Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
ACAP3	116983	broad.mit.edu	37	1	1229472	1229472	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	ACAP3	NM_030649	exon22	c.C2247A	p.T749T	TCACCCGGTGCGG		129	4	0.03	148	0	0		87		44	0	0.00			
MIB2	142678	mdanderson.org	37	1	1565765	1565765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_080875	exon20	c.G3068T	p.R1023L	AGGAACGCATCAC		28	3	0.11	43	0	0				50	0	0.00			
SLC2A5	6518	mdanderson.org	37	1	9101770	9101770	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001135585	exon5	c.C645T	p.S215S	GTGGTGGCTTTGG		45	3	0.07	69	0	0				0	0				
CROCC	9696	mdanderson.org	37	1	17298008	17298008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_014675	exon36	c.G5833T	p.V1945L	CTGGAGGTGGATG		10	2	0.20	9	0	0				64	0	0.00			
ATP8B2	57198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154321404	154321404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_020452	exon28	c.G3482T	p.G1161V	GCTCCGGCTATGC		196	70	0.36	139	0	0				113	32	0.28			
LYST	1130	broad.mit.edu	37	1	235922371	235922371	+	Missense_Mutation	SNP	C	C	T	rs147791378	bycluster;by1000genomes	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	LYST	NM_000081	exon23	c.G6782A	p.R2261H	GGCCAACGGCCAA		162	4	0.02	128	0	0		370		5	0	0.00			
ARMC3	219681	broad.mit.edu	37	10	23297852	23297852	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	ARMC3	NM_173081	exon16	c.A2037G	p.K679K	AGAAAAAGGATGG		335	5	0.01	355	0	0		102		0	0				
.	0	broad.mit.edu	37	10	48968566	48968566	+	RNA	SNP	A	A	G	rs80150874		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	GATAACAAACTGG		43	4	0.09	64	1	0.015625				0	0				
SPOCK2	9806	mdanderson.org	37	10	73822859	73822859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001244950	exon10	c.C1053A	p.S351R	ACCGCTGCTCTGG		54	3	0.06	97	0	0				49	0	0.00			
FBXO3	26273	broad.mit.edu	37	11	33772131	33772131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	FBXO3	NM_012175	exon8	c.C886A	p.L296I	AGCTAAGTTCTGG		159	4	0.03	151	0	0		37		33	0	0.00			
XRRA1	143570	mdanderson.org	37	11	74559215	74559215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_182969	exon15	c.C1649A	p.P550Q	CGCTCTGGGCTGA		37	3	0.08	44	0	0				14	0	0.00			
DSCAML1	57453	mdanderson.org	37	11	117389460	117389460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_020693	exon7	c.G1411A	p.V471I	ACGAGACGATGCG		37	3	0.08	41	0	0				0	0				
MLL	4297	mdanderson.org	37	11	118373743	118373743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001197104	exon27	c.G7136T	p.R2379M	GGCAAAGGAATGA		40	3	0.08	42	0	0				15	0	0.00			
.	0	broad.mit.edu	37	12	8718254	8718255	+	RNA	INS	-	-	A	rs35942136	bycluster;by1000genomes	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	TCACTGCAAAAAA		7	3	0.43	4	0	0				0	0				
PRH2	5555	broad.mit.edu	37	12	11083460	11083460	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	PRH2	NM_001110213	exon3	c.T300C	p.H100H	AGGCCATCCCCCT		1456	19	0.01	521	5	0.009596929		18		6	0	0.00			
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	TUBA1C,colon,carcinoma,0,1	TUBA1C	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG		326	27	0.08	296	22	0.0743243243		32	1	1333	803	0.60			
LARP4	113251	broad.mit.edu	37	12	50869341	50869341	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	LARP4	NM_052879	exon16	c.C1869T	p.C623C	AGTGTGCCAGAAG		142	4	0.03	133	0	0		58		64	0	0.00			
NACA	4666	broad.mit.edu	37	12	57112386	57112386	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	NACA	.	.	.	.	AGCTGGACCTCCT		62	5	0.08	69	2	0.0289855072		131		0	0				
RASSF3	283349	mdanderson.org	37	12	65004442	65004442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_178169	exon1	c.G30T	p.E10D	GGAGGAGGACGCC		43	3	0.07	40	0	0				13	0	0.00			
C1QTNF9	338872	hgsc.bcm.edu	37	13	24895902	24895902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	C1QTNF9,bladder,carcinoma,0,1	C1QTNF9	NM_178540	exon4	c.C998A	p.P333Q	GCAGCCCGTGACA		88	6	0.07	109	2	0.0183486239		0	1	1	0	0.00			
PCCA	5095	mdanderson.org	37	13	100959515	100959515	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001178004	exon15	c.1353+1G>T	.	TCAAAAGTTAGTT		43	3	0.07	53	0	0				0	0				
PCK2	5106	mdanderson.org	37	14	24566126	24566126	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001018073	exon2	c.T55C	p.L19L	AGCCCCTTGGGCT		62	3	0.05	50	0	0				49	0	0.00			
MIA2	0	broad.mit.edu	37	14	39716705	39716705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	MIA2	NM_054024	exon4	c.G927T	p.W309C	TGGTTGGTTTGGT		97	3	0.03	79	0	0		82		1	0	0.00			
ATPBD4	89978	mdanderson.org	37	15	35703064	35703064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	ATPBD4,NS,carcinoma,+1,1	ATPBD4	NM_080650	exon6	c.T539C	p.L180P	TGATCCAGGGTTT		22	3	0.14	36	0	0		1	1	18	0	0.00			
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40949336	40949336	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_170589	exon24	c.A6659T	p.H2220L	CCCAGCATCAGTT		220	49	0.22	146	0	0				34	14	0.41			
IGFALS	3483	broad.mit.edu	37	16	1840814	1840814	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	IGFALS	NM_001146006	exon2	c.T1719G	p.G573G	GGGGTTACCCTCC		56	13	0.23	52	8	0.1538461538		29		2	0	0.00			
MT3	4504	bcgsc.ca	37	16	56623785	56623785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	MT3	NM_005954	exon2	c.G35T	p.G12V	TAGGTGGCTCCTG		146	6	0.04	56	0	0		6		1	0	0.00			
CMTM2	146225	broad.mit.edu	37	16	66613759	66613759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	CMTM2	NM_001199317	exon1	c.G249T	p.W83C	GTTCTGGCTCTTG		228	4	0.02	82	0	0		33		1	0	0.00			
LOC283922	0	broad.mit.edu	37	16	74372644	74372644	+	RNA	SNP	A	A	G	rs2549260	bycluster	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	CTTGTCAGGGGGA		79	4	0.05	114	2	0.0175438596				5	0	0.00			
PKD1L2	114780	broad.mit.edu	37	16	81188170	81188170	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	PKD1L2	.	.	.	.	TCTTCCTTTTTTT		9	5	0.56	6	0	0		361		0	0				
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15973655	15973655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001190440	exon30	c.C4385T	p.S1462F	TGCCGGGAACGCA		186	63	0.34	184	0	0				54	21	0.39			
.	0	broad.mit.edu	37	17	16832430	16832430	+	RNA	DEL	C	C	-	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	CCCCCACCCCCAA		6	2	0.33	4	0	0				0	0				
MED1	5469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37571338	37571338	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_004774	exon16	c.C1440T	p.Y480Y	CCCTTTGTAGAGT		198	57	0.29	165	0	0				25	13	0.52			
CNP	1267	mdanderson.org	37	17	40125905	40125905	+	Missense_Mutation	SNP	G	G	T	rs372142717	alternate_allele	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_033133	exon4	c.G1229T	p.R410L	GTAGCCGGAAGGG		17	2	0.12	22	0	0				349	0	0.00			
ITGA2B	3674	mdanderson.org	37	17	42463057	42463057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_000419	exon4	c.G436A	p.V146I	CTAGGACGTTCCA		41	3	0.07	40	0	0				0	0				
SETBP1	26040	mdanderson.org	37	18	42529989	42529989	+	Silent	SNP	C	C	T	rs149073567	bycluster;byfrequency;by1000genomes	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	SETBP1,NS,carcinoma,0,1	SETBP1	NM_015559	exon4	c.C684T	p.S228S	TGACAGCGGACCC		50	3	0.06	80	0	0	0	0	1	13	0	0.00			
SALL3	27164	mdanderson.org	37	18	76753274	76753274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_171999	exon2	c.T1283C	p.V428A	CCAAGGTCTTCGG		22	2	0.09	39	0	0				4	0	0.00			
ATP9B	374868	broad.mit.edu	37	18	77013493	77013493	+	Missense_Mutation	SNP	G	G	A	rs371121796		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	ATP9B	NM_198531	exon12	c.G1220A	p.R407H	GGTACCGCAATCT		181	4	0.02	172	0	0		96		13	0	0.00			
FAM108A1	81926	mdanderson.org	37	19	1877409	1877409	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_031213	exon6	c.C876A	p.S292S	GATCTTGGACACC		32	3	0.09	17	0	0				133	0	0.00			
TMED1	11018	mdanderson.org	37	19	10946841	10946841	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_006858	exon1	c.C27A	p.A9A	GGCCAGGGCTAGG		53	3	0.06	32	0	0				88	0	0.00			
PRKCSH	5589	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879	bycluster	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	PRKCSH,caecum,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA		81	6	0.07	67	0	0		0	1	55	0	0.00			
MAN2B1	4125	mdanderson.org	37	19	12774209	12774209	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_000528	exon6	c.G831A	p.P277P	CACCAGCGGCTGA		89	4	0.04	80	0	0				227	0	0.00			
ZNF676	163223	ucsc.edu	37	19	22363172	22363172	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	ZNF676	NM_001001411	exon3	c.C1347T	p.Y449Y	ACATTTGTAGGGT		85	6	0.07	64	2	0.03125		146		24	5	0.21			
RHPN2	85415	mdanderson.org	37	19	33517427	33517427	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_033103	exon3	c.C297T	p.G99G	ATAGACGCCCACC		24	4	0.17	35	0	0				22	0	0.00			
HRC	3270	hgsc.bcm.edu	37	19	49657886	49657886	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_002152	exon1	c.G609A	p.E203E	GGCCTCCTCTTCC		90	9	0.10	61	0	0				5	2	0.40			
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT		94	8	0.09	68	0	0				5	0	0.00			
ZNF525	170958	broad.mit.edu	37	19	53879043	53879043	+	Silent	SNP	T	T	C	rs62115350		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	ZNF525	.	.	.	.	CAGGGATGTGGCC		60	6	0.10	53	1	0.0188679245		35		5	0	0.00			
ANKRD36BP2	0	broad.mit.edu	37	2	89100923	89100924	+	RNA	INS	-	-	G	rs369765448	bycluster	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	TAAAAAAGATACA		9	4	0.44	4	0	0				0	0				
WASH2P	0	broad.mit.edu	37	2	114353290	114353290	+	RNA	SNP	T	T	C	rs11267060		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	CTTTCCTGTGTGC		90	11	0.12	52	1	0.0192307692				66	14	0.21			
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189868987	189868987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_000090	exon40	c.C2828T	p.A943V	AGGGAGCTCCAGG		274	98	0.36	289	0	0				12397	6202	0.50			
ANKZF1	55139	bcgsc.ca;mdanderson.org	37	2	220101121	220101121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	ANKZF1	NM_001042410	exon14	c.G2135A	p.R712H	CCACACGTTGCCT		80	5	0.06	113	0	0		45		79	0	0.00			
FRG1B	284802	bcgsc.ca	37	20	29623215	29623215	+	Missense_Mutation	SNP	G	G	A	rs77485836	bycluster	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	FRG1B	.	.	.	.	GCACTCGACAATG		387	37	0.10	416	21	0.0504807692		181		226	49	0.22			
BAGE	85319	broad.mit.edu	37	21	11058613	11058614	+	RNA	INS	-	-	A	rs377480117	bycluster	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	TTTTTTTAAAGCA		7	3	0.43	11	0	0				0	0				
KRTAP10-10	353333	mdanderson.org	37	21	46058034	46058034	+	Missense_Mutation	SNP	G	G	A	rs1785472	by2hit2allele	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_181688	exon1	c.G700A	p.V234M	CGCCCCGTGTGCT		88	4	0.05	67	1	0.0149253731				0	0				
TRMU	55687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46749663	46749663	+	Splice_Site	SNP	G	G	C	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_018006	exon8	c.773-1G>C	.	TCTGTAGGTTGGT		319	91	0.29	228	0	0				7	2	0.29			
SH3BP5	9467	mdanderson.org	37	3	15373825	15373825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_004844	exon1	c.A91G	p.M31V	GCTCCATCCCCTC		25	3	0.12	21	1	0.0476190476				20	0	0.00			
CLASP2	23122	mdanderson.org	37	3	33759452	33759452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_015097	exon1	c.C43A	p.Q15K	CCTTCTGCTGCAC		14	3	0.21	16	0	0				4	0	0.00			
EPM2AIP1	9852	mdanderson.org	37	3	37034360	37034360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	EPM2AIP1,NS,carcinoma,+1,1	EPM2AIP1	NM_014805	exon1	c.C209A	p.A70E	CCGTCCGCCACAT		36	3	0.08	41	0	0		1	1	14	0	0.00			
XYLB	9942	mdanderson.org	37	3	38404464	38404464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_005108	exon4	c.G247T	p.G83C	GCTTCGGGCTTCG		42	3	0.07	59	0	0				6	0	0.00			
WDR6	11180	broad.mit.edu	37	3	49050774	49050774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	WDR6	NM_018031	exon2	c.C1897T	p.P633S	CTCCAGCCAGTCC		70	3	0.04	79	0	0		79		170	0	0.00			
FNDC3B	64778	hgsc.bcm.edu;broad.mit.edu	37	3	172065071	172065071	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001135095	exon21	c.G2434T	p.E812X	TCCTTAGAACTCA		90	5	0.06	87	0	0				32	0	0.00			
MUC4	4585	bcgsc.ca	37	3	195509585	195509585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	MUC4	NM_018406	exon2	c.G8866A	p.G2956S	CGTGACCTGTGGA		47	15	0.32	56	3	0.0535714286		1505		0	0				
MUC4	4585	bcgsc.ca	37	3	195510046	195510046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	MUC4	NM_018406	exon2	c.C8405T	p.P2802L	GTGACAGGAAGAG		23	7	0.30	82	1	0.012195122		1505		0	0				
GABRB1	2560	mdanderson.org	37	4	47163290	47163290	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_000812	exon4	c.C265T	p.Q89X	TATTTCCAGCAGT		37	3	0.08	44	1	0.0227272727				0	0				
.	0	broad.mit.edu	37	4	68311853	68311855	+	RNA	DEL	GAG	GAG	-	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	GAG	GAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	TATGGCGAGGAGG		6	2	0.33	8	0	0				3	0	0.00			
SLCO4C1	353189	broad.mit.edu	37	5	101599428	101599428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	SLCO4C1	NM_180991	exon4	c.C859A	p.Q287K	GCAGTTGTCCTCC		265	6	0.02	370	0	0		113		4	0	0.00			
SLC12A2	6558	mdanderson.org	37	5	127485691	127485691	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001046	exon13	c.G2008T	p.E670X	GCAGCTGAACTGA		52	4	0.08	44	1	0.0227272727				23	0	0.00			
FARS2	10667	broad.mit.edu	37	6	5404837	5404837	+	Silent	SNP	G	G	T	rs370034437	alternate_allele	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	FARS2,colon,carcinoma,+1,2	FARS2	NM_006567	exon3	c.G675T	p.A225A	CTCTGCGCATAAA		222	4	0.02	173	0	0		33	2	52	0	0.00			
TAAR2	9287	hgsc.bcm.edu;bcgsc.ca	37	6	132945356	132945356	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	TAAR2	NM_001033080	exon1	c.60delG	p.K20fs	CCTACCTTTTTTG		110	34	0.31	119	0	0		45		0	0				
CCT6P1	0	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	TCTTGCGCAGAAT		151	5	0.03	115	0	0				18	0	0.00			
CLIP2	7461	broad.mit.edu	37	7	73790841	73790842	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	CLIP2	NM_003388	exon10	c.2110_2111insG	p.R704fs	CACTGGCGGGCCC		96	6	0.06	101	0	0		134		41	0	0.00			
PRRT4	401399	ucsc.edu	37	7	127991185	127991185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	PRRT4	NM_001174164	exon6	c.C2425A	p.L809I	GCGAGAGTCCGCA		39	4	0.10	32	0	0		31		17	0	0.00			
MGAM	8972	broad.mit.edu;mdanderson.org	37	7	141765179	141765179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	MGAM	NM_004668	exon38	c.G4529A	p.R1510H	TCACCCGCTCCAC		135	5	0.04	113	0	0		767		2	0	0.00			
NOBOX	135935	mdanderson.org	37	7	144098624	144098624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	NOBOX,NS,carcinoma,0,2	NOBOX	NM_001080413	exon4	c.C359A	p.A120D	TGAGGGGCTGAGC		43	3	0.07	33	0	0		0	2	0	0				
DPP6	1804	mdanderson.org	37	7	154598822	154598822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_130797	exon16	c.G1666T	p.G556C	TGCGAAGGTCAGC		47	3	0.06	47	0	0				8	0	0.00			
PAXIP1	22976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154738434	154738434	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_007349	exon18	c.C3012T	p.S1004S	CTGCTTGGATAAC		153	35	0.23	168	0	0				109	33	0.30			
SCARA5	286133	mdanderson.org	37	8	27779326	27779326	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	SCARA5,NS,carcinoma,-2,1	SCARA5	NM_173833	exon4	c.G678A	p.V226V	GCGCAGCACGCCG		36	3	0.08	23	0	0		-2	1	38	0	0.00			
KANK1	23189	broad.mit.edu	37	9	732477	732477	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	KANK1_ENST00000382303,NS,carcinoma,0,4	KANK1	NM_001256876	exon10	c.G3105A	p.E1035E	AGAAGAGGAGGAG		136	5	0.04	115	1	0.0086956522		231	4	53	0	0.00			
SPTAN1	6709	broad.mit.edu	37	9	131343226	131343226	+	Missense_Mutation	SNP	C	C	T	rs374524469		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	SPTAN1	NM_003127	exon11	c.C1349T	p.A450V	AGAGAGCGGCGCT		102	4	0.04	100	0	0		266		128	0	0.00			
.	0	broad.mit.edu	37	X	155255248	155255248	+	RNA	SNP	C	C	T	rs71259952		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	GGGGGACGGCTCC		14	5	0.36	9	0	0				17	0	0.00			
MAPK8IP2	23542	mdanderson.org	37	22	51044145	51044145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	CCGGCCCTGCCAA		45	3	0.07	40	0	0				10	0	0.00			
