Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
OPRD1	4985	mdanderson.org	37	1	29189700	29189700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_000911	exon3	c.C1024T	p.P342S	CCAGACCCCAGCA		23	2	0.09	33	0	0				0	0				
MIR137HG	400765	hgsc.bcm.edu	37	1	98511786	98511786	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	TGCCGCCGCCGCC		71	15	0.21	90	0	0				0	0				
MIR137HG	400765	hgsc.bcm.edu	37	1	98511792	98511792	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	CGCCGCCGCCACC		56	6	0.11	74	0	0				0	0				
SRGAP2D	0	broad.mit.edu	37	1	121116750	121116750	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001271887	exon3	c.G307T	p.A103S	TTGCTGGCTTTGG		208	9	0.04	186	1	0.0053763441				61	0	0.00			
CELF3	11189	ucsc.edu;bcgsc.ca	37	1	151678746	151678746	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	CELF3	NM_007185	exon10	c.G1080A	p.Q360Q	CTGCTGCTGTTGA		40	4	0.10	29	0	0		49		0	0				
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152280480	152280480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_002016	exon3	c.C6882A	p.H2294Q	TGCAGAGTGCCCA		336	82	0.24	242	0	0				0	0				
OR6K6	128371	broad.mit.edu	37	1	158725536	158725536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	OR6K6	NM_001005184	exon1	c.T931C	p.F311L	GCTCCCTTTTTCA		208	6	0.03	212	0	0		81		0	0				
PFKFB3	5209	bcgsc.ca	37	10	6271098	6271098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	PFKFB3	.	.	.	.	GGAATGCAGCCTG		136	6	0.04	142	0	0		82		0	0				
MRC1	4360	broad.mit.edu	37	10	18138582	18138582	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	MRC1	NM_002438	exon7	c.G1138T	p.E380X	AGAGATGAGAAAA		504	4	0.01	409	0	0		13		3	0	0.00			
ENTPD7	57089	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	101451184	101451184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ENTPD7	NM_020354	exon8	c.G752T	p.R251I	GACGGAGAAGGAC		103	5	0.05	99	1	0.0101010101		44		8	0	0.00			
AP2A2	161	mdanderson.org	37	11	1000510	1000510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001242837	exon15	c.G2038T	p.G680C	TCCTCCGGCGGCA		27	2	0.07	33	0	0				23	0	0.00			
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1269803	1269803	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_002458	exon31	c.C11693G	p.T3898R	CACCCACAACCAG		249	57	0.23	256	0	0				0	0				
TNKS1BP1	85456	mdanderson.org	37	11	57076874	57076874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_033396	exon6	c.C3311A	p.P1104Q	TGCCCTGGGCTAA		49	3	0.06	71	0	0				80	0	0.00			
OR5B17	219965	mdanderson.org	37	11	58126036	58126036	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	OR5B17,NS,malignant_melanoma,-1,1	OR5B17	NM_001005489	exon1	c.C507A	p.S169S	CACATTGGACATG		57	3	0.05	64	0	0		-1	1	0	0				
PPFIA1	8500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70224251	70224251	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_177423	exon26	c.C3500G	p.T1167S	GGGTGACTTCTTC		66	28	0.42	103	0	0				20	1	0.05			
MYO7A	4647	mdanderson.org	37	11	76919803	76919803	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_000260	exon44	c.G6006T	p.V2002V	CACGGTGCCAGGG		39	3	0.08	58	0	0				8	0	0.00			
RSF1	51773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77451960	77451960	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_016578	exon4	c.G394C	p.D132H	TGTCATCAAACTG		88	29	0.33	151	0	0				13	9	0.69			
ERC1	23085	broad.mit.edu	37	12	1292505	1292505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ERC1	NM_178040	exon11	c.A2075G	p.K692R	TGAAAAAGGACTC		956	5	0.01	512	1	0.001953125		95		127	0	0.00			
NRIP2	83714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	2943815	2943815	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_031474	exon1	c.A335T	p.K112M	AAGTCCTTGGAGG		150	12	0.08	64	0	0				2	0	0.00			
ATN1	1822	mdanderson.org	37	12	7045879	7045879	+	Missense_Mutation	SNP	C	C	A	rs141514883	bycluster	TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001007026	exon5	c.C1449A	p.H483Q	TCACCACCAGCAA		225	10	0.04	88	0	0	0			280	0	0.00			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	T	A	rs121913240	bycluster	TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182T	p.Q61L	TCCTCTTGACCTG		225	26	0.12	116	0	0		1	429	104	6	0.06			
FAM186A	121006	broad.mit.edu	37	12	50747102	50747102	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	FAM186A_ENST00000327337,NS,carcinoma,0,3	FAM186A	NM_001145475	exon4	c.T3513C	p.L1171L	AGGGGTAAGAGGG		164	7	0.04	114	2	0.0175438596		181	3	1	0	0.00			
KRT75	9119	broad.mit.edu	37	12	52827741	52827741	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	KRT75	NM_004693	exon1	c.T348C	p.C116C	AGGGGGACACACG		283	5	0.02	232	0	0		75		0	0				
DCTN2	10540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57926527	57926527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001261412	exon10	c.G847A	p.A283T	GCCGAGCCTCCAC		219	42	0.19	169	0	0				553	127	0.23			
TSPAN19	144448	broad.mit.edu	37	12	85408282	85408282	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	TSPAN19	NM_001100917	exon9	c.T731A	p.I244N	GCATGGATTATAT		454	8	0.02	463	0	0		23		0	0				
RAN	5901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	131357394	131357394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_006325	exon3	c.G50A	p.G17D	TGGTTGGTGATGG		244	43	0.18	155	0	0				2292	502	0.22			
MYO16	23026	mdanderson.org	37	13	109772789	109772789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	MYO16,NS,carcinoma,0,1	MYO16	NM_001198950	exon29	c.G3510T	p.Q1170H	GTTGCAGAGAAAA		45	3	0.07	66	0	0		0	1	8	0	0.00			
SYNDIG1L	646658	broad.mit.edu	37	14	74876236	74876236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	SYNDIG1L	NM_001105579	exon2	c.G212T	p.S71I	AGGCAGCTGGGCC		106	5	0.05	79	0	0		24		0	0				
POMT2	29954	mdanderson.org	37	14	77769282	77769282	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_013382	exon5	c.G552T	p.T184T	GCATCCCGTGTCT		51	3	0.06	52	0	0				28	0	0.00			
AKAP13	11214	broad.mit.edu	37	15	86064728	86064728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	AKAP13_ENST00000394518,NS,carcinoma,-2,2	AKAP13	NM_007200	exon3	c.G103T	p.V35L	TACTTGGTATTTT		391	4	0.01	289	0	0		394	2	5	0	0.00			
ANPEP	290	broad.mit.edu	37	15	90328669	90328669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ANPEP	NM_001150	exon21	c.C2815A	p.Q939K	GGGCTTGCTCCAG		206	6	0.03	162	0	0		124		82	0	0.00			
IFT140	9742	mdanderson.org	37	16	1561124	1561124	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_014714	exon31	c.C4210A	p.R1404R	GCCGCCGCCGCAT		60	3	0.05	52	0	0				9	0	0.00			
TSC2	7249	mdanderson.org	37	16	2124247	2124247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001114382	exon22	c.C2402T	p.A801V	GCTGTGCCAGCCA		47	3	0.06	67	0	0				54	0	0.00			
ACSM2B	348158	broad.mit.edu	37	16	20570613	20570613	+	Missense_Mutation	SNP	T	T	C	rs374648082		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	ACSM2B,NS,carcinoma,0,1	ACSM2B	NM_182617	exon4	c.A334G	p.M112V	GCAGCATCACTGC		208	7	0.03	209	1	0.004784689		121	1	0	0				
KIAA0895L	653319	mdanderson.org	37	16	67212358	67212358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001040715	exon5	c.C897A	p.N299K	CTCCGCGTTGTGC		11	2	0.18	20	0	0				5	0	0.00			
SMG6	23293	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2200556	2200556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_017575	exon4	c.G2132A	p.S711N	GGCTTGCTGCGAA		110	20	0.18	119	0	0				51	18	0.35			
PITPNM3	83394	mdanderson.org	37	17	6371655	6371655	+	Missense_Mutation	SNP	G	G	T	rs150769456	bycluster;alternate_allele	TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	PITPNM3,NS,carcinoma,+1,1	PITPNM3	NM_031220	exon14	c.C1780A	p.R594S	CATAGCGCATTAC		54	3	0.06	61	0	0		1	1	4	0	0.00			
LOC146880	0	broad.mit.edu	37	17	62757842	62757843	+	RNA	INS	-	-	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	CCGTCTCAAAAAA		10	5	0.50	11	0	0				0	0				
PTPN2	5771	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	12830954	12830954	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	PTPN2	NM_001207013	exon4	c.G348A	p.V116V	TTTCTCCACAATG		144	6	0.04	176	0	0		37		187	0	0.00			
SETBP1	26040	broad.mit.edu	37	18	42531523	42531523	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	SETBP1	NM_015559	exon4	c.G2218T	p.E740X	CCATCCGAAGAAC		121	4	0.03	133	1	0.007518797		577		6	0	0.00			
UHRF1	29128	broad.mit.edu	37	19	4960773	4960773	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	UHRF1	.	.	.	.	CAGACCGTCCTCA		574	6	0.01	395	0	0		56		4	0	0.00			
RFX1	5989	broad.mit.edu	37	19	14104595	14104595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	RFX1	NM_002918	exon2	c.G61C	p.A21P	GCGGGGCCTGTGG		97	28	0.29	62	16	0.2580645161		63		3	0	0.00			
U2AF1L4	199746	mdanderson.org	37	19	36233572	36233572	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_144987	exon6	c.G536A	p.W179X	TCCTGCCAGGAAC		53	4	0.08	41	0	0				52	0	0.00			
ZNF526	116115	mdanderson.org	37	19	42730029	42730029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_133444	exon3	c.C1474T	p.R492W	CACCTGCGGACAC		89	4	0.04	82	0	0				74	1	0.01			
SPHK2	56848	mdanderson.org	37	19	49129574	49129574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_020126	exon3	c.G466T	p.A156S	GCCACTGCCCTCA		13	2	0.15	9	0	0				14	0	0.00			
.	0	bcgsc.ca	37	2	6636107	6636107	+	RNA	SNP	G	G	T	rs112551650	bycluster;byfrequency	TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	TGCTTCGTTAAAC		38	5	0.13	49	0	0				0	0				
GPAT2	150763	broad.mit.edu	37	2	96687959	96687959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	GPAT2,trunk,malignant_melanoma,0,2	GPAT2	NM_207328	exon22	c.T2336A	p.L779Q	TTGTCCAGGCTGG		558	5	0.01	522	1	0.0019157088		46	2	4	0	0.00			
CRYGB	1419	broad.mit.edu	37	2	209007463	209007463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	CRYGB,trunk,malignant_melanoma,+1,1	CRYGB	NM_005210	exon3	c.A427G	p.R143G	ACTGCCTCCCCCT		276	4	0.01	260	1	0.0038461538		24	1	1	0	0.00			
NCOA6	23054	broad.mit.edu	37	20	33337630	33337630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	NCOA6	NM_014071	exon9	c.C2368A	p.P790T	CTGGTGGCCGCAG		114	6	0.05	104	1	0.0096153846		219		43	0	0.00			
.	0	bcgsc.ca	37	22	16389579	16389579	+	RNA	SNP	T	T	A	rs371360996		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	TGAGCGTGACCAC		22	7	0.32	38	1	0.0263157895				0	0				
MN1	4330	mdanderson.org	37	22	28194155	28194155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_002430	exon1	c.C2377A	p.P793T	GGCTGGGCTGGAA		26	3	0.12	27	0	0				1	0	0.00			
TTC38	55020	mdanderson.org	37	22	46685356	46685356	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_017931	exon12	c.C1140A	p.C380X	CCTGTGCCAGGCC		31	3	0.10	29	0	0				11	0	0.00			
CELSR1	9620	mdanderson.org	37	22	46931248	46931248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_014246	exon1	c.C1820T	p.T607M	GAGGCCGTGTCCA		35	3	0.09	41	0	0				8	0	0.00			
KLHDC7B	113730	mdanderson.org	37	22	50986623	50986623	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_138433	exon1	c.A28T	p.R10W	TTCCCCAGGCAAG		35	3	0.09	52	0	0				1	0	0.00			
BRPF1	7862	mdanderson.org	37	3	9783075	9783075	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_004634	exon5	c.G1806T	p.R602R	AGCTCGGCTGCTC		44	3	0.07	38	0	0				53	0	0.00			
TRH	7200	broad.mit.edu	37	3	129695840	129695840	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	TRH,right_upper_lobe,carcinoma,0,2	TRH	NM_007117	exon3	c.G510A	p.E170E	AGAAGAGGAGGAG		62	3	0.05	52	0	0		30	2	0	0				
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138374244	138374244	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	PIK3CB,NS,carcinoma,-1,4	PIK3CB	NM_006219	exon22	c.A3200T	p.D1067V	CTGTAGTCTTTCC		181	47	0.26	185	0	0		-1	4	95	26	0.27			
IGF2BP2	10644	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185407330	185407330	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	IGF2BP2	NM_001007225	exon6	c.T490A	p.S164T	GGGGCGAAGGGGA		196	54	0.28	201	1	0.0049751244		69		76	22	0.29			
FBXO45	200933	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196296078	196296078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	FBXO45	NM_001105573	exon1	c.A223G	p.N75D	GATGAGAACAGCG		74	25	0.34	64	1	0.015625		18		53	16	0.30			
WDR19	57728	mdanderson.org	37	4	39218846	39218846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_025132	exon13	c.G1342T	p.V448F	GGCAAAGTCCAGT		47	3	0.06	77	0	0				8	0	0.00			
BMP3	651	bcgsc.ca;mdanderson.org	37	4	81952602	81952602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	BMP3	NM_001201	exon1	c.A164G	p.K55R	AAGACAAGGTCTC		116	5	0.04	131	0	0		59		0	0				
ADH1C	126	broad.mit.edu	37	4	100261864	100261864	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	GGGAAGCCATCTG		75	3	0.04	143	0	0				0	0				
NDST4	64579	mdanderson.org	37	4	115751039	115751039	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_022569	exon13	c.C2406A	p.P802P	CTTTTGGGGATCA		57	3	0.05	93	0	0				0	0				
OTUD4	54726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146059616	146059616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001102653	exon21	c.C2116A	p.Q706K	CAGTCTGCATAGG		97	33	0.34	111	0	0				58	28	0.48			
PLEKHG4B	153478	mdanderson.org	37	5	163611	163611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_052909	exon11	c.T2356C	p.S786P	CTGTCCTCCCCCT		59	3	0.05	74	0	0				1	0	0.00			
MROH2B	133558	broad.mit.edu	37	5	41057377	41057377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_173489	exon8	c.T842C	p.L281P	TGCTGGAGTAAAT		110	3	0.03	118	1	0.0084745763				0	0				
LOC100652772	0	broad.mit.edu	37	5	43588450	43588451	+	RNA	INS	-	-	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	AGGTTCCTTTTTT		6	2	0.33	5	0	0				0	0				
HMGCR	3156	broad.mit.edu	37	5	74654641	74654641	+	Missense_Mutation	SNP	G	G	T	rs373896859		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	HMGCR	NM_000859	exon16	c.G2146T	p.V716F	GCCAAGGTTGTCA		108	3	0.03	123	0	0		53		160	0	0.00			
GRAMD3	65983	broad.mit.edu	37	5	125809020	125809020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	GRAMD3	NM_001146319	exon5	c.G491T	p.W164L	AAAACTGGATTTG		239	6	0.03	258	0	0		30		5	0	0.00			
LMNB1	4001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	126171941	126171941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_005573	exon11	c.C1746A	p.S582R	TAGAAGCTGTGCA		243	52	0.21	267	0	0				259	80	0.31			
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	126755897	126755897	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_032446	exon13	c.C1588T	p.Q530X	CCCTGCCAGGTAT		58	13	0.22	67	0	0				0	0				
BTN2A3P	54718	hgsc.bcm.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	BTN2A3,NS,carcinoma,0,9	BTN2A3	.	.	.	.	ATGGAACCAGCTG		99	6	0.06	95	0	0		0	9	2	0	0.00			
VARS2	57176	broad.mit.edu	37	6	30888845	30888845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	VARS2	NM_001167734	exon16	c.G1573T	p.V525L	CAGGCTGTGGAGT		116	4	0.03	109	0	0		60		96	0	0.00			
ME1	4199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	83949272	83949272	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_002395	exon8	c.C898G	p.Q300E	CTCCTTGGAATAG		105	13	0.12	125	0	0				8	2	0.25			
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90467976	90467976	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_014611	exon19	c.C2700G	p.N900K	TCACCTGTTTCTT		107	22	0.21	100	0	0				40	6	0.15			
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	121526289	121526289	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_152730	exon22	c.A2502C	p.I834I	CAAAATTATAAGT		392	69	0.18	376	0	0				3	1	0.33			
.	0	bcgsc.ca	37	7	35479	35479	+	RNA	SNP	C	C	T	rs62429398		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	TGCCGCCGCCGCC		465	30	0.06	311	3	0.0096463023				0	0				
BRAT1	221927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	2580652	2580652	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_152743	exon10	c.C1356G	p.V452V	CAGGAGGACAGCA		276	100	0.36	207	0	0				211	53	0.25			
HOXA4	3201	mdanderson.org	37	7	27170154	27170154	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_002141	exon1	c.C199A	p.R67R	GCTCTCGGCCGCC		11	2	0.18	24	0	0				0	0				
ZNF680	340252	ucsc.edu	37	7	63981631	63981631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	ZNF680,NS,carcinoma,+1,1	ZNF680	NM_178558	exon4	c.C1501T	p.R501W	AGGACCGGTTAAA		179	1	0.01	121	0	0		58	1	51	15	0.29			
INTS4L2	0	broad.mit.edu	37	7	65139108	65139109	+	RNA	INS	-	-	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	CAGGAAGAAAAAA		9	4	0.44	9	0	0				0	0				
ELN	2006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73466166	73466166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ELN	NM_001081753	exon16	c.G901T	p.A301S	GGCATCGCAGGTA		191	34	0.18	134	1	0.0074626866		81		0	0				
MLL5	55904	broad.mit.edu	37	7	104747054	104747054	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	MLL5	NM_018682	exon19	c.G2682A	p.P894P	TTCCCCGTATGCT		402	6	0.01	207	0	0		173		26	0	0.00			
GSTK1	373156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142961249	142961249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001143681	exon2	c.T143A	p.M48K	GGATCATGAAAGA		211	24	0.11	163	0	0				103	17	0.17			
ATG9B	285973	broad.mit.edu;mdanderson.org	37	7	150713893	150713893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ATG9B	.	.	.	.	AGGTTGGCCAGGA		117	6	0.05	88	0	0		51		2	0	0.00			
GALNTL5	168391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151716815	151716815	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_145292	exon9	c.G1261C	p.G421R	CGACTGGGTTGCA		197	34	0.17	116	0	0				1	0	0.00			
CPQ	10404	broad.mit.edu	37	8	97892110	97892110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_016134	exon4	c.G726T	p.M242I	AATGATGTCAAGA		343	6	0.02	223	0	0				44	0	0.00			
ATAD2	29028	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	124383988	124383988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ATAD2	NM_014109	exon4	c.A458C	p.E153A	CGCACTTCAACAT		383	80	0.21	269	2	0.0074349442		160		90	15	0.17			
EPPK1	83481	mdanderson.org	37	8	144946192	144946192	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_031308	exon1	c.G1230A	p.R410R	CCGGAGCCTGCGT		38	3	0.08	23	0	0				5	0	0.00			
BAAT	570	mdanderson.org	37	9	104125233	104125233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001127610	exon4	c.C734A	p.A245D	TAAATAGCCATAG		48	3	0.06	82	0	0				0	0				
ZMYND19	116225	ucsc.edu;bcgsc.ca	37	9	140481474	140481474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ZMYND19	NM_138462	exon4	c.C304A	p.Q102K	CCAGTTGCAGGTT		40	4	0.10	35	0	0		16		274	0	0.00			
KDM5C	8242	mdanderson.org	37	X	53222378	53222378	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_004187	exon26	c.C4454A	p.S1485X	GGCCCTGAGCTCC		61	4	0.07	29	0	0				246	1	0.00			
HMGB3	3149	mdanderson.org	37	X	150156378	150156378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_005342	exon5	c.G594T	p.E198D	GGAGGAGGATGAA		20	2	0.10	13	0	0				88	0	0.00			
EPT1	85465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26587175	26587175	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	GTACAGTGCTGTG		58	22	0.38	55	0	0				22	8	0.36			
GPX1	2876	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	49395636	49395636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	CCCCGCCGGCCAG		111	33	0.30	97	0	0				1310	421	0.32			
