Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
TAS1R3	83756	mdanderson.org	37	1	1269178	1269178	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_152228	exon6	c.C1893T	p.A631A	CCCTGCCCGATGC		41	3	0.07	39	0	0				1	0	0.00			
PRDM16	63976	mdanderson.org	37	1	3329295	3329295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	PRDM16,colon,carcinoma,0,1	PRDM16	NM_022114	exon9	c.C2534T	p.A845V	GCCCGGCGCGGAT		37	3	0.08	30	0	0		0	1	1	0	0.00			
TP73	7161	mdanderson.org	37	1	3649534	3649534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_005427	exon14	c.G1802T	p.G601V	GCGGCGGCCCAGG		32	3	0.09	24	0	0				1	0	0.00			
CROCCP2	84809	hgsc.bcm.edu	37	1	16953145	16953145	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	ATCACCGCAGAAA		48	12	0.25	29	0	0				0	0				
.	343477	bcgsc.ca	37	1	92109629	92109629	+	RNA	SNP	G	G	A	rs12042591	bycluster;byhapmap	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	GAAAACGATAAAT		45	5	0.11	44	0	0				0	0				
CCDC18	0	broad.mit.edu	37	1	93744310	93744310	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	CCDC18	.	.	.	.	TGCAAATTTTTTT		8	3	0.38	5	0	0		93		2	0	0.00			
.	0	broad.mit.edu	37	1	142806243	142806243	+	RNA	SNP	G	G	A	rs200190101		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	TCTCAAGCATTTT		210	12	0.06	148	0	0				0	0				
.	653259	bcgsc.ca	37	10	47727808	47727809	+	Splice_Site	INS	-	-	C	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	ACAGTTAACTCAT		26	3	0.12	69	0	0				0	0				
SYCE1	93426	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	135369120	135369120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	SYCE1	NM_001143763	exon11	c.C811A	p.Q271K	GCTGCTGTTGTTG		45	4	0.09	30	0	0		81		3	0	0.00			
ASCL2	430	mdanderson.org	37	11	2291319	2291319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_005170	exon1	c.G244A	p.A82T	TGCTGGCGCCGCC		14	2	0.14	13	0	0				0	0				
OR51A4	401666	ucsc.edu	37	11	4967831	4967831	+	Missense_Mutation	SNP	T	T	C	rs61729915	bycluster;byfrequency	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	OR51A4	NM_001005329	exon1	c.A500G	p.N167S	CTCAAGTTTCTTA		85	32	0.38	293	40	0.1365187713		73		0	0				
GTF2H1	2965	mdanderson.org	37	11	18387386	18387386	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001142307	exon16	c.G1617A	p.W539X	CACATGGCAGTCA		50	3	0.06	51	0	0				75	0	0.00			
MYBPC3	4607	mdanderson.org	37	11	47355259	47355259	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_000256	exon28	c.C3039A	p.P1013P	TGCCAGGGGCTGC		23	3	0.13	46	0	0				1	0	0.00			
TCIRG1	10312	mdanderson.org	37	11	67817527	67817527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_006019	exon17	c.G2112T	p.E704D	AGAGGAGGCCGAG		49	3	0.06	36	0	0				87	0	0.00			
SPCS2	9789	broad.mit.edu	37	11	74680617	74680617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	SPCS2	NM_014752	exon4	c.G367T	p.V123L	TATTTTGTGATGA		86	3	0.03	129	0	0		17		18	0	0.00			
NCAM1	4684	mdanderson.org	37	11	113133588	113133588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001076682	exon20	c.G2227A	p.A743T	AATTCTGCATCCT		111	5	0.05	124	0	0				0	0				
DCP1B	196513	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	DCP1B,bladder,carcinoma,0,13	DCP1B	NM_152640	exon7	c.G756C	p.Q252H	CTGCTGCTGGTGG		88	6	0.07	23	0	0		0	13	84	0	0.00			
SETD1B	23067	broad.mit.edu;mdanderson.org	37	12	122257461	122257461	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	SETD1B	NM_015048	exon11	c.G3441A	p.E1147E	AGAAGAGGAGGAG		51	3	0.06	45	0	0		105		17	0	0.00			
TPTE2P1	0	broad.mit.edu	37	13	25525716	25525716	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	AGAAACAAAAAAA		11	6	0.55	9	0	0				0	0				
INTS6	26512	mdanderson.org	37	13	51961633	51961633	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_012141	exon7	c.G783A	p.W261X	GCTATGCCAAGGC		49	3	0.06	56	0	0				5	0	0.00			
CUL4A	8451	mdanderson.org	37	13	113864355	113864355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001008895	exon2	c.G217T	p.V73L	CGGGCCGTGCAGA		38	3	0.08	56	0	0				56	0	0.00			
ANG	283	broad.mit.edu	37	14	21162161	21162161	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	ANG	NM_001097577	exon2	c.T438G	p.R146R	CCGTCGTCCGTAA		175	4	0.02	187	0	0		8		14	0	0.00			
ARHGEF40	55701	mdanderson.org	37	14	21542129	21542129	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_018071	exon3	c.G240A	p.W80X	GGGGTGGCCGCTC		44	3	0.07	46	0	0				7	0	0.00			
STON2	85439	mdanderson.org	37	14	81837529	81837529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001256430	exon5	c.C374A	p.A125D	GGTAGGGCTGGGG		37	3	0.08	75	0	0				0	0				
.	0	bcgsc.ca	37	14	89577485	89577485	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	GAGAAGACAATGA		40	4	0.10	40	0	0				0	0				
CAPN3	825	broad.mit.edu	37	15	42684848	42684848	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	CAPN3	NM_000070	exon7	c.G957T	p.P319P	CATTCCGGTTCAG		121	4	0.03	153	0	0		172		3	0	0.00			
ARIH1	25820	broad.mit.edu	37	15	72767235	72767235	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	ARIH1	NM_005744	exon1	c.C255T	p.G85G	CGGCGGCGGTGGT		42	4	0.10	54	0	0		42		0	0				
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu	37	15	79284128	79284128	+	Silent	SNP	G	G	T	rs147869279	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	RASGRF1,colon,carcinoma,0,1	RASGRF1	NM_002891	exon22	c.C3084A	p.G1028G	CTTCACGCCTTCA		94	4	0.04	102	0	0		0	1	0	0				
.	0	broad.mit.edu	37	16	67326	67326	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	GGAGCTGACAGAG		37	6	0.16	21	0	0				10	0	0.00			
ZNF598	90850	mdanderson.org	37	16	2052283	2052283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	ZNF598,NS,carcinoma,-1,1	ZNF598	NM_178167	exon7	c.C819A	p.S273R	GGCGCGGCTGCGA		32	3	0.09	17	0	0		-1	1	92	0	0.00			
LOC653786	0	broad.mit.edu	37	16	22579566	22579569	+	RNA	DEL	ATTC	ATTC	-	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	ATTC	ATTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	GGGTTAATTCATC		70	7	0.10	81	11	0.1358024691				0	0				
KIF22	3835	mdanderson.org	37	16	29809712	29809712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_007317	exon3	c.G284T	p.G95V	TCTATGGGGAGAG		47	3	0.06	49	0	0				178	0	0.00			
FBXL19	54620	mdanderson.org	37	16	30941668	30941668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001099784	exon7	c.C1124A	p.P375H	TGCGCCCTGGCAG		29	3	0.10	27	0	0				24	0	0.00			
FAM65A	79567	mdanderson.org	37	16	67576061	67576061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001193523	exon13	c.G1432T	p.A478S	GTAGATGCTGCCT		52	3	0.06	70	1	0.0142857143				18	0	0.00			
SMTNL2	342527	mdanderson.org	37	17	4500213	4500213	+	Missense_Mutation	SNP	G	G	A	rs200110141	by1000genomes	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001114974	exon6	c.G1048A	p.A350T	GCCAGCGCCAGCA		42	3	0.07	37	0	0	0			9	0	0.00			
RPAIN	84268	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	5324644	5324644	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	RPAIN	NM_001160246	exon2	c.G110C	p.R37P	ACAGCCGGGACAG		127	13	0.10	98	1	0.0102040816		24		207	25	0.12			
CHD3	1107	broad.mit.edu	37	17	7812537	7812537	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	CHD3,NS,carcinoma,0,1	CHD3	NM_001005271	exon37	c.A5648C	p.H1883P	CGGCGCACCCCGC		101	20	0.20	63	9	0.1428571429		169	1	41	2	0.05			
ARHGAP23	57636	mdanderson.org	37	17	36666995	36666995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001199417	exon24	c.G4263T	p.E1421D	CAACGAGTGGAAG		33	3	0.09	20	0	0				2	0	0.00			
TOP2A	7153	broad.mit.edu	37	17	38555154	38555154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	TOP2A,colon,carcinoma,0,1	TOP2A	NM_001067	exon26	c.C3324A	p.N1108K	CTTTTCGTTGTCA		165	4	0.02	136	0	0		124	1	184	0	0.00			
LRRC59	55379	broad.mit.edu	37	17	48460490	48460490	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	LRRC59	NM_018509	exon7	c.A783G	p.G261G	CAGCCCTCCCGCC		101	22	0.22	69	17	0.2463768116		23		339	32	0.09			
RPTOR	57521	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	78858821	78858821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	RPTOR,rectum,carcinoma,0,1	RPTOR	NM_020761	exon17	c.C1856T	p.A619V	GCGCAGCGGTCTT		219	7	0.03	174	0	0		122	1	19	1	0.05	rescued with RNA-seq		
C17orf70	80233	mdanderson.org	37	17	79507958	79507958	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_025161	exon9	c.C2533T	p.Q845X	GGGTCTGCACCTC		32	3	0.09	15	0	0				91	0	0.00			
CTAGE1	64693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19997302	19997302	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_172241	exon1	c.C473G	p.A158G	GCTTCAGCTACTT		82	26	0.32	113	0	0				1	0	0.00			
PHLPP1	23239	mdanderson.org	37	18	60384158	60384158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_194449	exon1	c.G1242T	p.Q414H	GCCTCAGCCGCAG		16	2	0.13	12	0	0				2	0	0.00			
FBL	2091	hgsc.bcm.edu	37	19	40325395	40325395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	FBL,NS,carcinoma,+1,1	FBL	NM_001436	exon8	c.A854G	p.K285R	TGCATCTTTTTCA		100	4	0.04	105	1	0.0095238095		1	1	1842	1	0.00			
BLVRB	645	mdanderson.org	37	19	40964299	40964299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_000713	exon2	c.G233A	p.R78H	TCATTGCGGGTGC		29	3	0.10	50	0	0				126	0	0.00			
SPTBN4	57731	broad.mit.edu	37	19	41073695	41073695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	SPTBN4	NM_020971	exon31	c.A6463G	p.R2155G	TATGAAAGGGGCT		77	19	0.25	91	13	0.1428571429		213		0	0				
RPS19	6223	mdanderson.org	37	19	42364899	42364899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001022	exon2	c.G55A	p.A19T	GCTCTGGCAGCCT		44	3	0.07	69	0	0				9413	2	0.00			
BLOC1S3	388552	broad.mit.edu	37	19	45682769	45682769	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	BLOC1S3	NM_212550	exon2	c.215delA	p.E72fs	AGCCGGAACCGAC		6	2	0.33	5	0	0		4		0	0				
NRBP1	29959	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	27664455	27664455	+	Missense_Mutation	SNP	C	C	T	rs374507004		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_013392	exon17	c.C1469T	p.A490V	AGTTGGCGGCTGA		118	5	0.04	76	0	0				715	0	0.00			
PRPF40A	55660	broad.mit.edu	37	2	153573929	153573929	+	Missense_Mutation	SNP	G	G	A	rs371312661	alternate_allele	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	PRPF40A	NM_017892	exon1	c.C25T	p.R9W	TGCTCCGCCGGCG		176	4	0.02	165	0	0		149		43	0	0.00			
BAGE	85319	broad.mit.edu	37	21	11058613	11058614	+	RNA	INS	-	-	A	rs377480117	bycluster	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	TTTTTTTAAAGCA		7	2	0.29	6	0	0				0	0				
SLC7A4	6545	mdanderson.org	37	22	21385978	21385978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_004173	exon2	c.C124A	p.L42M	GAGTCAGGTCCAG		46	3	0.07	59	0	0				0	0				
TPRXL	348825	hgsc.bcm.edu	37	3	14106354	14106354	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	TPRXL,NS,carcinoma,0,1	TPRXL	.	.	.	.	CAGCAGCCCCAGC		11	5	0.45	6	1	0.1666666667		0	1	3	2	0.67			
IFT122	55764	mdanderson.org	37	3	129239031	129239031	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_052985	exon31	c.G3802T	p.E1268X	CATTCTGAGGACT		50	3	0.06	40	0	0				58	0	0.00			
PRDM8	56978	mdanderson.org	37	4	81123665	81123665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001099403	exon4	c.G1049T	p.C350F	TGGTGTGCACACC		19	2	0.11	27	0	0				1	0	0.00			
DSPP	1834	bcgsc.ca	37	4	88537036	88537036	+	Silent	SNP	C	C	T	rs367922244		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	DSPP,NS,carcinoma,0,1	DSPP	NM_014208	exon5	c.C3222T	p.D1074D	CAGTGACAGCAGC		72	12	0.17	117	1	0.0085470085		174	1	0	0				
.	152905	bcgsc.ca	37	4	146296711	146296711	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	CATCGGCGGCCAC		52	20	0.38	95	0	0				6	0	0.00			
MYO10	4651	mdanderson.org	37	5	16673975	16673975	+	Missense_Mutation	SNP	C	C	T	rs25901	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_012334	exon36	c.G4988A	p.S1663N	ATCTCGCTTCCTG		64	2	0.03	92	0	0				65	0	0.00			
APBB3	10307	broad.mit.edu	37	5	139938282	139938282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	APBB3	NM_006051	exon12	c.T1370C	p.L457P	AGGGGGAGGGGCA		286	5	0.02	304	2	0.0065789474		34		11	0	0.00			
EXOC2	55770	mdanderson.org	37	6	598057	598057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_018303	exon10	c.C1037A	p.T346K	GATGGTGTCTCAA		85	4	0.05	95	0	0				22	0	0.00			
ZNF322	79692	broad.mit.edu	37	6	26637624	26637624	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001242797	exon5	c.A1158G	p.K386K	AAGACCTTTTTCA		680	7	0.01	762	0	0				13	0	0.00			
CUTA	51596	broad.mit.edu	37	6	33384432	33384432	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	CUTA	NM_001014433	exon6	c.C592A	p.P198T	ATCATGGCAGGAC		206	4	0.02	247	0	0		5		218	0	0.00			
GJA1	2697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	121768358	121768358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_000165	exon2	c.A365G	p.N122S	GTGTCAATGTGGA		168	40	0.24	131	0	0				218	49	0.22			
MTHFD1L	25902	broad.mit.edu	37	6	151413631	151413631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	MTHFD1L	NM_001242767	exon27	c.G2879T	p.R960L	CCACCCGGCCCTG		117	4	0.03	101	0	0		75		106	0	0.00			
CCT6P3	0	broad.mit.edu	37	7	64528813	64528814	+	RNA	INS	-	-	T	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	CTGTAACTTTTTT		52	8	0.15	16	0	0				1	0	0.00			
CCT6P3	0	broad.mit.edu	37	7	64530103	64530103	+	RNA	SNP	G	G	A	rs369683052	bycluster	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	TGCTTGGGACATG		113	6	0.05	44	1	0.0227272727				54	0	0.00			
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	CCGGGGTCCTTGA		348	7	0.02	122	0	0				0	0				
BUD31	8896	hgsc.bcm.edu;broad.mit.edu	37	7	99015089	99015089	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	BUD31	NM_003910	exon5	c.254delA	p.D85fs	TGCAGACAAAAAC		119	14	0.12	53	0	0		12		359	0	0.00			
PRKDC	5591	broad.mit.edu	37	8	48746799	48746799	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	PRKDC	.	.	.	.	CCAGCCTTTTTTT		186	8	0.04	132	0	0		394		115	0	0.00			
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	3047	3047	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	TTCAACGATTAAA		14	14	1.00	12	0	0				0	0				
.	84443	broad.mit.edu	37	X	106846471	106846471	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	GCAGCAACAACAA		192	5	0.03	114	1	0.0087719298				3	0	0.00			
TXLNG2P	0	broad.mit.edu	37	Y	21761906	21761907	+	RNA	INS	-	-	A	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	TXLNG2P	.	.	.	.	AAGTGGGAAAAAA		9	4	0.44	8	0	0		4		0	0				
