Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
SLC2A7	155184	bcgsc.ca	37	1	9074839	9074839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	SLC2A7	NM_207420	exon7	c.C804A	p.H268Q	AGACAGGTGGCCC		86	0	0.00	50	1	0.02		56		1	0	0.00			
PTCHD2	57540	bcgsc.ca	37	1	11580781	11580781	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	PTCHD2	NM_020780	exon10	c.C2238T	p.F746F	GGTGTTCGCCAGC		300	2	0.01	159	1	0.0062893082		193		1	0	0.00			
CROCCP2	0	broad.mit.edu	37	1	16946455	16946456	+	RNA	INS	-	-	GCTCACGCTGCA	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	.	.	.	.	TCCTCCTGCTCAC		128	9	0.07	83	0	0				10	0	0.00			
KLHDC7A	127707	broad.mit.edu	37	1	18809307	18809307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	KLHDC7A	NM_152375	exon1	c.G1832T	p.R611L	TGGACCGCTGGGA		144	3	0.02	63	0	0		60		0	0				
FAM110D	79927	bcgsc.ca	37	1	26487994	26487994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_024869	exon2	c.G212A	p.R71H	CGGTCCGCCGGGG		189	0	0.00	106	1	0.0094339623				1	0	0.00			
RPL5	6125	hgsc.bcm.edu;broad.mit.edu	37	1	93299200	93299201	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_000969	exon3	c.171_172del	p.57_58del	ACAAACAGAGATA		49	17	0.35	48	0	0				1926	0	0.00			
DCLRE1B	64858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	114448290	114448290	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_022836	exon1	c.T82A	p.F28I	CTCTTCTTCTTGT		174	26	0.15	109	0	0				6	1	0.17			
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	177249621	177249621	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_021165	exon8	c.C1309T	p.L437L	ACTTTCCTGGAAC		311	68	0.22	287	0	0				0	0				
.	0	bcgsc.ca	37	1	189959978	189959978	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	.	.	.	.	TTTTTCACTGTCC		16	0	0.00	23	0	0				0	0				
FAM5C	339479	bcgsc.ca	37	1	190068175	190068175	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	FAM5C,NS,carcinoma,+1,3	FAM5C	NM_199051	exon8	c.C1274G	p.S425W	GTGCACGAGTGCG		65	0	0.00	101	0	0		343	3	0	0				
EPRS	2058	broad.mit.edu	37	1	220151968	220151968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	EPRS,NS,carcinoma,0,1	EPRS	NM_004446	exon28	c.C4003A	p.L1335I	CACTGAGTAATCG		83	5	0.06	105	0	0		140	1	235	1	0.00			
.	0	broad.mit.edu	37	1	247903046	247903047	+	RNA	DEL	TA	TA	-	rs59359555	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	TA	TA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	.	.	.	.	TTTTTTTAAAATT		12	4	0.33	6	0	0				0	0				
FRMD4A	55691	broad.mit.edu	37	10	13699134	13699142	+	In_Frame_Del	DEL	CGCCCCCCG	CGCCCCCCG	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	CGCCCCCCG	CGCCCCCCG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	FRMD4A	NM_018027	exon22	c.2447_2455del	p.816_819del	ACACACCGCCCCC		6	2	0.33	6	0	0		108		0	0				
CSGALNACT2	55454	hgsc.bcm.edu	37	10	43659372	43659372	+	Nonsense_Mutation	SNP	C	C	T	rs76607193	bycluster;byfrequency	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	CSGALNACT2,trunk,malignant_melanoma,0,1	CSGALNACT2	NM_018590	exon5	c.C1039T	p.R347X	CGTGGACGAGGAC		81	4	0.05	101	0	0	0.003	0	1	9	0	0.00			
FAM21B	55747	broad.mit.edu	37	10	47948782	47948782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	FAM21B	NM_018232	exon29	c.C3691T	p.P1231S	GCCGCACCTGAAC		433	133	0.31	659	0	0		31		59	25	0.42			
PTDSS2	81490	hgsc.bcm.edu;broad.mit.edu	37	11	488541	488541	+	Missense_Mutation	SNP	G	G	T	rs34809643	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_030783	exon8	c.G748T	p.V250L	ATGGACGTGCTCG		66	4	0.06	46	0	0				88	0	0.00			
MUC6	4588	bcgsc.ca	37	11	1016801	1016801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	MUC6	NM_005961	exon31	c.C6000G	p.H2000Q	CTGAGGGTGTGAT		322	11	0.03	386	6	0.0155440415		408		1	0	0.00			
ASRGL1	80150	broad.mit.edu	37	11	62105556	62105556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ASRGL1	NM_001083926	exon2	c.G107A	p.G36D	GCTACGGCATCCT		73	4	0.05	52	0	0		25		142	0	0.00			
MTA2	9219	bcgsc.ca	37	11	62365527	62365527	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	MTA2	NM_004739	exon6	c.C459T	p.Y153Y	AGCTTGGTATTTG		117	0	0.00	128	0	0		54		31	0	0.00			
MAP4K2	5871	bcgsc.ca	37	11	64566925	64566925	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	MAP4K2	NM_004579	exon14	c.C1021G	p.R341G	TCCTGCGTGGGGC		107	0	0.00	109	0	0		83		29	0	0.00			
PPP1CA	5499	broad.mit.edu	37	11	67168607	67168607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	PPP1CA	NM_001008709	exon2	c.T152C	p.L51P	GATTTCAGGCACA		84	4	0.05	85	0	0		83		456	0	0.00			
TAS2R8	50836	bcgsc.ca	37	12	10959286	10959286	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	TAS2R8	NM_023918	exon1	c.G294C	p.W98C	GGTAATCCACATA		180	0	0.00	96	0	0		42		0	0				
ABCC9	10060	bcgsc.ca	37	12	22061069	22061069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ABCC9	NM_005691	exon9	c.T1397C	p.L466P	GGCGCAAGGAGCA		404	0	0.00	303	1	0.00330033		411		1	0	0.00			
FAM101A	144347	broad.mit.edu	37	12	124798964	124798964	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	FAM101A	NM_181709	exon3	c.A301C	p.T101P	CGGACCACCCTGC		52	13	0.25	29	3	0.1034482759		10		11	0	0.00			
.	0	broad.mit.edu	37	14	19114215	19114215	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	.	.	.	.	CTCAAGTTGAACT		6	2	0.33	5	0	0				0	0				
L2HGDH	79944	bcgsc.ca	37	14	50713845	50713847	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	AGG	AGG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	L2HGDH	NM_024884	exon10	c.1321_1323del	p.441_441del	AGCAGCAGGAGAA		164	0	0.00	228	0	0		33		9	0	0.00			
SERPINA10	51156	bcgsc.ca	37	14	94756510	94756510	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	SERPINA10	NM_001100607	exon2	c.C421T	p.L141L	AAGGCAGGAGCCC		145	0	0.00	135	0	0		83		1	0	0.00			
CEP170B	283638	hgsc.bcm.edu;broad.mit.edu	37	14	105352457	105352457	+	Silent	SNP	G	G	A	rs372643760		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001112726	exon11	c.G2025A	p.P675P	AGACCCGGGCCTC		34	5	0.15	21	0	0				0	0				
AHNAK2	113146	bcgsc.ca	37	14	105416870	105416870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	AHNAK2_ENST00000333244,NS,carcinoma,+2,1	AHNAK2	NM_138420	exon7	c.C4918A	p.L1640M	CCTCCAGCTGCGC		230	0	0.00	172	0	0		719	1	0	0				
DISP2	85455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	40656718	40656718	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_033510	exon4	c.G576A	p.R192R	GGCCCGGCTGCCC		73	35	0.48	54	0	0				1	1	1.00			
EIF3J	8669	hgsc.bcm.edu	37	15	44829418	44829418	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_003758	exon1	c.G26C	p.G9A	CGGCGGGGGACTC		396	76	0.19	197	0	0				2	0	0.00			
MYEF2	50804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	48450208	48450208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_016132	exon9	c.A967G	p.K323E	GTGTTTTACCATC		129	28	0.22	176	0	0				1	0	0.00			
USP8	9101	hgsc.bcm.edu	37	15	50782530	50782530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001128610	exon14	c.C2042T	p.P681L	ACCCACCGGAAAT		154	7	0.05	172	0	0				18	0	0.00			
ZNF592	9640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	85326876	85326876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_014630	exon4	c.A970C	p.K324Q	AGCCCCAAAATGC		117	25	0.21	146	0	0				12	2	0.17			
ZNF592	9640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	85327404	85327404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_014630	exon4	c.C1498A	p.P500T	CTCCTGCCCAAAG		69	12	0.17	68	0	0				25	13	0.52			
NMRAL1	57407	bcgsc.ca	37	16	4519318	4519318	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	NMRAL1	NM_020677	exon3	c.C189T	p.V63V	CATGATGACCTGG		59	0	0.00	55	0	0		31		22	0	0.00			
.	0	bcgsc.ca	37	16	32403532	32403532	+	RNA	SNP	T	T	A	rs75037542	bycluster	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	.	.	.	.	TTCTTATGAAAAT		68	13	0.19	90	8	0.0888888889				0	0				
SLC12A3	6559	bcgsc.ca	37	16	56913028	56913028	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	SLC12A3	NM_001126108	exon10	c.A1224T	p.T408T	TGACACAGTGACC		77	0	0.00	74	0	0		99		1	0	0.00			
HSF4	3299	hgsc.bcm.edu;broad.mit.edu	37	16	67203680	67203680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001040667	exon15	c.T1471C	p.S491P	AGTCCCTCCCCCT		53	6	0.11	41	0	0				5	0	0.00			
DPH1	1801	broad.mit.edu	37	17	1939269	1939269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	DPH1	NM_001383	exon4	c.C299T	p.T100M	GGTTCACGGAGGC		85	3	0.04	58	0	0		32		42	0	0.00			
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	10309436	10309436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	MYH8,NS,carcinoma,+1,1	MYH8	NM_002472	exon21	c.C2354T	p.A785V	ATTTGGGCTAATT		65	15	0.23	89	0	0		1	1	0	0				
GPATCH8	23131	bcgsc.ca	37	17	42513867	42513867	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	GPATCH8	NM_001002909	exon4	c.C240A	p.G80G	ACCCATGCCCATG		54	0	0.00	65	0	0		114		0	0				
HOXB2	3212	broad.mit.edu	37	17	46622130	46622132	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	AGG	AGG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	HOXB2	NM_002145	exon1	c.142_144del	p.48_48del	CTCGAAAGGAGGA		95	7	0.07	59	0	0		23		21	0	0.00			
USP36	57602	bcgsc.ca	37	17	76810500	76810500	+	Silent	SNP	G	G	A	rs139221124	bycluster;byfrequency;by1000genomes	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	USP36	NM_025090	exon11	c.C1158T	p.Y386Y	CTTCACGTAGCAG		31	0	0.00	39	0	0		243		30	0	0.00			
FEM1A	55527	broad.mit.edu	37	19	4793691	4793691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	FEM1A	NM_018708	exon1	c.G1825T	p.A609S	ATGGACGCCACCA		30	3	0.10	21	0	0		41		15	0	0.00			
ANKLE1	126549	broad.mit.edu	37	19	17397500	17397501	+	Frame_Shift_Del	DEL	TT	TT	-	rs10606406	alternate_allele	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ANKLE1	.	.	.	.	TGTGTGTTTGTGT		13	8	0.62	18	0	0		27		8	0	0.00			
.	0	broad.mit.edu	37	19	19944580	19944580	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	.	.	.	.	TTAATCTTTTTTT		7	2	0.29	7	0	0				0	0				
LYPD4	147719	bcgsc.ca	37	19	42342975	42342975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	LYPD4	NM_173506	exon3	c.C191A	p.T64K	ACTAGCGTCTCCT		46	0	0.00	50	0	0		30		0	0				
SYMPK	8189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	46345588	46345588	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_004819	exon9	c.C1007G	p.A336G	TTGCGGGCGATCT		64	19	0.30	90	0	0				76	35	0.46			
IZUMO1	284359	hgsc.bcm.edu;broad.mit.edu	37	19	49248527	49248527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_182575	exon3	c.A254G	p.K85R	GACCCCTTTTGCA		77	4	0.05	121	0	0				0	0				
KIDINS220	57498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	8919088	8919088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_020738	exon19	c.A2552G	p.N851S	CTTGCATTGCTTA		78	20	0.26	105	0	0				4	0	0.00			
XDH	7498	bcgsc.ca	37	2	31602747	31602747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	XDH	NM_000379	exon13	c.C1228T	p.P410S	TGTAGGGGATCTC		84	0	0.00	98	0	0		191		1	0	0.00			
PKDCC	91461	bcgsc.ca	37	2	42275878	42275878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	PKDCC	NM_138370	exon1	c.G539T	p.R180L	GCGTGCGCGAGTT		54	0	0.00	29	0	0		21		54	0	0.00			
MRPS5	64969	bcgsc.ca	37	2	95753180	95753180	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	MRPS5	NM_031902	exon12	c.A1215G	p.K405K	GTCCAGTTTGACG		86	0	0.00	113	0	0		52		431	0	0.00			
KANSL3	55683	bcgsc.ca	37	2	97276835	97276835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001115016	exon10	c.G1127A	p.G376E	GGAAACCCAAGGC		103	0	0.00	89	0	0				8	0	0.00			
.	55041	broad.mit.edu	37	2	132110862	132110862	+	Silent	SNP	G	G	C	rs370398581		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	.	.	.	.	CGCTCCGGCTCTC		56	5	0.09	39	1	0.0256410256				0	0				
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	152484132	152484132	+	Missense_Mutation	SNP	C	C	T	rs377180119		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001271208	exon69	c.G10048A	p.D3350N	CCACATCGCTGAC		171	31	0.18	188	0	0				0	0				
CRYGB	1419	broad.mit.edu	37	2	209007463	209007463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	CRYGB,trunk,malignant_melanoma,+1,1	CRYGB	NM_005210	exon3	c.A427G	p.R143G	ACTGCCTCCCCCT		218	6	0.03	200	1	0.005		24	1	3	0	0.00			
TNS1	7145	bcgsc.ca	37	2	218751314	218751314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	TNS1	NM_022648	exon11	c.C547T	p.P183S	ACAAGGGCTTGTT		126	0	0.00	98	0	0		251		6	0	0.00			
ALPPL2	251	bcgsc.ca	37	2	233271791	233271791	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ALPPL2	NM_031313	exon2	c.G92C	p.W31S	ACTTCTGGAACCG		75	0	0.00	80	0	0		36		93	0	0.00			
.	339766	bcgsc.ca	37	2	234727321	234727321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	.	.	.	.	TTGTGGGGCCCTT		154	0	0.00	137	0	0				0	0				
GDF5	8200	bcgsc.ca	37	20	34025393	34025394	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	GDF5	NM_000557	exon1	c.316_317insA	p.P106fs	GCTTGGGTTCAGG		80	0	0.00	57	0	0		66		0	0				
.	128500	bcgsc.ca	37	20	44728480	44728480	+	RNA	SNP	G	G	A	rs73308794	bycluster;by1000genomes	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	.	.	.	.	TCCGAGGAGGCGG		74	0	0.00	59	0	0				0	0				
PI4KAP2	0	broad.mit.edu	37	22	21846329	21846329	+	RNA	DEL	C	C	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	PI4KAP2	.	.	.	.	GCGGGGCGGGGGG		17	8	0.47	8	0	0		11		22	1	0.05			
APOBEC3A	200315	hgsc.bcm.edu	37	22	39357586	39357586	+	Silent	SNP	T	T	C	rs202076860	bycluster	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	APOBEC3A,caecum,carcinoma,+1,1	APOBEC3A	NM_145699	exon3	c.T369C	p.R123R	ACTGCGTATCTTC		49	5	0.10	65	2	0.0307692308	0.001	1	1	7	0	0.00			
ZC3H7B	23264	bcgsc.ca	37	22	41742035	41742035	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ZC3H7B	NM_017590	exon14	c.C1488T	p.Y496Y	TAAGTACGGGGAT		62	0	0.00	51	0	0		82		20	0	0.00			
IQCF6	440956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	51812955	51812955	+	Missense_Mutation	SNP	C	C	T	rs370141442		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001143833	exon2	c.G8A	p.R3H	GTCCGGCGCACCA		115	19	0.17	88	0	0				0	0				
PRICKLE2	166336	bcgsc.ca	37	3	64142837	64142837	+	Splice_Site	SNP	C	C	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	PRICKLE2	NM_198859	exon6	c.600+1G>T	.	CTCTAACCTCATC		192	0	0.00	220	0	0		88		0	0				
CASR	846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	122002841	122002841	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001178065	exon7	c.C2070T	p.R690R	CCTGCGCCAGCCG		157	60	0.38	85	0	0				0	0				
SEMA5B	54437	broad.mit.edu	37	3	122640965	122640967	+	In_Frame_Del	DEL	CGA	CGA	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	CGA	CGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	SEMA5B	NM_001256347	exon12	c.1645_1647del	p.549_549del	GGTGCCCGACTCT		108	8	0.07	47	0	0		303		0	0				
USP46	64854	bcgsc.ca	37	4	53492336	53492336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	USP46	NM_022832	exon4	c.A410G	p.Q137R	TCCTCCTGAAGGA		106	0	0.00	144	0	0		38		2	0	0.00			
FAT4	79633	bcgsc.ca	37	4	126237899	126237899	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	FAT4_ENST00000394329,larynx,carcinoma,+2,2	FAT4	NM_024582	exon1	c.T333C	p.L111L	GGTCCTTTCCAGC		55	0	0.00	60	0	0		1752	2	0	0				
SMARCA5	8467	bcgsc.ca	37	4	144445568	144445571	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	AGAA	AGAA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	SMARCA5	NM_003601	exon4	c.468_471del	p.156_157del	ATTAACAGAAAGC		240	0	0.00	371	0	0		73		29	0	0.00			
CDC23	8697	broad.mit.edu	37	5	137524750	137524750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	CDC23	NM_004661	exon16	c.T1711C	p.F571L	GGAAAAAGGGAGC		106	4	0.04	142	1	0.0070422535		46		56	0	0.00			
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	158158144	158158144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_024007	exon11	c.A1058G	p.D353G	CCATAATCGATGG		49	21	0.43	80	0	0				1	1	1.00			
ABT1	29777	bcgsc.ca	37	6	26598339	26598339	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ABT1	NM_013375	exon2	c.438+1G>T	.	CTCAAGGTGAGAA		100	0	0.00	105	0	0		39		0	0				
REV3L	5980	bcgsc.ca	37	6	111804004	111804004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	REV3L	NM_002912	exon1	c.G88T	p.A30S	CAGGGGCCTGGGT		119	0	0.00	75	0	0		386		0	0				
.	100287768	bcgsc.ca	37	6	121102580	121102580	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	.	.	.	.	TCCAAGCCCTTTC		21	0	0.00	23	0	0				0	0				
GRID2IP	392862	hgsc.bcm.edu	37	7	6547896	6547901	+	In_Frame_Del	DEL	CTGAGC	CTGAGC	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	CTGAGC	CTGAGC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001145118	exon13	c.2260_2265del	p.754_755del	GGGGGGCTGAGCG		72	0	0.00	38	0	0				0	0				
SP4	6671	broad.mit.edu	37	7	21468306	21468306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	SP4,colon,carcinoma,0,1	SP4	NM_003112	exon2	c.G19A	p.E7K	AAGAAGGAGGAGG		39	5	0.13	55	1	0.0181818182		91	1	0	0				
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu	37	7	23286485	23286486	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	TC	TC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_002510	exon1	c.8_9del	p.3_3del	GGAATGTCTCTAC		88	21	0.24	84	0	0				10	0	0.00			
NYAP1	222950	bcgsc.ca	37	7	100086782	100086782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_173564	exon4	c.C1438T	p.P480S	GGTCCACCCCTGG		84	0	0.00	54	0	0				3	0	0.00			
ZAN	7455	broad.mit.edu	37	7	100331729	100331729	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ZAN	.	.	.	.	AATAAAAGGAGTC		161	4	0.02	148	0	0		658		0	0				
WDR60	55112	hgsc.bcm.edu	37	7	158704304	158704304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_018051	exon12	c.G1524T	p.L508F	TCTCTTGGATCTA		114	5	0.04	132	0	0				4	0	0.00			
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	77775665	77775665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_024721	exon11	c.G9715A	p.D3239N	CATGTCGATCCTA		109	28	0.26	93	0	0				0	0				
LRRCC1	85444	broad.mit.edu	37	8	86019547	86019547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	LRRCC1,colon,carcinoma,0,2	LRRCC1	NM_033402	exon1	c.C17T	p.A6V	CGGCGGCGGTGGT		169	7	0.04	68	0	0		212	2	2	0	0.00			
SCRIB	23513	bcgsc.ca	37	8	144893427	144893427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	SCRIB,larynx,carcinoma,0,1	SCRIB	NM_015356	exon10	c.G995T	p.G332V	CAGCCCCCGATCT		140	0	0.00	71	0	0		192	1	66	0	0.00			
SMARCA2	6595	bcgsc.ca	37	9	2115838	2115838	+	Missense_Mutation	SNP	A	A	C	rs281875240	alternate_allele	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	SMARCA2	NM_139045	exon25	c.A3473C	p.D1158A	CCCAAGACCGAGC		229	0	0.00	199	0	0		313		27	0	0.00			
CYTB	0	hgsc.bcm.edu;broad.mit.edu	37	MT	15657	15657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	ENST00000361789	exon1	c.T911C	p.I304T	CAATAATCCCCAT		35	19	0.54	17	0	0				0	0				
RBMXL3	139804	broad.mit.edu	37	X	114425196	114425196	+	Missense_Mutation	SNP	G	G	A	rs12399211	bycluster;by1000genomes	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	RBMXL3	NM_001145346	exon1	c.G1192A	p.D398N	TCGCCCGACGCCC		85	6	0.07	34	0	0		83		0	0				
SELO	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	50655406	50655406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	.	.	.	.	GAGCCCGGCTGGA		47	13	0.28	24	0	0				38	8	0.21			
