Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
TIE1	7075	broad.mit.edu	37	1	43779569	43779569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	TIE1	NM_005424	exon14	c.T2339C	p.L780P	CTGCCCTTTTAAC		117	3	0.03	66	0	0		132		67	0	0.00			
ZYG11A	440590	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	53343407	53343409	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	CTT	CTT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	ZYG11A	NM_001004339	exon9	c.1595_1597del	p.532_533del	TGTCACCTTCTTG		154	41	0.27	93	0	0		46		4	0	0.00			
LRRC8B	23507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	90058405	90058405	+	Missense_Mutation	SNP	A	A	T	rs201504233		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_015350	exon6	c.A2215T	p.N739Y	TTGATGAATTTGT		138	32	0.23	70	0	0	0.001			26	8	0.31			
FLAD1	80308	broad.mit.edu	37	1	154962054	154962054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	FLAD1,right_upper_lobe,carcinoma,0,1	FLAD1	NM_025207	exon3	c.A1136G	p.K379R	GGAAAAAGGTGGC		119	4	0.03	40	0	0		52	1	138	0	0.00			
ETV3	2117	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	157094985	157094985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001145312	exon5	c.C1187T	p.S396L	CGTGCCGACTGCC		92	5	0.05	55	0	0				45	0	0.00			
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	176853487	176853487	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_004319	exon19	c.A3214T	p.K1072X	CCACTTTGGAGTG		167	42	0.25	84	0	0				28	0	0.00			
PRG4	23572	bcgsc.ca	37	1	186276165	186276166	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	CA	CA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	PRG4	NM_005807	exon7	c.A1315G	p.T439A	ACCCACCACCCCC		76	8	0.11	51	0	0		259		6	0	0.00			
SOX13	9580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204092277	204092277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_005686	exon11	c.G1172T	p.R391L	AGGAGCGGCTGGA		137	82	0.60	98	0	0				112	58	0.52			
ZNF503	84858	mdanderson.org	37	10	77159542	77159542	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_032772	exon2	c.G906A	p.P302P	GCCTCCCGGGCCC		18	2	0.11	25	0	0				150	0	0.00			
PIPSL	0	broad.mit.edu	37	10	95718362	95718365	+	RNA	DEL	TTTC	TTTC	-	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	TTTC	TTTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	.	.	.	.	TTTTCTTTTCTTT		20	9	0.45	8	0	0				1	0	0.00			
CRTAC1	55118	mdanderson.org	37	10	99655016	99655016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001206528	exon11	c.C1472A	p.A491E	AAGTGTGCCACGG		31	3	0.10	23	0	0				14	0	0.00			
MMP21	118856	mdanderson.org	37	10	127461212	127461212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_147191	exon3	c.C805A	p.P269T	TGGTGGGAGGTGT		110	5	0.05	87	0	0				0	0				
RRP8	23378	mdanderson.org	37	11	6622574	6622574	+	Missense_Mutation	SNP	C	C	T	rs142606127		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	RRP8,NS,carcinoma,0,1	RRP8	NM_015324	exon3	c.G722A	p.R241H	GCCATGCGGGCTC		47	3	0.06	36	0	0	0	0	1	89	0	0.00			
MYRF	745	mdanderson.org	37	11	61545883	61545883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001127392	exon14	c.G1935T	p.L645F	GATCTTGCCTGAG		49	4	0.08	28	0	0				62	0	0.00			
ATG2A	23130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64662855	64662855	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_015104	exon40	c.G5487T	p.L1829L	ATCCTGCAGGGAG		62	27	0.44	55	0	0				85	38	0.45			
CLPB	81570	mdanderson.org	37	11	72145171	72145171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001258394	exon1	c.C106T	p.R36C	CAGGGCGCACATG		21	2	0.10	29	0	0				28	0	0.00			
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99715691	99715691	+	Missense_Mutation	SNP	C	C	T	rs201512506		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001243270	exon4	c.C385T	p.P129S	GGCAATCCAGTTC		126	27	0.21	94	0	0				0	0				
PGR	5241	mdanderson.org	37	11	100999245	100999245	+	Missense_Mutation	SNP	G	G	T	rs11571145	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	PGR,NS,carcinoma,0,1	PGR	NM_000926	exon1	c.C557A	p.P186H	CCCCGGGGCAGCA		22	2	0.09	16	0	0		0	1	0	0				
SCNN1A	0	broad.mit.edu	37	12	6457129	6457129	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	SCNN1A	NM_001159576	exon12	c.T2097C	p.P699P	AGGGGGAGGGGCT		247	10	0.04	75	2	0.0266666667		54		121	0	0.00			
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52758951	52758951	+	Missense_Mutation	SNP	G	G	A	rs148274330		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_002283	exon2	c.C424T	p.R142C	GGAAGCGCACCTG		92	17	0.18	65	0	0				0	0				
C12orf52	84934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113629502	113629502	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_032848	exon4	c.G690A	p.T230T	TTCCACGTCAGGG		111	30	0.27	68	0	0				104	43	0.41			
GLT1D1	144423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	129467613	129467613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_144669	exon8	c.T779C	p.L260P	GGAAGCTGGAAGG		62	20	0.32	49	0	0				19	1	0.05			
ULK1	8408	mdanderson.org	37	12	132401102	132401102	+	Missense_Mutation	SNP	C	C	T	rs147399196	bycluster;byfrequency;by1000genomes	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_003565	exon20	c.C2038T	p.R680W	GGCCTGCGGCCAG		48	3	0.06	28	0	0	0.001			146	0	0.00			
AKAP11	11215	hgsc.bcm.edu	37	13	42876257	42876257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_016248	exon8	c.G3375T	p.K1125N	GCTCAAGGGAGAA		91	4	0.04	136	0	0				5	0	0.00			
MYCBP2	23077	mdanderson.org	37	13	77672103	77672103	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	MYCBP2_ENST00000407578,NS,NS,-1,15	MYCBP2_ENST00000407578	NM_015057	exon56	c.C9186A	p.S3062S	TTCTTTGGAAAGT		40	4	0.10	55	0	0		-1	15	10	0	0.00			
FOS	2353	mdanderson.org	37	14	75748069	75748069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_005252	exon4	c.G1085T	p.S362I	AGGGCAGCAGCAG		32	3	0.09	30	0	0				209	0	0.00			
PLA2G4D	283748	mdanderson.org	37	15	42362251	42362251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_178034	exon19	c.C2086T	p.P696S	GGAAGGGCAGCCC		25	3	0.12	30	0	0				1	0	0.00			
PKD1	5310	mdanderson.org	37	16	2153892	2153892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001009944	exon23	c.C8166A	p.D2722E	GATGAGGTCTCCT		15	2	0.13	15	0	0				45	0	0.00			
ATP6V0D1	9114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67473035	67473035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_004691	exon6	c.C655T	p.R219C	AGGCGCGGCGGTC		47	21	0.45	40	0	0				384	172	0.45			
PAFAH1B1	5048	bcgsc.ca	37	17	2585079	2585080	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	GT	GT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	PAFAH1B1	NM_000430	exon11	c.1216_1217del	p.406_406del	GTAAAAGTGTGGG		141	47	0.33	85	0	0		26		224	0	0.00			
USP6	9098	broad.mit.edu	37	17	5050419	5050419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	USP6	NM_004505	exon21	c.C2361A	p.S787R	AGTGAGCGGATTT		229	5	0.02	156	0	0		213		0	0				
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274343	39274343	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	KRTAP4-11,NS,malignant_melanoma,0,2	KRTAP4-11	NM_033059	exon1	c.T225C	p.C75C	GGGGCGACAGCAG		52	3	0.06	48	0	0		0	2	0	0				
.	0	broad.mit.edu	37	17	41382161	41382162	+	RNA	INS	-	-	G	rs11428305	bycluster	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	.	.	.	.	GAGTACCGGGGGC		6	4	0.67	3	0	0				11	0	0.00			
MAP3K3	4215	hgsc.bcm.edu;mdanderson.org	37	17	61767648	61767648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	MAP3K3,NS,carcinoma,0,2	MAP3K3	NM_203351	exon13	c.G1181T	p.R394L	ACTGGCGCCGGGG		48	3	0.06	44	0	0		0	2	54	0	0.00			
LRRC45	201255	mdanderson.org	37	17	79988001	79988001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_144999	exon15	c.G1555T	p.A519S	GACGAGGCGCAGG		25	3	0.12	22	0	0				115	0	0.00			
RAB12	201475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	8609900	8609900	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001025300	exon1	c.A175T	p.M59L	AGCCTGATGGAGC		101	48	0.48	120	0	0				40	16	0.40			
OSBPL1A	114876	mdanderson.org	37	18	21914216	21914216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_080597	exon6	c.C473A	p.T158K	AGAGCTGTGAGTT		42	3	0.07	65	0	0				6	0	0.00			
SAFB	6294	broad.mit.edu	37	19	5667167	5667167	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	SAFB	NM_002967	exon18	c.T2445C	p.P815P	GCCTCCTCCCCCC		145	27	0.19	85	12	0.1411764706		74		849	0	0.00			
DNM2	1785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10908073	10908073	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001005361	exon10	c.C1214G	p.P405R	TCACCCCCGACAT		63	17	0.27	36	0	0				80	27	0.34			
ANKLE1	126549	broad.mit.edu	37	19	17397492	17397501	+	Frame_Shift_Del	DEL	TGTGTGTGTT	TGTGTGTGTT	-	rs35771129	alternate_allele	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	TGTGTGTGTT	TGTGTGTGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	ANKLE1	.	.	.	.	TGTGTGTGTGTGT		11	7	0.64	6	0	0		27		5	0	0.00			
TMEM161A	54929	mdanderson.org	37	19	19232599	19232599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_017814	exon7	c.C625T	p.P209S	GAAGTGGCTCTAA		42	3	0.07	42	0	0				117	0	0.00			
ZNF565	147929	broad.mit.edu;bcgsc.ca	37	19	36673726	36673728	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	TGT	TGT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	ZNF565	NM_001042474	exon5	c.1140_1142del	p.380_381del	CTCTGATGTCGTG		69	17	0.25	58	0	0		46		39	0	0.00			
ZNF565	147929	broad.mit.edu;bcgsc.ca	37	19	36673730	36673734	+	Frame_Shift_Del	DEL	GTGTG	GTGTG	-	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	GTGTG	GTGTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	ZNF565	NM_001042474	exon5	c.1134_1138del	p.378_380del	GATGTCGTGTGAG		67	17	0.25	60	0	0		46		32	0	0.00			
PNMAL2	57469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	46997528	46997528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_020709	exon1	c.G1195A	p.A399T	CCACGGCGTCCAC		35	9	0.26	27	0	0				15	3	0.20			
MERTK	10461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	112760766	112760766	+	Splice_Site	SNP	T	T	C	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_006343	exon12	c.1786+2T>C	.	TGAAGGTAAGCAA		160	42	0.26	114	0	0				6	0	0.00			
.	284958	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113480334	113480334	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	.	.	.	.	TGGCTGCTCCCGT		114	39	0.34	77	0	0				0	0				
WASH2P	375260	bcgsc.ca	37	2	114356239	114356239	+	RNA	SNP	T	T	C	rs77485924		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	.	.	.	.	TGCCCGTGTGTCA		41	39	0.95	41	16	0.3902439024				12	9	0.75			
LOC100131320	0	broad.mit.edu	37	2	130726529	130726529	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	.	.	.	.	AAGTGCAAAAAAA		8	3	0.38	6	0	0				0	0				
NFE2L2	4780	bcgsc.ca	37	2	178129282	178129282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	NFE2L2	NM_006164	exon1	c.C23A	p.P8Q	CCCGGCGGCGGCA		65	4	0.06	61	0	0		225		39	0	0.00			
NEU4	129807	mdanderson.org	37	2	242757880	242757880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001167599	exon4	c.G1000A	p.A334T	GAGGCTGCTGTAG		31	3	0.10	33	0	0				1	0	0.00			
LAMA5	3911	broad.mit.edu;mdanderson.org	37	20	60887507	60887507	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	LAMA5	NM_005560	exon68	c.C9309T	p.L3103L	CCGCTTGAGGTCC		8	4	0.50	9	0	0		268		279	131	0.47			
MX2	4600	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	42767524	42767524	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	MX2	NM_002463	exon7	c.C882A	p.T294T	CCTGACCAAACCA		243	9	0.04	193	0	0		84		10	0	0.00			
SCN10A	6336	mdanderson.org	37	3	38805080	38805080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_006514	exon5	c.G607T	p.G203C	CTGTGCCAACATA		22	2	0.09	23	0	0				0	0				
GNL3	26354	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52721395	52721396	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.,1	GNL3	NM_014366	exon3	c.205_206del	p.69_69del	GGAAACAGAGGGT		230	66	0.29	183	0	0		37		291	0	0.00			
.	0	broad.mit.edu	37	3	111197863	111197878	+	RNA	DEL	CACACACACACACACA	CACACACACACACACA	-	rs71945922	alternate_allele	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	CACACACACACACACA	CACACACACACACACA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	.	.	.	.	CAGCCTCACACAC		6	3	0.50	4	0	0				0	0				
SEMA5B	54437	broad.mit.edu;mdanderson.org	37	3	122631795	122631795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	SEMA5B	NM_001256347	exon18	c.C2782T	p.R928C	GGACGCGGAAGCC		104	28	0.27	77	0	0		303		57	17	0.30			
MUC4	4585	mdanderson.org	37	3	195511417	195511417	+	Missense_Mutation	SNP	G	G	A	rs74839766	bycluster;byfrequency	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_018406	exon2	c.C7034T	p.A2345V	GTGGATGCTGAGG		98	6	0.06	82	3	0.0365853659	0.008			0	0				
ABCA11P	79963	hgsc.bcm.edu	37	4	466474	466474	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	.	.	.	.	ACATCCCTGAATG		119	7	0.06	113	0	0				31	1	0.03			
OTUD4	54726	broad.mit.edu	37	4	146059041	146059041	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	OTUD4,bladder,carcinoma,0,2	OTUD4	NM_001102653	exon21	c.T2691C	p.H897H	GGGAGGATGAGCC		84	4	0.05	75	2	0.0266666667		120	2	19	0	0.00			
ANKH	56172	mdanderson.org	37	5	14746005	14746005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_054027	exon7	c.C889A	p.R297S	CAGCACGGATTTC		52	3	0.06	61	0	0				31	0	0.00			
FTMT	94033	mdanderson.org	37	5	121187745	121187745	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_177478	exon1	c.G87T	p.P29P	GCTCCCGCTGCGT		17	3	0.18	15	0	0				0	0				
TCOF1	6949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	149767638	149767638	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001135243	exon18	c.G3033A	p.Q1011Q	TACACAGTGCTTG		156	7	0.04	155	0	0				116	10	0.09			
DSP	1832	bcgsc.ca	37	6	7583862	7583862	+	Missense_Mutation	SNP	C	C	T	rs372242085		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	DSP,colon,carcinoma,0,1	DSP	NM_004415	exon24	c.C6367T	p.R2123C	GGAATGCGCCTGC		47	4	0.09	42	0	0		306	1	98	0	0.00			
CMAHP	0	broad.mit.edu	37	6	25089567	25089568	+	RNA	INS	-	-	A	rs3838674	bycluster;byfrequency;by1000genomes	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	CMAHP	.	.	.	.	AGTCTGCCCCAGC		11	6	0.55	4	0	0		6		0	0				
SPACA1	81833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88757823	88757823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_030960	exon1	c.C200A	p.T67N	CTGAAACCGAGGA		107	31	0.29	96	0	0				0	0				
CHST12	55501	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	2472936	2472936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	CHST12	NM_018641	exon2	c.G662T	p.R221L	TCTGGCGCCGCTA		42	4	0.10	28	0	0		39		62	0	0.00			
GRID2IP	392862	broad.mit.edu	37	7	6547896	6547901	+	In_Frame_Del	DEL	CTGAGC	CTGAGC	-	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	CTGAGC	CTGAGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	GRID2IP	NM_001145118	exon13	c.2259_2264del	p.753_755del	GGGGGGCTGAGCG		44	10	0.23	30	0	0		82		0	0				
FAM126A	84668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23016321	23016321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_032581	exon6	c.C521T	p.A174V	TTCTGTGCTGTCA		113	29	0.26	81	0	0				9	4	0.44			
KPNA7	402569	broad.mit.edu	37	7	98790654	98790654	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	KPNA7	NM_001145715	exon5	c.A624C	p.S208S	GGTGGGTGAAATC		82	14	0.17	60	8	0.1333333333		31		0	0				
MUC17	140453	mdanderson.org	37	7	100679429	100679429	+	Missense_Mutation	SNP	T	T	A	rs140211003	alternate_allele	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001040105	exon3	c.T4732A	p.L1578M	ACAAGTTTGCCTG		119	10	0.08	81	1	0.012345679				0	0				
ZNF425	155054	broad.mit.edu;bcgsc.ca	37	7	148801009	148801009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	ZNF425	NM_001001661	exon4	c.C1954T	p.R652W	TGAGCCGGTACTG		105	5	0.05	81	0	0		99		21	0	0.00			
SSPO	23145	mdanderson.org	37	7	149474749	149474749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_198455	exon5	c.A548G	p.Q183R	TGGGCCAGCTCTG		28	3	0.11	21	0	0				4	0	0.00			
ASIC3	9311	mdanderson.org	37	7	150746458	150746458	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_020322	exon1	c.G486T	p.L162L	GCTGCTGGACTGT		41	3	0.07	33	0	0				20	0	0.00			
FASTK	10922	mdanderson.org	37	7	150774452	150774452	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_006712	exon7	c.G1236T	p.L412L	CCCCAGCAGCTGG		32	3	0.09	32	0	0				543	0	0.00			
MTERFD1	51001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	97263294	97263294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_015942	exon4	c.C517T	p.P173S	CTTCTGGATGTTT		52	14	0.27	38	0	0				132	39	0.30			
CPSF1	29894	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145623257	145623257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	CPSF1	NM_013291	exon20	c.A1985G	p.E662G	TGGCCCTCGGCAC		49	5	0.10	48	0	0		92		201	6	0.03			
ARHGAP39	80728	mdanderson.org	37	8	145830968	145830968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_025251	exon3	c.G32A	p.S11N	TTATGGCTCCTGC		41	3	0.07	40	0	0				17	0	0.00			
KANK1	23189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	745199	745199	+	Silent	SNP	G	G	A	rs148157700		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	KANK1_ENST00000382303,NS,carcinoma,0,2	KANK1_ENST00000382303	NM_001256876	exon16	c.G4023A	p.T1341T	GAAGACGTCTCCT		124	54	0.44	158	0	0	0	0	2	49	24	0.49			
GNAQ	2776	mdanderson.org	37	9	80430537	80430537	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_002072	exon3	c.C471A	p.T157T	CTATTTGGTAGAG		48	3	0.06	62	0	0				17	0	0.00			
C9orf47	286223	mdanderson.org	37	9	91606483	91606483	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001001938	exon2	c.C345T	p.D115D	GAACGACGTCGCG		15	2	0.13	14	0	0				10	0	0.00			
NEK6	10783	broad.mit.edu	37	9	127089658	127089658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	NEK6,NS,carcinoma,0,1	NEK6	NM_001166171	exon8	c.G658T	p.V220L	GGCGTCGTGAAGC		62	3	0.05	64	0	0		47	1	78	0	0.00			
COL5A1	1289	mdanderson.org	37	9	137593103	137593103	+	Missense_Mutation	SNP	G	G	A	rs142933609	bycluster;by1000genomes	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	COL5A1,bladder,carcinoma,+1,3	COL5A1	NM_000093	exon4	c.G578A	p.R193H	TCGACCGCAGCGA		68	4	0.06	77	0	0	0	1	3	203	0	0.00			
CARD9	64170	mdanderson.org	37	9	139262259	139262259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_052813	exon8	c.C1099A	p.L367M	CGTGCAGCTCCTC		24	3	0.13	12	0	0				9	0	0.00			
RBM10	8241	broad.mit.edu	37	X	47030582	47030582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	RBM10	NM_001204468	exon4	c.G552T	p.E184D	GGAGGAGGATGAG		77	4	0.05	46	0	0		117		14	0	0.00			
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA		256	6	0.02	148	2	0.0135135135		28		47	0	0.00			
HMGB3	3149	mdanderson.org	37	X	150156360	150156360	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_005342	exon5	c.G576A	p.E192E	AGAAGAGGAGGAG		16	2	0.13	10	0	0				164	2	0.01			
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153583390	153583390	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001110556	exon31	c.G5020C	p.V1674L	TGTCCACAGTGAT		118	53	0.45	90	0	0				1418	652	0.46			
