Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
GLTPD1	80772	mdanderson.org	37	1	1262874	1262874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001029885	exon3	c.C376T	p.R126C	GGCCTGCGTACCA		23	3	0.13	21	0	0				22	0	0.00			
KIAA1751	85452	mdanderson.org	37	1	1920330	1920330	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001080484	exon3	c.C150T	p.S50S	TTACCTGCTGTGT		19	2	0.11	23	0	0				0	0				
KIF1B	23095	broad.mit.edu	37	1	10397530	10397530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	KIF1B	NM_015074	exon29	c.G3223T	p.V1075L	TTCCGAGTAACAG		197	4	0.02	167	0	0		242		71	0	0.00			
MFN2	9927	broad.mit.edu	37	1	12069691	12069691	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	MFN2	NM_014874	exon18	c.C2112T	p.D704D	AGTTGACGTCACC		164	4	0.02	144	1	0.0069444444		83		155	0	0.00			
NASP	4678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46073158	46073158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_002482	exon6	c.C575T	p.A192V	AATCTGCAGAGGA		196	47	0.24	179	0	0				531	151	0.28			
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75038768	75038768	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	C1orf173,NS,malignant_melanoma,0,1	C1orf173	NM_001002912	exon14	c.C2626G	p.P876A	TTTCAGGAGCCTC		103	21	0.20	109	0	0		0	1	0	0				
ZNF644	84146	broad.mit.edu	37	1	91403170	91403170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	ZNF644	NM_201269	exon4	c.C3560A	p.A1187D	GAAATAGCAGAAT		192	4	0.02	172	0	0		120		81	0	0.00			
VCAM1	7412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	101186170	101186170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001078	exon2	c.A203T	p.N68I	CACTGAATGGGAA		196	50	0.26	189	0	0				12	0	0.00			
GPSM2	29899	ucsc.edu	37	1	109461327	109461327	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	GPSM2	NM_013296	exon12	c.G1356A	p.G452G	GAAGGGGAAAAAA		260	2	0.01	221	0	0		56		52	9	0.17	rescued with RNA-seq		
RPTN	126638	broad.mit.edu	37	1	152127961	152127961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	RPTN,NS,carcinoma,-1,2	RPTN	NM_001122965	exon3	c.G1614A	p.M538I	TCTGTCCATCTGA		226	6	0.03	178	2	0.0112359551		123	2	0	0				
LOR	4014	broad.mit.edu	37	1	153233515	153233515	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	LOR	NM_000427	exon2	c.C90T	p.G30G	CAGCGGCGGTGGT		81	3	0.04	74	0	0		19		0	0				
NCOA4	8031	broad.mit.edu	37	10	51585536	51585536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	NCOA4	NM_001145261	exon9	c.G1683T	p.K561N	AAAGAAGATGGGC		62	5	0.08	65	0	0		58		265	0	0.00			
LRRTM3	347731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	68686864	68686864	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_178011	exon2	c.T190A	p.L64I	GGTTGCTTAGGTT		69	11	0.16	95	0	0				0	0				
AP2A2	161	mdanderson.org	37	11	993799	993799	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001242837	exon13	c.C1599T	p.C533C	CCTGTGCAGCGTC		31	3	0.10	27	0	0				133	0	0.00			
C11orf42	160298	broad.mit.edu	37	11	6231188	6231188	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	C11orf42	NM_173525	exon2	c.A181C	p.T61P	GCCCATACCCGCC		71	16	0.23	93	25	0.2688172043		35		1	0	0.00			
RAB3IL1	5866	mdanderson.org	37	11	61669973	61669973	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	RAB3IL1,NS,carcinoma,+1,2	RAB3IL1	NM_013401	exon8	c.C940A	p.R314R	GGATTCGGTGGCG		57	3	0.05	65	0	0		1	2	24	0	0.00			
BSCL2	26580	mdanderson.org	37	11	62458260	62458260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001130702	exon8	c.A818G	p.Q273R	CATACCTGTCCCT		53	4	0.08	74	0	0				244	0	0.00			
CDC42EP2	10435	broad.mit.edu;mdanderson.org	37	11	65088569	65088569	+	Missense_Mutation	SNP	G	G	T	rs377014949	alternate_allele	TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	CDC42EP2	NM_006779	exon2	c.G200T	p.G67V	TGCCGGGGACCAT		149	6	0.04	147	0	0		13		2	0	0.00			
IGSF9B	22997	mdanderson.org	37	11	133805639	133805639	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_014987	exon7	c.G840C	p.V280V	GATGCGCACCCTC		38	3	0.08	56	0	0				2	0	0.00			
CACNA1C	775	broad.mit.edu	37	12	2800309	2800309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	CACNA1C	NM_199460	exon50	c.G6610T	p.G2204C	GCGCGGGGTCGAC		209	4	0.02	128	0	0		1023		54	0	0.00			
SYCP3	50511	mdanderson.org	37	12	102127445	102127445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_153694	exon6	c.C361A	p.L121I	GGTTAAGCTTCTG		44	3	0.07	45	0	0				259	0	0.00			
PXMP2	5827	mdanderson.org	37	12	133277883	133277883	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_018663	exon4	c.G447A	p.W149X	CTTCTGGCCGGCG		45	3	0.07	35	0	0				86	2	0.02			
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	26436476	26436476	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_016529	exon33	c.G3113A	p.W1038X	TGACCTGGCTGGT		110	42	0.38	115	0	0				1	0	0.00			
KBTBD6	89890	mdanderson.org	37	13	41705572	41705572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_152903	exon1	c.G1076A	p.C359Y	GGATCACAGCAGA		208	15	0.07	181	2	0.0110497238				48	0	0.00			
EMC9	51016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24608338	24608338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_016049	exon6	c.C508A	p.Q170K	GGTGCTGGTGGGC		268	47	0.18	196	0	0				56	7	0.13			
DDHD1	0	broad.mit.edu	37	14	53513556	53513556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	DDHD1	NM_001160148	exon13	c.T2633C	p.L878P	AGAAAAAGGGCAA		443	4	0.01	390	2	0.0051282051		202		86	0	0.00			
CDKN3	1033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	54884583	54884583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_005192	exon7	c.C466A	p.L156I	CTCCTACTATACC		186	11	0.06	150	0	0				94	13	0.14			
YLPM1	56252	broad.mit.edu	37	14	75230979	75230979	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	YLPM1	NM_019589	exon1	c.G787T	p.E263X	CAGCAAGAGCCTT		125	5	0.04	93	0	0		298		84	1	0.01			
BAHD1	22893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	40751683	40751684	+	Nonsense_Mutation	DNP	GG	GG	TT	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	GG	GG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_014952	exon2	c.G1021T	p.QE340H*	TAAGCAGGAACTG		154	33	0.21	96	0	0				117	0	0.00			
VPS13C	54832	broad.mit.edu	37	15	62254066	62254066	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	VPS13C	NM_020821	exon35	c.C3630A	p.A1210A	CTCTTTGGCTGTC		102	4	0.04	86	0	0		506		6	0	0.00			
MAN2C1	4123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75656927	75656927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001256494	exon5	c.G502A	p.E168K	TCTTCTCAGGGTC		96	16	0.17	86	0	0				64	10	0.16			
SLCO3A1	28232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	92671632	92671632	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_013272	exon7	c.T1425C	p.C475C	TAACTGTGAATGC		148	6	0.04	111	0	0				16	2	0.13			
DDX11L9	0	broad.mit.edu	37	15	102516768	102516770	+	RNA	DEL	CAA	CAA	-	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	CAA	CAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	.	.	.	.	AGAAACCAACAGT		8	2	0.25	9	0	0				14	0	0.00			
HMOX2	3163	broad.mit.edu;mdanderson.org	37	16	4559436	4559436	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	HMOX2	NM_001127205	exon5	c.C720T	p.A240A	CCAGGCCGGCTCC		73	4	0.05	78	0	0		22		205	0	0.00			
EEF2K	29904	broad.mit.edu	37	16	22291564	22291564	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	EEF2K	NM_013302	exon17	c.G1935T	p.L645L	TGCCCTGGAGATG		87	3	0.03	109	0	0		142		22	0	0.00			
EARS2	124454	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23540942	23540942	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	EARS2	NM_001083614	exon7	c.C1233T	p.C411C	CAGGCGGCAAATG		89	24	0.27	126	1	0.0079365079		26		68	24	0.35			
ZNF629	23361	mdanderson.org	37	16	30794137	30794137	+	Missense_Mutation	SNP	G	G	T	rs189318984	by1000genomes;alternate_allele	TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001080417	exon3	c.C1512A	p.H504Q	GCGGACGTGGGTA		36	3	0.08	61	1	0.0163934426				0	0				
.	0	broad.mit.edu	37	16	32077601	32077601	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	.	.	.	.	CTCCAGGGACAAC		242	6	0.02	287	1	0.0034843206				8	8	1.00	rescued with RNA-seq		
MIR548AE2	100616339	hgsc.bcm.edu	37	16	48295639	48295639	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	.	.	.	.	ATATAACTCTTGC		37	16	0.43	39	0	0				0	0				
KRTAP4-11	653240	mdanderson.org	37	17	39274238	39274238	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_033059	exon1	c.T330C	p.C110C	GGGGCGACAGCAG		24	3	0.13	25	0	0				0	0				
PYY	5697	mdanderson.org	37	17	42030492	42030492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_004160	exon6	c.G254A	p.R85H	ACGGGGCGGTCCT		121	6	0.05	138	0	0				356	0	0.00			
.	0	bcgsc.ca	37	18	13152605	13152605	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	.	.	.	.	TCTATGCCAAGAA		36	4	0.11	38	0	0				0	0				
CCDC178	374864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	30913247	30913247	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001105528	exon9	c.C770G	p.A257G	ATCTTTGCATTTG		131	38	0.29	167	0	0				0	0				
SALL3	27164	bcgsc.ca	37	18	76754583	76754583	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	SALL3,NS,carcinoma,0,1	SALL3	NM_171999	exon2	c.C2592T	p.S864S	CAAGTCCGTGGAG		46	4	0.09	67	0	0		162	1	0	0				
ARHGEF1	0	broad.mit.edu	37	19	42410875	42410875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	ARHGEF1	NM_199002	exon28	c.C2721T	p.C907C	ATTTTGCCGCCTG		255	6	0.02	155	1	0.0064516129		95		130	0	0.00			
ZNF836	162962	mdanderson.org	37	19	52671321	52671321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001102657	exon3	c.C5A	p.A2D	GTAAGAGCCATCC		55	3	0.05	46	0	0				14	0	0.00			
RAB10	10890	broad.mit.edu	37	2	26257554	26257554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	RAB10	NM_016131	exon1	c.T77C	p.L26P	GCGTCCTTTTTCG		254	3	0.01	214	0	0		14		327	0	0.00			
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	167055703	167055703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_002977	exon27	c.G5413A	p.A1805T	GTTTTGCTATGAG		225	9	0.04	230	0	0				3	0	0.00			
VPS16	64601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	2843984	2843984	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_022575	exon15	c.C1416G	p.Y472X	CGAGTACTTGCGC		98	23	0.23	67	0	0				120	9	0.08			
KIAA0930	23313	bcgsc.ca	37	22	45607914	45607914	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	KIAA0930	NM_015264	exon2	c.C154A	p.R52R	CCTGCCGGGGAGC		53	4	0.08	60	1	0.0166666667		43		53	0	0.00			
PANX2	56666	broad.mit.edu	37	22	50617594	50617594	+	Missense_Mutation	SNP	G	G	C	rs376326556	alternate_allele	TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	PANX2	NM_052839	exon3	c.G1922C	p.G641A	ACGGGGGCCCCCG		87	20	0.23	115	6	0.052173913		69		7	2	0.29			
CCRL1	51554	mdanderson.org	37	3	132321047	132321047	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	.	.	.	.	AAAAAACAAACTA		246	14	0.06	337	7	0.0207715134				1	0	0.00			
SHOX2	6474	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	157823772	157823772	+	Missense_Mutation	SNP	C	C	G	rs376757024		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_003030	exon1	c.G42C	p.Q14H	CACTTTCTGGTCA		273	14	0.05	354	0	0				0	0				
IQCJ	654502	broad.mit.edu	37	3	158983108	158983108	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	IQCJ	NM_001042705	exon5	c.T396C	p.L132L	CTACCTTGACCAG		142	5	0.04	143	1	0.006993007		28		0	0				
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55602664	55602664	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	KIT,caecum,carcinoma,0,3	KIT	NM_000222	exon18	c.G2485C	p.A829P	TTACAGGCTCGAC		77	23	0.30	90	0	0		0	3	603	242	0.40			
LRBA	987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	151837605	151837605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_006726	exon7	c.C842T	p.S281L	CCTTTTGACTTTA		194	12	0.06	232	0	0				14	1	0.07			
SNX25	83891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186231964	186231964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	SNX25	NM_031953	exon7	c.C846A	p.S282R	TCAAAGCCAGAAG		169	41	0.24	208	1	0.0048076923		100		21	2	0.10			
UBE2QL1	134111	mdanderson.org	37	5	6449044	6449044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001145161	exon1	c.G38A	p.R13H	GCGACCGCTTCAT		53	3	0.06	50	0	0				2	0	0.00			
MAP1B	4131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71489724	71489724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	MAP1B	NM_005909	exon5	c.C542G	p.A181G	ATCCTGCCAACAA		73	17	0.23	82	0	0		243		12	4	0.33			
DHFR	1719	hgsc.bcm.edu;broad.mit.edu	37	5	79950296	79950296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_000791	exon1	c.C13A	p.L5I	AGTTTAGCGAACC		128	6	0.05	160	0	0				1	0	0.00			
SLC23A1	9963	mdanderson.org	37	5	138714360	138714360	+	Missense_Mutation	SNP	C	C	T	rs115023155	by1000genomes	TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_152685	exon10	c.G1099A	p.E367K	TGCCTTCGGTGAA		103	5	0.05	132	0	0	0.006			1	0	0.00			
ADAM19	8728	broad.mit.edu	37	5	156936422	156936422	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	ADAM19	NM_033274	exon9	c.C792A	p.T264T	CCCGTGGGTCCAC		158	4	0.03	162	0	0		216		4	0	0.00			
MSX2	4488	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	174156363	174156363	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	MSX2	NM_002449	exon2	c.G581C	p.R194T	ACCGAAGGGCCAA		174	24	0.14	191	0	0		24		87	23	0.26			
POU5F1	5460	broad.mit.edu	37	6	31138067	31138067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	POU5F1	NM_002701	exon1	c.T331C	p.S111P	CCGGGGAGGCCCC		118	3	0.03	95	3	0.0315789474		25		5002	4	0.00			
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	40360629	40360629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_020737	exon3	c.G1423T	p.A475S	CGAAGGCCTTGTT		61	16	0.26	69	0	0				0	0				
ZNF451	26036	broad.mit.edu	37	6	57013354	57013354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	ZNF451	NM_001031623	exon10	c.G2471T	p.G824V	ATTTTGGATCTGA		241	5	0.02	227	1	0.0044052863		181		64	0	0.00			
KLHL32	114792	hgsc.bcm.edu	37	6	97424037	97424037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_052904	exon3	c.G188T	p.C63F	CAGCATGCAGTGA		77	4	0.05	89	0	0				0	0				
PBOV1	59351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138539259	138539259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_021635	exon1	c.G274T	p.G92C	AGGAACCTTTCAT		189	36	0.19	153	0	0				0	0				
INHBA-AS1	285954	hgsc.bcm.edu	37	7	41797988	41797988	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	.	.	.	.	TTTTCCATTCATT		13	5	0.38	9	0	0				0	0				
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	77755017	77755017	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_012301	exon20	c.G3561C	p.R1187S	CCTCATCCTCCCA		272	24	0.09	176	0	0				0	0				
KPNA7	402569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98792933	98792933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001145715	exon4	c.C313T	p.P105S	TCAGAGGGGGGTT		110	13	0.12	83	0	0				0	0				
KLRG2	346689	mdanderson.org	37	7	139168165	139168165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_198508	exon1	c.C224A	p.P75H	GACCCGGGGCGAG		22	2	0.09	14	0	0				88	0	0.00			
RP1L1	94137	broad.mit.edu	37	8	10465179	10465179	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	RP1L1	NM_178857	exon4	c.T6429A	p.P2143P	TGACTCAGGCTGG		178	8	0.04	148	1	0.0067567568		453		0	0				
KIAA1456	57604	broad.mit.edu	37	8	12879537	12879537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	KIAA1456	NM_020844	exon5	c.A1349G	p.K450R	AGAAAAAGAGAGG		181	5	0.03	155	1	0.0064516129		20		3	0	0.00			
PHYHIP	9796	broad.mit.edu	37	8	22079280	22079280	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	PHYHIP	NM_014759	exon5	c.C579A	p.G193G	GGGCTGGCCCGTG		147	6	0.04	106	1	0.0094339623		24		3	0	0.00			
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144810755	144810755	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_198488	exon5	c.C876A	p.A292A	CATGCGGGCCAGG		56	5	0.09	48	0	0				1	0	0.00			
EXOSC4	54512	mdanderson.org	37	8	145135472	145135472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_019037	exon3	c.G706T	p.V236L	CAGCATGTGCGTG		12	2	0.17	12	0	0				50	0	0.00			
MPDZ	8777	broad.mit.edu	37	9	13217201	13217201	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	MPDZ	NM_003829	exon9	c.C1179A	p.G393G	AATGTAGCCAGCA		247	6	0.02	212	1	0.0047169811		324		28	0	0.00			
C9orf96	169436	mdanderson.org	37	9	136270539	136270539	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	C9orf96_ENST00000371957,NS,carcinoma,+1,1	C9orf96_ENST00000371957	NM_153710	exon18	c.G2037T	p.L679L	GGGACTGGAATAG		24	4	0.17	8	0	0		1	1	1	0	0.00			
PPEF1	5475	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	18845542	18845542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	PPEF1	NM_006240	exon19	c.G1899T	p.K633N	TTTAAAGGCTTTC		251	8	0.03	149	1	0.0067114094		89		5	0	0.00			
DDX3X	1654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	41205590	41205590	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001193416	exon13	c.G1424C	p.R475P	GAGACCGTTCTCA		183	14	0.08	144	0	0				754	57	0.08			
TSPYL2	64061	mdanderson.org	37	X	53111842	53111842	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_022117	exon1	c.G162T	p.A54A	GGAGGCGGCACAG		28	3	0.11	17	0	0				7	0	0.00			
NLGN3	54413	broad.mit.edu	37	X	70387352	70387352	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	NLGN3	NM_181303	exon7	c.A1405C	p.T469P	CCTGAGACCCGCC		94	29	0.31	52	14	0.2692307692		159		1	0	0.00			
MORC4	79710	broad.mit.edu	37	X	106184800	106184800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	MORC4	NM_024657	exon17	c.C2723A	p.P908H	AAGTGAGGGAGGA		259	6	0.02	198	0	0		155		102	0	0.00			
TENM1	10178	broad.mit.edu;mdanderson.org	37	X	123556153	123556153	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001163278	exon24	c.C4440T	p.C1480C	AATTTTGCAGTCA		102	10	0.10	73	0	0				3	0	0.00			
UBE2NL	389898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	142967560	142967560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	UBE2NL	NM_001012989	exon1	c.G358T	p.D120Y	CCAGATGATCCAT		177	79	0.45	153	1	0.0065359477		46		0	0				
F8	2157	broad.mit.edu	37	X	154157224	154157224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	F8	NM_000132	exon14	c.A4841G	p.K1614R	GTATCCTTTTTCT		164	4	0.02	106	0	0		646		0	0				
IL9R	3581	broad.mit.edu	37	X	155234957	155234957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	IL9R	NM_176786	exon7	c.G699T	p.R233S	GCACAGGGATCAC		186	5	0.03	246	0	0		73		0	0				
