Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
AJAP1	55966	mdanderson.org	37	1	4772463	4772463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_018836	exon2	c.C533T	p.T178I	CAGAGACTGAGTT		44	3	0.07	53	0	0				4	0	0.00			
GRHL3	57822	broad.mit.edu	37	1	24666205	24666205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	GRHL3,NS,carcinoma,-2,1	GRHL3	NM_021180	exon8	c.G1015T	p.A339S	GAGGTGGCCTATA		117	4	0.03	125	0	0		69	1	0	0				
TMEM57	55219	broad.mit.edu	37	1	25812258	25812258	+	Missense_Mutation	SNP	C	C	T	rs142677711		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	TMEM57,colon,carcinoma,-1,1	TMEM57	NM_018202	exon8	c.C1468T	p.R490W	GCTGCCCGGGCTG		85	3	0.04	92	0	0		72	1	63	0	0.00			
UBXN11	91544	bcgsc.ca	37	1	26608904	26608904	+	Silent	SNP	A	A	G	rs201519763	by1000genomes	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	UBXN11	NM_183008	exon16	c.T1449C	p.P483P	GGGACCAGGACTG		43	5	0.12	41	0	0		54		26	0	0.00			
BAI2	576	broad.mit.edu	37	1	32203076	32203076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	BAI2	NM_001703	exon20	c.C2933A	p.A978E	TTGGATGCCAAGA		199	6	0.03	264	0	0		128		3	0	0.00			
MIR137HG	400765	hgsc.bcm.edu	37	1	98511786	98511786	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	.	.	.	.	TGCCGCCGCCGCC		71	5	0.07	80	0	0				0	0				
IGSF3	3321	ucsc.edu	37	1	117142613	117142613	+	Missense_Mutation	SNP	C	C	T	rs76151115	bycluster;byfrequency	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	IGSF3	NM_001542	exon8	c.G2039A	p.R680Q	GCCAGTCGCGTCC		60	10	0.17	62	6	0.0967741935		294		59	0	0.00			
FLJ39739	0	broad.mit.edu	37	1	143743290	143743291	+	RNA	INS	-	-	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	.	.	.	.	GTATCTGAATCTG		11	4	0.36	18	0	0				5	0	0.00			
SEC22B	9554	broad.mit.edu	37	1	145116193	145116193	+	RNA	DEL	G	G	-	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	.	.	.	.	CTGGCTGGGGCAT		7	2	0.29	4	0	0				102	0	0.00			
RUSC1-AS1	284618	mdanderson.org	37	1	155290690	155290690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001039517	exon2	c.T590C	p.L197P	TGTGCTAGTGCCC		36	4	0.11	43	0	0				0	0				
.	0	broad.mit.edu	37	1	160905270	160905270	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	.	.	.	.	CAAAACAAAAAAA		6	2	0.33	6	0	0				0	0				
AXDND1	126859	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	179504046	179504046	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	AXDND1,caecum,carcinoma,0,2	AXDND1	NM_144696	exon25	c.G2980C	p.E994Q	CAACAAGAAGAAG		230	7	0.03	280	1	0.0035714286		142	2	0	0				
C1orf116	79098	broad.mit.edu	37	1	207196070	207196070	+	Missense_Mutation	SNP	G	G	T	rs200569642	alternate_allele	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	C1orf116	NM_023938	exon4	c.C1039A	p.R347S	CTTTACGTGCTTT		72	3	0.04	103	0	0		64		0	0				
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	63700112	63700118	+	Frame_Shift_Del	DEL	AACCCTA	AACCCTA	-	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	AACCCTA	AACCCTA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	ARID5B	NM_032199	exon3	c.446_452del	p.149_151del	GCAGTCAACCCTA		83	36	0.43	141	0	0		125		2	0	0.00			
NRAP	4892	mdanderson.org	37	10	115423606	115423606	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001261463	exon1	c.G36T	p.G12G	ATAAACCCCATAC		49	3	0.06	73	0	0				0	0				
WDR11	55717	broad.mit.edu	37	10	122643308	122643308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	WDR11	NM_018117	exon14	c.G1756T	p.V586L	GCAGTCGTATTCA		95	3	0.03	131	0	0		95		41	0	0.00			
FANK1	92565	mdanderson.org	37	10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	rs202109621		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA		17	5	0.29	16	0	0				4	0	0.00			
DYNC2H1	79659	broad.mit.edu	37	11	103022865	103022865	+	Splice_Site	SNP	A	A	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	DYNC2H1	NM_001377	exon21	c.A2947T	p.I983F	CTTTAGATTTTGC		86	13	0.15	102	5	0.0490196078		246		0	0				
CKAP4	10970	mdanderson.org	37	12	106633037	106633037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_006825	exon2	c.C1574A	p.P525H	TGAGGAGGCAGAC		52	3	0.06	46	0	0				188	0	0.00			
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123057483	123057483	+	Splice_Site	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_014708	exon25	c.2020-1G>A	.	GTTTTAGAAAGAT		85	26	0.31	81	0	0				2	0	0.00			
MIPEP	4285	broad.mit.edu	37	13	24436484	24436484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	MIPEP	NM_005932	exon9	c.A1010G	p.E337G	ATCATCTCAAAAT		426	5	0.01	510	0	0		53		27	0	0.00			
.	0	broad.mit.edu	37	14	19857036	19857036	+	RNA	SNP	A	A	G	rs374719458		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	.	.	.	.	ATAATAAAGTTCA		54	4	0.07	67	0	0				0	0				
PPP1R36	145376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65054073	65054073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_172365	exon10	c.G873A	p.M291I	ACGCATGACTTTT		101	26	0.26	68	0	0				4	2	0.50			
VRTN	55237	mdanderson.org	37	14	74823869	74823869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_018228	exon2	c.T383C	p.V128A	CCAAAGTGATGCT		45	3	0.07	37	0	0				16	0	0.00			
HERC2P2	0	broad.mit.edu	37	15	23283044	23283044	+	RNA	SNP	T	T	C	rs373395896		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	.	.	.	.	CTGTGCTCATCTT		2	2	1.00	11	0	0				60	0	0.00			
SKOR1	390598	mdanderson.org	37	15	68125019	68125019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001258024	exon13	c.G2446T	p.D816Y	GTCAGAGGTAAGA		36	3	0.08	43	0	0				0	0				
CSPG4	1464	mdanderson.org	37	15	75968620	75968620	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001897	exon10	c.G6240A	p.V2080V	GCGCGGCACACTG		12	2	0.17	30	0	0				3	0	0.00			
CHRNB4	1143	mdanderson.org	37	15	78922241	78922241	+	Silent	SNP	G	G	T	rs141876090	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_000750	exon5	c.C406A	p.R136R	TGGACCGGACTAT		21	2	0.10	28	0	0				16	0	0.00			
ZNF785	146540	broad.mit.edu	37	16	30594036	30594036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	ZNF785	NM_152458	exon3	c.C1063A	p.L355M	CTTCCAGGGCGGT		44	3	0.07	53	0	0		30		8	0	0.00			
TMEM231	79583	mdanderson.org	37	16	75590079	75590079	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001077416	exon1	c.C91A	p.R31R	TCGACCGGGTGAG		16	2	0.13	25	1	0.04				4	0	0.00			
RAI1	10743	mdanderson.org	37	17	17697105	17697105	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_030665	exon3	c.G843A	p.Q281Q	GCAGCAGCAGCAG		78	4	0.05	90	2	0.0222222222				0	0				
TBC1D3P1-DHX40P1	0	broad.mit.edu	37	17	58054437	58054438	+	RNA	INS	-	-	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	.	.	.	.	CTTACAGAAAAAA		10	2	0.20	16	0	0				0	0				
TJP3	27134	mdanderson.org	37	19	3746030	3746030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001267561	exon16	c.G1988T	p.S663I	CCGACAGCCCCTC		77	4	0.05	103	0	0				43	0	0.00			
ADAMTS10	81794	mdanderson.org	37	19	8665878	8665878	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_030957	exon6	c.C744T	p.D248D	CATCTTGTCAGCC		67	4	0.06	64	0	0				0	0				
ILVBL	10994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15230298	15230298	+	Missense_Mutation	SNP	C	C	T	rs149721143		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_006844	exon8	c.G845A	p.R282Q	TTGGCCCGGCTCA		209	11	0.05	237	0	0	0			70	2	0.03			
HSH2D	84941	broad.mit.edu	37	19	16268133	16268133	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	HSH2D	NM_032855	exon8	c.T588G	p.L196L	CCCTCTTGGAGAG		104	6	0.06	137	7	0.0510948905		16		10	0	0.00			
ZNF676	163223	ucsc.edu	37	19	22363172	22363172	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	ZNF676	NM_001001411	exon3	c.C1347T	p.Y449Y	ACATTTGTAGGGT		62	5	0.08	78	5	0.0641025641		146		58	9	0.16			
RHPN2	85415	mdanderson.org	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	RHPN2,face,carcinoma,0,2	RHPN2	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC		21	2	0.10	29	0	0		0	2	34	0	0.00			
CIC	23152	broad.mit.edu	37	19	42795827	42795828	+	Frame_Shift_Ins	INS	-	-	C	rs374527943		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	CIC	NM_015125	exon11	c.2816_2817insC	p.G939fs	GGGCCGGCCAGCC		87	10	0.11	123	0	0		249		28	0	0.00			
APOC1P1	0	broad.mit.edu	37	19	45431267	45431268	+	RNA	INS	-	-	A	rs200256644		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	.	.	.	.	CAGATTGAAAAAA		6	2	0.33	7	0	0				0	0				
MARK4	57787	broad.mit.edu	37	19	45801078	45801078	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	MARK4_ENST00000262891,NS,carcinoma,+2,2	MARK4	NM_001199867	exon15	c.T1743G	p.G581G	AGGGGGTGGGGGT		28	7	0.25	40	7	0.175		132	2	3	2	0.67			
KCNJ14	3770	broad.mit.edu	37	19	48967637	48967637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	KCNJ14	NM_013348	exon3	c.C914T	p.P305L	TCGAGGGGATGGT		94	4	0.04	122	0	0		28		2	0	0.00			
PLEKHA4	57664	mdanderson.org	37	19	49362295	49362295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001161354	exon8	c.C794A	p.P265H	GCAGGGGGTGCTG		36	3	0.08	33	2	0.0606060606				11	0	0.00			
KCNC3	3748	mdanderson.org	37	19	50831677	50831677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_004977	exon1	c.C663A	p.D221E	GCCTCCGTCGTGG		10	2	0.20	13	0	0				0	0				
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	16085979	16085979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_005378	exon3	c.C1155A	p.N385K	CAGAAACCACAAC		126	31	0.25	125	0	0				662	204	0.31			
SPRED2	200734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	65571938	65571938	+	Missense_Mutation	SNP	C	C	T	rs201064965		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	SPRED2,NS,carcinoma,+1,1	SPRED2	NM_181784	exon2	c.G119A	p.R40H	CCGACGCGACTGA		151	8	0.05	127	0	0		1	1	203	17	0.08			
RGPD8	727851	hgsc.bcm.edu	37	2	113147115	113147115	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	RGPD8_ENST00000302558,NS,carcinoma,+1,2	RGPD8_ENST00000302558	NM_001164463	exon20	c.T3407G	p.F1136C	TCAGAGAAATCAC		40	6	0.15	33	0	0		1	2	21	8	0.38			
DBI	1622	mdanderson.org	37	2	120129857	120129857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001178017	exon4	c.A410G	p.N137S	ACATCAACAAAGT		51	3	0.06	37	0	0				707	0	0.00			
DLX2	1746	broad.mit.edu	37	2	172967030	172967030	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	DLX2	NM_004405	exon1	c.C237G	p.G79G	GCCCCCGCCGCCG		108	13	0.12	98	12	0.1224489796		29		1	0	0.00			
IHH	3549	mdanderson.org	37	2	219925070	219925070	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_002181	exon1	c.G120A	p.P40P	GCGTGGCGGTCGC		48	3	0.06	55	0	0				2	0	0.00			
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40033237	40033237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_032221	exon37	c.A8144G	p.N2715S	TTCTAATTGGTGT		154	37	0.24	139	0	0				19	4	0.21			
ADNP	23394	broad.mit.edu	37	20	49508788	49508788	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	ADNP	NM_015339	exon5	c.C2463T	p.G821G	CAACACGCCAGGC		248	4	0.02	194	0	0		106		122	0	0.00			
KCNG1	3755	bcgsc.ca	37	20	49621194	49621194	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	KCNG1	NM_002237	exon3	c.C924A	p.A308A	CAGGATGGCCACC		80	5	0.06	74	0	0		86		9	0	0.00			
ZNRF3	84133	mdanderson.org	37	22	29446448	29446448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001206998	exon8	c.G2279A	p.G760D	TGTACGGCCTTCA		41	3	0.07	37	0	0				101	0	0.00			
PLA2G6	8398	mdanderson.org	37	22	38528898	38528898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001004426	exon7	c.C1017A	p.H339Q	GGCCCCGTGGGTC		39	3	0.08	59	0	0				15	0	0.00			
TCF20	6942	bcgsc.ca;mdanderson.org	37	22	42606966	42606966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	TCF20	NM_181492	exon1	c.C4346A	p.T1449K	GCATGTGTCTCTG		71	5	0.07	90	1	0.0111111111		164		33	0	0.00			
NAT6	24142	mdanderson.org	37	3	50334945	50334945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_012191	exon2	c.C16A	p.L6M	GGCTCAGAGTCAG		44	3	0.07	73	0	0				30	0	0.00			
CHST2	9435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	142839860	142839860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_004267	exon2	c.C202T	p.L68F	CTGGTGCTCACTA		95	16	0.17	76	0	0				11	2	0.18			
BMP2K	55589	mdanderson.org	37	4	79792166	79792166	+	Missense_Mutation	SNP	C	C	G	rs200441916	bycluster	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	BMP2K_ENST00000502871,caecum,carcinoma,0,4	BMP2K_ENST00000502871	NM_017593	exon11	c.C1461G	p.H487Q	GCAGCACCACCAC		11	2	0.18	24	0	0		0	4	10	0	0.00			
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	151829586	151829586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_006726	exon11	c.A1393C	p.S465R	TTGCACTTTGGAT		219	73	0.33	245	0	0				5	3	0.60			
TENM3	55714	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183609373	183609373	+	Missense_Mutation	SNP	G	G	A	rs147392905	bycluster;by1000genomes	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001080477	exon11	c.G2090A	p.R697H	CGTGTCGCTGTGA		70	23	0.33	84	0	0	0.001			6	6	1.00			
PCDHB4	0	broad.mit.edu	37	5	140502496	140502496	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	PCDHB4,colon,carcinoma,-1,2	PCDHB4	NM_018938	exon1	c.T916A	p.L306M	AAAAAATTGGATT		103	4	0.04	125	0	0		177	2	0	0				
ECI2	10455	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	4133832	4133832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	ECI2_ENST00000380118,NS,malignant_melanoma,0,2	ECI2	NM_206836	exon2	c.A164G	p.K55R	GGATCCTTTTTCA		184	7	0.04	134	0	0		59	2	60	0	0.00			
VWA7	80737	broad.mit.edu	37	6	31733784	31733784	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_025258	exon16	c.T2375G	p.V792G	TCTGGGACCTCCA		121	33	0.27	84	32	0.380952381				2	1	0.50			
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32023843	32023843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_019105	exon24	c.C8252T	p.S2751L	CTCAGCGAGTCAG		77	19	0.25	67	0	0				5	3	0.60			
FNDC1	84624	mdanderson.org	37	6	159653813	159653813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	FNDC1,NS,carcinoma,-2,1	FNDC1	NM_032532	exon11	c.G2269T	p.A757S	TCCAATGCGCCAT		62	4	0.06	87	0	0		-2	1	8	0	0.00			
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12644158	12644158	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001112706	exon4	c.G536C	p.G179A	GGTGTGGTTCCTC		138	22	0.16	97	0	0				0	0				
YKT6	10652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44240804	44240804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_006555	exon1	c.G70A	p.D24N	GCATACGATGTGT		230	54	0.23	167	0	0				186	48	0.26			
.	0	broad.mit.edu	37	7	45573979	45573979	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	.	.	.	.	CAAAGCAAAAAAA		6	2	0.33	7	0	0				0	0				
OR2A2	442361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143806941	143806941	+	Missense_Mutation	SNP	G	G	C	rs139387901	alternate_allele	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	OR2A2,upper_arm,malignant_melanoma,0,1	OR2A2	NM_001005480	exon1	c.G266C	p.R89T	AGAAAAGAACCAT		245	42	0.17	226	0	0		0	1	0	0				
CSMD1	64478	broad.mit.edu	37	8	3015436	3015436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	CSMD1_ENST00000537824,NS,carcinoma,0,2	CSMD1	NM_033225	exon39	c.C5897A	p.P1966Q	GGAGACGGATAGT		315	5	0.02	329	0	0		1469	2	1	0	0.00			
RP1L1	94137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10464479	10464479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	RP1L1	NM_178857	exon4	c.G7129A	p.A2377T	CGAGTGCCTGGTC		79	13	0.16	94	1	0.0106382979		453		0	0				
STC1	6781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	23702390	23702398	+	In_Frame_Del	DEL	TGTTGAAGT	TGTTGAAGT	-	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	TGTTGAAGT	TGTTGAAGT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	STC1	NM_003155	exon4	c.630_638del	p.210_213del	GTCTCCTGTTGAA		183	0	0.00	230	0	0		49		11	0	0.00			
STC1	6781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	23702401	23702406	+	In_Frame_Del	DEL	GCTCGT	GCTCGT	-	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	GCTCGT	GCTCGT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	STC1	NM_003155	exon4	c.622_627del	p.208_209del	AAGTCAGCTCGTG		182	21	0.12	228	0	0		49		12	0	0.00			
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100479794	100479794	+	Missense_Mutation	SNP	C	C	G	rs140353201	alternate_allele	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_152564	exon24	c.C3598G	p.R1200G	GATACACGACATT		190	29	0.15	168	0	0				3	1	0.33			
SLC52A2	79581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145583775	145583775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_024531	exon3	c.C623A	p.A208D	CTTCAGCTGCTGC		115	29	0.25	63	0	0				184	51	0.28			
KIAA2026	158358	mdanderson.org	37	9	6007725	6007725	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001017969	exon1	c.G63A	p.P21P	GGCCGCCGGTGGC		58	3	0.05	50	0	0				2	0	0.00			
PRSS3	5646	hgsc.bcm.edu	37	9	33797828	33797828	+	Missense_Mutation	SNP	C	C	T	rs143209949	bycluster;byfrequency	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	PRSS3_ENST00000361005,NS,carcinoma,-1,2	PRSS3_ENST00000361005	NM_007343	exon3	c.C373T	p.R125C	ATCAGCCGCATCC		103	6	0.06	121	1	0.0082644628	0.001	-1	2	0	0				
RECK	8434	bcgsc.ca	37	9	36037093	36037093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	RECK	NM_021111	exon1	c.C98T	p.A33V	GCAGTGCGGGTGA		22	4	0.18	24	0	0		73		18	0	0.00			
TOR1B	27348	mdanderson.org	37	9	132565665	132565665	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_014506	exon1	c.C174T	p.R58R	CTGCCGCGAGGAG		20	3	0.15	25	0	0				20	0	0.00			
ABL1	25	mdanderson.org	37	9	133759942	133759942	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_007313	exon11	c.C2322T	p.H774H	AGGGCACAAAAGT		39	3	0.08	72	0	0				35	0	0.00			
KIAA1984	84960	mdanderson.org	37	9	139700593	139700593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001039374	exon10	c.G1012T	p.D338Y	ATGGAGGACTGTG		42	3	0.07	52	0	0				2	0	0.00			
FAM104B	90736	mdanderson.org	37	X	55172630	55172630	+	Nonsense_Mutation	SNP	G	G	A	rs113263757	bycluster	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001166700	exon3	c.C238T	p.Q80X	AGAACTGGGGAAA		32	4	0.13	35	0	0				58	0	0.00			
FAM104B	90736	mdanderson.org	37	X	55172645	55172645	+	Missense_Mutation	SNP	C	C	G	rs1047042	bycluster;byfrequency;alternate_allele	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001166700	exon3	c.G223C	p.D75H	TTGCATCGGGTTC		33	4	0.12	36	0	0				65	0	0.00			
ZNF274	10782	mdanderson.org	37	19	58723675	58723675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	.	.	.	.	GGTCCAGGAAGTC		48	3	0.06	59	0	0				30	0	0.00			
