Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
C1orf170	84808	bcgsc.ca	37	1	915325	915325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	C1orf170	.	.	.	.	GCAGGTATAGACA		63	8	0.13	82	1	0.012195122		5		0	0				
MST1L	0	broad.mit.edu;bcgsc.ca	37	1	17084730	17084730	+	RNA	DEL	G	G	-	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	ACTGCCGGGCAGT		144	10	0.07	175	0	0				3	0	0.00			
LYPLA2	11313	mdanderson.org	37	1	24120782	24120782	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_007260	exon8	c.C438T	p.S146S	GTTGAGCTGCTGG		30	3	0.10	31	0	0				216	0	0.00			
TACSTD2	4070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	59042191	59042191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_002353	exon1	c.C638T	p.A213V	CCGGCGGCCTTCT		126	32	0.25	78	0	0				10	1	0.10			
LOC645166	645166	ucsc.edu	37	1	148933289	148933289	+	Splice_Site	SNP	A	A	G	rs9729175	bycluster;byfrequency;by2hit2allele	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NR_027355	exon3	c.236-2A>G	.	GCCCGCAGGATAT		52	14	0.27	61	4	0.0655737705				0	0				
CHRNB2	1141	mdanderson.org	37	1	154544408	154544408	+	Missense_Mutation	SNP	G	G	T	rs200483865	alternate_allele	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_000748	exon5	c.G1109T	p.R370L	GTGAGCGCGAGGG		15	3	0.20	16	0	0				0	0				
ATP1A2	477	mdanderson.org	37	1	160109764	160109764	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	ATP1A2,NS,carcinoma,+2,3	ATP1A2	NM_000702	exon22	c.G3024T	p.R1008R	GCGGCGGTATCCT		49	3	0.06	55	2	0.0363636364		2	3	3	0	0.00			
MAEL	84944	mdanderson.org	37	1	166961963	166961963	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_032858	exon4	c.C366T	p.S122S	TTTTAGCCATGGC		42	3	0.07	61	0	0				3	0	0.00			
NPL	80896	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	182798766	182798766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	NPL	NM_001200056	exon13	c.C807A	p.N269K	AAAGAACCAAAGG		376	13	0.03	343	1	0.0029154519		55		16	0	0.00			
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197390687	197390687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001257966	exon6	c.G1729T	p.A577S	GCAGAGGCTGTGA		87	13	0.15	86	0	0				0	0				
NEK7	140609	mdanderson.org	37	1	198288648	198288648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_133494	exon10	c.G905T	p.S302I	CAAGCAGCTAAAC		41	3	0.07	40	0	0				5	0	0.00			
KLHDC8A	55220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205307669	205307669	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_018203	exon5	c.T813G	p.F271L	AGCCACAAAATCT		84	27	0.32	82	0	0				4	0	0.00			
WNT9A	7483	mdanderson.org	37	1	228112986	228112986	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_003395	exon2	c.C330T	p.Y110Y	GGCCCGGTAGCGG		35	3	0.09	37	0	0				9	0	0.00			
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235904732	235904732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_000081	exon31	c.C8348T	p.P2783L	AGGGATGGGCTGA		94	30	0.32	90	0	0				0	0				
.	0	bcgsc.ca	37	10	69510569	69510586	+	RNA	DEL	AAATATAAACCAGTGACT	AAATATAAACCAGTGACT	-	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	AAATATAAACCAGTGACT	AAATATAAACCAGTGACT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	GGACTGAAATATA		97	30	0.31	96	0	0				0	0				
ANKRD2	26287	mdanderson.org	37	10	99337614	99337614	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	ANKRD2,NS,carcinoma,-1,1	ANKRD2	NM_020349	exon2	c.G226T	p.E76X	GAGGATGAGAAGC		34	3	0.09	38	0	0		-1	1	1	0	0.00			
MUC2	4583	mdanderson.org	37	11	1092920	1092920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_002457	exon30	c.C4739A	p.T1580N	CACAGACCCCAAC		23	3	0.13	32	3	0.09375				0	0				
MRVI1	10335	mdanderson.org	37	11	10597927	10597927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_130385	exon21	c.C2691A	p.D897E	CCAGGAGTCCCTC		41	3	0.07	49	0	0				2	0	0.00			
SOX6	55553	mdanderson.org	37	11	16068174	16068174	+	Silent	SNP	C	C	T	rs373068695		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	SOX6_ENST00000527619,NS,lymphoid_neoplasm,-1,2	SOX6_ENST00000527619	NM_001145819	exon12	c.G1548A	p.A516A	CTTCCGCGCCTCC		45	3	0.07	52	0	0		-1	2	0	0				
ZFP91	80829	mdanderson.org	37	11	58377393	58377393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001197051	exon3	c.G461T	p.S154I	GGCGTAGTAGTAG		67	4	0.06	73	0	0				3	0	0.00			
CEP57	9702	mdanderson.org	37	11	95546250	95546250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001243777	exon3	c.G357T	p.K119N	TTCAAAGAATGAG		41	3	0.07	73	0	0				18	0	0.00			
HMBS	3145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118958997	118958997	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	HMBS,NS,carcinoma,+2,1	HMBS	NM_000190	exon2	c.C66T	p.R22R	GATTCGCGTGGGT		63	13	0.21	68	0	0		2	1	41	18	0.44			
USP5	8078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6965261	6965261	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_003481	exon4	c.C385T	p.L129L	GATTACCTGGAGA		263	38	0.14	100	0	0				115	18	0.16			
KRT6A	3853	broad.mit.edu	37	12	52883755	52883755	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	KRT6A	NM_005554	exon6	c.G1175C	p.R392T	TCAGATCTCAGCC		220	7	0.03	145	0	0		89		0	0				
KRT6A	3853	broad.mit.edu	37	12	52886666	52886666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	KRT6A	NM_005554	exon1	c.G307A	p.G103S	CACCACCGAAACC		352	41	0.12	250	0	0		89		0	0				
NCOR2	9612	broad.mit.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	NCOR2_ENST00000405201,NS,carcinoma,0,11	NCOR2	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT		47	3	0.06	41	2	0.0487804878		475	11	8	0	0.00			
NCOR2	9612	mdanderson.org	37	12	124887102	124887102	+	Silent	SNP	C	C	T	rs7488825	bycluster;alternate_allele	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_006312	exon16	c.G1488A	p.Q496Q	TTGTTGCTGCTGC		39	3	0.08	42	0	0				7	0	0.00			
.	0	broad.mit.edu	37	12	127423596	127423597	+	RNA	DEL	TG	TG	-	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	TGTGTTTGTGTGT		7	3	0.43	5	0	0				0	0				
SLITRK1	114798	broad.mit.edu	37	13	84455509	84455509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	SLITRK1	NM_052910	exon1	c.A134G	p.K45R	AAGCCCTTTTTTT		105	4	0.04	95	0	0		196		0	0				
IGBP1P1	0	broad.mit.edu	37	14	35409700	35409701	+	RNA	INS	-	-	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	AAAAAAAATTTTT		7	3	0.43	10	0	0				0	0				
MEGF11	84465	broad.mit.edu	37	15	66262977	66262977	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	MEGF11	NM_032445	exon8	c.C813A	p.C271X	CTGGCTGCAGTTC		115	4	0.03	124	0	0		70		0	0				
CLK3	1198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74914482	74914482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001130028	exon4	c.C835T	p.R279C	AGTAAGCGCAGCA		84	18	0.21	95	0	0				38	6	0.16			
PTX4	390667	mdanderson.org	37	16	1537645	1537645	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001013658	exon2	c.C453A	p.R151R	CTCCAGGCGTGCC		40	3	0.08	41	0	0				0	0				
COQ7	10229	mdanderson.org	37	16	19089428	19089428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_016138	exon6	c.G602A	p.S201N	TGAAGAGCATTAT		43	3	0.07	48	0	0				53	0	0.00			
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20471599	20471599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001010845	exon3	c.G163A	p.A55T	CACTGGGCTGACA		96	28	0.29	132	0	0				0	0				
CLEC18B	497190	broad.mit.edu	37	16	74444923	74444923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	CLEC18B,NS,carcinoma,0,6	CLEC18B	NM_001011880	exon9	c.G994A	p.G332R	GCACCCCGCCTTT		247	4	0.02	301	1	0.0033222591		45	6	3	0	0.00			
CTU2	348180	mdanderson.org	37	16	88780056	88780056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001012759	exon9	c.G875T	p.G292V	CGCAGGGCTTCTC		37	3	0.08	42	0	0				83	0	0.00			
COX10-AS1	100874058	hgsc.bcm.edu;broad.mit.edu	37	17	13972737	13972737	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	AGCCCGCCACACT		18	4	0.22	9	0	0				1	0	0.00			
.	0	broad.mit.edu	37	17	29371977	29371978	+	RNA	INS	-	-	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	GTCTCTGAAAAAA		6	2	0.33	4	0	0				0	0				
TRIM37	4591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57126703	57126703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_015294	exon15	c.C1366G	p.P456A	TATCTGGTGGTGA		116	23	0.20	115	0	0				13	7	0.54			
ABCA7	10347	mdanderson.org	37	19	1047263	1047263	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_019112	exon15	c.C1953A	p.S651S	CTTCTCCCGCGCC		38	3	0.08	41	0	0				3	0	0.00			
C19orf57	79173	mdanderson.org	37	19	13996848	13996848	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_024323	exon7	c.G1689A	p.K563K	GCCCGGCTTGTTC		35	3	0.09	44	1	0.0227272727				3	0	0.00			
ANKLE1	126549	broad.mit.edu	37	19	17397500	17397501	+	Frame_Shift_Del	DEL	TT	TT	-	rs10606406	alternate_allele	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	ANKLE1	.	.	.	.	TGTGTGTTTGTGT		12	10	0.83	10	0	0		27		1	0	0.00			
NDUFA13	51079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19638552	19638552	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_015965	exon4	c.C288A	p.I96I	GGCCATCATCATG		67	23	0.34	53	0	0				1380	532	0.39			
ATP1A3	478	mdanderson.org	37	19	42482471	42482471	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001256214	exon13	c.C1677A	p.C559X	ATAATGGCAGAAA		50	3	0.06	26	0	0				16	0	0.00			
ZNF526	116115	mdanderson.org	37	19	42729994	42729994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_133444	exon3	c.G1439T	p.G480V	GCAAGGGCTTCAA		32	3	0.09	54	0	0				10	0	0.00			
BCL3	602	bcgsc.ca	37	19	45262002	45262002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	BCL3	NM_005178	exon8	c.A1081G	p.K361E	AGGGGGAAGGCCA		26	4	0.15	32	0	0		28		30	0	0.00			
ZC3H4	23211	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	47570041	47570041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	ZC3H4	NM_015168	exon15	c.G3484A	p.E1162K	CCGGCTCTGTGGC		22	4	0.18	26	0	0		96		12	6	0.50			
LHB	3972	mdanderson.org	37	19	49519472	49519472	+	Silent	SNP	C	C	A	rs377599735	alternate_allele	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	LHB,colon,carcinoma,0,2	LHB	NM_000894	exon3	c.G279T	p.P93P	ACCACGCGGGCAG		52	3	0.06	28	0	0		0	2	1	0	0.00			
PPP6R1	22870	mdanderson.org	37	19	55742998	55742998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_014931	exon20	c.C2345A	p.A782D	TCTGTGGCTTCCT		40	3	0.08	39	0	0				136	0	0.00			
U2AF2	11338	mdanderson.org	37	19	56173984	56173984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001012478	exon6	c.G603T	p.E201D	TTTGGAGGTGAGC		51	3	0.06	51	1	0.0196078431				271	0	0.00			
CHMP2A	27243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59063125	59063125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_198426	exon6	c.G560T	p.G187V	AGCGAGCCCCCAG		56	17	0.30	90	0	0				202	97	0.48			
PXDN	7837	hgsc.bcm.edu	37	2	1677521	1677521	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_012293	exon9	c.C912A	p.I304I	GTTCTGGATCATC		98	4	0.04	128	0	0				13	0	0.00			
GGT8P	645367	hgsc.bcm.edu	37	2	91964414	91964414	+	RNA	SNP	C	C	A	rs141248674		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	ATCTATCTATATC		12	4	0.33	19	0	0				0	0				
SH3RF3	344558	mdanderson.org	37	2	109746264	109746264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001099289	exon1	c.C268T	p.H90Y	TCGCGCCACGAGC		16	2	0.13	23	0	0				1	0	0.00			
TTN	7273	mdanderson.org	37	2	179442124	179442124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001267550	exon324	c.A68938G	p.S22980G	ACCAACTTGATTT		39	3	0.08	42	1	0.0238095238				10	0	0.00			
CLK1	1195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201721420	201721420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001162407	exon9	c.C1168T	p.P390S	CTTCAGGTGCTCT		254	72	0.28	283	0	0				70	15	0.21			
NDUFS1	4719	broad.mit.edu	37	2	207009656	207009656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	NDUFS1	NM_001199984	exon9	c.C874T	p.H292Y	CCTCATGCATACG		166	5	0.03	170	0	0		82		55	0	0.00			
SNED1	25992	broad.mit.edu	37	2	241979571	241979571	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	SNED1,NS,carcinoma,0,1	SNED1	NM_001080437	exon7	c.C1125T	p.C375C	TGTGTGCCAGGCC		57	5	0.09	39	2	0.0512820513		76	1	1	0	0.00			
XRN2	22803	mdanderson.org	37	20	21319686	21319686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_012255	exon14	c.G1238T	p.S413I	AGGACAGTTTTAG		50	4	0.08	50	0	0				99	0	0.00			
FRG1B	284802	hgsc.bcm.edu	37	20	29628458	29628458	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	GTGGTGTTTCAAA		69	5	0.07	73	0	0				0	0				
FRG1B	284802	hgsc.bcm.edu	37	20	29628464	29628464	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	TTTCAAATAGACT		67	4	0.06	70	0	0				0	0				
SOGA1	140710	mdanderson.org	37	20	35422006	35422006	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_080627	exon14	c.C4479A	p.S1493S	GAGGCTGGAGAGT		46	3	0.07	30	0	0				3	0	0.00			
GATA5	140628	mdanderson.org	37	20	61050111	61050111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_080473	exon2	c.C467A	p.A156D	GGCCCGGCAGTCC		14	3	0.21	15	0	0				3	0	0.00			
.	7179	broad.mit.edu	37	21	11014937	11014937	+	Splice_Site	SNP	C	C	T	rs76467559	bycluster;byfrequency	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	ACAATACCTATCA		120	7	0.06	95	1	0.0105263158				0	0				
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17072477	17072477	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_014406	exon1	c.G964C	p.E322Q	TGATCTCCATCCA		130	31	0.24	117	0	0				0	0				
TRIM71	131405	mdanderson.org	37	3	32915369	32915369	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001039111	exon2	c.C912T	p.G304G	AATGGGCCGGCAT		46	3	0.07	57	0	0				14	0	0.00			
DZIP3	9666	mdanderson.org	37	3	108373068	108373068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	DZIP3,colon,carcinoma,0,1	DZIP3	NM_014648	exon19	c.G2110T	p.D704Y	ATAAAAGATGATG		47	3	0.06	53	0	0		0	1	13	0	0.00			
MUC4	4585	bcgsc.ca	37	3	195505870	195505870	+	Missense_Mutation	SNP	G	G	A	rs201928034		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	MUC4	NM_018406	exon2	c.C12581T	p.P4194L	GTGACAGGAAGAG		83	7	0.08	77	2	0.025974026		1505		24	2	0.08			
FAM157A	728262	hgsc.bcm.edu	37	3	197880167	197880167	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001145248	exon2	c.G246A	p.Q82Q	GCAGCAGCAGCAA		326	17	0.05	405	0	0				0	0				
HSD17B4	3295	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	118788317	118788317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_000414	exon1	c.G47T	p.G16V	TCACCGGCGCGGG		80	5	0.06	68	0	0				40	0	0.00			
PCDHB18	54660	hgsc.bcm.edu;ucsc.edu	37	5	140615614	140615614	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	PCDHB18,NS,carcinoma,0,2	PCDHB18	.	.	.	.	GGACCCGCACCTG		49	6	0.12	37	1	0.027027027		0	2	0	0				
CDKAL1	54901	mdanderson.org	37	6	20739812	20739812	+	Missense_Mutation	SNP	G	G	T	rs149431105	bycluster	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	CDKAL1,colon,carcinoma,0,1	CDKAL1	NM_017774	exon6	c.G434T	p.R145L	AGCCTCGCCAGGA		48	3	0.06	44	0	0	0	0	1	15	0	0.00			
RING1	6015	broad.mit.edu;mdanderson.org	37	6	33179304	33179304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	RING1	NM_002931	exon5	c.G825T	p.K275N	GGAGAAGGGAGAA		39	4	0.10	34	0	0		40		69	0	0.00			
LRRC1	55227	mdanderson.org	37	6	53660065	53660065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_018214	exon1	c.G11T	p.C4F	TCCACTGCATCCC		26	3	0.12	21	0	0				3	0	0.00			
KHDC3L	154288	mdanderson.org	37	6	74073486	74073486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	C6orf221,NS,carcinoma,0,1	C6orf221	NM_001017361	exon3	c.C557T	p.A186V	AGGCTGCCAACAA		31	3	0.10	33	0	0		0	1	605	0	0.00			
ARID1B	57492	broad.mit.edu;mdanderson.org	37	6	157100005	157100005	+	Silent	SNP	C	C	A	rs184815562	bycluster;by1000genomes	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	ARID1B	NM_017519	exon1	c.C942A	p.G314G	CGGCGGCGGAGGA		32	4	0.13	26	0	0		320		0	0				
RAC1	5879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6426908	6426908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_006908	exon2	c.C101G	p.P34R	ATATCCCTACTGT		108	17	0.16	105	0	0				63	28	0.44			
DYNC1I1	1780	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	95439756	95439756	+	Missense_Mutation	SNP	G	G	A	rs377495263		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	DYNC1I1	NM_004411	exon3	c.G161A	p.R54H	TGGATCGCAAACG		94	5	0.05	85	0	0		111		0	0				
POTEA	340441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	43152474	43152474	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001005365	exon3	c.C460G	p.H154D	CTACAACATGGCA		176	40	0.23	165	0	0				0	0				
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	104831755	104831755	+	Missense_Mutation	SNP	G	G	A	rs377178152		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	RIMS2_ENST00000507740,NS,carcinoma,0,2	RIMS2_ENST00000507740	NM_014677	exon1	c.G20A	p.R7H	CATTGCGCCAGGT		84	7	0.08	57	0	0		0	2	0	0				
NOV	4856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120435213	120435213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_002514	exon5	c.T915G	p.N305K	CCACAATACCAAA		215	34	0.16	132	0	0				2	0	0.00			
AKNA	80709	mdanderson.org	37	9	117124782	117124782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_030767	exon8	c.C1820A	p.A607D	TCTAGGGCCGCGT		38	3	0.08	42	0	0				12	0	0.00			
RNR1	6052	hgsc.bcm.edu	37	MT	988	988	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	ACCTGAGTTGTAA		36	32	0.89	43	0	0				0	0				
MAGEB1	4112	broad.mit.edu	37	X	30269096	30269096	+	Silent	SNP	C	C	T	rs200431416	by1000genomes;alternate_allele	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	MAGEB1	NM_177415	exon3	c.C486T	p.G162G	CTTTGGCCTTGAT		193	5	0.03	121	0	0		76		4	0	0.00			
TEX13A	56157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104463847	104463847	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_031274	exon5	c.G1029A	p.L343L	AGACCACAGGCTA		116	35	0.30	87	0	0				0	0				
AMMECR1	9949	broad.mit.edu;mdanderson.org	37	X	109561071	109561071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	AMMECR1	NM_015365	exon1	c.G229T	p.G77C	CGCCGCCGCAGCC		62	3	0.05	34	0	0		16		3	0	0.00			
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117043475	117043475	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001168299	exon6	c.C1164T	p.A388A	AATGACGGCGATG		153	60	0.39	108	0	0				0	0				
