Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MST1L	11223	bcgsc.ca	37	1	17084768	17084768	+	Missense_Mutation	SNP	G	G	C	rs2092129	bycluster;byfrequency	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	GACCCCGCGCAGA		197	12	0.06	181	2	0.0110497238				2	0	0.00			
XKR8	55113	broad.mit.edu	37	1	28293362	28293362	+	Missense_Mutation	SNP	G	G	A	rs147277716	bycluster	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	XKR8	NM_018053	exon3	c.G839A	p.R280H	AGGGCCGCACCCG		72	3	0.04	88	1	0.0113636364		15		34	0	0.00			
CELF3	11189	broad.mit.edu	37	1	151678746	151678746	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	CELF3	NM_007185	exon10	c.G1080A	p.Q360Q	CTGCTGCTGTTGA		37	5	0.14	22	0	0		49		1	0	0.00			
C1orf61	10485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156384450	156384450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_006365	exon4	c.G167A	p.R56Q	ACCGCCCGGGAGC		78	20	0.26	60	0	0				1	1	1.00			
.	0	bcgsc.ca	37	1	192215884	192215884	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	TACATCCTTAATT		280	46	0.16	299	0	0				8	0	0.00			
.	0	broad.mit.edu	37	1	204363980	204363981	+	RNA	DEL	AA	AA	-	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	AA	AA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	TTTTTCAAAAAAA		6	2	0.33	4	0	0				0	0				
DPCD	25911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103361002	103361002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_015448	exon4	c.C313T	p.R105W	CAGTGGCGGATTC		80	18	0.23	69	0	0				30	11	0.37			
MUC2	4583	broad.mit.edu	37	11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	MUC2	NM_002457	exon30	c.C5111T	p.T1704I	CCACCACCACTAC		18	3	0.17	23	0	0		614		0	0				
SLC43A3	29015	bcgsc.ca	37	11	57193118	57193118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	SLC43A3	NM_014096	exon4	c.C210A	p.F70L	GAGTGAGAACCTC		84	5	0.06	70	0	0		54		5	0	0.00			
IQSEC3	440073	hgsc.bcm.edu	37	12	274692	274692	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_001170738	exon10	c.G2802C	p.E934D	CTTTGAGAACGAG		253	11	0.04	87	0	0				4	0	0.00			
TAS2R43	259289	hgsc.bcm.edu	37	12	11244878	11244878	+	RNA	SNP	A	A	G	rs369719862		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	TCCGGAATTGGTT		93	6	0.06	18	0	0				0	0				
FAM186A	121006	broad.mit.edu	37	12	50756999	50756999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	FAM186A	NM_001145475	exon2	c.C341A	p.A114D	TAAGTAGCCATTT		108	4	0.04	78	0	0		181		0	0				
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56092570	56092570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	ITGA7_ENST00000553804,colon,carcinoma,0,2	ITGA7_ENST00000553804	NM_001144996	exon6	c.G934A	p.E312K	TAACCTCGGGCAC		100	25	0.25	92	0	0		0	2	9	2	0.22			
PABPC3	5042	bcgsc.ca	37	13	25671122	25671122	+	Silent	SNP	C	C	T	rs79072440	bycluster	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	PABPC3	NM_030979	exon1	c.C786T	p.Y262Y	AATTTACGTTGGT		103	8	0.08	104	1	0.0096153846		129		3	3	1.00			
POTEG	404785	broad.mit.edu	37	14	19553528	19553528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	POTEG	NM_001005356	exon1	c.A112G	p.S38G	AGGGGGAGCGGCA		1024	11	0.01	988	2	0.0020242915		118		0	0				
.	0	broad.mit.edu	37	14	19890158	19890160	+	RNA	DEL	GCC	GCC	-	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	GCC	GCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	GCAGCGGCCGCCA		10	8	0.80	4	0	0				0	0				
UNC79	57578	broad.mit.edu	37	14	94103583	94103583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	UNC79	NM_020818	exon33	c.G5324T	p.R1775L	GGAAACGCCAGTG		77	4	0.05	80	0	0		366		0	0				
.	283685	bcgsc.ca	37	15	23685728	23685728	+	Missense_Mutation	SNP	C	C	G	rs376316505	bycluster	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	CCGCATCCTCTCC		15	5	0.33	17	0	0				0	0				
MAGEL2	54551	bcgsc.ca	37	15	23889164	23889164	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	MAGEL2	NM_019066	exon1	c.C3726A	p.P1242P	GCTGGTGGGGCCG		55	5	0.09	77	0	0		108		13	0	0.00			
WASH3P	374666	hgsc.bcm.edu	37	15	102515335	102515335	+	RNA	SNP	C	C	G	rs201001946		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	WASH3P,NS,carcinoma,0,4	WASH3P	.	.	.	.	CGAAAGCTGGAGA		41	3	0.07	47	0	0		0	4	169	16	0.09			
UBALD1	124402	broad.mit.edu	37	16	4659850	4659850	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_145253	exon3	c.A318C	p.S106S	CGGGGGTGACGTG		34	18	0.53	33	12	0.3636363636				27	12	0.44			
RRN3P3	0	broad.mit.edu	37	16	22448752	22448753	+	RNA	INS	-	-	GCGGCGGCG	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	CGGCTGAGCGGCG		8	3	0.38	9	0	0				1	0	0.00			
PRPF8	10594	hgsc.bcm.edu	37	17	1579989	1579989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_006445	exon16	c.C2198A	p.T733K	ATGGGCGTCGGCA		57	4	0.07	72	0	0				20	0	0.00			
KRT32	3882	hgsc.bcm.edu;bcgsc.ca	37	17	39619137	39619137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_002278	exon6	c.C1162T	p.R388W	CCAGCCGGGCCCG		96	5	0.05	78	0	0				0	0				
ACE	1636	bcgsc.ca	37	17	61557201	61557201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	ACE,NS,carcinoma,-1,1	ACE	NM_000789	exon4	c.G583T	p.A195S	CACAACGCTGCGG		55	4	0.07	40	0	0		187	1	6	0	0.00			
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	21427447	21427480	+	Frame_Shift_Del	DEL	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC	-	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_198129	exon32	c.3950_3983del	p.1317_1328del	TCGGCGCCTTTGT		26	7	0.27	23	0	0				0	0				
RYR1	6261	hgsc.bcm.edu	37	19	38986924	38986924	+	Silent	SNP	G	G	T	rs370261565	alternate_allele	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	RYR1,NS,carcinoma,0,1	RYR1	NM_001042723	exon40	c.G6618T	p.T2206T	CGAGACGGTCATG		42	2	0.05	33	0	0		0	1	0	0				
SNRNP200	23020	hgsc.bcm.edu;bcgsc.ca	37	2	96943998	96943998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_014014	exon39	c.C5587A	p.H1863N	CTTCATGGTGCCG		93	6	0.06	79	0	0				261	0	0.00			
ANKRD36B	57730	broad.mit.edu	37	2	98192550	98192550	+	RNA	DEL	T	T	-	rs370632971		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	TGACTATTAAAAA		13	4	0.31	6	0	0				0	0				
POLR1B	84172	broad.mit.edu	37	2	113333030	113333030	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	POLR1B,NS,carcinoma,0,1	POLR1B	NM_019014	exon15	c.G3132T	p.A1044A	GGATGCGCTTTTA		169	4	0.02	155	0	0		95	1	34	0	0.00			
GAL3ST2	64090	hgsc.bcm.edu;broad.mit.edu	37	2	242742846	242742846	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_022134	exon4	c.C462G	p.Y154X	CTACTACAAAACC		181	39	0.22	131	0	0				0	0				
ELMO2	63916	hgsc.bcm.edu	37	20	45014804	45014804	+	Silent	SNP	G	G	A	rs201990540	bycluster;by1000genomes	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	ELMO2,NS,carcinoma,-1,1	ELMO2	NM_182764	exon8	c.C636T	p.A212A	TTCCTCGGCTATC		64	5	0.08	43	1	0.023255814	0.002	-1	1	4	0	0.00			
.	0	broad.mit.edu	37	22	18846121	18846121	+	RNA	SNP	C	C	T	rs4302302	bycluster;byfrequency	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	CACTGGCGCACGA		199	13	0.07	106	1	0.0094339623				1	0	0.00			
CELSR1	9620	ucsc.edu	37	22	46768831	46768831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	CELSR1	NM_014246	exon25	c.C7708T	p.P2570S	GCATGGGCCCCGT		28	4	0.14	39	0	0		242		1	0	0.00			
POGLUT1	56983	broad.mit.edu	37	3	119204180	119204180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	POGLUT1	NM_152305	exon6	c.C584T	p.A195V	GGTCAGCAGCACA		262	6	0.02	289	1	0.0034602076		32		8	0	0.00			
NUP210P1	0	broad.mit.edu	37	3	126385091	126385091	+	RNA	DEL	C	C	-	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	CTGCTGCTTGGAG		7	3	0.43	10	0	0				0	0				
MSL2	55167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	135871188	135871188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_018133	exon2	c.G535A	p.E179K	TGCTTTCAGACAT		132	28	0.21	126	0	0				14	5	0.36			
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	167034805	167034805	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_024687	exon14	c.C1182T	p.V394V	CAGTTCGACTATC		142	22	0.15	96	0	0				0	0				
SPATA18	132671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	52943177	52943177	+	Missense_Mutation	SNP	G	G	A	rs193921037	bycluster;by1000genomes	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	SPATA18_ENST00000295213,NS,adenoma,0,2	SPATA18_ENST00000295213	NM_145263	exon7	c.G991A	p.V331I	GAGACCGTTCAGC		215	26	0.12	174	0	0		0	2	1	1	1.00			
TMPRSS11E	28983	broad.mit.edu	37	4	69343244	69343244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	TMPRSS11E	NM_014058	exon8	c.T865C	p.Y289H	GTTCCCTACACAA		369	5	0.01	421	0	0		40		0	0				
NEIL3	55247	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	178272589	178272589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	NEIL3	NM_018248	exon7	c.G925A	p.V309I	GATCATGTTATGG		67	41	0.61	72	1	0.0138888889		89		4	3	0.75			
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187557879	187557879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_005245	exon5	c.G3832A	p.D1278N	CCTTGTCGGTGGC		164	31	0.19	115	0	0				0	0				
PRLR	5618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	35065642	35065642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	PRLR,NS,carcinoma,-1,1	PRLR	NM_000949	exon10	c.C1418T	p.A473V	TGGGTTGCCTTTC		136	48	0.35	157	0	0		-1	1	2	0	0.00			
PAIP1	10605	hgsc.bcm.edu	37	5	43539098	43539098	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_006451	exon5	c.A774G	p.K258K	ATCCCCTTTTGCA		61	4	0.07	54	0	0				45	0	0.00			
CMAHP	0	broad.mit.edu	37	6	25091943	25091945	+	RNA	DEL	ATA	ATA	-	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	ATA	ATA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	CMAHP	.	.	.	.	TTAATTATAATTA		9	2	0.22	3	0	0		6		0	0				
MYO6	4646	broad.mit.edu	37	6	76591494	76591494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	MYO6,NS,carcinoma,+1,1	MYO6	NM_004999	exon23	c.G2375T	p.R792L	GCAGTCGCTGGAA		91	3	0.03	100	1	0.01		124	1	5	0	0.00			
MOXD1	26002	broad.mit.edu;bcgsc.ca	37	6	132643950	132643950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	MOXD1	NM_015529	exon8	c.C1173A	p.H391Q	AGCCAGGTGAGCA		142	7	0.05	122	0	0		136		7	0	0.00			
RAPGEF5	9771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	22348122	22348122	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_012294	exon5	c.C57T	p.D19D	ATGCTGGTCCACT		90	9	0.10	55	0	0				0	0				
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	CCGGGGTCCTTGA		134	4	0.03	80	0	0				0	0				
GTF2IRD2P1	0	broad.mit.edu	37	7	72669802	72669802	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	ATCTTGAAAAAAA		550	10	0.02	451	5	0.0110864745				0	0				
.	0	broad.mit.edu	37	7	75730186	75730186	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	TTATTGTTTTAAT		6	2	0.33	4	0	0				0	0				
FLNC	2318	broad.mit.edu	37	7	128478446	128478446	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	FLNC	NM_001127487	exon7	c.G1173T	p.V391V	CAATGTGGCCAAC		106	4	0.04	82	0	0		339		11	0	0.00			
CALB1	793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	91078131	91078131	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_004929	exon6	c.C445T	p.L149L	CCATTAGGTCTGT		120	16	0.13	114	0	0				74	18	0.24			
GRHL2	79977	broad.mit.edu	37	8	102585952	102585952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	GRHL2	NM_024915	exon6	c.A791G	p.E264G	AGGGGGAGGGCCC		178	4	0.02	124	1	0.0080645161		68		2	0	0.00			
ND4	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	12077	12077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	ENST00000361381	exon1	c.C1318T	p.H440Y	TTCATACACCTAT		33	25	0.76	20	0	0				0	0				
CYTB	0	bcgsc.ca	37	MT	15639	15639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	ENST00000361789	exon1	c.T893C	p.I298T	TATCCATCCTCAT		38	35	0.92	18	1	0.0555555556				0	0				
RBM3	5935	ucsc.edu	37	X	48434994	48434994	+	Splice_Site	SNP	T	T	G	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	RBM3	NM_006743	exon5	c.413+2T>G	.	GGCAGGTGGGTAG		54	15	0.28	39	7	0.1794871795		20		2	0	0.00			
.	648283	bcgsc.ca	37	X	83004722	83004722	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	CAAATTGTGCATC		86	36	0.42	58	0	0				5	0	0.00			
