Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PRDM2	7799	broad.mit.edu	37	1	14105106	14105106	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	PRDM2	NM_015866	exon8	c.G816A	p.E272E	GGAGGAGGAAGAG		193	5	0.03	148	0	0		147		7	0	0.00			
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34643423	34643423	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001134734	exon1	c.G33A	p.L11L	AGCCCTGGGTGGA		99	20	0.20	75	0	0				0	0				
ELAVL4	1996	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	50642764	50642765	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	ELAVL4_ENST00000357083,NS,carcinoma,0,2	ELAVL4	NM_001144775	exon3	c.304_305del	p.102_102del	CAGGACAGAGTTT		73	13	0.18	72	0	0		124		0	0				
MIR137HG	400765	hgsc.bcm.edu	37	1	98511786	98511786	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	.	.	.	.	TGCCGCCGCCGCC		88	17	0.19	98	0	0				0	0				
PRPF38B	55119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109241987	109241989	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	GCA	GCA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	PRPF38B	NM_018061	exon6	c.985_987del	p.329_329del	GCAGGCGCAGCAG		184	43	0.23	156	0	0		55		212	0	0.00			
FLG2	388698	bcgsc.ca	37	1	152327658	152327658	+	Silent	SNP	T	T	A	rs12724005	byhapmap	TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	FLG2	NM_001014342	exon3	c.A2604T	p.T868T	GCCAGATGTCTGT		47	9	0.19	86	1	0.011627907		431		0	0				
PLEKHA6	22874	mdanderson.org	37	1	204210552	204210552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_014935	exon17	c.C2360A	p.A787E	ACCACTGCTGATG		54	3	0.06	39	0	0				1	0	0.00			
.	0	bcgsc.ca	37	1	249066288	249066288	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	.	.	.	.	TTATCCATGTCAT		32	11	0.34	30	0	0				0	0				
PRKCQ	5588	bcgsc.ca;mdanderson.org	37	10	6470241	6470241	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	PRKCQ	NM_006257	exon18	c.C2049A	p.I683I	GCTGTTGATCAGT		72	5	0.07	76	0	0		113		7	0	0.00			
ALDH18A1	5832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97370021	97370021	+	Silent	SNP	G	G	A	rs147842812		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_002860	exon17	c.C2139T	p.H713H	GTCTACGTGCTGC		99	35	0.35	86	0	0	0			303	200	0.66			
MUC2	4583	mdanderson.org	37	11	1092969	1092969	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_002457	exon30	c.A4788T	p.P1596P	AACCCCAACACCC		38	3	0.08	36	0	0				0	0				
MUC5B	727897	broad.mit.edu	37	11	1268816	1268816	+	Missense_Mutation	SNP	C	C	T	rs71469871	bycluster	TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	MUC5B	NM_002458	exon31	c.C10706T	p.T3569M	TGACCACGGGCTG		224	4	0.02	245	1	0.0040816327		473		0	0				
TRIM3	10612	mdanderson.org	37	11	6477339	6477339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_006458	exon8	c.G1496A	p.R499H	ACGATGCGGCCGC		52	3	0.06	57	0	0				33	0	0.00			
CCDC73	493860	hgsc.bcm.edu	37	11	32635415	32635415	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001008391	exon16	c.A2449A	p.K817K	TTACCTGATTCTC		97	4	0.04	89	0	0				0	0				
PELI3	246330	broad.mit.edu	37	11	66241455	66241455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	PELI3	.	.	.	.	TGCCCATCCCCCT		40	3	0.08	25	0	0		36		3	0	0.00			
GPR152	390212	mdanderson.org	37	11	67219445	67219445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_206997	exon1	c.C751A	p.L251M	AGGGCAGCCTCAG		30	3	0.10	28	0	0				0	0				
ARHGEF17	9828	broad.mit.edu	37	11	73066656	73066656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	ARHGEF17	NM_014786	exon4	c.G3532T	p.A1178S	CGTGTGGCCAAGG		97	4	0.04	100	0	0		117		2	0	0.00			
WNT11	7481	mdanderson.org	37	11	75905775	75905775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_004626	exon3	c.G433T	p.G145C	GCTCACCTGGGAC		44	3	0.07	55	0	0				4	0	0.00			
C11orf82	220042	mdanderson.org	37	11	82639964	82639964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_145018	exon4	c.G259T	p.A87S	CTTACTGCCACTG		55	3	0.05	63	0	0				28	0	0.00			
SLC37A2	219855	mdanderson.org	37	11	124955359	124955359	+	Silent	SNP	C	C	T	rs144643816		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_198277	exon15	c.C1317T	p.T439T	CGGCACCGGCTCC		38	3	0.08	75	0	0	0			26	1	0.04			
RHNO1	83695	broad.mit.edu	37	12	2997087	2997087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001257098	exon3	c.A179T	p.D60V	CACCTGATTTTGA		164	17	0.10	97	5	0.0515463918				218	0	0.00			
DYRK4	8798	broad.mit.edu	37	12	4722809	4722809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	DYRK4,NS,carcinoma,0,1	DYRK4	NM_003845	exon13	c.G1453A	p.A485T	GTAGACGCTCCCA		267	5	0.02	132	0	0		75	1	235	0	0.00			
CELA1	1990	mdanderson.org	37	12	51723604	51723604	+	Missense_Mutation	SNP	C	C	G	rs201129231	bycluster	TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001971	exon7	c.G623C	p.G208A	AGGGGGCCCCCAG		37	4	0.11	40	0	0	0.001			1	0	0.00			
E2F7	144455	broad.mit.edu	37	12	77449827	77449827	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	E2F7	NM_203394	exon3	c.177delA	p.K59fs	AGTAAATTTTTTT		228	7	0.03	174	0	0		201		0	0				
RFX4	5992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	106995124	106995124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001206691	exon1	c.G70A	p.E24K	TCCACTGGTAATG		170	36	0.21	159	0	0				0	0				
FZD10	11211	broad.mit.edu	37	12	130647553	130647553	+	Missense_Mutation	SNP	C	C	A	rs200800452		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	FZD10,NS,carcinoma,0,2	FZD10	NM_007197	exon1	c.C66A	p.S22R	CATCAGCTCCATG		107	12	0.11	97	2	0.0206185567		95	2	14	1	0.07			
BASP1P1	646201	hgsc.bcm.edu	37	13	23471388	23471389	+	RNA	DNP	AG	AG	GA	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	.	.	.	.	AGAGAGAGGAGAG		57	4	0.07	50	0	0				0	0				
UNC79	57578	broad.mit.edu	37	14	94088894	94088894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	UNC79	NM_020818	exon30	c.A4784G	p.E1595G	AGGGGGAGAAGCC		124	4	0.03	100	2	0.02		366		7	0	0.00			
GOLGA8DP	0	broad.mit.edu	37	15	22709277	22709278	+	RNA	INS	-	-	A	rs377506667		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	.	.	.	.	GGATTCCAAAAAA		8	2	0.25	6	0	0				0	0				
FAM98B	283742	broad.mit.edu	37	15	38776833	38776833	+	Silent	SNP	T	T	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	FAM98B_ENST00000397609,NS,carcinoma,0,2	FAM98B	NM_173611	exon8	c.T1275A	p.G425G	TGGTGGTGGAGGA		148	6	0.04	78	2	0.0256410256		53	2	1	0	0.00			
DISP2	85455	broad.mit.edu	37	15	40650534	40650536	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	CAG	CAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	DISP2	NM_033510	exon1	c.12_14del	p.4_5del	CGGTGACAGCAGC		6	2	0.33	4	0	0		86		1	0	0.00			
SPTBN5	51332	mdanderson.org	37	15	42185137	42185137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_016642	exon3	c.C234A	p.H78Q	CAGGAAGTGCACA		42	3	0.07	34	0	0				0	0				
ARIH1	25820	mdanderson.org	37	15	72767235	72767235	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_005744	exon1	c.C255T	p.G85G	CGGCGGCGGTGGT		75	6	0.08	62	2	0.0322580645				0	0				
VPS33B	26276	broad.mit.edu	37	15	91545330	91545330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	VPS33B	NM_018668	exon18	c.T1355C	p.L452P	GCTGTGAGGGTGT		140	4	0.03	92	0	0		42		64	0	0.00			
HBA2	3040	broad.mit.edu	37	16	223511	223511	+	Missense_Mutation	SNP	T	T	C	rs281860618	bycluster	TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	HBA2	NM_000517	exon3	c.T341C	p.L114P	CCCACCTCCCCGC		270	10	0.04	223	4	0.0179372197		3		7	0	0.00			
WDR24	84219	mdanderson.org	37	16	736808	736808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_032259	exon3	c.G1268A	p.G423D	GGCCGGCCAGCCA		44	3	0.07	54	0	0				25	0	0.00			
BAIAP3	8938	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	1391420	1391420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	BAIAP3	NM_003933	exon8	c.G766A	p.A256T	CTGCCTGCCAAGT		167	7	0.04	160	0	0		88		38	0	0.00			
DNASE1L2	1775	mdanderson.org	37	16	2287219	2287219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001374	exon4	c.C234A	p.S78R	CCGCAGCGTGTCC		48	3	0.06	44	0	0				0	0				
UBN1	29855	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4924423	4924423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	UBN1	NM_001079514	exon15	c.C2012T	p.S671F	CAGCCTCCTCGGT		100	16	0.16	64	1	0.015625		88		141	38	0.27			
CRYM	1428	mdanderson.org	37	16	21289540	21289540	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001888	exon3	c.C33A	p.A11A	CACCTCGGCCGCG		26	3	0.12	26	0	0				10	0	0.00			
CDH16	1014	mdanderson.org	37	16	66942309	66942309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_004062	exon18	c.A2476G	p.K826E	TCGCCTTCAGGGG		37	3	0.08	44	0	0				0	0				
MTSS1L	92154	broad.mit.edu	37	16	70698201	70698201	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	MTSS1L	NM_138383	exon15	c.G1623T	p.G541G	GGGCAGCCCAGCA		35	5	0.14	23	0	0		22		22	2	0.09			
PSMD7	5713	broad.mit.edu	37	16	74335489	74335489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	PSMD7	NM_002811	exon4	c.C296A	p.P99H	CAGGCCCTAAACT		70	4	0.06	67	0	0		29		193	0	0.00			
PKD1L2	114780	broad.mit.edu;mdanderson.org	37	16	81253925	81253925	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	PKD1L2_ENST00000525539,rectum,carcinoma,0,2	PKD1L2	NM_001076780	exon1	c.C51A	p.A17A	AGTGGTGGCCCTA		140	5	0.04	146	0	0		361	2	0	0				
ADAD2	161931	broad.mit.edu	37	16	84228102	84228102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	ADAD2	NM_139174	exon3	c.C689T	p.A230V	GCCCTGCGGGCAC		45	3	0.07	57	0	0		46		3	0	0.00			
SMG6	23293	mdanderson.org	37	17	1968954	1968954	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_017575	exon17	c.C3855A	p.G1285G	GGCCAGGCCGTCC		41	3	0.07	32	0	0				34	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		193	16	0.08	227	5	0.0220264317				22	17	0.77			
CDC27	996	broad.mit.edu	37	17	45234323	45234323	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	CDC27	NM_001114091	exon7	c.A798G	p.R266R	TAAACTTCGACCA		60	4	0.07	47	1	0.0212765957		337		181	0	0.00			
STRADA	92335	broad.mit.edu	37	17	61790804	61790804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	STRADA	NM_001003787	exon6	c.C310A	p.L104I	CTTCTAGGTTAAT		234	6	0.03	105	0	0		27		81	0	0.00			
FASN	2194	broad.mit.edu	37	17	80043188	80043188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	FASN	NM_004104	exon24	c.C4213T	p.R1405W	TGGGCCGGCGGCA		222	5	0.02	156	0	0		154		225	0	0.00			
ZNF491	126069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11917208	11917208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_152356	exon3	c.T440C	p.L147P	TATACCTTACCCA		99	13	0.13	77	0	0				2	0	0.00			
ZNF799	90576	ucsc.edu	37	19	12501830	12501830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	ZNF799	NM_001080821	exon4	c.A1382G	p.Y461C	AAGGAATAGAAAT		184	5	0.03	130	1	0.0076923077		111		41	14	0.34	rescued with RNA-seq		
ZNF799	90576	ucsc.edu	37	19	12501855	12501855	+	Missense_Mutation	SNP	A	A	G	rs201077492		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	ZNF799	NM_001080821	exon4	c.T1357C	p.C453R	TCCCACATTTGCA		184	11	0.06	134	2	0.0149253731		111		49	18	0.37			
ZSWIM4	65249	mdanderson.org	37	19	13915877	13915877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_023072	exon3	c.C627A	p.S209R	CATCAGCGCCCAT		44	3	0.07	45	0	0				19	0	0.00			
ZNF429	353088	mdanderson.org	37	19	21720482	21720482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001001415	exon4	c.G1627T	p.G543C	GAATGTGGCAAAG		51	3	0.06	49	0	0				23	0	0.00			
IRF2BP1	26145	mdanderson.org	37	19	46388367	46388367	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_015649	exon1	c.G666A	p.W222X	CCCGTGCCATTCC		29	3	0.10	34	0	0				58	0	0.00			
MZF1	7593	mdanderson.org	37	19	59073497	59073497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_003422	exon6	c.G2147A	p.R716H	AAGCGGCGGCCAC		47	3	0.06	33	0	0				41	0	0.00			
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37450403	37450403	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_005760	exon3	c.G1791C	p.Q597H	TGGCATCTGTTGA		146	23	0.16	116	0	0				265	61	0.23			
RASSF2	9770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4768332	4768332	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_014737	exon10	c.A760T	p.I254F	TGGAGATCTGCTC		142	31	0.22	112	0	0				56	23	0.41			
FRG1B	284802	bcgsc.ca	37	20	29628229	29628229	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	FRG1B	.	.	.	.	TTAGGGGAAAATG		493	20	0.04	394	9	0.0228426396		181		94	0	0.00			
POFUT1	23509	mdanderson.org	37	20	30795757	30795757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	POFUT1,NS,carcinoma,-2,1	POFUT1	NM_172236	exon1	c.G13T	p.A5S	GCCGCCGCGTGGG		17	2	0.12	9	0	0		-2	1	28	0	0.00			
CDH26	60437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58560110	58560110	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_177980	exon7	c.C763T	p.L255L	CCGTCACTGTCAT		143	20	0.14	106	0	0				0	0				
KRTAP10-10	353333	mdanderson.org	37	21	46057778	46057778	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_181688	exon1	c.G444T	p.V148V	CTGTGTGCCTGTC		75	4	0.05	59	0	0				0	0				
MCM3AP	8888	broad.mit.edu	37	21	47704596	47704596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	MCM3AP	NM_003906	exon1	c.C605A	p.A202D	GTGGTAGCTGAAC		134	5	0.04	101	0	0		146		46	0	0.00			
OR11H1	81061	bcgsc.ca;mdanderson.org	37	22	16449645	16449645	+	Missense_Mutation	SNP	T	T	C	rs145243620		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	OR11H1	NM_001005239	exon1	c.A160G	p.I54V	CTGTTATAGTCAG		554	43	0.08	540	0	0		44		0	0				
DGCR6	8214	mdanderson.org	37	22	18897765	18897765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_005675	exon3	c.G352A	p.A118T	CAGGCGGCTCAGC		50	3	0.06	37	0	0				24	0	0.00			
RTN4R	65078	mdanderson.org	37	22	20229344	20229344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_023004	exon2	c.G1312A	p.G438S	CGCCACCCCCGCT		59	3	0.05	51	0	0				18	0	0.00			
CELSR1	9620	broad.mit.edu	37	22	46832175	46832175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	CELSR1	NM_014246	exon4	c.A4418G	p.Q1473R	CTTTCCTGAGTGG		81	3	0.04	53	0	0		242		17	0	0.00			
EPM2AIP1	9852	mdanderson.org	37	3	37034271	37034271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_014805	exon1	c.G298T	p.A100S	GGCCTGCACGAGC		53	3	0.06	30	0	0				1	0	0.00			
.	0	bcgsc.ca	37	3	98378117	98378117	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	.	.	.	.	CTCAAGGCTTACA		141	44	0.31	108	0	0				1	0	0.00			
LOC220729	0	broad.mit.edu	37	3	197348646	197348646	+	RNA	SNP	T	T	C	rs377377382		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	.	.	.	.	CCTGCCTGCCCTT		82	5	0.06	60	1	0.0166666667				15	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55593605	55593605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	KIT,NS,germ_cell_tumour,+2,59	KIT	NM_000222	exon11	c.G1671T	p.W557C	ACAGTGGAAGGTT		266	28	0.11	122	0	0		2	59	622	100	0.16			
MTHFD2L	441024	broad.mit.edu	37	4	75067012	75067012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	MTHFD2L	NM_001144978	exon5	c.G637T	p.A213S	GTTGTGGCTGGAA		138	4	0.03	143	0	0		41		1	0	0.00			
DSPP	1834	bcgsc.ca	37	4	88537114	88537114	+	Silent	SNP	C	C	T	rs369973717		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	DSPP	NM_014208	exon5	c.C3300T	p.S1100S	TAGCAGCGACAGC		28	8	0.29	32	0	0		174		0	0				
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134072091	134072091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_032961	exon1	c.G796C	p.G266R	CCCCCAGGCACTC		50	9	0.18	73	0	0				0	0				
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134073757	134073757	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_032961	exon1	c.A2462T	p.Y821F	ACTGCTATCAGGT		77	12	0.16	109	0	0				1	1	1.00			
MAN2A1	4124	mdanderson.org	37	5	109103372	109103372	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_002372	exon6	c.G972A	p.L324L	TGCACTGCATAAA		55	4	0.07	53	0	0				4	0	0.00			
FBN2	2201	mdanderson.org	37	5	127873220	127873220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001999	exon1	c.C77T	p.T26M	CCGGCCGTGCCCT		24	3	0.13	50	0	0				0	0				
BTN2A3P	0	broad.mit.edu;mdanderson.org	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	BTN2A3,NS,carcinoma,0,9	.	.	.	.	.	ATGGAACCAGCTG		130	6	0.05	113	0	0			9	0	0				
ZNF322	79692	broad.mit.edu	37	6	26637624	26637624	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001242797	exon5	c.1158delA	p.K386fs	AAGACCTTTTTCA		833	8	0.01	727	0	0				31	0	0.00			
VWA7	80737	broad.mit.edu	37	6	31733784	31733784	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_025258	exon16	c.T2375G	p.V792G	TCTGGGACCTCCA		108	37	0.34	69	20	0.2898550725				1	0	0.00			
HLA-DOA	3111	broad.mit.edu	37	6	32975873	32975873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	HLA-DOA	NM_002119	exon2	c.A248G	p.Q83R	CCGCCCTGCGGGT		107	4	0.04	69	1	0.0144927536		22		31	0	0.00			
KLHL31	401265	mdanderson.org	37	6	53516646	53516646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001003760	exon3	c.A1655G	p.Q552R	CCCACCTGCAGCG		32	3	0.09	25	0	0				0	0				
IGF2R	3482	broad.mit.edu	37	6	160509121	160509121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	IGF2R,NS,carcinoma,0,3	IGF2R	NM_000876	exon42	c.G6262A	p.A2088T	AAGACCGCATCCT		116	4	0.03	94	0	0		251	3	118	1	0.01			
RAC1	5879	broad.mit.edu	37	7	6441622	6441622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	RAC1	NM_018890	exon6	c.A469G	p.T157A	CCCATCACCTATC		116	3	0.03	74	0	0		101		798	2	0.00			
GTF2IRD2P1	0	broad.mit.edu;bcgsc.ca	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	.	.	.	.	CCGGGGTCCTTGA		177	7	0.04	105	1	0.0095238095				0	0				
GTF2I	2969	broad.mit.edu	37	7	74148279	74148279	+	Missense_Mutation	SNP	A	A	G	rs1135649		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	GTF2I,NS,carcinoma,0,7	GTF2I	NM_032999	exon16	c.A1319G	p.N440S	TTCTGAATTCAAC		638	6	0.01	415	1	0.0024096386		40	7	485	0	0.00			
SSPO	23145	mdanderson.org	37	7	149523792	149523792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_198455	exon103	c.C14602T	p.P4868S	TGTGTGCCTCCCA		21	2	0.10	18	0	0				0	0				
UBE3C	9690	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	157023941	157023941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	UBE3C	NM_014671	exon18	c.T2401C	p.Y801H	CTTCTGTACCCCA		221	46	0.21	145	1	0.0068965517		124		176	40	0.23			
DUSP4	1846	mdanderson.org	37	8	29207399	29207399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001394	exon1	c.C397T	p.R133C	CGTTGCGGCGCAG		10	2	0.20	10	0	0				3	0	0.00			
AK3	50808	mdanderson.org	37	9	4741004	4741004	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001199852	exon1	c.T84C	p.T28T	GTGTGTAGTGATG		60	3	0.05	93	0	0				16	0	0.00			
SIGMAR1	10280	mdanderson.org	37	9	34637553	34637553	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_147157	exon1	c.C142T	p.Q48X	CGTACTGCCGCGC		48	3	0.06	14	0	0				75	0	0.00			
RC3H2	54542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125643061	125643061	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_018835	exon6	c.G772C	p.D258H	CTTCATCTCTTTT		86	15	0.17	88	0	0				48	20	0.42			
TTF1	7270	mdanderson.org	37	9	135277780	135277780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_007344	exon2	c.C429A	p.D143E	AAATTTGTCTGTT		92	4	0.04	75	0	0				42	0	0.00			
RABL6	55684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139702690	139702690	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_024718	exon1	c.C42T	p.A14A	CCAGGCCCCGGGC		81	29	0.36	103	0	0				38	9	0.24			
ND4	0	hgsc.bcm.edu;broad.mit.edu	37	MT	11796	11796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	ENST00000361381	exon1	c.A1037G	p.Q346R	TCTCTCAAGGACT		29	5	0.17	13	0	0				0	0				
MID2	11043	mdanderson.org	37	X	107084386	107084386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_052817	exon2	c.G491A	p.R164H	GTGACCGTTGCCT		54	3	0.06	64	0	0				4	0	0.00			
GABRE	2564	broad.mit.edu	37	X	151123181	151123181	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	GABRE	NM_004961	exon9	c.A1513T	p.N505Y	ACAAGTTAAGGCA		110	14	0.13	114	7	0.0614035088		141		0	0				
ABCD1	215	mdanderson.org	37	X	153008731	153008731	+	Missense_Mutation	SNP	G	G	T	rs200460000		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_000033	exon9	c.G1922T	p.G641V	TGGAAGGCAAGAT		62	9	0.15	59	1	0.0169491525				22	0	0.00			
