Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
AGRN	375790	hgsc.bcm.edu	37	1	977425	977425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	AGRN,NS,carcinoma,0,1	AGRN	NM_198576	exon7	c.G1267A	p.G423R	TGTGACGGGGCCT		37	2	0.05	23	0	0		0	1	20	0	0.00			
PRAMEF4	400735	ucsc.edu	37	1	12939904	12939904	+	Missense_Mutation	SNP	A	A	C	rs77146569	byfrequency	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	PRAMEF4	NM_001009611	exon4	c.T898G	p.F300V	TGAGGAACTTTAA		50	13	0.26	19	5	0.2631578947		62		0	0				
.	0	broad.mit.edu	37	1	16959834	16959834	+	RNA	SNP	G	G	T	rs201123694	bycluster;byfrequency	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	Q6ZWC0_HUMAN,NS,carcinoma,0,1	.	.	.	.	.	GCTGCAGCGGGTC		57	5	0.09	41	1	0.0243902439			1	29	10	0.34			
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	35836147	35836147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_005095	exon7	c.C1100T	p.T367I	GCTCCACACTGTG		85	6	0.07	97	0	0				57	7	0.12			
LOC729930	0	bcgsc.ca	37	1	89755966	89755966	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GGACTTCTTTGAT		29	0	0.00	33	0	0				0	0				
DPYD-AS1	100873932	hgsc.bcm.edu	37	1	97700346	97700346	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GTCACATAACTTA		66	13	0.20	91	0	0				0	0				
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	rs11554290	bycluster;byfrequency;byhapmap	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	NRAS,NS,haematopoietic_neoplasm,-1,2068	NRAS	NM_002524	exon3	c.A182G	p.Q61R	TCTTCTTGTCCAG		183	14	0.08	103	0	0		-1	2068	82	26	0.32			
SEC22B	9554	broad.mit.edu	37	1	145112049	145112050	+	RNA	INS	-	-	GTG	rs147351886	bycluster	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	CTAAAGTGTGGTG		8	4	0.50	6	0	0				2	0	0.00			
ARMC3	219681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	23290962	23290962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_173081	exon12	c.G1540A	p.A514T	CTGACGGCCAATG		117	14	0.12	113	0	0				1	0	0.00			
LGI1	9211	mdanderson.org	37	10	95549857	95549857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_005097	exon5	c.A433G	p.S145G	TCCAGGAGCCTTG		37	10	0.27	39	5	0.1282051282				0	0				
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	112361739	112361739	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_005445	exon25	c.G2908C	p.E970Q	AAACTTGAGCAGT		170	13	0.08	140	0	0				579	158	0.27			
NLRP6	171389	mdanderson.org	37	11	281471	281471	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_138329	exon4	c.G1737A	p.V579V	GTGGGTGCAGGGA		52	3	0.06	51	0	0				5	0	0.00			
MUC2	4583	mdanderson.org	37	11	1093295	1093296	+	Missense_Mutation	DNP	CT	CT	TC	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	MUC2_ENST00000441003,rectum,carcinoma,+1,2	MUC2_ENST00000441003	NM_002457	exon30	c.T5115C	p.T1705I	CCACCACTACGGT		40	8	0.20	29	4	0.1379310345		1	2	0	0				
FOLH1	2346	bcgsc.ca	37	11	49204790	49204790	+	Silent	SNP	A	A	G	rs76509850	bycluster;byfrequency	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		173	12	0.07	182	2	0.010989011		141		4	0	0.00			
OR8U1	219417	broad.mit.edu	37	11	56143593	56143593	+	Missense_Mutation	SNP	G	G	T	rs201539171	bycluster;by1000genomes	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	OR8U1,colon,carcinoma,+1,1	OR8U1	NM_001005204	exon1	c.G494T	p.R165L	CCTTCCGCCTCTC		142	4	0.03	144	0	0		59	1	0	0				
MMP8	4317	broad.mit.edu	37	11	102589148	102589148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	MMP8	NM_002424	exon5	c.T781C	p.Y261H	TACCATAGATGGC		121	3	0.02	116	0	0		68		0	0				
NCAM1	4684	bcgsc.ca	37	11	113076296	113076296	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	NCAM1	NM_001242608	exon5	c.A398G	p.E133G	AGGGGGAAGATGC		117	0	0.00	137	0	0		372		5	0	0.00			
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	459828	459828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KDM5A_ENST00000399788,NS,carcinoma,+1,4	KDM5A_ENST00000399788	NM_001042603	exon10	c.C1267T	p.P423S	TCACCGGAAATCC		246	14	0.06	183	0	0		1	4	88	14	0.16			
DENND5B	160518	broad.mit.edu;mdanderson.org	37	12	31632777	31632777	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	DENND5B	NM_144973	exon3	c.C650G	p.S217X	TGCTGTGAGGTAA		97	5	0.05	69	0	0		114		52	0	0.00			
LLPH	84298	broad.mit.edu	37	12	66517700	66517700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	LLPH,NS,carcinoma,0,1	LLPH	NM_032338	exon3	c.A310G	p.R104G	TCAGCCTTTTTCT		166	3	0.02	153	0	0		25	1	128	0	0.00			
PTPRB	0	broad.mit.edu;mdanderson.org	37	12	70970172	70970172	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	PTPRB	NM_001109754	exon11	c.A2832T	p.Q944H	CCGCTCTTGGCTG		113	7	0.06	108	0	0		676		5	0	0.00			
HCAR3	8843	broad.mit.edu	37	12	123201030	123201030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	HCAR3	NM_006018	exon1	c.C255A	p.D85E	ATAGTAGTCCATC		93	4	0.04	79	0	0		49		20	0	0.00			
CCDC169	54937	broad.mit.edu	37	13	36822786	36822786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	CCDC169	NM_001144981	exon7	c.C502A	p.Q168K	CCACCTGTTGCCT		74	3	0.04	92	0	0		20		0	0				
.	0	broad.mit.edu	37	14	19857036	19857036	+	RNA	SNP	A	A	G	rs374719458		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	ATAATAAAGTTCA		34	5	0.15	48	1	0.0208333333				1	0	0.00			
KIAA0391	9692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	35593060	35593060	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_014672	exon2	c.C609G	p.A203A	GAAAGCCAGATAT		138	12	0.09	114	0	0				54	13	0.24			
EPB42	2038	hgsc.bcm.edu	37	15	43500484	43500484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_000119	exon8	c.C1109A	p.P370H	CCCTGGGGCAAGG		88	4	0.05	96	0	0				0	0				
CYP19A1	0	broad.mit.edu;mdanderson.org	37	15	51504564	51504564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	CYP19A1	NM_031226	exon10	c.T1216C	p.F406L	GGAAAAACTCGAG		169	17	0.10	138	1	0.0072463768		75		1	0	0.00			
CGNL1	84952	broad.mit.edu	37	15	57731196	57731196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	CGNL1	NM_001252335	exon3	c.G999T	p.R333S	CAGAAGGTATATT		155	4	0.03	121	0	0		125		9	0	0.00			
CYP1A1	1543	hgsc.bcm.edu	37	15	75012969	75012969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_000499	exon7	c.T1400C	p.V467A	AGAAAGACCTCCC		91	4	0.04	60	0	0				0	0				
MEX3B	84206	mdanderson.org	37	15	82336271	82336271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_032246	exon2	c.C940A	p.R314S	CCAGGCGCTGGGT		15	2	0.13	16	0	0				48	0	0.00			
IGFALS	3483	mdanderson.org	37	16	1842006	1842006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001146006	exon2	c.C527A	p.A176E	CCGAGTGCCAGGC		31	3	0.10	20	0	0				1	0	0.00			
ABCC6P1	0	broad.mit.edu	37	16	18597595	18597596	+	RNA	INS	-	-	A	rs199955375		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	CCGTATCAAAAAA		9	3	0.33	7	1	0.1428571429				0	0				
XPO6	23214	hgsc.bcm.edu	37	16	28167671	28167671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	XPO6,NS,carcinoma,-1,1	XPO6	NM_015171	exon7	c.T821C	p.I274T	TGGAAGATGGTGG		94	4	0.04	106	0	0		-1	1	202	0	0.00			
MAP2K3	5606	bcgsc.ca	37	17	21188136	21188136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	MAP2K3	.	.	.	.	CCTGGCCTGGGCC		32	0	0.00	77	0	0		135		35	0	0.00			
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	29162012	29162012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	ATAD5,NS,carcinoma,-2,1	ATAD5	NM_024857	exon2	c.A913G	p.I305V	GGTTATATAAGTG		252	11	0.04	226	0	0		-2	1	11	3	0.27			
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274343	39274343	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KRTAP4-11,NS,malignant_melanoma,0,2	KRTAP4-11	NM_033059	exon1	c.T225C	p.C75C	GGGGCGACAGCAG		47	2	0.04	41	2	0.0487804878		0	2	0	0				
FAM104A	84923	broad.mit.edu;mdanderson.org	37	17	71228444	71228444	+	Translation_Start_Site	SNP	A	A	C	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	FAM104A,NS,carcinoma,+1,1	FAM104A	NM_032837	exon1	c.T2G	p.M1R	CCCCCCATGTCGC		41	5	0.12	34	0	0		15	1	16	4	0.25			
.	0	bcgsc.ca	37	18	58330687	58330687	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	CTCAACCATCTGC		22	0	0.00	35	0	0				0	0				
PDE4A	5141	mdanderson.org	37	19	10572668	10572668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	PDE4A,NS,carcinoma,+1,1	PDE4A	NM_001111307	exon13	c.G1736A	p.R579H	CCGACCGCATCCA		41	4	0.10	41	0	0		1	1	59	0	0.00			
RAD23A	5886	mdanderson.org	37	19	13058704	13058704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001270363	exon2	c.G115T	p.D39Y	GGTCGTGATGCCT		49	3	0.06	46	0	0				460	0	0.00			
ELL	8178	broad.mit.edu	37	19	18572422	18572422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	ELL	NM_006532	exon5	c.C710A	p.A237E	TTGTCCGCCTGCG		56	3	0.05	35	0	0		52		108	0	0.00			
LOC100996307	0	broad.mit.edu	37	19	43057701	43057701	+	RNA	DEL	A	A	-	rs35431333	bycluster	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	TCCTGCAAAAAAA		7	2	0.29	5	0	0				0	0				
TPRX1	284355	broad.mit.edu	37	19	48305622	48305622	+	Missense_Mutation	SNP	A	A	G	rs201007421		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	TPRX1,caecum,carcinoma,0,2	TPRX1	NM_198479	exon2	c.T646C	p.S216P	GGCCTGAGATTGG		51	5	0.10	49	2	0.0408163265		46	2	0	0				
UBE2M	9040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	59067702	59067702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_003969	exon5	c.G392A	p.G131D	TGCAGGCCATAAA		118	11	0.09	115	0	0				349	45	0.13			
ANKRD36BP2	0	broad.mit.edu	37	2	89082294	89082295	+	RNA	INS	-	-	TT	rs368332037	bycluster	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	AGTCTCATATGTT		13	6	0.46	9	0	0				0	0				
ANKRD36BP2	0	broad.mit.edu	37	2	89082296	89082297	+	RNA	INS	-	-	TC	rs370959214		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	TCTCATATGTTGA		13	5	0.38	9	0	0				0	0				
ANKRD36B	57730	broad.mit.edu	37	2	98192550	98192550	+	RNA	DEL	T	T	-	rs370632971		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	TGACTATTAAAAA		6	3	0.50	6	0	0				0	0				
WASH2P	0	broad.mit.edu	37	2	114355774	114355784	+	RNA	DEL	GAGGTGGCTGG	GAGGTGGCTGG	-	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	GAGGTGGCTGG	GAGGTGGCTGG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GTCCCCGAGGTGG		10	3	0.30	4	0	0				4	0	0.00			
MYO18B	84700	mdanderson.org	37	22	26165374	26165374	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_032608	exon4	c.C1491T	p.G497G	AGGAGGCCAGAGC		71	4	0.06	52	0	0				5	0	0.00			
LMF2	91289	mdanderson.org	37	22	50944863	50944863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_033200	exon4	c.G446A	p.R149H	TCCTTGCGGTGGG		19	3	0.16	18	0	0				158	0	0.00			
NPHP3	27031	broad.mit.edu	37	3	132426958	132426958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	NPHP3	NM_153240	exon7	c.C1262A	p.T421N	TTGCTGGTCTTGT		92	3	0.03	121	0	0		110		20	0	0.00			
SI	6476	broad.mit.edu;mdanderson.org	37	3	164709207	164709207	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	SI	NM_001041	exon44	c.T5042A	p.I1681K	AGGTTTATTGTGT		125	6	0.05	135	0	0		500		0	0				
KIT	3815	bcgsc.ca	37	4	55593603	55593603	+	Missense_Mutation	SNP	T	T	G	rs121913235	bycluster	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KIT,NS,germ_cell_tumour,0,64	KIT	NM_000222	exon11	c.T1669G	p.W557G	GTACAGTGGAAGG		143	1	0.01	123	0	0		7396	64	212	1	0.00			
.	0	broad.mit.edu	37	4	68311853	68311855	+	RNA	DEL	GAG	GAG	-	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	GAG	GAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	TATGGCGAGGAGG		6	1	0.17	8	0	0				11	0	0.00			
LINC00575	0	broad.mit.edu	37	4	83542135	83542137	+	RNA	DEL	CAC	CAC	-	rs56218113	bycluster;alternate_allele	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	CAC	CAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	TGGAATCACCACC		8	4	0.50	4	0	0				0	0				
SEC24A	10802	mdanderson.org	37	5	134007576	134007576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_021982	exon4	c.G817T	p.A273S	TTATTGGGTGAGA		58	3	0.05	52	1	0.0192307692				31	0	0.00			
GLYATL3	389396	broad.mit.edu;mdanderson.org	37	6	49494536	49494536	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	GLYATL3	NM_001010904	exon6	c.T776G	p.L259R	TAAGCCTCCTGAA		83	8	0.10	72	0	0		19		0	0				
NT5C3A	0	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	33102326	33102326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001002010	exon1	c.G7C	p.A3P	ACGGGGCCCTCAT		108	7	0.06	107	0	0				19	1	0.05			
.	0	broad.mit.edu	37	7	65996561	65996561	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GCTCCCTTTTGGG		6	2	0.33	5	0	0				17	0	0.00			
.	0	broad.mit.edu	37	7	75729556	75729557	+	RNA	INS	-	-	A	rs61650407	bycluster;by1000genomes	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	TATAATTAAAAAA		7	6	0.86	4	0	0				0	0				
AZGP1P1	0	broad.mit.edu	37	7	99578706	99578706	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GTTTACAGTGAAA		7	3	0.43	6	0	0				0	0				
VGF	7425	mdanderson.org	37	7	100806424	100806424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_003378	exon2	c.C1701A	p.H567Q	GGCGTGGTGGTAG		19	2	0.11	41	0	0				1	0	0.00			
BRAF	673	broad.mit.edu	37	7	140477807	140477807	+	Missense_Mutation	SNP	C	C	T	rs180177038		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	BRAF	NM_004333	exon12	c.G1501A	p.E501K	CTACTTCATTTTT		134	5	0.04	146	0	0		36346		36	2	0.06	rescued with RNA-seq		
ERICH1	157697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	623373	623373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	ERICH1,NS,carcinoma,+1,1	ERICH1	NM_207332	exon4	c.G979A	p.E327K	CTTCCTCGCTGGC		170	25	0.15	134	0	0		1	1	75	11	0.15			
PURG	29942	bcgsc.ca	37	8	30889696	30889696	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	PURG_ENST00000475541,colon,carcinoma,-2,2	PURG	NM_013357	exon1	c.C603A	p.T201T	CATCATGGTTTGT		156	1	0.01	117	0	0		79	2	1	0	0.00			
MTFR1	9650	mdanderson.org	37	8	66620263	66620263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001145839	exon7	c.G950T	p.R317I	TGCCCAGATTTCT		39	3	0.08	31	0	0				2	0	0.00			
KHDRBS3	10656	broad.mit.edu	37	8	136659295	136659295	+	Missense_Mutation	SNP	G	G	T	rs138429826	bycluster;alternate_allele	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	KHDRBS3	NM_006558	exon9	c.G1009T	p.V337F	AAGGGCGTCTACA		163	5	0.03	108	1	0.0092592593		53		210	0	0.00			
ZNF696	79943	mdanderson.org	37	8	144378441	144378441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_030895	exon3	c.A596G	p.H199R	TCCGGCACCAGCG		12	3	0.25	11	0	0				24	1	0.04			
ZC3H3	23144	mdanderson.org	37	8	144590009	144590009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_015117	exon4	c.G1622A	p.R541H	ACAATGCGGTAGC		40	3	0.08	29	0	0				98	0	0.00			
.	441442	bcgsc.ca	37	9	68358239	68358239	+	RNA	SNP	G	G	T	rs112095944	bycluster	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GTGGAGGTCATCA		34	2	0.06	35	3	0.0857142857				1	0	0.00			
APBA1	320	mdanderson.org	37	9	72131575	72131575	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001163	exon2	c.C552A	p.S184S	GGGCTCGGAGTAG		46	3	0.07	47	0	0				4	0	0.00			
STS	412	broad.mit.edu	37	X	7177555	7177555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	STS	NM_000351	exon5	c.T563C	p.L188P	TCTTCCTCCCCCT		134	3	0.02	110	2	0.0181818182		64		15	0	0.00			
ZFX	7543	bcgsc.ca	37	X	24228773	24228773	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	ZFX	NM_003410	exon10	c.C1698T	p.H566H	AAAGCACATGAGA		235	0	0.00	166	0	0		61		45	0	0.00			
DDX3X	1654	bcgsc.ca	37	X	41204800	41204801	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	DDX3X	NM_001356	exon12	c.1314_1315insG	p.T438fs	TGCAACAGGTAAC		259	0	0.00	226	0	0		138		375	0	0.00			
KDM5C	8242	broad.mit.edu	37	X	53231044	53231044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	KDM5C	NM_004187	exon13	c.G1858A	p.A620T	AGTCAGCAGTGCA		150	5	0.03	125	0	0		385		240	0	0.00			
HCFC1	3054	mdanderson.org	37	X	153222908	153222908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_005334	exon13	c.C2210A	p.T737N	GTGGTAGTGATGA		44	3	0.07	44	0	0				118	0	0.00			
