Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
DNAJC16	23341	mdanderson.org	37	1	15892415	15892415	+	Missense_Mutation	SNP	A	A	T	rs2236215	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_015291	exon12	c.A1600T	p.R534W	TTTAGGAGGGAAA		99	3	0.03	193	0	0				21	0	0.00			
.	0	broad.mit.edu	37	1	16958545	16958546	+	RNA	INS	-	-	C	rs113787707	bycluster	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	.	.	.	.	TCAGTTTCCCATC		12	3	0.25	23	0	0				2	0	0.00			
L1TD1	54596	mdanderson.org	37	1	62676994	62676994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001164835	exon5	c.G2548T	p.V850F	GATTATGTTTTGC		86	6	0.07	197	0	0				999	0	0.00			
CD53	963	mdanderson.org	37	1	111440512	111440512	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_000560	exon7	c.G586T	p.E196X	GTGATTGAGGTAA		24	3	0.13	35	0	0				179	0	0.00			
DUSP27	92235	mdanderson.org	37	1	167097040	167097040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001080426	exon5	c.G2672T	p.S891I	CTGACAGTGCCAT		22	2	0.09	47	1	0.0212765957				0	0				
RBBP5	5929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205084037	205084037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_005057	exon3	c.A98G	p.N33S	CACCTGTTAAAGG		200	28	0.14	375	0	0				23	8	0.35			
LARP4B	23185	mdanderson.org	37	10	861005	861005	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_015155	exon16	c.C1701A	p.L567L	TGCACTGAGGGTC		52	3	0.06	63	0	0				66	0	0.00			
IPMK	253430	mdanderson.org	37	10	59997522	59997522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_152230	exon2	c.A244G	p.R82G	GGCCCCTTGGAGG		58	3	0.05	80	0	0				9	0	0.00			
MKI67	4288	mdanderson.org	37	10	129914216	129914216	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_002417	exon7	c.A456G	p.S152S	ATTTCCTGAAACT		35	3	0.09	78	1	0.0128205128				12	0	0.00			
SLC43A1	8501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	57254608	57254608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001198810	exon14	c.T1493C	p.F498S	GCCATGAAAAGTG		49	4	0.08	81	0	0				471	101	0.21			
OR4D10	390197	mdanderson.org	37	11	59245149	59245149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001004705	exon1	c.G247T	p.V83L	GTTCTGGTGGACC		61	3	0.05	157	0	0				0	0				
ZP1	22917	mdanderson.org	37	11	60642677	60642677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_207341	exon11	c.G1730T	p.G577V	CAGTGGGCTTTGA		39	3	0.08	53	0	0				0	0				
PITPNM1	9600	mdanderson.org	37	11	67267769	67267769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001130848	exon6	c.G764A	p.R255H	GCCATGCGCTGGG		49	3	0.06	61	0	0				38	0	0.00			
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	100211902	100211902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	CNTN5_ENST00000524871,bladder,carcinoma,-2,2	CNTN5_ENST00000524871	NM_001243270	exon22	c.C2995A	p.P999T	GTCATACCATTAG		114	10	0.09	272	0	0		-2	2	0	0				
ARHGEF12	23365	mdanderson.org	37	11	120302598	120302598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_015313	exon11	c.G902T	p.R301L	CTTCTCGGCCCAG		47	3	0.06	116	0	0				11	0	0.00			
PPFIA2	8499	mdanderson.org	37	12	81671111	81671111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_003625	exon28	c.C3295A	p.Q1099K	CATGTTGGCTTGC		45	3	0.07	81	0	0				0	0				
.	0	broad.mit.edu	37	12	110868215	110868216	+	RNA	DEL	GT	GT	-	rs113592903	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	GT	GT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	.	.	.	.	GTGTGCGTGTGTG		9	3	0.33	5	0	0				0	0				
DDX24	57062	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	94545823	94545823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	DDX24	NM_020414	exon2	c.A266G	p.E89G	TTTCCCTCCTCCT		119	7	0.06	148	1	0.0067567568		82		325	0	0.00			
SV2B	9899	mdanderson.org	37	15	91809917	91809917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_014848	exon8	c.A1114G	p.K372E	ATTTTCAAGCAGG		46	3	0.07	66	0	0				1	0	0.00			
TTC23	64927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99740253	99740253	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001040657	exon7	c.A630G	p.Q210Q	AGCTGCTTGATAG		74	18	0.24	147	0	0				5	2	0.40			
PPL	5493	mdanderson.org	37	16	4949240	4949240	+	Missense_Mutation	SNP	C	C	T	rs61734749	bycluster;byfrequency;by1000genomes	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_002705	exon7	c.G752A	p.R251H	CGCCGGCGGCTGG		51	3	0.06	49	0	0	0.009			2	0	0.00			
DNAH3	55567	mdanderson.org	37	16	21132080	21132080	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	DNAH3_ENST00000261383,bladder,carcinoma,-2,4	DNAH3_ENST00000261383	NM_017539	exon11	c.G1680A	p.A560A	GGCAGCCGCGTGC		30	2	0.07	74	0	0		-2	4	0	0				
ARMC5	79798	mdanderson.org	37	16	31470916	31470916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001105247	exon1	c.G71T	p.G24V	CGGCCGGGGAGGC		22	2	0.09	23	0	0				3	0	0.00			
LOC643802	0	broad.mit.edu	37	16	53404542	53404543	+	RNA	INS	-	-	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	.	.	.	.	CTTTCTCAAACTT		6	2	0.33	16	1	0.0625				0	0				
HSF4	3299	mdanderson.org	37	16	67201672	67201672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	HSF4,NS,carcinoma,-2,1	HSF4	NM_001040667	exon11	c.G904T	p.D302Y	GGGGGGGATGGCG		29	3	0.10	52	0	0		-2	1	0	0				
PLSCR3	57048	mdanderson.org	37	17	7296551	7296551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_020360	exon5	c.G419A	p.R140H	GCCAGGCGGACAC		20	3	0.15	20	0	0				34	0	0.00			
CUEDC1	404093	broad.mit.edu	37	17	55962851	55962851	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	CUEDC1	NM_001271875	exon2	c.A75G	p.G25G	CGTGCCTCCCCCG		34	10	0.29	25	7	0.28		37		2	0	0.00			
MIER2	54531	broad.mit.edu	37	19	327235	327235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	MIER2	NM_017550	exon5	c.C391T	p.L131F	CTGAAAGCAAATC		95	11	0.12	101	6	0.0594059406		51		202	0	0.00			
SEMA6B	10501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4546434	4546434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_032108	exon15	c.G1649A	p.G550D	CAGGAGCCGTCGG		122	7	0.06	98	0	0				130	19	0.15			
TIMM44	10469	broad.mit.edu	37	19	7998441	7998441	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	TIMM44	NM_006351	exon7	c.T698G	p.V233G	AGCACGACCCCCA		226	25	0.11	159	11	0.0691823899		47		220	1	0.00			
RFX1	5989	mdanderson.org	37	19	14091461	14091461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_002918	exon6	c.C662T	p.A221V	GCCCCGGCTGTCT		26	3	0.12	25	0	0				17	0	0.00			
ARHGAP33	115703	broad.mit.edu	37	19	36268760	36268760	+	Translation_Start_Site	SNP	G	G	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	ARHGAP33	NM_052948	exon3	c.G139A	p.A47T	CGGCTGGCTGACT		156	4	0.03	170	0	0		102		29	0	0.00			
SYMPK	8189	broad.mit.edu	37	19	46319285	46319285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	SYMPK	NM_004819	exon26	c.T3511C	p.S1171P	AGGGGGAGGAAGA		125	5	0.04	115	3	0.0260869565		104		339	3	0.01			
WDR43	23160	mdanderson.org	37	2	29158442	29158442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_015131	exon12	c.C1493A	p.P498H	GGATGCCCCTGCA		44	3	0.07	117	0	0				116	0	0.00			
SIRPA	140885	mdanderson.org	37	20	1876144	1876144	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001040022	exon2	c.G51T	p.L17L	CTGCCTGCTGCTC		27	2	0.07	30	0	0				8	0	0.00			
PANK2	80025	mdanderson.org	37	20	3888898	3888898	+	Silent	SNP	G	G	A	rs78631398	bycluster;by1000genomes	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_153638	exon2	c.G954A	p.A318A	TGGAGCGTACAAA		33	3	0.09	43	0	0	0.001			46	0	0.00			
PAX1	5075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	21687362	21687362	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	PAX1_ENST00000398485,NS,carcinoma,0,2	PAX1_ENST00000398485	NM_006192	exon2	c.C573A	p.I191I	TGGCATCTTTGCC		87	21	0.24	59	0	0		0	2	0	0				
BAGE	85319	broad.mit.edu	37	21	11072388	11072389	+	RNA	INS	-	-	T	rs140345115	bycluster	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	.	.	.	.	TCACGCCGTGATT		7	2	0.29	4	0	0				0	0				
SLC37A1	54020	mdanderson.org	37	21	43959638	43959638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_018964	exon7	c.C367T	p.R123C	GGGGAGCGCCTGC		143	6	0.04	163	0	0				32	0	0.00			
CECR1	51816	broad.mit.edu	37	22	17684613	17684613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	CECR1	NM_017424	exon3	c.C593A	p.T198K	TGGTTTGTGTAAA		151	5	0.03	153	0	0		77		67	0	0.00			
CDC45	8318	mdanderson.org	37	22	19484956	19484956	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001178010	exon9	c.G735T	p.L245L	GGACCTGAATGAC		54	3	0.06	64	0	0				119	1	0.01			
PIWIL3	440822	broad.mit.edu	37	22	25145722	25145722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	PIWIL3	NM_001008496	exon10	c.A1154G	p.K385R	AGGCCCTTTTTCC		128	4	0.03	252	1	0.003968254		115		0	0				
HSCB	150274	broad.mit.edu	37	22	29138096	29138096	+	Missense_Mutation	SNP	A	A	G	rs200681712		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	HSCB	NM_172002	exon1	c.A13G	p.R5G	CGGGGGAGAGCCG		62	20	0.32	64	19	0.296875		16		8	1	0.13			
CDC42EP1	11135	broad.mit.edu	37	22	37962631	37962631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	CDC42EP1	NM_152243	exon2	c.T275G	p.V92G	GGAGGGTGGGGGC		183	27	0.15	227	12	0.0528634361		53		38	2	0.05			
FBLN2	2199	broad.mit.edu;mdanderson.org	37	3	13612701	13612701	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	FBLN2	NM_001998	exon2	c.G846A	p.E282E	AGAAGAGGAGGAG		70	5	0.07	71	1	0.014084507		137		12	0	0.00			
GPD1L	23171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	32201135	32201135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_015141	exon7	c.C928T	p.R310C	GTGTACCGCATCC		160	11	0.07	382	0	0				11	1	0.09			
ITIH4	3700	mdanderson.org	37	3	52863240	52863240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_002218	exon2	c.C146T	p.A49V	GTGTGGGCAAATC		86	5	0.06	120	0	0				5	0	0.00			
C3orf55	152078	mdanderson.org	37	3	157271080	157271080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001130002	exon2	c.G34A	p.A12T	AACACTGCAAACT		51	3	0.06	103	0	0				0	0				
MTTP	4547	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	100529976	100529976	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	MTTP	NM_000253	exon13	c.G1611C	p.K537N	TGAAAAGACTGTG		46	4	0.09	122	0	0		127		0	0				
METTL14	57721	mdanderson.org	37	4	119621782	119621782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_020961	exon8	c.G723T	p.L241F	GGGGTTGGACCTT		50	3	0.06	144	0	0				15	0	0.00			
KLHL2	11275	bcgsc.ca;mdanderson.org	37	4	166231709	166231709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	KLHL2	NM_001161521	exon10	c.G1056T	p.M352I	AGGCATGGTCTAC		83	5	0.06	147	0	0		42		8	0	0.00			
RHOBTB3	22836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95067647	95067647	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	RHOBTB3,caecum,carcinoma,0,1	RHOBTB3	NM_014899	exon2	c.G87A	p.L29L	TTACCTGGGGAGA		315	25	0.08	292	0	0		0	1	26	4	0.15			
SRP19	7310	broad.mit.edu	37	5	112228537	112228537	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	ZRSR1_ENST00000391338,NS,carcinoma,-2,2	SRP19	.	.	.	.	GAATCCGAGAGAA		148	3	0.02	254	0	0		12	2	8	0	0.00			
ARSI	340075	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	149677844	149677844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	ARSI,NS,carcinoma,+2,2	ARSI	NM_001012301	exon2	c.C643T	p.R215C	TGGCGCGCTGGGC		62	5	0.08	94	0	0		2	2	9	2	0.22			
DNAH8	1769	mdanderson.org	37	6	38899770	38899770	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001206927	exon76	c.11457+1G>T	.	AAACAGGTAATCT		54	3	0.06	113	0	0				0	0				
SENP6	26054	mdanderson.org	37	6	76343405	76343405	+	Missense_Mutation	SNP	A	A	G	rs200483413		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001100409	exon4	c.A316G	p.I106V	AACCCAATTGGAC		50	3	0.06	105	0	0				52	0	0.00			
SAMD5	389432	broad.mit.edu	37	6	147830216	147830216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	SAMD5	NM_001030060	exon1	c.A152C	p.H51P	CCGCGCACCGCCG		60	20	0.33	73	19	0.2602739726		4		0	0				
WIPI2	26100	mdanderson.org	37	7	5266967	5266967	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001033518	exon10	c.G1005T	p.S335S	CTGCTCGCTAGCC		59	3	0.05	56	0	0				301	1	0.00			
GTF2IRD2P1	0	broad.mit.edu	37	7	72669801	72669802	+	RNA	INS	-	-	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	.	.	.	.	AATCTTGAAAAAA		478	0	0.00	738	0	0				0	0				
CROT	54677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	87004971	87004971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001143935	exon9	c.A764G	p.K255R	ACAAGAAGTGCCA		86	5	0.06	190	0	0				6	0	0.00			
.	26495	bcgsc.ca	37	7	141587600	141587600	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	.	.	.	.	TCTCCTACACCTA		32	4	0.13	42	0	0				0	0				
CLU	1191	mdanderson.org	37	8	27461858	27461858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001831	exon6	c.G884T	p.C295F	CGCAGGCAGCCCG		48	3	0.06	66	0	0				109	1	0.01			
.	0	broad.mit.edu	37	9	68405348	68405349	+	RNA	INS	-	-	T	rs140647636	bycluster	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	.	.	.	.	TTCTCAATAAATG		7	3	0.43	6	0	0				0	0				
SLC44A1	23446	mdanderson.org	37	9	108072110	108072110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_080546	exon3	c.G232T	p.A78S	TTGGAAGCAATAC		46	3	0.07	108	0	0				63	0	0.00			
AKNA	80709	mdanderson.org	37	9	117124711	117124711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_030767	exon8	c.A1891G	p.T631A	CAGGCGTCCCCTT		56	3	0.05	78	0	0				62	0	0.00			
COX1	4512	broad.mit.edu	37	MT	6164	6164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	ENST00000361624	exon1	c.C261T	p.I87I	AATAATCGGTGCC		29	6	0.21	11	0	0				0	0				
CTPS2	56474	broad.mit.edu	37	X	16685816	16685816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	CTPS2	NM_001144002	exon12	c.A1221G	p.I407M	AAACTCTATCACT		134	4	0.03	225	0	0		49		6	0	0.00			
PHF16	0	broad.mit.edu;bcgsc.ca	37	X	46857586	46857586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	PHF16	NM_001077445	exon4	c.G191T	p.S64I	CTGATAGCTATTA		55	5	0.09	87	0	0		72		1	0	0.00			
RBM10	8241	hgsc.bcm.edu	37	X	47030582	47030582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001204468	exon4	c.G552T	p.E184D	GGAGGAGGATGAG		60	4	0.07	70	0	0				3	0	0.00			
