Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
TAS1R3	83756	mdanderson.org	37	1	1267771	1267771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_152228	exon3	c.G860T	p.S287I	ACTACAGCATCAG		48	3	0.06	46	0	0				0	0				
.	0	bcgsc.ca	37	1	79215807	79215807	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	GCATGACAGGCGA		83	5	0.06	50	0	0				0	0				
NOTCH2	4853	broad.mit.edu	37	1	120458445	120458445	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	NOTCH2	NM_024408	exon34	c.C6900A	p.P2300P	GGGCAAGGGCTCC		75	3	0.04	36	0	0		348		54	0	0.00			
CCDC3	83643	mdanderson.org	37	10	13043391	13043391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_031455	exon1	c.C180A	p.N60K	CAGGTGGTTGTAG		48	3	0.06	42	0	0				10	0	0.00			
PDE3B	5140	mdanderson.org	37	11	14666437	14666437	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_000922	exon1	c.G816T	p.A272A	GGAAGCGCCTCTT		44	3	0.07	84	0	0				18	1	0.06			
MYBPC3	4607	mdanderson.org	37	11	47372906	47372906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_000256	exon2	c.C176T	p.T59I	CCCTCTGTGGCCA		52	3	0.06	69	0	0				0	0				
LOC440040	0	broad.mit.edu	37	11	49831251	49831258	+	RNA	DEL	TTATTTAT	TTATTTAT	-	rs71918870	alternate_allele	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	TTATTTAT	TTATTTAT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	TCTTTCTTATTTA		15	5	0.33	9	0	0				0	0				
LRP5	4041	broad.mit.edu	37	11	68207377	68207377	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	LRP5	NM_002335	exon21	c.A4481C	p.Y1494S	CGCTGTACCCGCC		11	5	0.45	30	14	0.4666666667		136		26	1	0.04			
SHANK2	22941	ucsc.edu	37	11	70653168	70653168	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	SHANK2	.	.	.	.	TGGCTTGACAGCG		66	11	0.17	120	6	0.05		340		0	0				
TENM4	26011	mdanderson.org	37	11	78565254	78565254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001098816	exon12	c.C1576A	p.H526N	TCTCATGGCTGGA		19	2	0.11	37	0	0				8	0	0.00			
GRM5	2915	mdanderson.org	37	11	88300321	88300321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	GRM5_ENST00000418177,NS,carcinoma,0,2	GRM5_ENST00000418177	NM_000842	exon8	c.C2530A	p.R844S	GCATGCGCACCAC		37	3	0.08	80	0	0		0	2	0	0				
FAM60A	58516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	31440707	31440707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_021238	exon6	c.C367T	p.H123Y	TACTGTGAGCATC		101	14	0.14	47	0	0				670	114	0.17			
ATF7	11016	mdanderson.org	37	12	53918523	53918523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_006856	exon10	c.C950A	p.P317H	GTACTAGGGGTGG		22	2	0.09	27	0	0				25	0	0.00			
CCDC64	92558	mdanderson.org	37	12	120518734	120518734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_207311	exon7	c.G1352T	p.R451I	AGGAGAGAGACCG		45	4	0.09	30	0	0				29	0	0.00			
RPLP0	6175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120637138	120637138	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_053275	exon3	c.C205T	p.L69L	TTTCCAGGTGCCC		101	20	0.20	86	0	0				42352	12145	0.29			
SACS	26278	broad.mit.edu	37	13	23907043	23907043	+	Missense_Mutation	SNP	G	G	A	rs115155117	bycluster;by1000genomes	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	SACS	NM_014363	exon10	c.C10972T	p.R3658W	GGGCCCGCTCAGG		68	3	0.04	56	0	0		871		19	0	0.00			
.	374491	bcgsc.ca	37	13	25144704	25144704	+	RNA	SNP	T	T	C	rs9551120	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	TAGATGTGTTTAA		42	25	0.60	58	6	0.1034482759				0	0				
.	374491	bcgsc.ca	37	13	25144710	25144710	+	RNA	SNP	A	A	G	rs3742170	bycluster;byhapmap	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	TGTTTAACACAGC		44	27	0.61	59	7	0.1186440678				0	0				
.	374491	bcgsc.ca	37	13	25144712	25144712	+	RNA	SNP	A	A	C	rs3742169	bycluster;byhapmap;by1000genomes	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	TTTAACACAGCCC		48	29	0.60	63	8	0.126984127				0	0				
SLC25A15	10166	mdanderson.org	37	13	41373332	41373332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_014252	exon3	c.G195T	p.K65N	CTACAAGGGTACC		142	5	0.04	172	0	0				34	0	0.00			
ZC3H13	23091	mdanderson.org	37	13	46562935	46562935	+	Missense_Mutation	SNP	A	A	T	rs1134071	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_015070	exon9	c.T1242A	p.H414Q	CCTTTCATGGCGT		62	2	0.03	85	0	0				82	0	0.00			
TRIM13	10206	hgsc.bcm.edu	37	13	50588497	50588500	+	RNA	DEL	ACAC	ACAC	-	rs10676627	alternate_allele	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	ACAC	ACAC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	TRIM13	.	.	.	.	ATATATACACACA		27	16	0.59	23	0	0		30		1	0	0.00			
ATP5S	27109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50789405	50789405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_015684	exon3	c.C329T	p.S110F	CCGACTCTTGTAT		132	30	0.23	122	0	0				59	22	0.37			
PLEKHG3	26030	mdanderson.org	37	14	65209934	65209934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_015549	exon15	c.C3005T	p.A1002V	AGTATGCCTCCCG		27	3	0.11	36	0	0				16	0	0.00			
ISM2	145501	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	77950769	77950769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	ISM2,colon,carcinoma,+1,1	ISM2	NM_199296	exon3	c.C524T	p.A175V	GGCGTGGCATTCC		129	6	0.05	105	0	0		68	1	9	0	0.00			
FAM181A	90050	mdanderson.org	37	14	94395420	94395420	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_138344	exon3	c.G975T	p.G325G	CCTGGGGCAGAAG		35	3	0.09	33	0	0				0	0				
MIR655	0	broad.mit.edu	37	14	101514904	101514905	+	RNA	DEL	GT	GT	-	rs374284110	alternate_allele	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	GT	GT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	TCTGGGGTGTGTG		35	9	0.26	31	0	0				0	0				
EID1	23741	mdanderson.org	37	15	49170510	49170510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_014335	exon1	c.G137A	p.R46H	CCTCCCGCAGCGG		39	3	0.08	52	0	0				253	0	0.00			
MESP2	145873	hgsc.bcm.edu	37	15	90320132	90320132	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	MESP2,NS,carcinoma,-2,1	MESP2	NM_001039958	exon1	c.C544G	p.Q182E	CAGGGGCAAGGGC		32	2	0.06	15	0	0		-2	1	0	0				
MESP2	145873	broad.mit.edu;mdanderson.org	37	15	90320173	90320173	+	Silent	SNP	A	A	G	rs113636330		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	MESP2	NM_001039958	exon1	c.A585G	p.G195G	GCAAGGACAGGGG		38	2	0.05	21	0	0		20		1	0	0.00			
PRSS41	360226	mdanderson.org	37	16	2849000	2849000	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001135086	exon2	c.C171T	p.G57G	GGCGGGCGGAGTG		16	3	0.19	13	0	0				1	0	0.00			
NLRC3	197358	broad.mit.edu	37	16	3601981	3601982	+	RNA	INS	-	-	CACC	rs113120190	bycluster;by1000genomes	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	NLRC3	.	.	.	.	CTTCATTCATCCA		17	8	0.47	11	0	0		103		0	0				
SEC14L5	9717	mdanderson.org	37	16	5041986	5041986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_014692	exon6	c.C622T	p.P208S	CACGGGCCCCGTA		31	3	0.10	16	0	0				3	0	0.00			
UBFD1	56061	broad.mit.edu	37	16	23568933	23568933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	UBFD1	.	.	.	.	GGCGGGTCTCCAT		42	15	0.36	21	7	0.3333333333		16		2	0	0.00			
ARHGAP17	55114	ucsc.edu	37	16	24965936	24965936	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	ARHGAP17	NM_001006634	exon10	c.C840T	p.G280G	CTTCATGCCTGTC		41	4	0.10	43	0	0		138		68	0	0.00			
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29998788	29998788	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	TAOK2_ENST00000308893,colon,carcinoma,+1,1	TAOK2_ENST00000308893	NM_016151	exon16	c.G3195A	p.A1065A	GGCAGCGGGGGGC		89	23	0.26	82	0	0		1	1	80	27	0.34			
PHKB	5257	mdanderson.org	37	16	47622988	47622988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_000293	exon10	c.G1043T	p.C348F	ACAGATGCTACTA		64	4	0.06	62	0	0				60	0	0.00			
LOC283922	0	broad.mit.edu	37	16	74366343	74366343	+	RNA	SNP	T	T	C	rs112075144	bycluster;byfrequency	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	CCTCAGTTCCCAA		36	9	0.25	24	1	0.0416666667				5	0	0.00			
POLR2A	5430	broad.mit.edu	37	17	7407047	7407047	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	POLR2A	NM_000937	exon19	c.G3177T	p.R1059R	GTTTCGGCTCAGT		257	4	0.02	209	0	0		157		196	0	0.00			
GUCY2D	3000	mdanderson.org	37	17	7909965	7909965	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_000180	exon4	c.G1311T	p.P437P	CTTCCCGCGTGGG		51	3	0.06	56	0	0				0	0				
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35445916	35445916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	ACACA_ENST00000353139,bladder,carcinoma,+2,2	ACACA_ENST00000353139	NM_198834	exon55	c.A6985C	p.I2329L	ATTTGATGTTTTC		302	83	0.27	273	0	0		2	2	232	87	0.38			
CDH19	28513	bcgsc.ca;mdanderson.org	37	18	64172301	64172301	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	CDH19	NM_021153	exon12	c.C2067T	p.G689G	GTCGGGGCCAACT		89	5	0.06	99	0	0		141		1	0	0.00			
ACTL9	284382	mdanderson.org	37	19	8808404	8808404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	ACTL9,NS,carcinoma,0,2	ACTL9	NM_178525	exon1	c.C648A	p.H216Q	CGTGGCGTGGAGC		15	2	0.13	13	0	0		0	2	0	0				
ZNF433	163059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12126012	12126012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001080411	exon4	c.C1670T	p.T557I	TCTCCAGTGTGAG		171	55	0.32	137	0	0				21	9	0.43			
ZNF99	7652	hgsc.bcm.edu	37	19	22941279	22941279	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	ZNF99,NS,carcinoma,0,1	ZNF99	NM_001080409	exon4	c.G1432C	p.E478Q	GTTTCTCTCCAGT		62	3	0.05	50	1	0.02		0	1	13	0	0.00			
RHPN2	85415	mdanderson.org	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	RHPN2,face,carcinoma,0,2	RHPN2	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC		25	3	0.12	19	0	0		0	2	26	0	0.00			
WBP1	23559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74685732	74685732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_012477	exon1	c.G3A	p.M1I	AGGTATGGCTCGG		152	44	0.29	111	0	0				134	29	0.22			
DBI	1622	mdanderson.org	37	2	120129839	120129839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001178017	exon4	c.C392T	p.A131V	AAGATGCCATGAA		42	3	0.07	38	0	0				911	0	0.00			
NR4A2	4929	mdanderson.org	37	2	157183293	157183293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_006186	exon6	c.C1298A	p.A433D	TGGTCGGCTTTGG		47	3	0.06	58	0	0				9	0	0.00			
DGKD	8527	mdanderson.org	37	2	234370999	234370999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_152879	exon25	c.G2987T	p.R996L	GTATCCGAGAAAT		47	3	0.06	37	0	0				140	0	0.00			
ACTL10	170487	mdanderson.org	37	20	32255441	32255441	+	Silent	SNP	C	C	T	rs147746551	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001024675	exon1	c.C138T	p.N46N	ACTGAACGTGGCA		46	3	0.07	56	0	0				0	0				
IFNAR2	3455	broad.mit.edu	37	21	34635615	34635615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	IFNAR2	NM_207585	exon9	c.T1358C	p.L453P	CTCATCTGGAAGA		146	4	0.03	79	0	0		44		35	0	0.00			
CARD10	29775	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37903924	37903924	+	Missense_Mutation	SNP	C	C	T	rs150236189	byfrequency	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	CARD10	NM_014550	exon6	c.G1103A	p.R368H	AGCGTGCGGTGCT		132	63	0.48	115	1	0.0086956522		55		77	50	0.65			
ADSL	158	broad.mit.edu	37	22	40757555	40757555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	ADSL	NM_001123378	exon9	c.G926A	p.R309H	TTGCCCGCCACCT		93	4	0.04	64	0	0		98		974	0	0.00			
RHOA	387	ucsc.edu	37	3	49399927	49399927	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	RHOA	NM_001664	exon5	c.408+2C>A	.	GATCATGCCTGCT		88	1	0.01	88	0	0		46		43	4	0.09			
.	0	broad.mit.edu	37	3	59087570	59087570	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	AATGCGAAAAAGA		6	2	0.33	7	0	0				0	0				
ANAPC10	10393	broad.mit.edu	37	4	145916698	145916698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	ANAPC10	NM_001256709	exon7	c.A418G	p.K140E	GCTTCTTATGATT		112	3	0.03	171	0	0		12		123	0	0.00			
C5orf56	441108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131811504	131811504	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	GGACACCGCGTCT		51	19	0.37	51	0	0				4	0	0.00			
HK3	3101	mdanderson.org	37	5	176308126	176308126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	HK3,NS,carcinoma,+1,1	HK3	NM_002115	exon19	c.C2720T	p.A907V	AGGGCCGCACCTT		38	3	0.08	66	0	0		1	1	1	0	0.00			
OR2Y1	134083	bcgsc.ca	37	5	180166235	180166235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	OR2Y1	NM_001001657	exon1	c.T824C	p.L275P	TAAAAAAGGGCAA		48	4	0.08	71	0	0		49		0	0				
UFL1	23376	broad.mit.edu	37	6	96997435	96997435	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_015323	exon14	c.A1668G	p.K556K	TGAAAAAGGGATG		109	3	0.03	112	0	0				30	0	0.00			
QKI	9444	mdanderson.org	37	6	163983060	163983060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_206855	exon5	c.C593T	p.A198V	AGCTTGCGATTCT		46	3	0.07	54	0	0				180	0	0.00			
INTS1	26173	ucsc.edu	37	7	1519274	1519274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	INTS1	NM_001080453	exon31	c.G4121A	p.R1374H	ACGGGGCGGGGAC		25	4	0.16	20	0	0		145		53	0	0.00			
SNX8	29886	mdanderson.org	37	7	2304059	2304059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	SNX8,NS,carcinoma,+1,1	SNX8	NM_013321	exon6	c.C656T	p.A219V	CTGATGGCAAACT		31	3	0.10	28	0	0		1	1	336	0	0.00			
TNRC18	84629	mdanderson.org	37	7	5364801	5364801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001080495	exon20	c.G6226A	p.A2076T	GAGGAGCCCTGGC		39	3	0.08	28	0	0				49	0	0.00			
CCT6P1	0	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	TCTTGCGCAGAAT		129	3	0.02	111	3	0.027027027				25	0	0.00			
KLRG2	346689	mdanderson.org	37	7	139168282	139168282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_198508	exon1	c.C107A	p.A36E	ACCTTCGCGGGCA		30	3	0.10	22	0	0				288	0	0.00			
MLL3	58508	mdanderson.org	37	7	151945313	151945313	+	Silent	SNP	A	A	G	rs372718879	bycluster	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_170606	exon14	c.T2206C	p.L736L	CCATCAATCCAGT		166	14	0.08	111	1	0.009009009				29	0	0.00			
FGF20	26281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	16853180	16853180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	FGF20,leg,malignant_melanoma,0,1	FGF20	NM_019851	exon2	c.G374A	p.G125E	AGTTCTCCTTTGT		143	35	0.24	82	0	0		0	1	0	0				
DUSP4	1846	mdanderson.org	37	8	29207485	29207485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001394	exon1	c.C311T	p.A104V	ATGACCGCCGAGT		39	3	0.08	22	0	0				0	0				
DOCK8	81704	mdanderson.org	37	9	396818	396818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_203447	exon25	c.G3004T	p.D1002Y	AACATGGACAAAC		74	4	0.05	114	0	0				14	0	0.00			
.	441420	bcgsc.ca	37	9	45376206	45376206	+	RNA	SNP	A	A	C	rs372171742		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	GGACCAAACCAAC		46	8	0.17	40	2	0.05				2	0	0.00			
LINC00475	0	broad.mit.edu	37	9	94907350	94907351	+	RNA	INS	-	-	T	rs112532694	bycluster;by1000genomes	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	TTTCTTCTTTTTT		8	6	0.75	5	0	0				0	0				
WNK2	65268	bcgsc.ca	37	9	95947703	95947703	+	Missense_Mutation	SNP	G	G	T	rs369083880	alternate_allele	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	WNK2	NM_006648	exon1	c.G492T	p.E164D	GCCTGAGCCCGGG		44	4	0.09	38	0	0		277		23	0	0.00			
VCX3B	425054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	8434340	8434340	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001001888	exon3	c.G657A	p.Q219Q	GAGCCAGGTGGAG		434	179	0.41	289	1	0.0034602076				62	7	0.11			
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA		341	8	0.02	203	1	0.0049261084		28		109	0	0.00			
SPIN2B	474343	broad.mit.edu	37	X	57146615	57146615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	SPIN2B	NM_001006683	exon2	c.A448G	p.M150V	AGACCATCCCCCT		541	7	0.01	349	1	0.0028653295		11		13	0	0.00			
HS6ST2	90161	mdanderson.org	37	X	132092425	132092425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001077188	exon2	c.A206G	p.D69G	GGCTTGTCCAGGA		16	3	0.19	13	0	0				0	0				
CYP21A2	1589	mdanderson.org	37	6	32008888	32008888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	GGGGCCCACAGCC		21	2	0.10	11	0	0				0	0				
