Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
ESPNP	0	broad.mit.edu	37	1	17034125	17034126	+	RNA	INS	-	-	AGCT	rs141324796	bycluster;by1000genomes	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	.	.	.	.	AGCAGCCAGCTGA		13	10	0.77	9	0	0				0	0				
NBL1	4681	broad.mit.edu	37	1	19981664	19981664	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	NBL1,NS,carcinoma,0,1	NBL1	NM_182744	exon2	c.C246T	p.S82S	CCACAGCGGCTGT		98	3	0.03	79	0	0		21	1	216	0	0.00			
WNT4	54361	mdanderson.org	37	1	22446566	22446566	+	Missense_Mutation	SNP	C	C	T	rs201176310	alternate_allele	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	WNT4,caecum,carcinoma,+1,1	WNT4	NM_030761	exon5	c.G1033A	p.V345M	ACTCCACGAGCCG		44	4	0.09	43	0	0		1	1	0	0				
LEPRE1	64175	mdanderson.org	37	1	43213951	43213951	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_022356	exon12	c.C1758A	p.V586V	CACGTGGACTGGA		41	3	0.07	50	0	0				57	0	0.00			
FAF1	11124	broad.mit.edu	37	1	50907170	50907170	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	FAF1	NM_007051	exon19	c.C1895A	p.S632X	AATAATGATTTAT		131	4	0.03	121	1	0.0082644628		64		152	0	0.00			
NEXN	91624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	78407806	78407808	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	AGA	AGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	NEXN	NM_144573	exon12	c.1571_1573del	p.524_525del	GGCAAGAGAAGAA		158	26	0.16	164	0	0		77		28	0	0.00			
SEC22B	9554	broad.mit.edu	37	1	145109975	145109976	+	RNA	INS	-	-	C	rs11458983	bycluster	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	.	.	.	.	AACTTTGCTAAAG		8	3	0.38	5	0	0				0	0				
NBPF10	100132406	hgsc.bcm.edu	37	1	145293535	145293535	+	Missense_Mutation	SNP	C	C	G	rs55936365		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	NBPF10,NS,carcinoma,0,2	NBPF10	NM_001039703	exon1	c.C130G	p.L44V	TGTTTTCTAACTC		92	9	0.10	67	1	0.0149253731		0	2	19	0	0.00			
APH1A	51107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150238547	150238547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_001077628	exon7	c.A781G	p.I261V	GTGGGATGCGCAG		411	124	0.30	323	0	0				198	47	0.24			
SLAMF6	114836	broad.mit.edu	37	1	160465888	160465888	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	SLAMF6,NS,carcinoma,0,1	SLAMF6	NM_052931	exon2	c.C345A	p.T115T	TGCAGAGGTCTTT		315	5	0.02	262	0	0		46	1	22	0	0.00			
BNIP3	664	mdanderson.org	37	10	133784438	133784438	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_004052	exon4	c.G319T	p.E107X	TGCTTTCAACTTC		50	3	0.06	65	0	0				438	0	0.00			
MUC2	4583	hgsc.bcm.edu	37	11	1092884	1092884	+	Missense_Mutation	SNP	C	C	T	rs201415503		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	MUC2_ENST00000441003,NS,carcinoma,0,8	MUC2_ENST00000441003	NM_002457	exon30	c.C4703T	p.T1568M	CCACCACGGTGAC		57	5	0.09	44	1	0.0227272727		0	8	0	0				
LTBP3	4054	broad.mit.edu	37	11	65325326	65325328	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	CAG	CAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	LTBP3	NM_001130144	exon1	c.103_105del	p.35_35del	CAGGCCCAGCAGC		10	4	0.40	7	0	0		55		0	0				
TMEM151A	256472	mdanderson.org	37	11	66062288	66062288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_153266	exon2	c.G571A	p.G191S	GCCCGCGGCGAGT		25	2	0.08	27	0	0				0	0				
POLD3	10714	broad.mit.edu;mdanderson.org	37	11	74351712	74351712	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	POLD3	NM_006591	exon12	c.A1302G	p.K434K	GAAAAAAGAACCC		101	4	0.04	97	0	0		87		40	0	0.00			
APOA4	337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116692311	116692311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_000482	exon3	c.C463T	p.R155C	GCTGGCGCCGCAG		43	11	0.26	38	0	0				0	0				
IFFO1	25900	bcgsc.ca;mdanderson.org	37	12	6650731	6650731	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	IFFO1	NM_001193457	exon9	c.C1557A	p.G519G	GTCCAGGCCGCGC		103	5	0.05	84	0	0		55		40	0	0.00			
BCL2L14	79370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	12232368	12232368	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_138723	exon2	c.C129T	p.F43F	TCTCTTCTCACCA		156	29	0.19	122	0	0				4	0	0.00			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	G	rs121913529	bycluster	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	KRAS_ENST00000256078,NS,adenocarcinoma,0,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G35C	p.G12A	ACGCCACCAGCTC		285	48	0.17	197	0	0		0	25136	16	3	0.19			
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32134098	32134098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_018169	exon4	c.C209T	p.P70L	ATTATCCTCAACA		163	28	0.17	114	0	0				81	12	0.15			
TPTE2	93492	bcgsc.ca	37	13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	rs201542496		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	TPTE2	NM_199254	exon5	c.A121G	p.M41V	CTAACATACTTTA		586	13	0.02	572	3	0.0052447552		225		0	0				
EBPL	84650	broad.mit.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	EBPL,NS,carcinoma,0,9	EBPL	NM_032565	exon4	c.C565G	p.L189V	GTTCTAGCCATGA		162	3	0.02	149	0	0		44	9	127	0	0.00			
TPP2	7174	mdanderson.org	37	13	103290652	103290652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_003291	exon15	c.G1900T	p.V634F	ACTGCAGTTATAG		33	3	0.09	41	0	0				49	0	0.00			
CLEC14A	161198	mdanderson.org	37	14	38725067	38725067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_175060	exon1	c.G161A	p.C54Y	AGGATGCAGGCCT		23	2	0.09	16	0	0				1	0	0.00			
PNN	5411	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	39651005	39651005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_002687	exon9	c.G2092T	p.G698C	CGATCAGGCAAAA		58	4	0.07	39	0	0				370	0	0.00			
MTHFD1	4522	broad.mit.edu	37	14	64914955	64914955	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	MTHFD1	NM_005956	exon23	c.A2199G	p.K733K	TGAAAAAGGCTTC		116	4	0.03	92	0	0		61		251	0	0.00			
ELMSAN1	91748	broad.mit.edu	37	14	74194213	74194213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_194278	exon5	c.A2110C	p.T704P	GCGGGGTTACTTC		84	22	0.26	45	10	0.2222222222				35	3	0.09			
IRF2BPL	64207	mdanderson.org	37	14	77493340	77493340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_024496	exon1	c.G796A	p.A266T	CGCTGGCCGGGCC		21	2	0.10	22	0	0				85	0	0.00			
CEP170B	283638	mdanderson.org	37	14	105352414	105352414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_001112726	exon11	c.G1982T	p.W661L	AGAAGTGGGTGTC		46	3	0.07	44	0	0				15	0	0.00			
LOXL1	4016	mdanderson.org	37	15	74219685	74219685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_005576	exon1	c.G561T	p.Q187H	CAGCCAGTACGAG		45	3	0.07	35	0	0				7	0	0.00			
SCAMP2	10066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75143705	75143705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_005697	exon5	c.A461C	p.Y154S	CACAGATAGTAGA		73	7	0.10	49	0	0				192	35	0.18			
NETO2	81831	mdanderson.org	37	16	47163244	47163244	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_001201477	exon3	c.T123C	p.P41P	GGTTGCAGGAATA		47	3	0.06	42	0	0				58	0	0.00			
PHKB	5257	mdanderson.org	37	16	47531334	47531334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_000293	exon2	c.G101T	p.S34I	TTAAAAGCATTAA		50	3	0.06	48	0	0				35	0	0.00			
HSF4	3299	mdanderson.org	37	16	67200242	67200242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_001538	exon7	c.C505T	p.R169W	TTGTGGCGGGAGG		104	5	0.05	89	0	0				4	0	0.00			
ANKRD11	29123	broad.mit.edu	37	16	89351844	89351844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	ANKRD11	NM_001256183	exon9	c.A1106G	p.K369R	TAGTCCTTTTTCA		172	4	0.02	147	0	0		195		79	0	0.00			
PHF23	79142	mdanderson.org	37	17	7140047	7140047	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_024297	exon4	c.C199A	p.R67R	CTCCTCGCAATGG		52	3	0.06	60	0	0				163	0	0.00			
MYOCD	93649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12656145	12656145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	MYOCD	NM_001146312	exon10	c.G1540A	p.D514N	GGGCTGGACTCCG		129	23	0.18	137	1	0.0072992701		291		0	0				
MYO1D	4642	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	31094740	31094740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	MYO1D	NM_015194	exon7	c.G745A	p.V249I	CAACAACTCTGAA		49	5	0.10	56	0	0		93		16	7	0.44			
KIF19	124602	mdanderson.org	37	17	72350311	72350311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_153209	exon18	c.G2319T	p.E773D	GAAGGAGATCCTG		49	3	0.06	29	0	0				0	0				
FBF1	85302	mdanderson.org	37	17	73909787	73909787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_001080542	exon27	c.G3198T	p.Q1066H	ACCACTCTGGCTG		18	2	0.11	14	0	0				16	0	0.00			
MED16	10025	mdanderson.org	37	19	886142	886142	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_005481	exon5	c.G507A	p.T169T	GAACAGCGTGAGC		23	3	0.13	17	0	0				30	0	0.00			
LYL1	4066	broad.mit.edu	37	19	13211480	13211480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	LYL1	NM_005583	exon3	c.C418A	p.L140M	CAGCCAGGTCCAG		221	5	0.02	160	0	0		17		24	0	0.00			
PRX	57716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40901937	40901937	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_181882	exon7	c.G2322T	p.V774V	CAGCTTCACCTCT		88	33	0.38	64	0	0				6	4	0.67			
ACPT	93650	bcgsc.ca	37	19	51293729	51293729	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	ACPT,NS,carcinoma,0,1	ACPT	NM_033068	exon1	c.C58G	p.L20V	CTGCTGCTGGTGC		34	4	0.12	44	0	0		43	1	0	0				
INO80B	83444	mdanderson.org	37	2	74684838	74684838	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_031288	exon5	c.G918A	p.P306P	CCCGCCGCCGCGC		32	3	0.09	27	0	0				29	0	0.00			
SFTPB	6439	mdanderson.org	37	2	85890594	85890594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_198843	exon9	c.C913A	p.L305M	GCGGCAGCCATTC		55	3	0.05	73	0	0				2	0	0.00			
.	400986	broad.mit.edu	37	2	96646519	96646519	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	ENSG00000174501,NS,carcinoma,0,2	.	.	.	.	.	ACAGCATGTATGA		294	5	0.02	202	1	0.004950495			2	0	0				
ANKRD36B	57730	mdanderson.org	37	2	98165905	98165905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_025190	exon20	c.A1454G	p.K485R	CCATCCTTTTTTT		27	2	0.07	14	0	0				3	0	0.00			
INPP4A	3631	broad.mit.edu	37	2	99185080	99185080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	INPP4A	NM_001134224	exon23	c.G2482T	p.V828L	AGTTTGGTGCGGT		427	6	0.01	304	0	0		205		42	0	0.00			
PPIG	9360	broad.mit.edu	37	2	170493804	170493804	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	PPIG	NM_004792	exon14	c.2036delA	p.E679fs	GCAGGGAAAAAAA		186	7	0.04	158	0	0		100		178	0	0.00			
OBSL1	23363	broad.mit.edu	37	2	220423154	220423154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	OBSL1	NM_001173431	exon10	c.C3254A	p.A1085E	CGGGCTGCCGGGT		69	8	0.12	35	1	0.0285714286		120		8	1	0.13			
ANO7	50636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242142853	242142853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	ANO7,NS,carcinoma,-1,1	ANO7	NM_001001891	exon9	c.C991T	p.P331S	TACCAGCCCCTGG		498	77	0.15	375	0	0		-1	1	1	0	0.00			
RALY	22913	broad.mit.edu	37	20	32664877	32664877	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	RALY	NM_016732	exon8	c.C702T	p.G234G	CGGCGGCGGTGGT		150	4	0.03	92	1	0.0108695652		44		140	2	0.01			
PROCR	10544	broad.mit.edu	37	20	33762727	33762727	+	Missense_Mutation	SNP	G	G	T	rs200377875		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	PROCR,NS,carcinoma,0,3	PROCR	NM_006404	exon2	c.G293T	p.R98L	TCGTGCGCCTGGT		71	5	0.07	39	0	0		26	3	37	2	0.05			
PTPRT	11122	broad.mit.edu	37	20	40790055	40790055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	PTPRT,bladder,carcinoma,-2,1	PTPRT	NM_133170	exon18	c.C2676A	p.D892E	CAGCAAGTCAGCC		207	5	0.02	184	0	0		372	1	2	0	0.00			
UCKL1	54963	mdanderson.org	37	20	62572531	62572531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_017859	exon9	c.C954A	p.H318Q	CAGCGGGTGGCAC		24	2	0.08	14	0	0				77	0	0.00			
KRTAP10-4	386672	mdanderson.org	37	21	45994676	45994676	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_198687	exon1	c.A1041G	p.P347P	CCAGCCAGCTTGC		52	5	0.10	30	0	0				0	0				
LIF	0	broad.mit.edu	37	22	30642576	30642576	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	LIF	.	.	.	.	GGCGGGTGGGCGT		53	35	0.66	61	35	0.5737704918		18		0	0				
BRD1	23774	mdanderson.org	37	22	50192713	50192713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_014577	exon3	c.C1579T	p.R527W	GCAGCCGCTGCCA		50	3	0.06	36	0	0				40	0	0.00			
DHX30	22907	broad.mit.edu	37	3	47891431	47891431	+	Missense_Mutation	SNP	C	C	T	rs144869940		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	DHX30	NM_138615	exon22	c.C3406T	p.R1136W	ACCGTGCGGCTGC		109	4	0.04	104	0	0		101		112	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	C	rs121913506	bycluster	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446C	p.D816H	GCCAGAGACATCA		98	24	0.24	96	0	0		0	932	181	121	0.67			
AGA	175	broad.mit.edu	37	4	178355608	178355608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	AGA	NM_000027	exon7	c.C734A	p.A245D	GCATAGGCTCCAG		260	5	0.02	243	0	0		39		80	1	0.01			
MIR1305	0	broad.mit.edu	37	4	183090235	183090236	+	RNA	INS	-	-	AT	rs35135947	bycluster;by1000genomes	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	.	.	.	.	CACACACACACAC		15	5	0.33	8	0	0				0	0				
PIK3R1	5295	broad.mit.edu	37	5	67588169	67588169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	PIK3R1,colon,carcinoma,+2,1	PIK3R1	NM_181523	exon8	c.G999T	p.W333C	TGAATGGTACTGG		108	4	0.04	112	0	0		869	1	35	0	0.00			
FBN2	2201	mdanderson.org	37	5	127800526	127800526	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_001999	exon6	c.C717T	p.C239C	GGCACAGCACAGA		93	4	0.04	99	0	0				0	0				
SPRY4	81848	mdanderson.org	37	5	141694655	141694655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_030964	exon3	c.C88A	p.Q30K	CGCTCTGTGGGAT		39	3	0.08	39	0	0				137	0	0.00			
FAM8A1	51439	hgsc.bcm.edu	37	6	17602826	17602826	+	Nonsense_Mutation	SNP	G	G	T	rs74444948	bycluster;byfrequency	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	FAM8A1,NS,carcinoma,-1,2	FAM8A1	NM_016255	exon2	c.G718T	p.E240X	GGCAGAGAATATG		68	8	0.12	49	1	0.0204081633	0.008	-1	2	10	0	0.00			
BCKDHB	594	broad.mit.edu	37	6	80838937	80838937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	BCKDHB	NM_000056	exon3	c.G334T	p.D112Y	TTGCGAGACAAAT		414	6	0.01	275	0	0		36		19	0	0.00			
MIR548H3	100302287	hgsc.bcm.edu	37	6	97720567	97720567	+	RNA	SNP	A	A	G	rs200808076	alternate_allele	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	.	.	.	.	CAAATGAAACAAG		81	8	0.10	79	0	0				0	0				
.	0	bcgsc.ca	37	7	35473	35473	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	.	.	.	.	TGCTGCTGCCGCC		567	21	0.04	425	12	0.0282352941				3	1	0.33	rescued with RNA-seq		
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	.	.	.	.	CCGGGGTCCTTGA		174	5	0.03	116	0	0				0	0				
FAM185A	222234	broad.mit.edu	37	7	102401776	102401776	+	Silent	SNP	T	T	G	rs2537454		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	FAM185A	NM_001145268	exon4	c.T711G	p.G237G	AGATGGTTTGCTG		688	4	0.01	484	1	0.0020661157		10		7	0	0.00			
DENND2A	27147	broad.mit.edu	37	7	140221669	140221669	+	Missense_Mutation	SNP	C	C	T	rs202110826	by1000genomes	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	DENND2A	NM_015689	exon16	c.G2897A	p.R966Q	TCCTGCCGGCGCA		208	5	0.02	122	0	0		132		30	0	0.00			
TRPV5	56302	broad.mit.edu	37	7	142605705	142605705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	TRPV5	NM_019841	exon15	c.A2165G	p.D722G	TCTCCATCCCCCT		161	6	0.04	132	0	0		164		0	0				
CLDN23	137075	broad.mit.edu;mdanderson.org	37	8	8560263	8560263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	CLDN23	NM_194284	exon1	c.G355T	p.V119F	TCGGGCGTCGTGC		53	3	0.06	48	0	0		5		1	0	0.00			
PPP2R2A	5520	broad.mit.edu	37	8	26217684	26217684	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	PPP2R2A	NM_002717	exon5	c.347-1G>T	.	TTCCCAGATAAAA		54	3	0.06	53	0	0		44		1	0	0.00			
ADAM2	2515	broad.mit.edu	37	8	39694657	39694657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	ADAM2	NM_001464	exon2	c.C130A	p.Q44K	TTACCTGCGATTC		227	5	0.02	151	0	0		124		0	0				
KANK1	23189	broad.mit.edu	37	9	732477	732477	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	KANK1_ENST00000382303,NS,carcinoma,0,4	KANK1	NM_001256876	exon10	c.G3105A	p.E1035E	AGAAGAGGAGGAG		141	4	0.03	101	1	0.0099009901		231	4	57	0	0.00			
PPAPDC2	403313	mdanderson.org	37	9	4662565	4662565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_203453	exon1	c.C190A	p.P64T	GAGAGCCCAGTTC		9	1	0.11	11	0	0				1	0	0.00			
RUSC2	9853	broad.mit.edu	37	9	35556093	35556093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	RUSC2	NM_014806	exon4	c.G2801A	p.G934D	TCCCTGGCTCCCT		190	5	0.03	153	0	0		88		65	0	0.00			
ZNF618	114991	broad.mit.edu	37	9	116811230	116811230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	ZNF618	NM_133374	exon14	c.G1369T	p.G457C	GGCATCGGTGTCA		81	4	0.05	63	0	0		184		14	0	0.00			
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	134497251	134497253	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	AGG	AGG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	RAPGEF1	NM_198679	exon11	c.1839_1841del	p.613_614del	CACTGAAGGAGTC		144	23	0.16	143	0	0		126		93	0	0.00			
ADAMTS13	11093	mdanderson.org	37	9	136297802	136297802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_139025	exon9	c.G1081T	p.G361C	GAATGTGGCGTGG		27	2	0.07	27	0	0				0	0				
UBAC1	10422	mdanderson.org	37	9	138852939	138852939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_016172	exon1	c.G70A	p.A24T	ACTCGGCGCCGTC		34	3	0.09	34	0	0				47	0	0.00			
ND5	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	13448	13448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	ENST00000361567	exon1	c.C1112T	p.T371I	CTTCAACCTCCCT		20	9	0.45	18	0	0				0	0				
PNPLA4	8228	broad.mit.edu	37	X	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	PNPLA4	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT		430	8	0.02	300	0	0		24		20	0	0.00			
CYLC1	1538	broad.mit.edu	37	X	83129489	83129489	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	CYLC1	NM_021118	exon4	c.A1773G	p.K591K	TGAAAAAGGGGAA		210	3	0.01	211	0	0		272		0	0				
SASH3	54440	mdanderson.org	37	X	128926627	128926627	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_018990	exon6	c.G616T	p.E206X	ATCATTGAAAAGC		36	3	0.08	29	0	0				52	0	0.00			
USP9Y	8287	broad.mit.edu	37	Y	14952959	14952959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	USP9Y	NM_004654	exon37	c.G6112T	p.A2038S	CCTGAAGCAGAAG		180	4	0.02	149	0	0		49		13	0	0.00			
