Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
LRRC47	57470	mdanderson.org	37	1	3703430	3703430	+	Missense_Mutation	SNP	G	G	T	rs151150139	bycluster;byfrequency;alternate_allele	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_020710	exon2	c.C1060A	p.R354S	GGAAGCGCTTGAG		50	3	0.06	70	0	0				124	0	0.00			
CROCCP3	0	broad.mit.edu	37	1	16812950	16812950	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	CAGGTCACTTTGC		65	8	0.12	58	1	0.0172413793				3	0	0.00			
MUL1	79594	broad.mit.edu	37	1	20834437	20834437	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	MUL1	NM_024544	exon1	c.C81A	p.S27S	GTACACGGAGTAC		89	4	0.04	136	2	0.0147058824		34		7	0	0.00			
FOXD3	27022	hgsc.bcm.edu	37	1	63789225	63789225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_012183	exon1	c.G496A	p.G166S	CTGAGCGGCATCT		94	4	0.04	113	0	0				0	0				
MTF2	22823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	93599295	93599295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_007358	exon12	c.A1196G	p.K399R	GAAAGAAAAAATC		36	9	0.25	43	0	0				54	19	0.35			
SEC22B	9554	broad.mit.edu	37	1	145109975	145109976	+	RNA	INS	-	-	C	rs11458983	bycluster	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	AACTTTGCTAAAG		9	3	0.33	11	0	0				0	0				
S100A7	6278	broad.mit.edu	37	1	153430403	153430403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	S100A7	NM_002963	exon3	c.A185G	p.K62R	TTGTCCTTTTTCT		222	5	0.02	249	0	0		23		11	0	0.00			
OPN3	23596	mdanderson.org	37	1	241803223	241803223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_014322	exon1	c.G334A	p.V112M	AGCCCACGGTGTC		51	3	0.06	66	0	0				4	0	0.00			
PIP4K2A	5305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	22830852	22830852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_005028	exon8	c.G917A	p.G306D	TGGGTGCCATCGC		126	6	0.05	156	0	0				45	0	0.00			
.	653259	bcgsc.ca	37	10	47727808	47727809	+	Splice_Site	INS	-	-	C	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	ACAGTTAACTCAT		25	3	0.12	89	0	0				0	0				
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73768085	73768085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_004273	exon3	c.G1296A	p.M432I	CAGCATGCCCTTC		68	18	0.26	72	0	0				5	2	0.40			
FAM24B-CUZD1	0	hgsc.bcm.edu	37	10	124596904	124596904	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	AGAATTGGGCAGC		100	19	0.19	83	0	0				0	0				
DNHD1	144132	hgsc.bcm.edu;mdanderson.org	37	11	6569159	6569159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	DNHD1,colon,carcinoma,0,2	DNHD1	NM_144666	exon22	c.G6794T	p.R2265L	TAAACCGGTCCCA		60	3	0.05	66	0	0		0	2	15	0	0.00			
PRDM11	56981	mdanderson.org	37	11	45203849	45203849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001256695	exon3	c.G172T	p.G58W	CTGAAGGGGAAGC		44	3	0.07	106	0	0				0	0				
RCOR2	283248	bcgsc.ca	37	11	63682723	63682723	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	RCOR2	NM_173587	exon3	c.C192A	p.P64P	GCGTGCGGGGCTC		47	4	0.09	91	0	0		43		52	0	0.00			
TYR	7299	mdanderson.org	37	11	88961033	88961033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_000372	exon3	c.G1079T	p.S360I	CTCAAAGCAGCAT		42	3	0.07	100	0	0				0	0				
RNF26	79102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119206597	119206597	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_032015	exon1	c.C765G	p.T255T	GGCTACCCAGGCA		31	8	0.26	45	0	0				55	18	0.33			
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123489463	123489463	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_020716	exon18	c.C1964G	p.T655S	AATACACCACGCA		72	21	0.29	137	0	0				4	0	0.00			
RBP5	0	broad.mit.edu	37	12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		13	4	0.31	6	0	0		20		5	0	0.00			
FAM186A	121006	broad.mit.edu	37	12	50747002	50747002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	FAM186A	NM_001145475	exon4	c.G3613A	p.V1205I	GAGAGACCCTCAG		90	8	0.09	120	1	0.0083333333		181		0	0				
NACA	4666	broad.mit.edu	37	12	57111378	57111378	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	NACA_ENST00000454682,NS,malignant_melanoma,0,1	NACA	.	.	.	.	AGCTGGAGGAGTG		116	11	0.09	141	3	0.0212765957		131	1	0	0				
NUP107	57122	mdanderson.org	37	12	69135740	69135740	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_020401	exon27	c.G2650T	p.E884X	TCCTCTGAGCGCC		81	5	0.06	108	0	0				332	1	0.00			
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	72028578	72028578	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_144982	exon11	c.A2266T	p.K756X	CAGATTTTGGAGG		48	11	0.23	59	0	0				0	0				
SETD3	84193	mdanderson.org	37	14	99876548	99876548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_199123	exon9	c.C854A	p.P285Q	TCTTCTGGTGTCT		53	3	0.06	73	0	0				0	0				
AHNAK2	113146	broad.mit.edu	37	14	105414109	105414109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	AHNAK2	NM_138420	exon7	c.C7679T	p.A2560V	AGGCCGGCTCCCT		175	6	0.03	185	0	0		719		0	0				
MAN2C1	4123	broad.mit.edu;mdanderson.org	37	15	75654243	75654243	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	MAN2C1	NM_001256494	exon9	c.C1054T	p.Q352X	GGCCCTGCAAAAA		82	4	0.05	75	0	0		76		13	0	0.00			
ABCA3	21	mdanderson.org	37	16	2338251	2338251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001089	exon21	c.C2780A	p.A927E	TGTGCCGCCACCA		38	3	0.08	32	0	0				5	0	0.00			
ZNF764	92595	mdanderson.org	37	16	30566959	30566959	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_033410	exon3	c.C783A	p.C261X	GTCGGCGCAGCCA		17	2	0.12	17	0	0				7	0	0.00			
ZNF629	23361	mdanderson.org	37	16	30794398	30794398	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001080417	exon3	c.C1251A	p.L417L	GTTGATGAGGTTG		43	3	0.07	56	0	0				0	0				
ZNF423	23090	mdanderson.org	37	16	49671203	49671203	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_015069	exon4	c.C1860A	p.L620L	TGCTGAGAGCCGC		68	5	0.07	113	0	0				5	0	0.00			
COX4I1	1327	broad.mit.edu	37	16	85838605	85838605	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	COX4I1	NM_001861	exon3	c.T136C	p.L46L	CACCCCTTGCCGG		93	15	0.16	123	17	0.1382113821		20		2211	66	0.03			
ALOX12B	242	mdanderson.org	37	17	7979514	7979514	+	Missense_Mutation	SNP	G	G	T	rs141010860	alternate_allele	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001139	exon11	c.C1511A	p.A504E	CACACCGCCAAGC		40	3	0.08	67	0	0				1	0	0.00			
RAI1	10743	mdanderson.org	37	17	17701342	17701342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_030665	exon3	c.G5080T	p.A1694S	AACCCGGCCAACT		67	5	0.07	102	0	0				36	0	0.00			
LRRC37BP1	0	broad.mit.edu	37	17	28935711	28935713	+	RNA	DEL	GTA	GTA	-	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	GTA	GTA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	ATACATGTAGTAT		12	5	0.42	7	0	0				0	0				
GAS2L2	246176	broad.mit.edu	37	17	34077157	34077157	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	GAS2L2,right_upper_lobe,carcinoma,0,2	GAS2L2	NM_139285	exon2	c.A566C	p.D189A	GAGGGGTCGGGCG		80	30	0.38	83	29	0.3493975904		94	2	0	0				
SMARCE1	6605	mdanderson.org	37	17	38798746	38798746	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_003079	exon4	c.C117A	p.Y39X	CAGCCTGTAGTTG		46	3	0.07	73	0	0				128	0	0.00			
KRTAP2-4	85294	hgsc.bcm.edu	37	17	39221816	39221816	+	Nonsense_Mutation	SNP	C	C	T	rs200049107		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	KRTAP2-4,trunk,malignant_melanoma,0,1	KRTAP2-4	NM_033184	exon1	c.G282A	p.W94X	GGTGGCCCAGCAG		15	3	0.20	16	2	0.125		0	1	0	0				
SP6	80320	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45924781	45924781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	SP6	NM_001258248	exon2	c.G1015A	p.A339T	CCTTGGCGCCCTC		120	8	0.07	135	0	0		26		2	0	0.00			
CARD14	79092	mdanderson.org	37	17	78164655	78164655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_024110	exon7	c.C1046T	p.A349V	TGAATGCGCTGCA		35	3	0.09	37	0	0				0	0				
ENDOV	284131	ucsc.edu	37	17	78409975	78409975	+	Missense_Mutation	SNP	A	A	G	rs12939348	bycluster;byfrequency;by2hit2allele	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	ENDOV	.	.	.	.	CGTCTCATTCCTG		39	4	0.10	50	2	0.04		26		19	1	0.05			
CCDC57	284001	mdanderson.org	37	17	80086422	80086422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_198082	exon15	c.C2293A	p.Q765K	GGGGCTGGTGCTT		48	3	0.06	81	0	0				12	0	0.00			
MIER2	54531	broad.mit.edu	37	19	327235	327235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	MIER2	NM_017550	exon5	c.C391T	p.L131F	CTGAAAGCAAATC		92	15	0.16	87	6	0.0689655172		51		90	0	0.00			
S1PR2	9294	mdanderson.org	37	19	10334950	10334950	+	Missense_Mutation	SNP	C	C	T	rs141230424	bycluster;by1000genomes	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_004230	exon2	c.G632A	p.R211H	TAGATGCGCACGT		43	3	0.07	52	0	0	0			1	0	0.00			
SMARCA4	6597	ucsc.edu	37	19	11123647	11123647	+	Missense_Mutation	SNP	T	T	G	rs201128299	bycluster;byfrequency	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	SMARCA4_ENST00000358026,NS,carcinoma,-1,2	SMARCA4	NM_003072	exon16	c.T2297G	p.V766G	GGCTGGTGTCCCT		159	14	0.09	150	10	0.0666666667		502	2	94	21	0.22			
NACC1	112939	mdanderson.org	37	19	13246749	13246749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_052876	exon2	c.C728T	p.A243V	AGCCAGCCGGTGG		22	2	0.09	42	0	0				18	0	0.00			
EIF5B	9669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99992927	99992927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_015904	exon10	c.G1670A	p.S557N	GAGAAAGTGAAGG		120	21	0.18	100	0	0				228	55	0.24			
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242350476	242350476	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_014808	exon6	c.G439C	p.D147H	AAGAGAGACCTGC		52	11	0.21	78	0	0				2	1	0.50			
SIRPG	55423	broad.mit.edu	37	20	1615980	1615980	+	Silent	SNP	C	C	T	rs147655438		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	SIRPG,NS,carcinoma,0,1	SIRPG	NM_018556	exon4	c.G1014A	p.A338A	GCTGACCGCCAGC		99	4	0.04	155	0	0		61	1	14	0	0.00			
FOXA2	3170	broad.mit.edu	37	20	22562677	22562677	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	FOXA2	NM_021784	exon2	c.C1203G	p.H401Q	GGGTTGGTGGTGG		166	3	0.02	223	1	0.0044843049		48		0	0				
RALGAPB	57148	broad.mit.edu	37	20	37195815	37195815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	RALGAPB	NM_020336	exon26	c.G3894T	p.Q1298H	GAAACAGCCATCC		99	3	0.03	145	0	0		134		43	0	0.00			
MIR3648	0	broad.mit.edu	37	21	9825838	9825839	+	RNA	INS	-	-	GCG	rs372061766	bycluster	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	CGCGACTGCGGCG		11	5	0.45	6	0	0				0	0				
ADAMTS5	11096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	28302337	28302337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	ADAMTS5,colon,carcinoma,+1,2	ADAMTS5	NM_007038	exon7	c.G2093C	p.C698S	CGGACGCAGACGG		135	48	0.36	157	0	0		1	2	11	4	0.36			
HLCS	3141	hgsc.bcm.edu	37	21	38269383	38269383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_000411	exon7	c.G1228C	p.E410Q	CTCCCTCGGAGTC		100	4	0.04	102	0	0				16	0	0.00			
KRTAP10-2	386679	mdanderson.org	37	21	45971147	45971147	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_198693	exon1	c.C195T	p.S65S	GCAGGCGCTGGGC		39	3	0.08	36	0	0				0	0				
POM121L9P	0	broad.mit.edu	37	22	24659809	24659809	+	RNA	SNP	G	G	A	rs376621154		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	ATCTGCGCACCCG		18	9	0.50	15	0	0				0	0				
POM121L9P	0	broad.mit.edu	37	22	24659813	24659813	+	RNA	SNP	C	C	T	rs368832816		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	GCGCACCCGGAGG		18	9	0.50	13	0	0				0	0				
PRR14L	253143	broad.mit.edu	37	22	32109902	32109902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	PRR14L	NM_173566	exon4	c.C3923A	p.A1308D	TTGCAAGCATTCT		165	4	0.02	141	0	0		198		0	0				
C22orf34	0	broad.mit.edu	37	22	50014178	50014178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	C22orf34	.	.	.	.	GCAATCGCCTCCA		43	4	0.09	88	0	0		2		1	0	0.00			
DCLK3	85443	mdanderson.org	37	3	36779310	36779310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_033403	exon2	c.C841A	p.Q281K	CCGCCTGGTGCTC		46	3	0.07	73	0	0				5	0	0.00			
GPR87	53836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151012124	151012124	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	GPR87,colon,carcinoma,+1,1	GPR87	NM_023915	exon3	c.G910C	p.A304P	TACACGCAGACAA		133	40	0.30	246	2	0.0081300813		1	1	0	0				
WFS1	7466	mdanderson.org	37	4	6293696	6293696	+	Silent	SNP	C	C	T	rs1801213	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	WFS1,NS,carcinoma,0,1	WFS1	NM_006005	exon6	c.C684T	p.R228R	GAGGCGCATGCTG		120	3	0.03	199	0	0		0	1	13	0	0.00			
KLB	152831	mdanderson.org	37	4	39448478	39448478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_175737	exon4	c.C2132T	p.A711V	ACGGGGCGGCGCA		16	2	0.13	22	0	0				2	0	0.00			
LRRC66	339977	broad.mit.edu	37	4	52861480	52861480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	LRRC66	NM_001024611	exon4	c.C1708T	p.R570C	CATAACGGCTTGA		263	4	0.02	136	1	0.0073529412		128		2	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55599340	55599340	+	Missense_Mutation	SNP	T	T	G	rs121913514	alternate_allele	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	KIT,NS,malignant_melanoma,+2,48	KIT	NM_000222	exon17	c.T2466G	p.N822K	TTCTAATTATGTG		131	102	0.78	95	0	0		2	48	62	52	0.84			
CAMK2D	817	mdanderson.org	37	4	114458562	114458562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_172115	exon7	c.C452T	p.A151V	ACAGCTGCTCCCT		51	3	0.06	96	1	0.0104166667				0	0				
PALLD	23022	broad.mit.edu	37	4	169632802	169632802	+	Silent	SNP	T	T	C	rs370282753		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	PALLD	NM_001166108	exon10	c.T1692C	p.P564P	TCCACCTCCCCCT		214	6	0.03	323	1	0.0030959752		179		2	0	0.00			
MIER3	166968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56219619	56219619	+	Missense_Mutation	SNP	C	C	G	rs375553373	alternate_allele	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_152622	exon12	c.G1091C	p.G364A	GTCCCACCCAAAG		172	54	0.31	265	0	0				4	1	0.25			
PRRC1	133619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	126869374	126869374	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_130809	exon6	c.G817C	p.V273L	GCTGCTGTCCGAG		103	22	0.21	143	0	0				16	3	0.19			
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176638277	176638277	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_022455	exon5	c.A2877T	p.G959G	TTCAGGAGGCTCC		168	50	0.30	226	0	0				1	1	1.00			
MUC21	394263	mdanderson.org	37	6	30954594	30954594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001010909	exon2	c.G642C	p.E214D	CTCTGAGTCCAGA		45	3	0.07	65	0	0				18	0	0.00			
TNXB	7148	broad.mit.edu	37	6	32012870	32012870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	TNXB	NM_019105	exon32	c.C10834A	p.L3612M	GCTCCAGGCCTGA		301	5	0.02	297	1	0.0033670034		553		4	0	0.00			
RGL2	5863	mdanderson.org	37	6	33263293	33263293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	RGL2,NS,carcinoma,0,1	RGL2	NM_004761	exon7	c.G1012T	p.V338L	CTGCCACGCGGAT		50	3	0.06	60	0	0		0	1	16	0	0.00			
TOMM6	100188893	mdanderson.org	37	6	41756999	41756999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001134493	exon2	c.C158T	p.A53V	TCTTTGCTGCGGG		74	4	0.05	72	0	0				2481	2	0.00			
GRM1	2911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146720361	146720361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	GRM1,leg,malignant_melanoma,-1,1	GRM1	NM_000838	exon8	c.C2186G	p.P729R	TGGAACCCCCTAT		167	22	0.13	221	0	0		-1	1	0	0				
CCT6P1	0	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	TCTTGCGCAGAAT		122	5	0.04	122	1	0.0081967213				10	0	0.00			
GATAD1	57798	mdanderson.org	37	7	92077209	92077209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_021167	exon1	c.G166A	p.G56S	GGCAGCGGCGGCG		23	3	0.13	20	0	0				0	0				
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94042436	94042436	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_000089	exon26	c.T1545C	p.L515L	TGGTCTTGCTGGT		238	53	0.22	239	0	0				91	4	0.04			
ABCF2	10061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150921079	150921079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_005692	exon4	c.G489A	p.M163I	GACTTCCATCACA		94	14	0.15	101	0	0				80	25	0.31			
LEPROTL1	23484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	29963269	29963269	+	Missense_Mutation	SNP	G	G	T	rs371805932		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_015344	exon4	c.G287T	p.W96L	TTGAGTGGGGAGC		88	9	0.10	89	0	0				140	27	0.19			
BAI1	575	mdanderson.org	37	8	143560839	143560839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001702	exon7	c.C1717T	p.R573W	ACCCAGCGGTGTC		24	2	0.08	34	0	0				0	0				
OPLAH	26873	hgsc.bcm.edu	37	8	145111362	145111362	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_017570	exon14	c.C1909A	p.R637R	TGCCCCGCACTCG		86	4	0.05	92	0	0				5	0	0.00			
GLIS3	169792	hgsc.bcm.edu	37	9	3829449	3829449	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	GLIS3_ENST00000381971,NS,carcinoma,0,2	GLIS3_ENST00000381971	NM_001042413	exon10	c.C2517A	p.P839P	GGAATCGGGGTAG		86	4	0.05	131	0	0		0	2	0	0				
PIGO	84720	mdanderson.org	37	9	35091711	35091711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	PIGO,face,carcinoma,+1,1	PIGO	NM_032634	exon7	c.G2173A	p.A725T	CATCTGCCCCCGA		24	3	0.13	22	0	0		1	1	22	0	0.00			
COL15A1	1306	mdanderson.org	37	9	101807052	101807052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001855	exon26	c.G2679T	p.M893I	ACCAATGGTAAGT		46	3	0.07	89	0	0				10	0	0.00			
ASTN2	23245	mdanderson.org	37	9	119976991	119976991	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	ASTN2,right_upper_lobe,carcinoma,+2,2	ASTN2	NM_014010	exon3	c.C661G	p.L221V	ACACCAGCAGCAG		37	3	0.08	40	0	0		2	2	0	0				
WWC3	55841	mdanderson.org	37	X	10098006	10098006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_015691	exon18	c.G2443T	p.A815S	TGGCAAGCGGACT		40	3	0.08	53	0	0				0	0				
CPNE9	151835	mdanderson.org	37	3	9754683	9754683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	GACAGAGGTTGTG		39	3	0.08	68	0	0				9	0	0.00			
