Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
SCNN1D	6339	mdanderson.org	37	1	1223348	1223348	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001130413	exon12	c.C1593T	p.Y531Y	CCCCTACGGCCAC		81	4	0.05	67	0	0				5	0	0.00			
CSF3R	1441	broad.mit.edu	37	1	36932281	36932281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	CSF3R	NM_156039	exon17	c.C2269A	p.Q757K	CCCCCTGGAGCAC		69	3	0.04	111	0	0		157		85	0	0.00			
FOXJ3	22887	broad.mit.edu	37	1	42693609	42693609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	FOXJ3	NM_001198852	exon5	c.C473A	p.P158Q	TCCTTCGGATTGG		96	3	0.03	160	0	0		59		25	0	0.00			
C1orf177	163747	hgsc.bcm.edu	37	1	55277575	55277575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001110533	exon5	c.A589G	p.S197G	AGGATGAGCAACA		123	5	0.04	120	0	0				0	0				
SLC30A7	148867	broad.mit.edu;mdanderson.org	37	1	101387372	101387372	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	SLC30A7	NM_001144884	exon8	c.C817G	p.L273V	TCAATTCTTATAG		54	3	0.06	71	0	0		33		11	2	0.18			
DENND2C	163259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115130380	115130380	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001256404	exon19	c.A2625G	p.A875A	GAATCCTGCAAAC		108	15	0.14	113	0	0				7	3	0.43			
.	0	broad.mit.edu;bcgsc.ca	37	1	247886683	247886685	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	GGA	GGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	.	.	.	.	TACAGTGGAGAAG		76	9	0.12	88	0	0				0	0				
DDIT4	54541	mdanderson.org	37	10	74034544	74034544	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_019058	exon3	c.G297T	p.L99L	GCAGCTGCTGCAG		36	3	0.08	58	0	0				89	0	0.00			
PKD2L1	9033	ucsc.edu	37	10	102050229	102050229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	PKD2L1	NM_016112	exon13	c.C2055A	p.S685R	TGGGCTGCTCACA		38	4	0.11	53	0	0		103		3	0	0.00			
MUC6	4588	bcgsc.ca	37	11	1016871	1016871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	MUC6	NM_005961	exon31	c.C5930A	p.P1977H	GAGAAGGGACTGC		357	13	0.04	409	9	0.02200489		408		1	0	0.00			
OR51B6	390058	broad.mit.edu	37	11	5373576	5373576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	OR51B6	NM_001004750	exon1	c.T839C	p.L280P	ACTTCCTTTTCCC		92	3	0.03	115	0	0		53		0	0				
.	0	bcgsc.ca	37	11	62815368	62815368	+	RNA	SNP	G	G	A	rs7125680	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	.	.	.	.	GGTGCAGCATGCC		43	7	0.16	36	0	0				0	0				
CAPN1	823	bcgsc.ca	37	11	64956151	64956152	+	Frame_Shift_Ins	INS	-	-	ACACCAC	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	CAPN1	NM_001198869	exon10	c.1099_1100insACACCAC	p.N367fs	AAATGGAACACCA		84	5	0.06	115	0	0		44		128	0	0.00			
PPFIA1	8500	mdanderson.org	37	11	70184504	70184504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_003626	exon13	c.G1516T	p.A506S	ATTGAAGCACTGA		39	3	0.08	60	0	0				92	0	0.00			
AMOTL1	154810	mdanderson.org	37	11	94592856	94592856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_130847	exon9	c.C2111T	p.A704V	TGAATGCCGCAGC		35	3	0.09	92	0	0				5	0	0.00			
C11orf1	64776	mdanderson.org	37	11	111754552	111754552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_022761	exon4	c.G401T	p.R134L	CTCCCCGATACAA		54	3	0.06	81	0	0				40	0	0.00			
RERGL	79785	mdanderson.org	37	12	18238558	18238558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_024730	exon4	c.C182A	p.S61Y	ACTTGAGAACAAG		41	3	0.07	57	0	0				0	0				
ASCL1	429	mdanderson.org	37	12	103352218	103352218	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_004316	exon1	c.C196T	p.L66L	CCGCAGCTGAGAC		44	3	0.07	35	0	0				0	0				
NT5DC3	51559	mdanderson.org	37	12	104190747	104190747	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001031701	exon6	c.C678A	p.L226L	GGACAGGAGGGTC		42	3	0.07	72	0	0				19	0	0.00			
CYSLTR2	57105	mdanderson.org	37	13	49280977	49280977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_020377	exon1	c.G24T	p.L8F	GTCCTTGCAACCA		45	3	0.07	67	0	0				0	0				
LRRC16B	90668	mdanderson.org	37	14	24529228	24529228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_138360	exon23	c.G1918T	p.A640S	TCCCAAGCCTATC		49	3	0.06	46	0	0				10	0	0.00			
WHAMMP3	0	broad.mit.edu	37	15	23191911	23191911	+	RNA	SNP	C	C	T	rs692550	bycluster;bysubmitter;by2hit2allele	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	.	.	.	.	TTTCTTCGCACTG		26	6	0.23	25	0	0				0	0				
MYO9A	4649	mdanderson.org	37	15	72208799	72208799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_006901	exon19	c.C2597A	p.T866K	AGTCTTGTCAGGT		45	3	0.07	67	0	0				32	0	0.00			
TSC2	7249	mdanderson.org	37	16	2106707	2106707	+	Silent	SNP	G	G	T	rs189380607	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001114382	exon8	c.G711T	p.P237P	CCTCCCGCTGTTC		39	3	0.08	61	0	0				40	1	0.03			
OR2C1	4993	mdanderson.org	37	16	3406282	3406282	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_012368	exon1	c.G342T	p.L114L	CATCCTGCTGGTG		32	3	0.09	48	0	0				3	0	0.00			
IL27	246778	broad.mit.edu	37	16	28511194	28511194	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	IL27	NM_145659	exon5	c.G510A	p.E170E	CTCCTCCTCTTCC		47	4	0.09	48	0	0		27		4	0	0.00			
IL27	246778	broad.mit.edu	37	16	28511197	28511197	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	IL27	NM_145659	exon5	c.A507G	p.E169E	CTCCTCTTCCTCC		46	5	0.11	44	0	0		27		4	0	0.00			
METTL16	79066	mdanderson.org	37	17	2323696	2323696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_024086	exon10	c.C1257A	p.S419R	TTCTTGGCTATTG		35	3	0.09	47	0	0				45	0	0.00			
NEURL4	84461	mdanderson.org	37	17	7225246	7225246	+	Missense_Mutation	SNP	C	C	T	rs199946910	bycluster;by1000genomes	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_032442	exon17	c.G2809A	p.A937T	AGCCAGCGGCACG		41	3	0.07	44	0	0	0			24	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		148	10	0.07	220	11	0.05				36	15	0.42			
CCL15	6359	mdanderson.org	37	17	34325386	34325386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_032965	exon3	c.C178A	p.Q60K	TGCTTTGTGAGAT		44	4	0.09	61	0	0				3	0	0.00			
ARHGAP23	57636	mdanderson.org	37	17	36654704	36654704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001199417	exon22	c.C3367A	p.L1123I	GAGTACCTCCTGC		46	3	0.07	65	0	0				30	0	0.00			
PLEKHH3	79990	mdanderson.org	37	17	40822007	40822007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_024927	exon11	c.G1942A	p.A648T	GGTAGGCGGCCAT		33	3	0.09	37	0	0				9	0	0.00			
KCNH6	81033	broad.mit.edu	37	17	61607872	61607872	+	Missense_Mutation	SNP	G	G	T	rs146703318	alternate_allele	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	KCNH6	NM_030779	exon4	c.G644T	p.R215L	TGGAGCGGACACA		103	4	0.04	109	0	0		122		1	0	0.00			
GPRC5C	55890	mdanderson.org	37	17	72436963	72436963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_022036	exon2	c.G1183T	p.A395S	CCGGTTGCAGGTG		37	3	0.08	38	0	0				256	0	0.00			
DUS1L	64118	mdanderson.org	37	17	80018749	80018749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_022156	exon9	c.C931T	p.R311W	GACACCGCAGCTT		37	3	0.08	37	0	0				143	0	0.00			
MC4R	4160	mdanderson.org	37	18	58039043	58039043	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_005912	exon1	c.A540G	p.S180S	AATGCCTGAAACC		38	3	0.08	46	0	0				0	0				
CCDC102B	79839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	66504042	66504042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001093729	exon4	c.G42T	p.Q14H	AACACAGATCTTC		43	6	0.14	52	0	0				4	0	0.00			
PTBP1	5725	mdanderson.org	37	19	804539	804539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_031991	exon6	c.A443G	p.Q148R	GGGCCCAGGCGGC		22	2	0.09	17	0	0				530	1	0.00			
CD97	976	mdanderson.org	37	19	14513646	14513646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_078481	exon12	c.G1421T	p.G474V	CCGATGGGGAGGC		51	3	0.06	48	0	0				252	0	0.00			
MEF2B	100271849	mdanderson.org	37	19	19256700	19256700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001145785	exon9	c.C1013A	p.P338H	GGATAGGGGAAGG		22	3	0.14	29	0	0				5	0	0.00			
NUDT19	390916	broad.mit.edu	37	19	33183263	33183263	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	NUDT19	NM_001105570	exon1	c.397delT	p.F133fs	GAGGCCTTTGAGG		6	2	0.33	16	0	0		15		1	0	0.00			
PPP1R14A	94274	mdanderson.org	37	19	38746835	38746835	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_033256	exon1	c.C145A	p.R49R	CCAGCCGCCGCTG		28	3	0.11	33	0	0				67	0	0.00			
CD79A	973	mdanderson.org	37	19	42383293	42383293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001783	exon2	c.G313T	p.V105L	ATATACGTGTGCC		20	3	0.15	18	0	0				148	0	0.00			
.	400986	broad.mit.edu	37	2	96521862	96521862	+	Missense_Mutation	SNP	T	T	A	rs72931734	bycluster	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	ENSG00000174501,NS,carcinoma,0,8	.	.	.	.	.	TGAGCCTGGCAAT		140	6	0.04	177	0	0			8	20	3	0.15			
LONRF2	164832	mdanderson.org	37	2	100916315	100916315	+	Silent	SNP	A	A	T	rs11123823	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	LONRF2,NS,carcinoma,0,1	LONRF2	NM_198461	exon5	c.T1131A	p.G377G	GTGTAGACCCAGT		75	3	0.04	78	0	0		0	1	2	0	0.00			
TMEM87B	84910	mdanderson.org	37	2	112843654	112843654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_032824	exon9	c.T911C	p.I304T	TGATCATTGTGAG		50	3	0.06	75	0	0				18	0	0.00			
PAX8	7849	ucsc.edu;mdanderson.org	37	2	113992973	113992973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	PAX8	NM_003466	exon9	c.C1085A	p.S362X	GTACCTGAGAGGA		52	5	0.10	45	0	0		42		15	0	0.00			
THAP4	51078	mdanderson.org	37	2	242572743	242572743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_015963	exon2	c.G829A	p.D277N	CCTTGTCGGGTCC		34	3	0.09	48	0	0				231	0	0.00			
COL18A1	80781	mdanderson.org	37	21	46897716	46897716	+	Missense_Mutation	SNP	G	G	T	rs373030953	alternate_allele	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_030582	exon7	c.G1598T	p.R533L	CTGGCCGGGCAGG		47	3	0.06	41	0	0				43	0	0.00			
CCDC174	51244	mdanderson.org	37	3	14693367	14693367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_016474	exon1	c.G24T	p.L8F	GCCTTTGGACGTC		39	3	0.08	50	0	0				22	0	0.00			
HACL1	26061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15633164	15633164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_012260	exon4	c.C251T	p.S84F	GGGCCAGAAACAA		128	18	0.14	199	0	0				52	26	0.50			
ARIH2OS	646450	mdanderson.org	37	3	48955993	48955993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	C3orf71,NS,carcinoma,0,1	C3orf71	NM_001123040	exon1	c.C590A	p.A197E	ACTGACGCCAGGA		47	3	0.06	64	0	0		0	1	15	0	0.00			
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52522318	52522318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_007184	exon16	c.A2810G	p.N937S	GTCGCAACCGCAA		34	7	0.21	49	0	0				185	80	0.43			
DNAJC13	23317	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132199260	132199260	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	DNAJC13	NM_015268	exon26	c.G2820T	p.V940V	CCTTGTGGACTTG		45	5	0.11	83	0	0		253		47	0	0.00			
MUC4	4585	hgsc.bcm.edu	37	3	195515102	195515102	+	Missense_Mutation	SNP	G	G	C	rs199995135		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.C3349G	p.H1117D	TGGTGTGACCTGT		84	6	0.07	114	2	0.0175438596		0	1	0	0				
GUF1	60558	mdanderson.org	37	4	44691417	44691417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_021927	exon10	c.C1193T	p.A398V	TGGGTGCTGGCTG		47	3	0.06	81	0	0				41	0	0.00			
.	0	broad.mit.edu	37	4	66960408	66960411	+	RNA	DEL	AAAT	AAAT	-	rs142153899	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	AAAT	AAAT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	.	.	.	.	GGTAAAAAATAAA		6	2	0.33	4	0	0				30	0	0.00			
ALB	213	mdanderson.org	37	4	74272367	74272367	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_000477	exon3	c.G159A	p.Q53Q	TGCTCAGTATCTT		52	3	0.06	56	0	0				0	0				
DSPP	1834	broad.mit.edu	37	4	88536863	88536863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	DSPP	NM_014208	exon5	c.A3049G	p.N1017D	AGCAGTAATAGTA		56	4	0.07	71	1	0.014084507		174		0	0				
FLJ33360	0	broad.mit.edu	37	5	6337066	6337067	+	RNA	DEL	AC	AC	-	rs371668571	alternate_allele	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	AC	AC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	.	.	.	.	ATACATACACACA		6	2	0.33	8	0	0				0	0				
SLC22A4	6583	mdanderson.org	37	5	131630459	131630459	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_003059	exon1	c.T150C	p.C50C	CCGCTGTCGAGTG		54	3	0.06	55	0	0				2	0	0.00			
FOXF2	2295	broad.mit.edu	37	6	1391085	1391086	+	In_Frame_Ins	INS	-	-	GGC	rs147426137	bycluster;by1000genomes	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	FOXF2	NM_001452	exon1	c.903_904insGGC	p.G301delinsGG	GGCCGGGGGCGGC		7	3	0.43	6	0	0		28		0	0				
FOXC1	2296	mdanderson.org	37	6	1610801	1610801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001453	exon1	c.C121T	p.P41S	GCCATGCCGGCCC		45	3	0.07	65	0	0				0	0				
HIST1H2BJ	8970	broad.mit.edu	37	6	27100492	27100492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	HIST1H2BJ,NS,carcinoma,+1,1	HIST1H2BJ	NM_021058	exon1	c.A38G	p.K13R	GAGCCCTTTTTCG		110	4	0.04	112	0	0		21	1	54	0	0.00			
ITPR3	3710	mdanderson.org	37	6	33655070	33655070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_002224	exon45	c.A6143G	p.E2048G	CACGTGAAGTGGG		39	3	0.08	56	0	0				48	0	0.00			
FNDC1	84624	mdanderson.org	37	6	159654735	159654735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_032532	exon11	c.T3191C	p.L1064P	GGATGCTCCCCAC		26	2	0.08	30	0	0				5	0	0.00			
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	4056919	4056919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	SDK1,lower_third,carcinoma,0,1	SDK1	NM_152744	exon17	c.C2537T	p.A846V	AGGTGGCGGCGTA		115	5	0.04	171	0	0		0	1	6	0	0.00			
TWIST1	7291	mdanderson.org	37	7	19156499	19156499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_000474	exon1	c.T446C	p.L149P	AGCTTGAGGGTCT		41	3	0.07	81	0	0				125	0	0.00			
FZD1	8321	mdanderson.org	37	7	90894958	90894958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_003505	exon1	c.G763T	p.G255C	CACGGCGGCGGAG		32	3	0.09	21	0	0				8	0	0.00			
THAP5	168451	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	108204781	108204781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	THAP5	NM_001130475	exon3	c.C1042A	p.L348I	ACTCTAGAAGAGT		102	11	0.11	160	1	0.00625		51		27	5	0.19			
.	0	broad.mit.edu	37	7	123674631	123674632	+	RNA	INS	-	-	T	rs71163720	bycluster	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	.	.	.	.	TGGGGAATTTTTT		5	1	0.20	4	0	0				0	0				
.	0	broad.mit.edu	37	7	128217774	128217800	+	RNA	DEL	GGGGGAGAGGGAGAGGGAGAGGGAGAA	GGGGGAGAGGGAGAGGGAGAGGGAGAA	-	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	GGGGGAGAGGGAGAGGGAGAGGGAGAA	GGGGGAGAGGGAGAGGGAGAGGGAGAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	.	.	.	.	GGAGAGGGGGGAG		6	5	0.83	4	0	0				0	0				
BHLHE22	27319	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	65494286	65494286	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	BHLHE22	NM_152414	exon1	c.C939T	p.G313G	CCAGGGCCAGGCC		26	4	0.15	27	0	0		21		1	0	0.00			
RDH10	157506	broad.mit.edu;mdanderson.org	37	8	74207595	74207595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	RDH10	NM_172037	exon1	c.G71A	p.R24H	CGGCGCGCTGGCT		34	3	0.09	27	0	0		31		10	0	0.00			
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121210074	121210074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_021110	exon7	c.C617T	p.P206L	GTGACCCCAGAAT		104	17	0.16	108	0	0				11	0	0.00			
GRINA	2907	broad.mit.edu	37	8	145065539	145065539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	GRINA	NM_001009184	exon2	c.T148C	p.S50P	CAGCCCTCCCCCT		148	5	0.03	140	0	0		25		263	1	0.00			
RUSC2	9853	mdanderson.org	37	9	35548533	35548533	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_014806	exon2	c.2014+1G>T	.	CTGACGGTAAGGA		21	2	0.10	25	0	0				0	0				
LOC642236	0	bcgsc.ca	37	9	68427863	68427863	+	RNA	SNP	T	T	C	rs144877320	bycluster	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	.	.	.	.	AGTCATTTGCAGT		244	14	0.06	272	5	0.0183823529				5	1	0.20			
FAM47C	442444	broad.mit.edu	37	X	37028094	37028094	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	FAM47C	NM_001013736	exon1	c.A1611G	p.A537A	CCAGGCACCTCCT		72	5	0.07	64	0	0		267		1	0	0.00			
PRRG1	5638	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	37312624	37312624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	PRRG1	NM_001173490	exon4	c.A407G	p.D136G	CACCAGATGAAGT		120	30	0.25	164	3	0.0182926829		42		5	1	0.20			
CASK	8573	broad.mit.edu	37	X	41390360	41390360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	CASK	NM_003688	exon25	c.A2405G	p.E802G	CCGTACTCCAAGT		81	3	0.04	73	0	0		93		66	0	0.00			
SLC7A3	84889	hgsc.bcm.edu	37	X	70149798	70149798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_032803	exon2	c.G50A	p.R17H	AGTGTACGTCTGC		98	4	0.04	129	0	0				13	0	0.00			
HDAC8	55869	mdanderson.org	37	X	71571681	71571681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_018486	exon10	c.C1013A	p.T338K	TATGCTGTGAAAA		49	3	0.06	49	0	0				10	0	0.00			
.	84443	broad.mit.edu	37	X	106846478	106846480	+	In_Frame_Del	DEL	CAG	CAG	-	rs201186557	alternate_allele	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	CAG	CAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	.	.	.	.	CAACAACAGCAGC		132	11	0.08	141	0	0				1	0	0.00			
GRIA3	2892	bcgsc.ca;mdanderson.org	37	X	122599615	122599615	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	GRIA3	NM_000828	exon14	c.C2415T	p.C805C	AGAGTGCGGCAGC		109	5	0.05	121	0	0		386		0	0				
