Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
SPEN	23013	bcgsc.ca	37	1	16199321	16199321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	SPEN,NS,carcinoma,0,1	SPEN	NM_015001	exon2	c.G94T	p.V32L	GGCCGCGTGGAAA		55	0	0.00	52	0	0		374	1	74	0	0.00			
SPEN	23013	mdanderson.org	37	1	16258924	16258924	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_015001	exon11	c.A6189G	p.V2063V	AGTTGTAGAGAAA		59	3	0.05	88	0	0				255	0	0.00			
.	0	broad.mit.edu	37	1	16959834	16959834	+	RNA	SNP	G	G	T	rs201123694	bycluster;byfrequency	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	Q6ZWC0_HUMAN,NS,carcinoma,0,1	.	.	.	.	.	GCTGCAGCGGGTC		52	10	0.19	41	1	0.0243902439			1	16	3	0.19			
ECE1	1889	mdanderson.org	37	1	21560084	21560084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001397	exon14	c.C1637T	p.A546V	TGATCGGCAGTGA		59	4	0.07	51	0	0				119	0	0.00			
ZMYM4	9202	bcgsc.ca	37	1	35836147	35836147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	ZMYM4	NM_005095	exon7	c.C1100T	p.T367I	GCTCCACACTGTG		76	0	0.00	97	0	0		143		31	0	0.00			
NRAS	4893	bcgsc.ca	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	rs11554290	bycluster;byfrequency;byhapmap	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	NRAS,NS,haematopoietic_neoplasm,-1,2068	NRAS	NM_002524	exon3	c.A182G	p.Q61R	TCTTCTTGTCCAG		124	0	0.00	103	0	0		3766	2068	68	0	0.00			
.	0	broad.mit.edu	37	1	143195473	143195473	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	AAAAGCAAAAAAA		11	6	0.55	6	1	0.1666666667				0	0				
CR1	1378	broad.mit.edu	37	1	207749012	207749012	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	CR1	NM_000651	exon28	c.G4524A	p.P1508P	GAAGCCGCCAATT		286	4	0.01	287	0	0		354		6	0	0.00			
ARMC3	219681	bcgsc.ca	37	10	23290962	23290962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	ARMC3	NM_173081	exon12	c.G1540A	p.A514T	CTGACGGCCAATG		109	0	0.00	113	0	0		102		2	0	0.00			
UNC5B	219699	mdanderson.org	37	10	73056412	73056412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_170744	exon15	c.G2403T	p.L801F	CAGCTTGGCCTCC		41	3	0.07	67	0	0				2	0	0.00			
SMC3	9126	bcgsc.ca	37	10	112361739	112361739	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	SMC3	NM_005445	exon25	c.G2908C	p.E970Q	AAACTTGAGCAGT		144	0	0.00	140	0	0		103		483	1	0.00			
MTG1	92170	mdanderson.org	37	10	135207793	135207793	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_138384	exon1	c.C69T	p.C23C	CCTGTGCGGTCGC		14	2	0.14	12	0	0				72	0	0.00			
KRTAP5-5	439915	mdanderson.org	37	11	1651442	1651442	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KRTAP5-5,bladder,carcinoma,0,4	KRTAP5-5	NM_001001480	exon1	c.G372C	p.G124G	TGGGGGGTCCAAG		35	4	0.11	48	4	0.0833333333		0	4	0	0				
FOLH1	2346	bcgsc.ca	37	11	49204790	49204790	+	Silent	SNP	A	A	G	rs76509850	bycluster;byfrequency	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		153	8	0.05	182	2	0.010989011		141		0	0				
C11orf92	399948	mdanderson.org	37	11	111168758	111168758	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GGGAATCAGTCTG		41	3	0.07	63	0	0				0	0				
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	113076296	113076296	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001242608	exon5	c.A398G	p.E133G	AGGGGGAAGATGC		115	5	0.04	137	0	0				3	0	0.00			
PHLDB1	23187	mdanderson.org	37	11	118498701	118498701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001144758	exon6	c.G1162T	p.V388F	CCTCCAGTCCCTG		39	3	0.08	70	0	0				22	0	0.00			
KDM5A	5927	bcgsc.ca	37	12	459828	459828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KDM5A_ENST00000399788,NS,carcinoma,+1,4	KDM5A	NM_001042603	exon10	c.C1267T	p.P423S	TCACCGGAAATCC		219	0	0.00	183	0	0		307	4	39	0	0.00			
ASIC1	41	mdanderson.org	37	12	50452708	50452708	+	Silent	SNP	C	C	A	rs653576	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_020039	exon2	c.C159A	p.S53S	GGGCTCCCTGGCT		73	2	0.03	60	0	0				4	0	0.00			
PTPRB	5787	bcgsc.ca	37	12	70970172	70970172	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	PTPRB	NM_001109754	exon11	c.A2832T	p.Q944H	CCGCTCTTGGCTG		110	0	0.00	108	0	0		676		8	0	0.00			
CCDC60	160777	mdanderson.org	37	12	119866560	119866560	+	Nonsense_Mutation	SNP	C	C	T	rs373119369		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	CCDC60,NS,malignant_melanoma,-1,3	CCDC60	NM_178499	exon2	c.C163T	p.R55X	CTTATACGAAGCC		52	3	0.06	48	0	0		-1	3	0	0				
TMEM132C	92293	mdanderson.org	37	12	129190080	129190080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001136103	exon9	c.C2567T	p.A856V	GAAGAGCCACTAC		33	3	0.09	44	0	0				27	0	0.00			
.	0	broad.mit.edu;ucsc.edu	37	13	52035085	52035085	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GTGACTCATGATG		41	4	0.10	46	0	0				8	0	0.00			
.	0	broad.mit.edu	37	14	20136847	20136848	+	RNA	INS	-	-	GAGGGGAGCGCGGC	rs372682945	bycluster	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	CGGGAGGGAGGGG		23	5	0.22	34	0	0				0	0				
KIAA0391	0	bcgsc.ca	37	14	35593060	35593060	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	KIAA0391	NM_014672	exon2	c.C609G	p.A203A	GAAAGCCAGATAT		103	0	0.00	114	0	0		35		37	0	0.00			
KCNH5	27133	mdanderson.org	37	14	63417243	63417243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_172375	exon7	c.T977C	p.V326A	AGACGCACCACTT		14	2	0.14	21	0	0				1	0	0.00			
CYP19A1	1588	bcgsc.ca	37	15	51504564	51504564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	CYP19A1	NM_031226	exon10	c.T1216C	p.F406L	GGAAAAACTCGAG		136	0	0.00	138	1	0.0072463768		75		0	0				
CCDC154	645811	mdanderson.org	37	16	1486047	1486047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001143980	exon14	c.C1528A	p.L510I	ATAGTAGCGTGGC		44	3	0.07	40	0	0				6	0	0.00			
ATF7IP2	80063	mdanderson.org	37	16	10531989	10531989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001256160	exon6	c.G992T	p.S331I	TCTATAGCATAAA		53	3	0.06	42	0	0				8	0	0.00			
IL27	246778	broad.mit.edu	37	16	28511197	28511197	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	IL27	NM_145659	exon5	c.A507G	p.E169E	CTCCTCTTCCTCC		41	5	0.12	53	0	0		27		1	0	0.00			
PITPNM3	83394	mdanderson.org	37	17	6358778	6358778	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_031220	exon20	c.C2805A	p.P935P	GGCGGCGGGCGGG		23	3	0.13	31	0	0				0	0				
TBC1D26	353149	broad.mit.edu;mdanderson.org	37	17	15641610	15641610	+	Missense_Mutation	SNP	A	A	G	rs202131240		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	TBC1D26	NM_178571	exon7	c.A296G	p.Y99C	GAGTATACAAAGT		89	5	0.06	89	0	0		16		0	0				
MED9	55090	mdanderson.org	37	17	17380478	17380478	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_018019	exon1	c.T123C	p.P41P	TGCGCCTCAACCG		52	3	0.06	74	0	0				40	0	0.00			
ERAL1	26284	broad.mit.edu	37	17	27182148	27182148	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	ERAL1,NS,carcinoma,+1,1	ERAL1	NM_005702	exon1	c.T96C	p.P32P	GATCCCTTTTTCC		145	4	0.03	157	0	0		28	1	72	0	0.00			
ATAD5	79915	bcgsc.ca	37	17	29162012	29162012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	ATAD5,NS,carcinoma,-2,1	ATAD5	NM_024857	exon2	c.A913G	p.I305V	GGTTATATAAGTG		230	0	0.00	226	0	0		150	1	8	0	0.00			
HNF1B	6928	mdanderson.org	37	17	36104627	36104627	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001165923	exon1	c.C249A	p.G83G	GTCGTCGCCGTCC		31	3	0.10	41	0	0				4	0	0.00			
FAM104A	84923	bcgsc.ca	37	17	71228444	71228444	+	Translation_Start_Site	SNP	A	A	C	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	FAM104A,NS,carcinoma,+1,1	FAM104A	NM_032837	exon1	c.T2G	p.M1R	CCCCCCATGTCGC		37	0	0.00	34	0	0		15	1	1	0	0.00			
C2CD4C	126567	mdanderson.org	37	19	407125	407125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001136263	exon2	c.C1237T	p.P413S	TCAGGGGCAGCTC		37	3	0.08	27	0	0				27	0	0.00			
PRAM1	84106	broad.mit.edu	37	19	8555089	8555089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	PRAM1	NM_032152	exon10	c.T1997C	p.L666P	AGGGGGAGTGGTT		118	6	0.05	113	3	0.0265486726		53		9	0	0.00			
SLC35E1	79939	mdanderson.org	37	19	16682776	16682776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_024881	exon1	c.C400T	p.P134S	ACACGGGCACCTT		50	3	0.06	56	0	0				18	0	0.00			
CILP2	148113	ucsc.edu	37	19	19655587	19655587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	CILP2	NM_153221	exon8	c.G2233A	p.A745T	GCCTACGCCAACG		19	4	0.21	12	0	0		84		53	0	0.00			
.	0	broad.mit.edu	37	19	20262850	20262850	+	RNA	DEL	T	T	-	rs58259738	bycluster	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	TTTTTCTTTTTTT		6	3	0.50	7	0	0				0	0				
MEGF8	1954	mdanderson.org	37	19	42847747	42847747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001271938	exon9	c.G1632T	p.K544N	GTACAAGGTGCCC		23	3	0.13	35	0	0				11	0	0.00			
PSG3	5671	hgsc.bcm.edu	37	19	43236936	43236936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	PSG3,bladder,carcinoma,0,1	PSG3	NM_021016	exon3	c.C709A	p.P237T	ACTCACGGAGGAG		47	2	0.04	39	0	0		0	1	0	0				
SCAF1	58506	bcgsc.ca	37	19	50154180	50154202	+	Frame_Shift_Del	DEL	CACGGGAGACGGGGGCCCTGCCC	CACGGGAGACGGGGGCCCTGCCC	-	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	CACGGGAGACGGGGGCCCTGCCC	CACGGGAGACGGGGGCCCTGCCC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	SCAF1	NM_021228	exon7	c.534_556del	p.178_186del	CTTGGGCACGGGA		92	0	0.00	93	0	0		78		63	0	0.00			
ZNF816	125893	mdanderson.org	37	19	53456016	53456016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001202456	exon3	c.C178A	p.L60M	ACTCCAGGTTCCT		40	3	0.08	30	0	0				15	0	0.00			
UBE2M	9040	bcgsc.ca	37	19	59067702	59067702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	UBE2M	NM_003969	exon5	c.G392A	p.G131D	TGCAGGCCATAAA		93	0	0.00	115	0	0		14		254	0	0.00			
AGBL5	60509	mdanderson.org	37	2	27291584	27291584	+	Missense_Mutation	SNP	G	G	T	rs145155050	alternate_allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_021831	exon13	c.G2327T	p.R776L	GAGCTCGGATGCC		72	4	0.06	100	0	0				30	0	0.00			
LOC1720	0	bcgsc.ca	37	2	83084363	83084363	+	RNA	SNP	A	A	G	rs376641495	alternate_allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	ACAAGGATCATAC		64	0	0.00	65	0	0				0	0				
ANKRD20A8P	0	broad.mit.edu	37	2	95490975	95490977	+	RNA	DEL	TGT	TGT	-	rs376152132		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	TGT	TGT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	TGCTGCTGTTGTT		6	2	0.33	6	0	0				0	0				
WASH2P	0	broad.mit.edu	37	2	114355774	114355784	+	RNA	DEL	GAGGTGGCTGG	GAGGTGGCTGG	-	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	GAGGTGGCTGG	GAGGTGGCTGG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GTCCCCGAGGTGG		9	4	0.44	4	0	0				9	0	0.00			
LRP2	4036	mdanderson.org	37	2	169997025	169997025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_004525	exon72	c.C13139A	p.P4380Q	CTGCATGGGGGGG		43	3	0.07	45	0	0				0	0				
FRG1B	0	broad.mit.edu	37	20	29628299	29628300	+	Missense_Mutation	DNP	AG	AG	GA	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	AG	AG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	FRG1B,bladder,carcinoma,0,16	FRG1B	.	.	.	p.S101D	GCAAAAAGTAAAA		237	5	0.02	217	1	0.0046082949		181	16	272	0	0.00			
ANKRD30BP2	0	broad.mit.edu	37	21	14415122	14415122	+	RNA	SNP	C	C	T	rs373171837	bycluster	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GGGAGGCTTGTGC		24	5	0.21	24	0	0				0	0				
KRTAP10-10	353333	mdanderson.org	37	21	46058034	46058034	+	Missense_Mutation	SNP	G	G	A	rs1785472	by2hit2allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_181688	exon1	c.G700A	p.V234M	CGCCCCGTGTGCT		51	4	0.08	56	0	0				0	0				
DGCR2	9993	mdanderson.org	37	22	19052402	19052402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_005137	exon4	c.G507T	p.W169C	CTGGTCCCATTCC		46	3	0.07	45	0	0				65	0	0.00			
CLDN5	7122	mdanderson.org	37	22	19511708	19511708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001130861	exon1	c.C326A	p.A109E	CCGCACGCCAGGA		26	2	0.08	23	0	0				18	0	0.00			
TMPRSS6	164656	mdanderson.org	37	22	37480838	37480838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_153609	exon9	c.C1042A	p.Q348K	CGCCCTGGGAGTC		25	2	0.08	40	1	0.025				1	0	0.00			
SH3BP1	23616	mdanderson.org	37	22	38044407	38044407	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_018957	exon14	c.G1281T	p.L427L	AGTCCTGGGACCC		33	3	0.09	49	0	0				282	0	0.00			
SI	6476	bcgsc.ca	37	3	164709207	164709207	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	SI	NM_001041	exon44	c.T5042A	p.I1681K	AGGTTTATTGTGT		147	0	0.00	135	0	0		500		0	0				
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	55593603	55593603	+	Missense_Mutation	SNP	T	T	G	rs121913235	bycluster	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KIT,NS,germ_cell_tumour,0,64	KIT	NM_000222	exon11	c.T1669G	p.W557G	GTACAGTGGAAGG		115	11	0.10	123	0	0		0	64	174	52	0.30			
DSPP	1834	broad.mit.edu	37	4	88536079	88536079	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	DSPP	NM_014208	exon5	c.T2265C	p.S755S	TGACAGTAGCGAT		92	10	0.11	78	1	0.0128205128		174		0	0				
DCHS2	54798	mdanderson.org	37	4	155411422	155411422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001142552	exon1	c.C1086A	p.S362R	CACGCCGCTCAGC		36	3	0.08	62	0	0				0	0				
.	10934	bcgsc.ca	37	4	174537281	174537281	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GTGGCACTCCATA		208	0	0.00	210	0	0				0	0				
PLEKHG4B	153478	mdanderson.org	37	5	144949	144949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_052909	exon4	c.G751T	p.V251F	AAAGAGGTCCGGG		51	4	0.08	51	0	0				29	0	0.00			
MBOAT1	154141	mdanderson.org	37	6	20151480	20151480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001080480	exon3	c.C259A	p.L87I	CAAAAAGATGCAC		43	3	0.07	34	0	0				15	0	0.00			
COL11A2	1302	mdanderson.org	37	6	33133977	33133977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_080680	exon61	c.G4399A	p.A1467T	GGCCAGCAGGTCC		29	3	0.10	29	0	0				1	0	0.00			
BAK1	578	mdanderson.org	37	6	33543581	33543581	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001188	exon3	c.G195A	p.L65L	AGGTTGCAGAGGT		39	3	0.08	53	0	0				55	0	0.00			
KLC4	89953	broad.mit.edu	37	6	43039101	43039101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	KLC4	NM_201523	exon9	c.G1298T	p.G433V	AGTTTGGGTCTGT		155	4	0.03	154	0	0		89		22	0	0.00			
C6orf70	55780	hgsc.bcm.edu;mdanderson.org	37	6	170175417	170175417	+	Nonsense_Mutation	SNP	G	G	T	rs376417698	alternate_allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	C6orf70,NS,carcinoma,0,1	C6orf70	NM_018341	exon14	c.G1369T	p.E457X	TTCCCCGAAGAAC		52	3	0.06	58	0	0		0	1	106	0	0.00			
NT5C3A	51251	bcgsc.ca	37	7	33102326	33102326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001002010	exon1	c.G7C	p.A3P	ACGGGGCCCTCAT		126	1	0.01	107	0	0				7	0	0.00			
CAMK2B	816	broad.mit.edu	37	7	44268438	44268439	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	CAMK2B	NM_001220	exon19	c.1425_1426insC	p.P475fs	GCAGGGCGGGGGC		51	8	0.16	53	0	0		56		0	0				
GTF2IRD2P1	0	broad.mit.edu	37	7	72685060	72685061	+	RNA	INS	-	-	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	AGACTCCTCTCAG		7	3	0.43	3	0	0				1	0	0.00			
PHTF2	57157	broad.mit.edu	37	7	77531162	77531162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	PHTF2	NM_001127359	exon5	c.T268C	p.F90L	TTCCCCTTTTTCT		308	5	0.02	336	0	0		104		199	0	0.00			
MUC17	140453	hgsc.bcm.edu	37	7	100678918	100678918	+	Silent	SNP	G	G	A	rs200627718	byfrequency	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	MUC17,colon,carcinoma,+1,1	MUC17	NM_001040105	exon3	c.G4221A	p.P1407P	CACGCCGGTAGTC		86	5	0.06	85	1	0.0117647059	0.002	1	1	0	0				
LAMB1	3912	mdanderson.org	37	7	107570055	107570055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_002291	exon30	c.C4547A	p.A1516D	AAATCAGCACTAT		89	4	0.04	89	0	0				65	0	0.00			
SSPO	23145	mdanderson.org	37	7	149474940	149474940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_198455	exon5	c.C739T	p.R247W	TGTCAGCGGGTGA		20	2	0.10	30	0	0				0	0				
KCNH2	3757	hgsc.bcm.edu	37	7	150671831	150671831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_000238	exon2	c.G275A	p.R92H	ACTTTGCGCTCCT		121	5	0.04	123	0	0				17	0	0.00			
ASIC3	9311	broad.mit.edu	37	7	150746098	150746098	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_020322	exon1	c.G126T	p.R42R	GCGCCGGGGGATG		68	3	0.04	98	0	0				41	0	0.00			
ERICH1	157697	bcgsc.ca	37	8	623373	623373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	ERICH1,NS,carcinoma,+1,1	ERICH1	NM_207332	exon4	c.G979A	p.E327K	CTTCCTCGCTGGC		115	0	0.00	134	0	0		50	1	64	0	0.00			
CHRNA2	1135	mdanderson.org	37	8	27327404	27327404	+	Silent	SNP	G	G	T	rs200729883	by1000genomes;alternate_allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_000742	exon3	c.C168A	p.T56T	AGTCTCGGTATGC		73	5	0.07	70	0	0				0	0				
PURG	29942	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	30889696	30889696	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	PURG_ENST00000475541,colon,carcinoma,-2,2	PURG_ENST00000475541	NM_013357	exon1	c.C603A	p.T201T	CATCATGGTTTGT		114	8	0.07	117	0	0		-2	2	0	0				
GDAP1	54332	bcgsc.ca	37	8	75262792	75262792	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	GDAP1	NM_018972	exon1	c.G96T	p.T32T	TTGGACGCATTCG		41	0	0.00	60	0	0		36		8	0	0.00			
tRNA-Glu	0	hgsc.bcm.edu	37	MT	14698	14698	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	AACCACGACCAAT		65	6	0.09	186	0	0				0	0				
ZFX	7543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	24228773	24228773	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_003410	exon10	c.C1698T	p.H566H	AAAGCACATGAGA		151	20	0.13	166	0	0				25	6	0.24			
DDX3X	1654	hgsc.bcm.edu;broad.mit.edu	37	X	41204800	41204801	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	DDX3X	NM_001356	exon12	c.1314_1315insG	p.T438fs	TGCAACAGGTAAC		214	30	0.14	226	0	0		138		196	0	0.00			
TEX13A	56157	mdanderson.org	37	X	104464815	104464815	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_031274	exon2	c.G267A	p.R89R	CCGCACCCTGTGC		39	3	0.08	37	0	0				0	0				
HCFC1	3054	mdanderson.org	37	X	153223524	153223524	+	Silent	SNP	G	G	T	rs370251100	alternate_allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_005334	exon11	c.C1980A	p.T660T	GGTGATGGTCTTG		53	3	0.06	57	1	0.0175438596				64	0	0.00			
DNM1	1759	mdanderson.org	37	9	130996383	130996383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	TAAGGAGCAGGTG		48	3	0.06	48	0	0				24	0	0.00			
