	exon17	c.C1778T	p.A593V	AGCATGCCACGGG		230	5	0.02	222	0	0		152		1	0	0.00			
DEFB125	245938	mdanderson.org	37	20	77023	77023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_153325	exon2	c.C436T	p.P146S	ACTATGCCACCAC		47	3	0.06	51	0	0				0	0				
.	0	broad.mit.edu	37	20	29572402	29572403	+	RNA	INS	-	-	AC	rs200824028	alternate_allele	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	.	.	.	.	GAACGGGACACAC		7	3	0.43	5	0	0				0	0				
TRPC4AP	26133	mdanderson.org	37	20	33609143	33609143	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_015638	exon9	c.T1068C	p.P356P	TGGAGGAGGGAAC		48	3	0.06	53	0	0				41	0	0.00			
MIR3648	0	broad.mit.edu	37	21	9825838	9825839	+	RNA	INS	-	-	GCG	rs372061766	bycluster	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	.	.	.	.	CGCGACTGCGGCG		8	6	0.75	6	0	0				0	0				
GGT1	2678	broad.mit.edu	37	22	25016921	25016921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	GGT1	NM_013430	exon9	c.A617G	p.E206G	AGGGGGAGAGACT		277	6	0.02	319	1	0.0031347962		68		33	1	0.03			
TPST2	8459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	26936904	26936906	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	TPST2	NM_003595	exon3	c.692_694del	p.231_232del	GCACTTCTCCTTG		102	10	0.10	105	0	0		23		589	0	0.00			
AP1B1	162	mdanderson.org	37	22	29730383	29730383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001127	exon17	c.T2180C	p.M727T	GCCTTCATGGCTG		54	3	0.06	58	0	0				97	0	0.00			
MTFP1	51537	mdanderson.org	37	22	30822783	30822783	+	Missense_Mutation	SNP	G	G	T	rs373693838		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_016498	exon2	c.G146T	p.S49I	TGGCCAGCTCCTA		44	3	0.07	32	0	0				68	0	0.00			
PLA2G6	8398	broad.mit.edu	37	22	38565263	38565263	+	Silent	SNP	G	G	A	rs150718378	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PLA2G6	NM_003560	exon2	c.C171T	p.C57C	CAGGACGCAGTCC		223	6	0.03	242	1	0.0041322314		54		13	0	0.00			
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41573417	41573417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001429	exon31	c.C5702T	p.A1901V	GTAAGGCAGCAGG		215	23	0.11	172	0	0				59	22	0.37			
SBF1	6305	broad.mit.edu;mdanderson.org	37	22	50906112	50906112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	SBF1_ENST00000380817,NS,carcinoma,0,2	SBF1	NM_002972	exon4	c.C287A	p.T96K	ACGCGCGTCGTTT		78	4	0.05	83	0	0		211	2	12	0	0.00			
NEK10	152110	broad.mit.edu	37	3	27350472	27350472	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	NEK10	NM_199347	exon11	c.C661A	p.R221R	TATCTCGGGCACC		463	4	0.01	379	0	0		271		0	0				
ARHGAP31	57514	broad.mit.edu	37	3	119120673	119120673	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	ARHGAP31	NM_020754	exon10	c.A1074G	p.K358K	AGGAAAAGAAACC		170	5	0.03	184	0	0		175		4	0	0.00			
CASR	846	mdanderson.org	37	3	121981253	121981253	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001178065	exon4	c.G1371T	p.A457A	TGAGGCGTGGCAG		28	3	0.11	34	0	0				0	0				
IFT122	55764	mdanderson.org	37	3	129239065	129239065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_052985	exon31	c.G3836T	p.C1279F	ATGGCTGCTGCCC		47	3	0.06	38	0	0				68	0	0.00			
LRRC66	339977	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	52861139	52861139	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001024611	exon4	c.C2049T	p.N683N	TTCCTTGTTAGCA		80	7	0.09	80	0	0				0	0				
CNOT6L	246175	mdanderson.org	37	4	78678099	78678099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_144571	exon5	c.C407A	p.P136H	GATAAAGGATTGC		49	3	0.06	56	0	0				0	0				
CDS1	1040	broad.mit.edu;mdanderson.org	37	4	85560085	85560085	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	CDS1	NM_001263	exon9	c.T819C	p.P273P	GTCTCCTAAAAAG		97	4	0.04	87	0	0		58		0	0				
DAB2	1601	bcgsc.ca;mdanderson.org	37	5	39376964	39376964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	DAB2	NM_001343	exon12	c.C1925A	p.P642Q	CCAAGTGGGTCTA		82	5	0.06	130	0	0		124		20	0	0.00			
PCDHGB1	0	broad.mit.edu	37	5	140729996	140729996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PCDHGB1	NM_018922	exon1	c.C169T	p.R57W	AGTGTCCGGGAGT		149	4	0.03	165	0	0		198		1	0	0.00			
RUNX2	860	hgsc.bcm.edu;mdanderson.org	37	6	45390457	45390457	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001024630	exon3	c.G186A	p.Q62Q	GCAGCAGCAGCAG		48	8	0.17	45	0	0				0	0				
MMS22L	253714	broad.mit.edu	37	6	97609923	97609923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	MMS22L	NM_198468	exon22	c.C3340A	p.L1114I	CAGGGAGGAGTAG		109	3	0.03	151	0	0		102		6	0	0.00			
EIF3B	8662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	2404052	2404052	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001037283	exon6	c.C1045T	p.L349L	ACCTACCTGGCTA		100	4	0.04	111	0	0				706	126	0.18			
COBL	23242	broad.mit.edu;mdanderson.org	37	7	51095412	51095412	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	COBL	NM_015198	exon10	c.C3381G	p.R1127R	CACCTTGCGTAGT		141	5	0.04	138	0	0		167		21	3	0.14	rescued with RNA-seq		
.	340221	bcgsc.ca	37	7	57076653	57076653	+	RNA	SNP	T	T	C	rs111384738	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	.	.	.	.	CCGCAGTGCGCGC		105	9	0.09	92	0	0				0	0				
CCT6P3	0	broad.mit.edu	37	7	64530103	64530103	+	RNA	SNP	G	G	A	rs369683052	bycluster	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	.	.	.	.	TGCTTGGGACATG		37	3	0.08	44	0	0				13	0	0.00			
CACNA2D1	781	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	81693631	81693631	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	CACNA2D1	NM_000722	exon9	c.T768A	p.I256I	CACCAGAATAAGC		368	17	0.05	381	1	0.0026246719		191		0	0				
CAV1	857	ucsc.edu	37	7	116166628	116166628	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	CAV1	NM_001753	exon2	c.C80G	p.P27R	ACAAGCCCAACAA		84	6	0.07	115	0	0		13		301	89	0.30			
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	126086148	126086148	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001127323	exon10	c.G2709C	p.K903N	CCCGCTCTTGACC		66	5	0.08	97	0	0				0	0				
PYCRL	65263	broad.mit.edu;bcgsc.ca	37	8	144689164	144689175	+	In_Frame_Del	DEL	CCAAGATGTGTT	CCAAGATGTGTT	-	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	CCAAGATGTGTT	CCAAGATGTGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PYCRL	NM_023078	exon3	c.320_331del	p.107_111del	CGGACACCAAGAT		277	11	0.04	269	0	0		14		11	0	0.00			
OPLAH	26873	mdanderson.org	37	8	145114512	145114512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_017570	exon3	c.T353C	p.L118P	TCAAAGAGGTCCC		53	3	0.06	55	0	0				4	0	0.00			
MFSD3	113655	mdanderson.org	37	8	145735026	145735026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_138431	exon1	c.T310G	p.L104V	GCGGGGTTGCTGC		14	6	0.43	10	6	0.6				11	5	0.45			
PRSS3	5646	broad.mit.edu;bcgsc.ca	37	9	33797853	33797855	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	ACA	ACA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PRSS3	NM_007343	exon3	c.398_400del	p.133_134del	GAGAGCACAACAT		101	10	0.10	142	0	0		79		0	0				
.	0	broad.mit.edu	37	9	66461548	66461549	+	RNA	INS	-	-	C	rs112610171	bycluster	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	.	.	.	.	TAAGGAGTTTTGG		7	3	0.43	5	0	0				0	0				
COL27A1	85301	broad.mit.edu	37	9	117037945	117037945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	COL27A1	NM_032888	exon37	c.A3614G	p.D1205G	AGGGGGACAGGGG		105	5	0.05	83	1	0.0120481928		200		20	0	0.00			
RAPGEF1	2889	mdanderson.org	37	9	134497191	134497191	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_198679	exon11	c.C1900A	p.R634R	GCTGCCGCTGCTT		55	3	0.05	63	0	0				32	0	0.00			
MIR223	407008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	65238810	65238810	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	.	.	.	.	GCGGCACATGCTT		166	28	0.17	168	0	0				1	0	0.00			
