Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PADI4	23569	broad.mit.edu	37	1	17690071	17690071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	PADI4	NM_012387	exon16	c.G1813A	p.V605I	GGGCCCGTCATCA		199	4	0.02	212	0	0		70		3	0	0.00			
HSPG2	3339	mdanderson.org	37	1	22149853	22149853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_005529	exon97	c.C13132A	p.H4378N	CGCGGTGCTGCAG		26	3	0.12	33	0	0				136	0	0.00			
BAI2	576	broad.mit.edu	37	1	32222329	32222329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	BAI2	NM_001703	exon4	c.C109A	p.P37T	CACTGGGGGCGGG		216	4	0.02	195	0	0		128		1	0	0.00			
C1orf173	127254	mdanderson.org	37	1	75086440	75086440	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001002912	exon8	c.C978A	p.Y326X	GCCTTTGTAGACA		123	5	0.04	130	0	0				0	0				
LHX8	431707	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	75602877	75602877	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001001933	exon4	c.C198A	p.S66S	GGGCTCCGGCTGC		255	18	0.07	273	0	0				13	1	0.08			
AMY1A	278	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	104297234	104297234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	AMY1C,NS,carcinoma,0,1	AMY1A	NM_001008221	exon7	c.G992C	p.W331S	CCTTCTGGGATGC		864	20	0.02	937	0	0		2	1	0	0				
EPS8L3	79574	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	110300123	110300123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_139053	exon11	c.C952T	p.L318F	TGAAGAGGATGTG		119	11	0.09	123	0	0				0	0				
NBPF10	100132406	broad.mit.edu	37	1	145293269	145293269	+	Splice_Site	SNP	G	G	A	rs75226570		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	NBPF10	.	.	.	.	ACAACAGTAAGTT		25	4	0.16	36	0	0		221		0	0				
APOA2	336	hgsc.bcm.edu;bcgsc.ca	37	1	161192313	161192313	+	Splice_Site	SNP	C	C	T	rs76162486	bycluster	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001643	exon5	c.186-1G>A	.	TAAGACCTGGATA		161	8	0.05	196	0	0				0	0				
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175328773	175328773	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_003285	exon15	c.C2949T	p.Y983Y	AATGACGTAGTTC		113	11	0.10	132	0	0				0	0				
C1orf35	79169	mdanderson.org	37	1	228288913	228288913	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_024319	exon8	c.C711A	p.C237X	CTTACAGCAGGGG		44	3	0.07	65	0	0				102	0	0.00			
OBSCN	84033	hgsc.bcm.edu	37	1	228503691	228503691	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	OBSCN,colon,carcinoma,0,1	OBSCN	NM_001271223	exon61	c.16026delC	p.N5342fs	GAGAACGCCGAGG		151	10	0.07	187	0	0		2142		0	0				
OBSCN	84033	bcgsc.ca	37	1	228503692	228503692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	OBSCN	NM_001271223	exon61	c.C16028A	p.A5343D	AGAACGCCGAGGT		154	12	0.08	187	0	0		2142		0	0				
GNG4	2786	broad.mit.edu	37	1	235747114	235747114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	GNG4	NM_001098721	exon3	c.A25G	p.S9G	TGGTGCTGTTATT		113	3	0.03	109	1	0.0091743119		18		17	0	0.00			
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235872530	235872530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_000081	exon44	c.G10004A	p.R3335H	AAAAGACGAGGAT		210	27	0.13	268	0	0				13	3	0.23			
ANKRD30A	91074	broad.mit.edu;mdanderson.org	37	10	37442507	37442507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	ANKRD30A	NM_052997	exon13	c.G1547A	p.C516Y	GTCTCTGTGAGAC		567	18	0.03	791	1	0.0012642225		448		0	0				
NFKB2	4791	broad.mit.edu;mdanderson.org	37	10	104159438	104159438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	NFKB2	NM_002502	exon14	c.C1432T	p.R478C	GGACAGCGCCACC		32	4	0.13	43	0	0		48		175	67	0.38			
TAF5	6877	broad.mit.edu	37	10	105145120	105145120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	TAF5	NM_006951	exon8	c.A1702G	p.R568G	ACTGTTAGATTGT		70	3	0.04	92	0	0		47		29	0	0.00			
SHOC2	8036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112724174	112724174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_007373	exon2	c.T58C	p.S20P	GTACCATCAGCCA		73	27	0.37	108	0	0				37	19	0.51			
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123954584	123954584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_206862	exon8	c.C5864A	p.T1955N	TTGAGACCCCGGA		63	14	0.22	58	0	0				23	13	0.57			
HRAS	3265	ucsc.edu	37	11	534295	534295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	HRAS	NM_001130442	exon2	c.G28A	p.G10S	CGGCGCCCACCAC		53	3	0.06	54	0	0		1232		69	7	0.10			
EFCAB4A	283229	mdanderson.org	37	11	830251	830251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_173584	exon6	c.C607T	p.R203C	CGAAGGCGCGAGA		40	3	0.08	36	0	0				4	0	0.00			
SPON1	10418	broad.mit.edu	37	11	14101781	14101782	+	RNA	INS	-	-	T	rs11432678	bycluster;by1000genomes	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	SPON1	.	.	.	.	TTTTTTCTTTTTT		6	2	0.33	5	0	0		65		0	0				
ZDHHC5	25921	broad.mit.edu	37	11	57466827	57466827	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	ZDHHC5,NS,carcinoma,0,1	ZDHHC5	NM_015457	exon11	c.1919delA	p.Q640fs	GCAGCCAAAAAGC		115	7	0.06	118	0	0		49	1	409	0	0.00			
CNTF	1270	broad.mit.edu	37	11	58391741	58391741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	CNTF	NM_000614	exon2	c.G349A	p.A117T	CAAGTCGCTGCCT		167	5	0.03	178	0	0		22		0	0				
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65310634	65310634	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001130144	exon18	c.C2538T	p.G846G	GTAGGAGCCATTG		126	8	0.06	106	0	0				33	2	0.06			
APOA1	335	hgsc.bcm.edu	37	11	116708059	116708059	+	Splice_Site	SNP	A	A	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	APOA1,NS,carcinoma,-2,1	APOA1	NM_000039	exon3	c.43+2T>G	.	ACACCTACCCGTC		137	14	0.10	121	1	0.0082644628		-2	1	0	0				
TIRAP	114609	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	126162546	126162546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	TIRAP_ENST00000392678,NS,carcinoma,+1,3	TIRAP	NM_148910	exon5	c.G242A	p.R81H	GTAGTCGCTGGAG		66	6	0.09	87	0	0		37	3	4	1	0.25			
KLRC4	8302	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	10562068	10562068	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	KLRC4,NS,carcinoma,-1,1	KLRC4	NM_013431	exon1	c.A107C	p.Q36P	ATTTCCTGTTTGG		538	17	0.03	246	0	0		23	1	1	0	0.00			
DDX11	1663	ucsc.edu	37	12	31254052	31254052	+	Missense_Mutation	SNP	G	G	C	rs201027785	by1000genomes	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	DDX11	NM_030653	exon20	c.G2040C	p.E680D	AAGAGAGCTGCCT		121	1	0.01	88	0	0		188		167	22	0.13			
.	0	broad.mit.edu	37	12	59414689	59414689	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	TTGAGTAACAAAT		6	2	0.33	11	0	0				0	0				
CUX2	23316	mdanderson.org	37	12	111779749	111779749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_015267	exon21	c.G3551T	p.R1184L	CACTGCGGAAGGC		124	5	0.04	164	0	0				6	0	0.00			
SH2B3	10019	hgsc.bcm.edu	37	12	111886037	111886037	+	Silent	SNP	G	G	T	rs369151728	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	SH2B3,rectum,carcinoma,0,1	SH2B3	NM_005475	exon8	c.G1659T	p.S553S	GGACTCGGACTAC		71	3	0.04	112	0	0		0	1	60	0	0.00			
TMEM132D	121256	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	130184360	130184360	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	TMEM132D	NM_133448	exon2	c.G963A	p.T321T	CCTCAACGTGAAG		197	18	0.09	234	1	0.0042735043		299		1	1	1.00			
GPC6	10082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	94680124	94680124	+	Missense_Mutation	SNP	G	G	C	rs201329039	by1000genomes;alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_005708	exon4	c.G853C	p.D285H	GACCTCGACACAG		70	8	0.11	98	0	0				2	0	0.00			
FARP1	10160	broad.mit.edu	37	13	99083499	99083499	+	Missense_Mutation	SNP	A	A	C	rs201729016		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	FARP1	NM_005766	exon18	c.A2108C	p.H703P	AACACCACCCGCC		93	40	0.43	104	27	0.2596153846		207		48	10	0.21			
SETD3	84193	hgsc.bcm.edu;broad.mit.edu	37	14	99879294	99879294	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	SETD3	NM_199123	exon8	c.844delG	p.G282fs	CAGGCCGTTGGTG		154	15	0.10	150	0	0		56		90	1	0.01			
AMN	81693	mdanderson.org	37	14	103389038	103389038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_030943	exon1	c.G13T	p.G5C	GTCCTGGGCCGGG		23	3	0.13	37	0	0				1	0	0.00			
.	0	broad.mit.edu;mdanderson.org	37	14	106829753	106829753	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	CTCCAGCCCCTTC		185	16	0.09	216	0	0				529	11	0.02			
MAPK6	5597	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52353621	52353621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	MAPK6	NM_002748	exon5	c.C991T	p.P331S	AGCCATCCTTTTC		176	47	0.27	230	1	0.0043478261		70		56	28	0.50			
DENND4A	10260	mdanderson.org	37	15	66021978	66021978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_005848	exon10	c.C1205A	p.P402H	TTTTCAGGGCCTA		35	3	0.09	62	0	0				4	0	0.00			
SMAD6	4091	broad.mit.edu;mdanderson.org	37	15	67073787	67073787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	SMAD6	NM_005585	exon4	c.G1405T	p.A469S	AGCTTCGCCAAGG		28	3	0.11	27	0	0		14		30	0	0.00			
HCN4	10021	ucsc.edu	37	15	73617654	73617654	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	HCN4	NM_005477	exon5	c.C1722T	p.S574S	GGGCTCGCTTAGC		58	4	0.07	87	0	0		150		1	0	0.00			
STRA6	64220	broad.mit.edu	37	15	74476264	74476264	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	STRA6	NM_001199042	exon14	c.T1350C	p.H450H	GGAGGGATGGGGA		89	14	0.16	97	13	0.1340206186		66		12	0	0.00			
TARSL2	123283	mdanderson.org	37	15	102264363	102264363	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_152334	exon1	c.C228A	p.A76A	CTCCTCGGCGAGG		11	2	0.18	13	0	0				4	0	0.00			
RHBDF1	64285	mdanderson.org	37	16	110496	110496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_022450	exon12	c.C1599A	p.S533R	TGGGGCGCTGGGA		14	2	0.14	14	0	0				64	0	0.00			
TELO2	9894	mdanderson.org	37	16	1559886	1559886	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_016111	exon21	c.G2463A	p.L821L	GGCCCTGCTGCTT		46	3	0.07	62	0	0				156	0	0.00			
CLN3	1201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28488916	28488916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001042432	exon16	c.G1238A	p.C413Y	GAGATGCAGGTGG		79	5	0.06	113	0	0				260	42	0.16			
RABEP2	79874	broad.mit.edu	37	16	28935747	28935747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	RABEP2	NM_024816	exon2	c.C251T	p.A84V	AGCGAGGCCACCT		69	3	0.04	60	0	0		48		22	0	0.00			
ZNF319	57567	mdanderson.org	37	16	58031252	58031252	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_020807	exon2	c.G918A	p.P306P	CGTGCACGGGTGC		26	3	0.12	43	0	0				4	0	0.00			
RLTPR	146206	mdanderson.org	37	16	67681206	67681206	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001013838	exon10	c.T692A	p.L231H	AGAGCCTTGAGGT		86	4	0.05	138	0	0				5	0	0.00			
CIRH1A	84916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69177275	69177275	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_032830	exon6	c.T721A	p.S241T	GTGCAGTCCATTG		95	10	0.11	135	0	0				164	39	0.24			
BCAR1	9564	mdanderson.org	37	16	75276786	75276786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001170714	exon3	c.C353T	p.A118V	GGCCCTGCTGGCT		25	3	0.12	26	0	0				27	0	0.00			
ZC3H18	124245	mdanderson.org	37	16	88664702	88664702	+	Nonsense_Mutation	SNP	G	G	T	rs372349936	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_144604	exon4	c.G805T	p.G269X	CCTCTCGGACCTC		44	3	0.07	69	0	0				70	0	0.00			
PIK3R5	23533	mdanderson.org	37	17	8808189	8808189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001142633	exon5	c.C317T	p.A106V	GTGCTGGCTGCCT		37	3	0.08	50	0	0				13	0	0.00			
FBXW10	10517	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	18681824	18681824	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	FBXW10	NM_001267585	exon14	c.T2372A	p.L791X	GACAATTGGAAAC		313	28	0.09	426	0	0		82		0	0				
SLC5A10	125206	mdanderson.org	37	17	18880197	18880197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001270649	exon9	c.G877T	p.D293Y	GCCCGGGACCTGA		36	3	0.08	40	0	0				2	0	0.00			
NOS2	4843	bcgsc.ca	37	17	26125770	26125770	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	NOS2	NM_000625	exon2	c.A66G	p.K22K	GATGTCTTTTTCC		165	6	0.04	188	0	0		113		0	0				
C17orf96	100170841	mdanderson.org	37	17	36830710	36830710	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001130677	exon1	c.G39T	p.P13P	GGACGCCGGCACT		18	3	0.17	18	0	0				9	0	0.00			
CDC27	996	hgsc.bcm.edu	37	17	45216115	45216115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon13	c.A1712T	p.N571I	GGCGAATTTTTAT		74	4	0.05	54	0	0		0	2	84	0	0.00			
ZNF407	55628	mdanderson.org	37	18	72775889	72775889	+	Missense_Mutation	SNP	G	G	T	rs201021175	by1000genomes;alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_017757	exon8	c.G6212T	p.R2071L	AGGAGCGGGCACA		38	3	0.08	63	0	0				11	0	0.00			
DENND1C	79958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6476886	6476886	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_024898	exon10	c.C660A	p.T220T	GCTGGCGGTGAGC		50	6	0.12	60	0	0				11	0	0.00			
MCOLN1	57192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	7593728	7593728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_020533	exon9	c.C1006T	p.R336W	ATGTGGCGGCAGC		225	10	0.04	181	0	0				111	10	0.09			
ZNF559	84527	broad.mit.edu	37	19	9452580	9452580	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	ZNF559	NM_001202406	exon6	c.A645G	p.Q215Q	TAATCAATGTGAA		98	3	0.03	140	0	0		77		67	1	0.01			
HOOK2	29911	mdanderson.org	37	19	12878672	12878672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001100176	exon13	c.C1261A	p.L421M	AGCGCAGCTCCTC		35	3	0.09	37	0	0				23	0	0.00			
ZNF506	440515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	19906184	19906184	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001099269	exon4	c.A512C	p.K171T	AAAGATTTTTTTC		146	10	0.07	174	0	0				23	7	0.30			
CAPNS1	826	broad.mit.edu	37	19	36632054	36632054	+	Silent	SNP	C	C	T	rs17879825		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	CAPNS1	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		79	7	0.09	123	1	0.0081300813		19		2	0	0.00			
.	171427	bcgsc.ca	37	19	41324703	41324703	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	TGTCCTCGGGCGC		98	12	0.12	139	0	0				7	0	0.00			
C19orf69	100170765	mdanderson.org	37	19	41949189	41949189	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001130514	exon1	c.A115T	p.T39S	CTCAGGACTGCAG		37	3	0.08	45	0	0				0	0				
CCDC8	83987	mdanderson.org	37	19	46915880	46915880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	CCDC8,NS,carcinoma,+1,1	CCDC8	NM_032040	exon1	c.C188A	p.T63N	TGCGGGGTGCTCT		28	3	0.11	31	0	0		1	1	20	0	0.00			
ZNF614	80110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52519423	52519423	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_025040	exon5	c.T1428C	p.C476C	TGTATGACATCTC		76	8	0.11	101	0	0				32	10	0.31			
NLRP12	91662	bcgsc.ca	37	19	54313068	54313068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	NLRP12	NM_144687	exon3	c.C1845A	p.Y615X	CAAGCAGCTGAAG		117	6	0.05	144	1	0.0069444444		236		138	0	0.00			
KIR2DL1	3802	mdanderson.org	37	19	55285080	55285080	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_014218	exon3	c.C366A	p.I122I	CGTGATCATAGGT		31	3	0.10	31	0	0				0	0				
KIR3DL1	3811	broad.mit.edu;mdanderson.org	37	19	55329817	55329817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	KIR3DL1	NM_013289	exon3	c.C118T	p.P40S	GTGGTGCCTCGAG		38	3	0.08	51	0	0		174		1	0	0.00			
TMEM86B	255043	mdanderson.org	37	19	55739752	55739752	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_173804	exon2	c.C105A	p.Y35X	GCAGAAGTACACG		35	3	0.09	56	0	0				8	0	0.00			
NAT14	57106	bcgsc.ca	37	19	55997853	55997853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	NAT14	NM_020378	exon3	c.G151A	p.A51T	GCGGCGGCCAGCA		17	4	0.24	20	0	0		11		37	0	0.00			
TAF1B	9014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	10016027	10016027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_005680	exon7	c.T587A	p.V196D	ATGGAGTTGAATA		117	9	0.08	123	0	0				80	13	0.16			
GDF7	151449	mdanderson.org	37	2	20870822	20870822	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_182828	exon2	c.G990T	p.A330A	GACAGCGCAGGGC		28	2	0.07	23	0	0				0	0				
ALK	238	mdanderson.org	37	2	29754982	29754982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_004304	exon4	c.G953A	p.G318D	AAGGAGCCTGGAA		69	4	0.06	79	0	0				0	0				
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61566736	61566736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_014709	exon17	c.A2581G	p.T861A	ACAAAGTATTTCC		530	68	0.13	570	0	0				8	2	0.25			
ETAA1	54465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	67630985	67630985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_019002	exon5	c.C1171T	p.P391S	AGTGAACCTTTTG		212	28	0.13	328	0	0				16	3	0.19			
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	97475063	97475063	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_020184	exon7	c.C2137G	p.R713G	ATCACTCGGCAGC		112	6	0.05	112	0	0				56	3	0.05			
GPR45	11250	broad.mit.edu;mdanderson.org	37	2	105858882	105858882	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	GPR45,medulla,primitive_neuroectodermal_tumour-medulloblastoma,+2,1	GPR45	NM_007227	exon1	c.C567T	p.L189L	GGAGCTCCCCGCT		41	3	0.07	61	0	0		73	1	0	0				
ALPPL2	251	mdanderson.org	37	2	233274571	233274571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_031313	exon11	c.A1588T	p.T530S	ACGGCCACTGCTC		26	3	0.12	21	0	0				381	1	0.00			
ANO7	50636	mdanderson.org	37	2	242149033	242149033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001001891	exon13	c.G1504T	p.V502L	GGCTCTGTGGTGA		42	3	0.07	59	0	0				0	0				
.	284764	bcgsc.ca	37	20	4004691	4004691	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	ATGATGCGGCTCT		85	12	0.14	76	0	0				77	61	0.79			
.	284764	bcgsc.ca	37	20	4004726	4004726	+	RNA	SNP	T	T	C	rs57328861	byfrequency	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	CGCGAATTGACCG		81	13	0.16	71	0	0				35	20	0.57			
.	284764	bcgsc.ca	37	20	4004729	4004729	+	RNA	SNP	A	A	G	rs11553241		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	GAATTGACCGAGG		81	14	0.17	71	0	0				35	27	0.77			
.	284764	bcgsc.ca	37	20	4004848	4004848	+	RNA	SNP	T	T	C	rs11553193	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	CCCAGATGCCATG		135	17	0.13	97	0	0				30	23	0.77			
.	284764	bcgsc.ca	37	20	4004916	4004916	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	CCCTGGATTCTGC		114	11	0.10	102	0	0				27	24	0.89			
.	284764	bcgsc.ca	37	20	4004925	4004925	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	CTGCCCACATGGA		105	11	0.10	103	0	0				15	12	0.80			
.	284764	bcgsc.ca	37	20	4004928	4004928	+	RNA	SNP	T	T	C	rs11553211	bycluster	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	CCCACATGGACCC		105	12	0.11	103	1	0.0097087379				18	16	0.89			
.	284764	bcgsc.ca	37	20	4004986	4004986	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	GAAGCTCATCAAG		67	6	0.09	71	0	0				16	13	0.81			
ESF1	51575	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	13753234	13753234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	ESF1	NM_001276380	exon5	c.A1177G	p.R393G	TCATCCTCTCCTT		95	6	0.06	133	0	0		77		79	0	0.00			
SLC19A1	6573	broad.mit.edu;ucsc.edu	37	21	46945796	46945796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	SLC19A1	NM_001205206	exon5	c.G1228A	p.V410I	TCTTGACGATGGT		56	5	0.09	71	0	0		53		29	7	0.24			
TPST2	8459	broad.mit.edu	37	22	26937214	26937214	+	Missense_Mutation	SNP	A	A	C	rs200758682		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	TPST2,NS,carcinoma,0,1	TPST2	NM_001008566	exon3	c.T383G	p.V128G	TCCGTCACCCCCG		55	13	0.24	68	13	0.1911764706		23	1	344	58	0.17			
DNAJB7	150353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41257722	41257722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_145174	exon1	c.C277A	p.P93T	CATCTGGCTTATG		159	16	0.10	163	0	0				15	1	0.07			
DENND6B	414918	mdanderson.org	37	22	50756391	50756391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001001794	exon4	c.C318A	p.S106R	CCAGGGGCTCCTC		33	3	0.09	26	0	0				3	0	0.00			
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	9495475	9495475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	SETD5_ENST00000402198,NS,carcinoma,+1,2	SETD5_ENST00000402198	NM_001080517	exon17	c.C2399A	p.P800H	CTGTACCCCAAGA		245	11	0.04	236	0	0		1	2	116	10	0.09			
FLNB	2317	broad.mit.edu	37	3	58116558	58116558	+	Missense_Mutation	SNP	G	G	A	rs199590811	bycluster;by1000genomes	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	FLNB	NM_001457	exon25	c.G4313A	p.R1438H	GAGCCCGTGTCCT		241	4	0.02	215	0	0		430		229	0	0.00			
LSAMP	4045	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	115738431	115738431	+	Missense_Mutation	SNP	C	C	T	rs143751711		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	LSAMP,NS,carcinoma,0,1	LSAMP	NM_002338	exon3	c.G445A	p.V149M	GAGTCACGTTGCT		76	6	0.08	118	0	0		62	1	8	2	0.25			
P2RY13	53829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151045875	151045875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_176894	exon2	c.A969C	p.K323N	TGTGAATTTTTTA		99	21	0.21	165	0	0				1	0	0.00			
NSUN7	79730	mdanderson.org	37	4	40778207	40778207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_024677	exon7	c.G967A	p.V323M	GTATTTGTGTGTG		55	4	0.07	72	0	0				8	1	0.13			
PAICS	10606	broad.mit.edu	37	4	57316793	57316793	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	PAICS	NM_001079525	exon7	c.G717T	p.R239R	TTATCGGGACCTC		56	3	0.05	81	0	0		21		761	0	0.00			
ALB	213	hgsc.bcm.edu;bcgsc.ca	37	4	74283804	74283804	+	Splice_Site	SNP	G	G	T	rs77256214	bycluster	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_000477	exon12	c.1429-1G>T	.	TCTTTAGCTATCC		87	17	0.20	107	0	0				0	0				
IRX4	50805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1879733	1879733	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	IRX4,colon,carcinoma,-1,1	IRX4	NM_016358	exon4	c.G621A	p.T207T	CGGCCACGTCATC		111	11	0.10	117	0	0		-1	1	61	7	0.11			
IRX1	79192	broad.mit.edu	37	5	3600085	3600085	+	Silent	SNP	C	C	T	rs369355630		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	IRX1	NM_024337	exon2	c.C1023T	p.P341P	CCACCCCGGCGCG		89	7	0.08	120	1	0.0083333333		106		11	0	0.00			
CDH9	1007	broad.mit.edu	37	5	26881347	26881347	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	CDH9	NM_016279	exon12	c.C2268A	p.L756L	AGCTGTGAGAGAT		139	6	0.04	136	0	0		305		0	0				
.	0	broad.mit.edu	37	5	33162312	33162312	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	TGGCACCAGCGCC		47	3	0.06	55	0	0				787	733	0.93			
.	0	broad.mit.edu	37	5	33162430	33162430	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	GTGTGCAGGGAAG		55	4	0.07	57	0	0				492	475	0.97			
.	0	broad.mit.edu	37	5	33162435	33162435	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	CAGGGAAGTAACA		56	5	0.09	54	0	0				42	35	0.83			
NNT	23530	broad.mit.edu	37	5	43613188	43613189	+	Frame_Shift_Ins	INS	-	-	G	rs149285174	by1000genomes	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	NNT,adrenal_gland,adrenal_cortical_adenoma,0,1	NNT	NM_012343	exon3	c.330_331insG	p.G110fs	GGCAGGTGCCCAA		134	15	0.11	151	0	0		92	1	12	0	0.00			
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140735836	140735836	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_018917	exon1	c.C1069G	p.Q357E	TCAGTCCAGGAAT		73	12	0.16	114	0	0				2	0	0.00			
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154280995	154280995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_015465	exon21	c.G2918A	p.C973Y	TGAAAACACAGCT		157	19	0.12	222	0	0				45	9	0.20			
GCNT2	2651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	10586756	10586756	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_145655	exon1	c.C534G	p.V178V	CCTTGTCGCCTCT		149	9	0.06	146	0	0				40	5	0.13			
HIST1H2BF	8343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	26200084	26200084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_003522	exon1	c.C298T	p.R100C	GCCGTACGCCTGC		86	5	0.06	75	0	0				0	0				
HLA-H	3136	hgsc.bcm.edu	37	6	29855800	29855800	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	ENSG00000196306,right_lower_lobe,carcinoma,0,3	ENSG00000196306	.	.	.	.	TTCATCTCCGTCG		107	10	0.09	82	2	0.0243902439		0	3	176	153	0.87			
HLA-J	3137	hgsc.bcm.edu	37	6	29977011	29977011	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	GAGCCCATGGGGG		87	18	0.21	108	0	0				1	0	0.00			
MUC21	394263	mdanderson.org	37	6	30955233	30955233	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001010909	exon2	c.A1281G	p.T427T	CAGCACAACCTCC		98	5	0.05	63	0	0				13	0	0.00			
FOXP4	116113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41555161	41555161	+	Silent	SNP	G	G	C	rs375722090	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	FOXP4	NM_001012426	exon7	c.G783C	p.S261S	TACCTCGTTTGCC		286	10	0.03	167	1	0.005988024		83		110	11	0.10	rescued with RNA-seq		
DNPH1	10591	mdanderson.org	37	6	43194088	43194088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_199184	exon2	c.T242C	p.L81P	CACTCCAGGTCCT		39	3	0.08	40	0	0				183	0	0.00			
UBE3D	90025	broad.mit.edu	37	6	83732269	83732269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_198920	exon7	c.T749A	p.V250D	CTCTGGACAAACC		223	8	0.04	295	0	0				12	0	0.00			
GPR6	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110301311	110301311	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	GPR6,caecum,carcinoma,+1,1	GPR6	NM_005284	exon1	c.C996T	p.R332R	CTTCCGCAACCAG		84	8	0.10	123	1	0.0081300813		46	1	1	0	0.00			
SOGA3	387104	broad.mit.edu;mdanderson.org	37	6	127837119	127837119	+	Missense_Mutation	SNP	G	G	C	rs200377274		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001012279	exon2	c.C641G	p.A214G	GGGGAGGCCCCCT		32	10	0.31	22	3	0.1363636364				0	0				
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129204396	129204396	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_000426	exon1	c.G6A	p.P2P	GATGCCGGGAGCC		59	8	0.14	40	0	0				0	0				
LAMA2	3908	mdanderson.org	37	6	129691055	129691055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001079823	exon34	c.C4879T	p.R1627W	CCTCAGCGGGCCC		34	3	0.09	70	0	0				9	0	0.00			
HOXA3	3200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	27150188	27150188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_030661	exon2	c.C72A	p.F24L	ATAAGCGAACCCG		161	17	0.11	190	0	0				1	0	0.00			
GLI3	2737	broad.mit.edu;mdanderson.org	37	7	42005961	42005961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	GLI3	NM_000168	exon15	c.C2710T	p.R904C	AGCGGCGCGAGGC		31	3	0.10	36	0	0		312		1	0	0.00			
EGFR	1956	mdanderson.org	37	7	55223545	55223545	+	Silent	SNP	C	C	T	rs182002674	bycluster;by1000genomes	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_201283	exon8	c.C912T	p.H304H	AGATCACGGCTCG		80	4	0.05	75	0	0	0			2	0	0.00			
AUTS2	26053	broad.mit.edu;mdanderson.org	37	7	70249953	70249953	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	AUTS2	NM_015570	exon16	c.T2172C	p.P724P	GACCCCTTTTGGG		128	5	0.04	121	0	0		173		46	0	0.00			
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	82455963	82455963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_014510	exon18	c.C14357T	p.T4786I	TCCAGTGTTTTCT		83	9	0.11	120	0	0				0	0				
AKAP9	10142	broad.mit.edu	37	7	91715587	91715587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	AKAP9	NM_005751	exon37	c.G9070T	p.G3024C	TGGCGAGGTGAAC		212	4	0.02	263	0	0		788		19	0	0.00			
DUS4L	11062	broad.mit.edu	37	7	107207563	107207563	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	DUS4L	NM_001270419	exon3	c.A48G	p.K16K	AAAAAAAGATCCC		136	4	0.03	136	0	0		27		26	0	0.00			
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	117368303	117368303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_033427	exon17	c.T3895C	p.S1299P	AGGGGGAGGGCGC		140	7	0.05	155	0	0				0	0				
C7orf49	78996	broad.mit.edu;mdanderson.org	37	7	134851458	134851458	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	C7orf49	NM_024033	exon4	c.A379C	p.R127R	CCGGCCTCTGGGA		42	4	0.10	53	0	0		24		97	15	0.15			
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	149483197	149483197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_198455	exon23	c.G3265T	p.G1089W	GTGAATGGGGTGA		99	14	0.14	103	0	0				0	0				
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	3889549	3889549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_033225	exon4	c.T488C	p.I163T	TCTCCTATGTTGA		104	6	0.06	171	0	0				0	0				
GPR124	25960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	37689047	37689047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_032777	exon8	c.G1039A	p.E347K	GTGCTGGAGACCT		53	10	0.19	91	0	0				21	2	0.10			
CYP7A1	1581	mdanderson.org	37	8	59409620	59409620	+	Missense_Mutation	SNP	G	G	T	rs201114135	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	CYP7A1,colon,carcinoma,0,1	CYP7A1	NM_000780	exon3	c.C451A	p.R151S	TGATACGTTGGAG		12	2	0.17	17	0	0		0	1	0	0				
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu	37	9	20414311	20414319	+	In_Frame_Del	DEL	CTGCTGCTG	CTGCTGCTG	-	rs373338988	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	CTGCTGCTG	CTGCTGCTG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	MLLT3,caecum,carcinoma,0,1	MLLT3	NM_004529	exon5	c.526_534del	p.176_178del	CTGCTACTGCTGC		63	13	0.21	85	0	0		125		0	0				
KIF24	347240	broad.mit.edu	37	9	34310903	34310903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	KIF24	NM_194313	exon2	c.C442A	p.H148N	TTGTATGGTACTG		223	4	0.02	279	0	0		64		5	0	0.00			
ANKS6	203286	mdanderson.org	37	9	101498829	101498829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_173551	exon15	c.G2588T	p.R863M	GGGGCCCTGGTGT		47	3	0.06	73	0	0				20	0	0.00			
.	0	bcgsc.ca	37	9	120845344	120845344	+	RNA	SNP	A	A	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	GGTCTCAGTTCTT		65	9	0.14	75	0	0				48	44	0.92			
.	0	bcgsc.ca	37	9	120845358	120845358	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	AAGTTTGCCTTTG		60	8	0.13	83	0	0				70	61	0.87			
ZBTB43	23099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129596183	129596183	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001135776	exon2	c.G1395A	p.E465E	AACTGAGGCTAAC		143	58	0.41	155	0	0				13	7	0.54			
ARSF	416	broad.mit.edu	37	X	3019220	3019220	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	ARSF	NM_004042	exon8	c.C1060T	p.R354X	GCTAGGCGAGGGC		488	5	0.01	297	0	0		97		0	0				
SCML2	10389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	18276363	18276374	+	In_Frame_Del	DEL	ACAGACTTGAGA	ACAGACTTGAGA	-	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	ACAGACTTGAGA	ACAGACTTGAGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	SCML2	NM_006089	exon10	c.1070_1075del	p.357_359del	ATAGACACAGACT		243	22	0.09	169	0	0		81		36	0	0.00			
MAGEB4	4115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30261215	30261215	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_002367	exon1	c.T963C	p.V321V	CAGAGTTGCAGCC		107	14	0.13	84	0	0				0	0				
NR0B1	190	broad.mit.edu;mdanderson.org	37	X	30326687	30326687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	NR0B1	NM_000475	exon1	c.C794G	p.T265R	CGCAGCGTCTTCA		44	3	0.07	24	0	0		61		4	0	0.00			
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu	37	X	53574783	53574785	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	GTG	GTG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	HUWE1	NM_031407	exon68	c.10486_10488del	p.3496_3496del	GCGGCAGTGGTGG		162	11	0.07	95	0	0		724		502	0	0.00			
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71829496	71829496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_002637	exon23	c.C2584A	p.P862T	CTCGAGGTTCTGG		159	42	0.26	121	0	0				111	51	0.46			
ATRX	546	broad.mit.edu	37	X	76855029	76855029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	ATRX	NM_000489	exon25	c.A5807G	p.K1936R	TTCCCCTTTTTCC		385	5	0.01	302	0	0		833		22	0	0.00			
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109695094	109695094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_020769	exon3	c.G1249A	p.G417R	CTAATGGGAGCCC		76	9	0.12	44	0	0				0	0				
XIAP	331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123040895	123040895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001204401	exon7	c.G1358T	p.C453F	AAATCTGTATGGA		202	35	0.17	155	0	0				25	6	0.24			
MAGEA10-MAGEA5	0	broad.mit.edu	37	X	151296336	151296337	+	RNA	INS	-	-	A	rs5904333	bycluster;byfrequency	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	ATTCCAGAAAAAA		13	6	0.46	11	0	0				0	0				
TXNRD1	7296	hgsc.bcm.edu;broad.mit.edu	37	12	104709560	104709560	+	Missense_Mutation	SNP	G	G	A	rs370602169		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	GGTCTCGGAGGAA		95	4	0.04	140	0	0				242	18	0.07			
